Query 028211
Match_columns 212
No_of_seqs 157 out of 479
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 100.0 2.7E-36 9.2E-41 234.0 9.6 97 73-211 2-102 (102)
2 3mce_A Nascent polypeptide-ass 99.9 7.7E-23 2.6E-27 145.6 4.4 57 72-128 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 99.9 4.2E-22 1.4E-26 138.7 5.6 54 74-127 1-54 (54)
4 3mcb_B Transcription factor BT 99.3 8.5E-12 2.9E-16 87.8 7.1 48 81-128 2-49 (58)
5 3lkx_A Transcription factor BT 99.2 1.7E-11 5.7E-16 88.4 7.3 49 80-128 1-49 (66)
6 1wj7_A Hypothetical protein (R 98.5 4.8E-08 1.6E-12 75.9 3.6 37 175-211 40-76 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 98.2 1.4E-06 4.9E-11 62.2 4.6 40 172-211 7-46 (64)
8 1z96_A DNA-damage, UBA-domain 97.1 0.00051 1.7E-08 43.0 3.7 34 176-210 6-39 (40)
9 2g3q_A Protein YBL047C; endocy 95.2 0.01 3.4E-07 38.0 2.2 33 176-209 6-38 (43)
10 1wji_A Tudor domain containing 94.8 0.029 9.9E-07 39.3 3.9 36 173-209 8-43 (63)
11 2dak_A Ubiquitin carboxyl-term 94.2 0.041 1.4E-06 38.1 3.5 35 173-208 8-42 (63)
12 1wiv_A UBP14, ubiquitin-specif 93.8 0.06 2E-06 38.6 3.9 37 172-209 27-63 (73)
13 1veg_A NEDD8 ultimate buster-1 93.8 0.056 1.9E-06 40.1 3.8 34 173-207 28-61 (83)
14 1wgn_A UBAP1, ubiquitin associ 93.6 0.041 1.4E-06 39.1 2.7 31 176-207 21-51 (63)
15 1whc_A RSGI RUH-027, UBA/UBX 3 93.5 0.094 3.2E-06 36.6 4.4 35 172-207 7-42 (64)
16 1vg5_A RSGI RUH-014, rhomboid 93.4 0.071 2.4E-06 38.5 3.8 36 174-210 29-64 (73)
17 2cpw_A CBL-interacting protein 93.4 0.099 3.4E-06 36.5 4.4 34 173-207 18-52 (64)
18 2dai_A Ubadc1, ubiquitin assoc 92.9 0.11 3.6E-06 38.3 4.1 35 172-207 27-61 (83)
19 2jy5_A Ubiquilin-1; UBA, alter 92.6 0.12 4.1E-06 34.6 3.8 34 176-210 14-48 (52)
20 1ify_A HHR23A, UV excision rep 92.6 0.083 2.8E-06 34.9 2.9 33 176-209 10-42 (49)
21 2knz_A Ubiquilin-4; cytoplasm, 92.5 0.12 4.2E-06 34.6 3.6 33 177-210 14-47 (53)
22 2ekk_A UBA domain from E3 ubiq 92.5 0.11 3.8E-06 33.7 3.4 34 172-207 7-40 (47)
23 2crn_A Ubash3A protein; compac 91.9 0.24 8.4E-06 34.5 4.8 35 172-207 7-42 (64)
24 2bwb_A Ubiquitin-like protein 91.9 0.17 5.9E-06 33.1 3.8 33 177-210 10-43 (46)
25 2dag_A Ubiquitin carboxyl-term 91.7 0.16 5.3E-06 36.5 3.7 34 173-207 8-42 (74)
26 2dah_A Ubiquilin-3; UBA domain 91.3 0.15 5E-06 34.6 2.9 33 177-210 12-45 (54)
27 2ooa_A E3 ubiquitin-protein li 90.9 0.19 6.5E-06 34.4 3.2 30 176-206 13-42 (52)
28 1wr1_B Ubiquitin-like protein 90.5 0.27 9.1E-06 33.9 3.7 33 177-210 20-53 (58)
29 1v92_A NSFL1 cofactor P47; 3-h 89.8 0.34 1.2E-05 30.8 3.6 33 177-209 8-40 (46)
30 2d9s_A CBL E3 ubiquitin protei 89.3 0.3 1E-05 33.5 3.2 29 177-206 12-40 (53)
31 2lbc_A Ubiquitin carboxyl-term 89.2 0.34 1.1E-05 37.3 3.8 37 173-210 77-113 (126)
32 2dkl_A Trinucleotide repeat co 88.7 0.47 1.6E-05 34.9 4.2 33 175-208 22-54 (85)
33 1vej_A Riken cDNA 4931431F19; 87.2 0.63 2.1E-05 33.6 3.9 34 176-210 31-65 (74)
34 1vek_A UBP14, ubiquitin-specif 86.8 0.68 2.3E-05 33.9 4.0 35 172-207 27-62 (84)
35 2dal_A Protein KIAA0794; FAS a 86.4 0.86 2.9E-05 31.3 4.1 33 177-209 18-50 (62)
36 2dna_A Unnamed protein product 85.1 0.68 2.3E-05 33.0 3.1 33 177-210 22-55 (67)
37 4ae4_A Ubiquitin-associated pr 84.4 0.73 2.5E-05 35.7 3.3 24 185-208 86-109 (118)
38 1otr_A Protein CUE2; protein-p 84.0 0.83 2.8E-05 30.6 3.0 35 176-210 6-41 (49)
39 2dzl_A Protein FAM100B; UBA-li 83.6 1.4 4.6E-05 30.9 4.1 33 177-209 20-52 (66)
40 2oo9_A E3 ubiquitin-protein li 83.4 1.3 4.5E-05 29.5 3.7 29 177-206 7-35 (46)
41 2cp8_A NEXT to BRCA1 gene 1 pr 83.1 0.81 2.8E-05 31.4 2.7 26 185-210 19-45 (54)
42 2cwb_A Chimera of immunoglobul 80.5 1.5 5E-05 33.8 3.6 29 182-210 73-102 (108)
43 1dv0_A DNA repair protein HHR2 78.7 1.5 5.3E-05 28.6 2.8 29 178-207 8-36 (47)
44 2dam_A ETEA protein; KIAA0887, 75.1 3.5 0.00012 28.8 4.0 33 177-209 21-54 (67)
45 1wgl_A TOLL-interacting protei 73.5 3 0.0001 28.6 3.3 38 173-210 8-46 (59)
46 2juj_A E3 ubiquitin-protein li 72.9 2.2 7.6E-05 29.5 2.5 30 176-206 9-38 (56)
47 3e21_A HFAF1, FAS-associated f 72.5 3.9 0.00013 26.8 3.5 33 177-209 8-41 (45)
48 1nri_A Hypothetical protein HI 72.4 1 3.4E-05 39.1 0.8 35 176-210 246-280 (306)
49 3k9o_A Ubiquitin-conjugating e 69.9 4 0.00014 33.6 3.9 33 177-210 166-198 (201)
50 4dbg_B Ring finger protein 31; 64.4 3.7 0.00013 33.8 2.6 36 176-211 104-139 (162)
51 4dbg_B Ring finger protein 31; 62.0 6.3 0.00022 32.5 3.5 24 186-209 74-97 (162)
52 1eej_A Thiol:disulfide interch 60.1 17 0.0006 29.1 5.9 43 68-121 2-51 (216)
53 2cos_A Serine/threonine protei 59.9 4.5 0.00015 27.8 1.9 23 184-206 18-40 (54)
54 4ae4_A Ubiquitin-associated pr 58.9 6.9 0.00024 30.1 3.1 26 183-209 16-41 (118)
55 3k6g_A Telomeric repeat-bindin 56.6 15 0.00051 28.4 4.5 36 175-210 14-49 (111)
56 1vdl_A Ubiquitin carboxyl-term 51.6 7.3 0.00025 28.6 2.0 26 186-211 36-62 (80)
57 3ihp_A Ubiquitin carboxyl-term 51.4 10 0.00035 37.7 3.7 36 172-208 718-753 (854)
58 2dhy_A CUE domain-containing p 46.5 17 0.0006 25.4 3.3 25 186-210 31-55 (67)
59 1oai_A Nuclear RNA export fact 45.3 31 0.001 23.4 4.3 33 178-210 11-43 (59)
60 3e46_A Ubiquitin-conjugating e 39.8 26 0.00089 30.1 4.0 27 184-210 224-250 (253)
61 1oqy_A HHR23A, UV excision rep 37.6 16 0.00054 33.2 2.4 33 177-210 171-203 (368)
62 1nri_A Hypothetical protein HI 37.2 7.1 0.00024 33.7 0.0 30 178-207 275-304 (306)
63 2lva_A Ubiquitin carboxyl-term 38.6 9.5 0.00032 30.3 0.0 19 193-211 38-56 (129)
64 3bny_A Aristolochene synthase; 32.1 24 0.00083 29.7 2.6 24 176-199 243-266 (320)
65 2xvc_A ESCRT-III, SSO0910; cel 31.9 38 0.0013 23.5 3.0 22 177-198 27-48 (59)
66 2jp7_A MRNA export factor MEX6 30.7 52 0.0018 22.2 3.5 33 178-210 10-42 (57)
67 1di1_A Aristolochene synthase; 28.8 30 0.001 28.7 2.6 24 176-199 229-252 (300)
68 4ham_A LMO2241 protein; struct 28.6 35 0.0012 25.5 2.7 20 179-198 42-61 (134)
69 3tqn_A Transcriptional regulat 26.5 49 0.0017 24.1 3.1 22 177-198 35-56 (113)
70 1ps1_A Pentalenene synthase; a 25.5 45 0.0015 28.3 3.1 24 175-198 234-257 (337)
71 2k9i_A Plasmid PRN1, complete 25.5 62 0.0021 20.1 3.1 22 176-197 22-44 (55)
72 1wj7_A Hypothetical protein (R 24.9 55 0.0019 24.9 3.1 34 169-202 48-81 (104)
73 2fpn_A YWMB; structural genomo 24.1 38 0.0013 28.6 2.3 54 68-121 144-210 (216)
74 2cpg_A REPA protein, transcrip 23.8 73 0.0025 19.1 3.1 21 177-197 16-37 (45)
75 2qsf_X RAD23, UV excision repa 23.6 83 0.0028 25.7 4.2 30 177-207 133-162 (171)
76 3neu_A LIN1836 protein; struct 23.0 61 0.0021 24.0 3.1 22 177-198 39-60 (125)
77 2b0l_A GTP-sensing transcripti 22.2 67 0.0023 23.3 3.1 22 177-198 45-66 (102)
78 2ek5_A Predicted transcription 20.2 72 0.0025 24.0 3.0 22 177-198 30-51 (129)
79 2k9l_A RNA polymerase sigma fa 20.0 1.1E+02 0.0039 21.0 3.8 31 167-197 40-70 (76)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=100.00 E-value=2.7e-36 Score=233.95 Aligned_cols=97 Identities=37% Similarity=0.558 Sum_probs=81.5
Q ss_pred HHHHHcCC--eecCCceEEEEEecCceEEEecCCeEEe--eCCCceEEEeccceecchhhHHHHHHHHhhcCCCCCCCCC
Q 028211 73 KAMLKLGM--KPVTGVSRVTIKRTKNILFFISKPDVFK--SPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMA 148 (212)
Q Consensus 73 K~mkKLGl--k~I~gV~rVtIrk~d~~~fvI~~P~V~k--s~gs~TYvVfGeak~edls~q~q~~aa~~~~~~~~~~~~~ 148 (212)
|||+|||| ++|+||+||+||+.+ .+|||++|+||+ ++|++||+|||+++.+++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence 68999999 799999999999998 899999999996 8999999999999987641
Q ss_pred CCCcchhhccCCCccchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211 149 KPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 211 (212)
Q Consensus 149 ~~~~~~~a~~~~~~e~eeevd~~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt 211 (212)
+ ++||+++||+|||+||||||++|++||++||||||+|||.||
T Consensus 60 -----------------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 -----------------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp -----------------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred -----------------c---cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 0 158999999999999999999999999999999999999996
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.86 E-value=7.7e-23 Score=145.62 Aligned_cols=57 Identities=65% Similarity=1.073 Sum_probs=51.1
Q ss_pred HHHHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211 72 RKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 128 (212)
Q Consensus 72 rK~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~ 128 (212)
|++|+||||++|+||+||+|||++|++|+|++|+||++++++||+|||+++.+|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence 568999999999999999999999999999999999999999999999999999863
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.85 E-value=4.2e-22 Score=138.71 Aligned_cols=54 Identities=72% Similarity=1.169 Sum_probs=51.9
Q ss_pred HHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchh
Q 028211 74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS 127 (212)
Q Consensus 74 ~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls 127 (212)
+|+||||++|+||+||+|||++|.+|+|++|+||++++++||+|||+++.+|++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence 489999999999999999999999999999999999999999999999999874
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.27 E-value=8.5e-12 Score=87.84 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=45.5
Q ss_pred eecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211 81 KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 128 (212)
Q Consensus 81 k~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~ 128 (212)
..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.+++++++.
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence 578999999999999999999999999999999999999999998864
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=88.38 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=45.0
Q ss_pred CeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211 80 MKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 128 (212)
Q Consensus 80 lk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~ 128 (212)
+..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.+++++++.
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence 3578999999999999999999999999999999999999999998864
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.52 E-value=4.8e-08 Score=75.87 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=34.9
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211 175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 211 (212)
Q Consensus 175 eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt 211 (212)
+++|++||++||||+++|++||.++||||..||+.|-
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4699999999999999999999999999999999883
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=98.19 E-value=1.4e-06 Score=62.19 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=37.8
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 211 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt 211 (212)
.|+.++|+.+.++||++...+++||.++||||..||.-|.
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5888999999999999999999999999999999998873
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.07 E-value=0.00051 Score=43.02 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.0
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
+.|..+|+. |.||+.|++||+.++||+-.|+--|
T Consensus 6 ~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 468888887 9999999999999999998887654
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.16 E-value=0.01 Score=38.00 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.1
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
+.|..+|+ .|.+|+.|++||+.++||+=.|+=-
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~ 38 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNF 38 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHH
Confidence 45777766 7999999999999999999776533
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.78 E-value=0.029 Score=39.26 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
++++.|+.+|+ .|.+|..|++||+.++||+=.|+--
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~ 43 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNV 43 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 55677877775 7999999999999999998766543
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.041 Score=38.06 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.5
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 208 (212)
Q Consensus 173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM 208 (212)
++++-|..+|+ .|.+|+.|++||+.++|++=.|+-
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 42 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 42 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 45667777776 799999999999999999755553
No 12
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.82 E-value=0.06 Score=38.61 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
.++++.|..+| ..|.+|..|++||+.++|++=.|+=-
T Consensus 27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave~ 63 (73)
T 1wiv_A 27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATDW 63 (73)
T ss_dssp SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 46677787777 47999999999999999999777643
No 13
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.78 E-value=0.056 Score=40.06 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
++++-|..+|+ .|.+|..|++||+.++||+=.|+
T Consensus 28 ~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~ 61 (83)
T 1veg_A 28 PSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAA 61 (83)
T ss_dssp CCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 45678888875 69999999999999999986665
No 14
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.64 E-value=0.041 Score=39.07 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.6
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
+.|+.|+ -.|.|+..|++|||.++|+|-.|.
T Consensus 21 e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 21 QCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 4677777 468999999999999999997764
No 15
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.52 E-value=0.094 Score=36.56 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=29.1
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhc-CCcHHHHH
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTH-NGDIVSAI 207 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~-nGDIV~AI 207 (212)
.++++-|..+|+ .|.+|..|++||+.+ ||++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 42 (64)
T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM 42 (64)
T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence 466778887776 899999999999999 79986664
No 16
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.43 E-value=0.071 Score=38.51 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.7
Q ss_pred CccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 174 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 174 ~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
.++.|..+|+ .|.+|+.|++||+.++||+=.|+=-|
T Consensus 29 ~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~L 64 (73)
T 1vg5_A 29 SEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEIL 64 (73)
T ss_dssp CHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3567888876 79999999999999999997776443
No 17
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.42 E-value=0.099 Score=36.49 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=27.9
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 207 (212)
Q Consensus 173 i~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI 207 (212)
+++..|..+|+ .|.+|+.|++||+.++| ++=.|+
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 52 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC 52 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence 44566877776 89999999999999998 886664
No 18
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.89 E-value=0.11 Score=38.28 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
.++++-|..+|+ .|.+|..|++||+.++|++=.|+
T Consensus 27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ 61 (83)
T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM 61 (83)
T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 466778887776 89999999999999999986664
No 19
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.65 E-value=0.12 Score=34.57 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=28.1
Q ss_pred cchHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211 176 RDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 176 eDIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L 210 (212)
..|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 45666664 689 99999999999999998887655
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.62 E-value=0.083 Score=34.93 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=25.9
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
+.|..+| ..|.+|..|++||+.++||+=.|+=-
T Consensus 10 ~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e~ 42 (49)
T 1ify_A 10 TMLTEIM-SMGYERERVVAALRASYNNPHRAVEY 42 (49)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 3455554 46999999999999999998777643
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.50 E-value=0.12 Score=34.64 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=26.8
Q ss_pred chHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L 210 (212)
.|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus 14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 14 QLEQLNS-MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4665554 688 99999999999999998887554
No 22
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.49 E-value=0.11 Score=33.71 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=27.6
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
.++++.|..+|+ .|.+|+.|++||+.++ ++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~ 40 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGFTREHAMEALLNTS-TMEQAT 40 (47)
T ss_dssp SSCHHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHH
Confidence 466778888876 8999999999999994 765554
No 23
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.95 E-value=0.24 Score=34.55 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 207 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI 207 (212)
..+++.|.-+++ .|.+|+.|++||+.++| ++=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~ 42 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL 42 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356678887777 89999999999999987 775554
No 24
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.93 E-value=0.17 Score=33.12 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.5
Q ss_pred chHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~QagvS-RekAikALke~nGDIV~AIM~L 210 (212)
-|.-++ ..|.+ |..+++||+.++||+=.||--|
T Consensus 10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 344444 46875 7788999999999999888665
No 25
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.71 E-value=0.16 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=27.3
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 207 (212)
Q Consensus 173 i~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI 207 (212)
++++-|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus 8 ~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ 42 (74)
T 2dag_A 8 LDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM 42 (74)
T ss_dssp SCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 55566777776 89999999999999997 775554
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.27 E-value=0.15 Score=34.63 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=25.3
Q ss_pred chHHHHhhhCCCHHH-HHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGVSRSK-AVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~QagvSRek-AikALke~nGDIV~AIM~L 210 (212)
-|..++ ..|.++.. +++||+.++|||=.||-.|
T Consensus 12 ~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 12 QLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 455444 56997765 5999999999998887655
No 27
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=90.85 E-value=0.19 Score=34.42 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.1
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSA 206 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~A 206 (212)
+-|+-.|+ .|.||+.|++||+-++|||--|
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 46777776 4999999999999999998443
No 28
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=90.48 E-value=0.27 Score=33.90 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.9
Q ss_pred chHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~QagvS-RekAikALke~nGDIV~AIM~L 210 (212)
-|..++ ..|.+ |..+++||+.++|||=.||--|
T Consensus 20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 455554 46875 8888999999999998888655
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=89.83 E-value=0.34 Score=30.79 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
-|.-.++=|||++..|+..|..+++|+-.||-.
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ 40 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALAS 40 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 467778889999999999999999999988743
No 30
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.32 E-value=0.3 Score=33.55 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=24.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA 206 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~A 206 (212)
-|+..|+ .|.||+.|++||.-++|||--|
T Consensus 12 ~I~~L~~-lGF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 12 EIERLMS-QGYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCHHHH
Confidence 3888886 4999999999999999999544
No 31
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=89.22 E-value=0.34 Score=37.34 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
+++.-|.-+|+ .|++|..|++||+.++||+-.|+=-|
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L 113 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI 113 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45666777776 89999999999999999997776444
No 32
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.71 E-value=0.47 Score=34.94 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=27.1
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211 175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 208 (212)
Q Consensus 175 eeDIeLVm~QagvSRekAikALke~nGDIV~AIM 208 (212)
++-|..+++ .|.+|..|++||+.++|++=.|+=
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~e 54 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMS 54 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 455666665 799999999999999999977763
No 33
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.16 E-value=0.63 Score=33.62 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=26.8
Q ss_pred cchHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211 176 RDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 176 eDIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L 210 (212)
+-|..++ ..|. .|..+++||+.++|||=.||--|
T Consensus 31 ~qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 31 QELEELK-ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566655 4688 58999999999999998887555
No 34
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=86.76 E-value=0.68 Score=33.89 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=28.5
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcC-CcHHHHH
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHN-GDIVSAI 207 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~n-GDIV~AI 207 (212)
.++++-|..+|+ .|.+|..|++||+.++ |++=.|+
T Consensus 27 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ 62 (84)
T 1vek_A 27 VANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM 62 (84)
T ss_dssp CCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence 456778888776 8999999999999995 6886664
No 35
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.44 E-value=0.86 Score=31.34 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=29.9
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
-|.-.|.=|||++..|+..|..+++||-.||-.
T Consensus 18 ~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 18 LIQQFTTITGASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 578888999999999999999999999998854
No 36
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.09 E-value=0.68 Score=32.96 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=23.8
Q ss_pred chHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L 210 (212)
-|..++ ..|. .|...++||+.++|||-.||=-|
T Consensus 22 ql~qL~-~MGF~d~~an~~AL~at~Gnve~Ave~L 55 (67)
T 2dna_A 22 EMECLQ-AMGFVNYNANLQALIATDGDTNAAIYKL 55 (67)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444 3575 45566999999999998887655
No 37
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.38 E-value=0.73 Score=35.75 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.8
Q ss_pred hCCCHHHHHHHHHhcCCcHHHHHh
Q 028211 185 AGVSRSKAVKALKTHNGDIVSAIM 208 (212)
Q Consensus 185 agvSRekAikALke~nGDIV~AIM 208 (212)
.|.++..|++||+.||||+=.|+=
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAle 109 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALE 109 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 599999999999999999988863
No 38
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=84.02 E-value=0.83 Score=30.56 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.1
Q ss_pred cchHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 176 RDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 176 eDIeLVm~Qa-gvSRekAikALke~nGDIV~AIM~L 210 (212)
+++.+.++=. +|++..++.+|+.+|||+=.||-.|
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5788888875 9999999999999999998887554
No 39
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.56 E-value=1.4 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.6
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
-|.--|.-|||++..|+..|..+++|+-.||-.
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 477888999999999999999999999988754
No 40
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=83.38 E-value=1.3 Score=29.50 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=24.5
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA 206 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~A 206 (212)
-|...|++ |.||+.|++||--+++||-.|
T Consensus 7 ~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A 35 (46)
T 2oo9_A 7 EIENLMSQ-GYSYQDIQKALVIAQNNIEMA 35 (46)
T ss_dssp HHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence 46666664 999999999999999999665
No 41
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.07 E-value=0.81 Score=31.37 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.4
Q ss_pred hCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211 185 AGV-SRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 185 agv-SRekAikALke~nGDIV~AIM~L 210 (212)
.|. .+..-++||+.+||+|=.||..|
T Consensus 19 MGF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 19 MGFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp HTCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 355 99999999999999999999887
No 42
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=80.47 E-value=1.5 Score=33.83 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=23.6
Q ss_pred HhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211 182 MTQAGV-SRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 182 m~Qagv-SRekAikALke~nGDIV~AIM~L 210 (212)
+.+.|. .|..+++||+.++|||=.||=.|
T Consensus 73 L~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 73 LRDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp HHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 345687 56899999999999998887655
No 43
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=78.69 E-value=1.5 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=23.3
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 178 IeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
|+.++ ..|.+|..|++||..+++|+=.|.
T Consensus 8 I~rL~-~mGF~~~~a~~Al~a~~~n~e~A~ 36 (47)
T 1dv0_A 8 IERLK-ALGFPESLVIQAYFACEKNENLAA 36 (47)
T ss_dssp HTTTT-TTTCCHHHHHHHHTTTTSCHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 44443 459999999999999999986664
No 44
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.14 E-value=3.5 Score=28.78 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.1
Q ss_pred chHHHHhhhC-CCHHHHHHHHHhcCCcHHHHHhh
Q 028211 177 DIDLVMTQAG-VSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 177 DIeLVm~Qag-vSRekAikALke~nGDIV~AIM~ 209 (212)
-|.--|.=|| ++...|+..|..||+||-.||-.
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4777788899 99999999999999999988754
No 45
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=73.48 E-value=3 Score=28.60 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCccchHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 173 VEPRDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 173 i~eeDIeLVm~Qa-gvSRekAikALke~nGDIV~AIM~L 210 (212)
+.+++|....+-. +++++....+|+.++||+=.||=.|
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888777766 9999999999999999997777655
No 46
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=72.93 E-value=2.2 Score=29.48 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=25.0
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSA 206 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~A 206 (212)
+-|...|++ |.||+.|++||.-++|||--|
T Consensus 9 ~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 9 SEIENLMSQ-GYSYQDIQKALVIAQNNIEMA 38 (56)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHTTTCSHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhcccHHHH
Confidence 467777764 999999999999999998544
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=72.50 E-value=3.9 Score=26.76 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.4
Q ss_pred chHHHHhhhCCCH-HHHHHHHHhcCCcHHHHHhh
Q 028211 177 DIDLVMTQAGVSR-SKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 177 DIeLVm~QagvSR-ekAikALke~nGDIV~AIM~ 209 (212)
-|.--.+=||++- ++|+.-|..||.||-.|+-.
T Consensus 8 ~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 8 ILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3445566789995 99999999999999999865
No 48
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=72.38 E-value=1 Score=39.14 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=11.6
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
.=...|+..+|||++.|.++|+.++|.+=-||+-+
T Consensus 246 r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 246 RAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp HHHHHHHHHSCCCC---------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 44778999999999999999999999998887754
No 49
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=69.90 E-value=4 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=26.0
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
-|+..+ ..|.+|.+|+.||..+++|+-.|+=.|
T Consensus 166 kV~~l~-~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 166 KIENLC-AMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344443 349999999999999999998886544
No 50
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=64.36 E-value=3.7 Score=33.81 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=31.0
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 211 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt 211 (212)
.-+..+|+-....|+..++||..|.||+--||..|+
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456778888889999999999999999999998874
No 51
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=61.99 E-value=6.3 Score=32.46 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 186 GVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 186 gvSRekAikALke~nGDIV~AIM~ 209 (212)
++|+++|++||..++||+=.|+-.
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ 97 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEE 97 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHccCChHHHHHH
Confidence 479999999999999999888754
No 52
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=60.07 E-value=17 Score=29.07 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCe-------ecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccc
Q 028211 68 EKKSRKAMLKLGMK-------PVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 121 (212)
Q Consensus 68 eKK~rK~mkKLGlk-------~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGea 121 (212)
+..+++.|.++|++ +++|+.+|++ ..+ -+|.++.+ .|+|+|..
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~--------~~y~~~dg-~~~i~G~l 51 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG--------VLYITDDG-KHIIQGPM 51 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE--------EEEEETTS-CEEEESCE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCe--------EEEEcCCC-CEEEEeee
Confidence 45678889888886 4677777665 222 33455443 47888863
No 53
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.91 E-value=4.5 Score=27.75 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.6
Q ss_pred hhCCCHHHHHHHHHhcCCcHHHH
Q 028211 184 QAGVSRSKAVKALKTHNGDIVSA 206 (212)
Q Consensus 184 QagvSRekAikALke~nGDIV~A 206 (212)
..||+++.|.+||+.+||-=+++
T Consensus 18 eMGFd~erae~Alk~Tg~~Gle~ 40 (54)
T 2cos_A 18 NAGCDQEMAGRALKQTGSRSIEA 40 (54)
T ss_dssp HHHCCHHHHHHHHHHHTSCCHHH
T ss_pred HcCCCHHHHHHHHHHhCcccHHH
Confidence 47999999999999998843333
No 54
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=58.93 E-value=6.9 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.4
Q ss_pred hhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211 183 TQAGVSRSKAVKALKTHNGDIVSAIME 209 (212)
Q Consensus 183 ~QagvSRekAikALke~nGDIV~AIM~ 209 (212)
...|.++..++|||+.+++| ++++|.
T Consensus 16 ~~MGFp~~~~~kAl~~~g~~-~e~ame 41 (118)
T 4ae4_A 16 VNMGYSYECVLRAMKAAGAN-IEQILD 41 (118)
T ss_dssp HHTTCCHHHHHHHHHHHCSC-HHHHHH
T ss_pred HHcCCCHHHHHHHHHHHCcC-HHHHHH
Confidence 34699999999999999986 555543
No 55
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=56.65 E-value=15 Score=28.43 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 175 eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
.+=|.-.|++++..--..-+||-+|+||+-.|-.-|
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 356888999999999999999999999998875443
No 56
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.62 E-value=7.3 Score=28.57 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=19.4
Q ss_pred CCCHHHH-HHHHHhcCCcHHHHHhhhc
Q 028211 186 GVSRSKA-VKALKTHNGDIVSAIMELT 211 (212)
Q Consensus 186 gvSRekA-ikALke~nGDIV~AIM~Lt 211 (212)
|+.-... -.||+.++|||..|+--||
T Consensus 36 GiqD~~~L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 36 GINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhccCCHHHHHHHHh
Confidence 4444333 3599999999999998776
No 57
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=51.40 E-value=10 Score=37.72 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211 172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 208 (212)
Q Consensus 172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM 208 (212)
.++++.|..+.. .|.++..|++||+.++||+-.||=
T Consensus 718 ~~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraid 753 (854)
T 3ihp_A 718 PPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 753 (854)
T ss_dssp -CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHH
Confidence 356777877654 799999999999999999988873
No 58
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.47 E-value=17 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 186 GVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 186 gvSRekAikALke~nGDIV~AIM~L 210 (212)
.++++-...+|+.++|++-.||=.|
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7888888888889999987776554
No 59
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=45.32 E-value=31 Score=23.40 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.2
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 178 IeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
|..++.|||...+=+.+.|..|+-|.=.|+-..
T Consensus 11 v~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 11 LQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 677899999999999999999999998887543
No 60
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=39.76 E-value=26 Score=30.13 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.6
Q ss_pred hhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 184 QAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 184 QagvSRekAikALke~nGDIV~AIM~L 210 (212)
+.|.+|..|+.||..+|+|+-.|+=.|
T Consensus 224 ~mgf~~~~~~~al~~~nWd~~~A~e~L 250 (253)
T 3e46_A 224 AAGFDRNAVIVALSSKSWDVETATELL 250 (253)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 449999999999999999998887554
No 61
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=37.58 E-value=16 Score=33.15 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=26.0
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
-|.-+| ..|.+|+.+++||+.++||+=.|+=-|
T Consensus 171 ~i~~l~-~MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 171 MLTEIM-SMGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp HHHHHH-TTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444 469999999999999999997776544
No 62
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=37.19 E-value=7.1 Score=33.69 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 178 IeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
+-++|-.+|||.++|.+.|..++|-|-.||
T Consensus 275 ~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 304 (306)
T 1nri_A 275 LAIMMILSTLSKSEAKVLLERHQGKLRNAL 304 (306)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHHHh
Confidence 346777889999999999999999988776
No 63
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=38.60 E-value=9.5 Score=30.31 Aligned_cols=19 Identities=53% Similarity=0.637 Sum_probs=16.6
Q ss_pred HHHHHhcCCcHHHHHhhhc
Q 028211 193 VKALKTHNGDIVSAIMELT 211 (212)
Q Consensus 193 ikALke~nGDIV~AIM~Lt 211 (212)
.+|||.+||||..|+--||
T Consensus 38 ~~ALkAsnGdl~qAV~~LT 56 (129)
T 2lva_A 38 HEALKASNGDITQAVSLLT 56 (129)
Confidence 5699999999999987776
No 64
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=32.15 E-value=24 Score=29.71 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.8
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhc
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTH 199 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~ 199 (212)
.=|.++|.|.|||.++|+..+.+-
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~ 266 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVM 266 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHH
Confidence 569999999999999999887653
No 65
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.93 E-value=38 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke 198 (212)
||..+.+.-||||++...+|+.
T Consensus 27 dI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHHHHH
Confidence 8999999999999999999985
No 66
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=30.73 E-value=52 Score=22.23 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=28.8
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211 178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210 (212)
Q Consensus 178 IeLVm~QagvSRekAikALke~nGDIV~AIM~L 210 (212)
|..++.|||...+=+.+.|..|+=|.=.||-..
T Consensus 10 v~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 10 LNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 667889999999999999999999998887543
No 67
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=28.80 E-value=30 Score=28.68 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=20.9
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhc
Q 028211 176 RDIDLVMTQAGVSRSKAVKALKTH 199 (212)
Q Consensus 176 eDIeLVm~QagvSRekAikALke~ 199 (212)
.=|.++|.|.|||.++|+..+.+-
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~ 252 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSM 252 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHH
Confidence 579999999999999999887653
No 68
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=28.56 E-value=35 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHhhhCCCHHHHHHHHHh
Q 028211 179 DLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 179 eLVm~QagvSRekAikALke 198 (212)
.-++++.||||.-.++||+.
T Consensus 42 r~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 42 REFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999875
No 69
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.51 E-value=49 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.4
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke 198 (212)
-+.-++++.||||.-+++||..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999998864
No 70
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=25.54 E-value=45 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.8
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHh
Q 028211 175 PRDIDLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 175 eeDIeLVm~QagvSRekAikALke 198 (212)
..=|..+|.|.|||.++|+..+.+
T Consensus 234 ~n~V~~~m~~~g~s~eeA~~~v~~ 257 (337)
T 1ps1_A 234 NNMVMILRREHGWSKSRSVSHMQN 257 (337)
T ss_dssp CSHHHHHHHHHCCCHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHH
Confidence 457899999999999999987754
No 71
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.45 E-value=62 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.0
Q ss_pred cchHHHHhhhCCCHHHHHH-HHH
Q 028211 176 RDIDLVMTQAGVSRSKAVK-ALK 197 (212)
Q Consensus 176 eDIeLVm~QagvSRekAik-ALk 197 (212)
+-|+..+.+.|+|+++.++ ||.
T Consensus 22 ~~l~~~a~~~g~s~s~~ir~ai~ 44 (55)
T 2k9i_A 22 DRLMEIAKEKNLTLSDVCRLAIK 44 (55)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 3567788888999999887 444
No 72
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.89 E-value=55 Score=24.95 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=30.4
Q ss_pred ccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCc
Q 028211 169 DETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGD 202 (212)
Q Consensus 169 d~~gi~eeDIeLVm~QagvSRekAikALke~nGD 202 (212)
+-+|++++.+......++-.-++|+..|.+..+|
T Consensus 48 EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 48 DITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3469999999999999999999999999987654
No 73
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=24.07 E-value=38 Score=28.56 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCeecCCceEEEEEe-----cC-ceEEEecCC----eE---EeeCCCceEEEeccc
Q 028211 68 EKKSRKAMLKLGMKPVTGVSRVTIKR-----TK-NILFFISKP----DV---FKSPNSETYVIFGEA 121 (212)
Q Consensus 68 eKK~rK~mkKLGlk~I~gV~rVtIrk-----~d-~~~fvI~~P----~V---~ks~gs~TYvVfGea 121 (212)
.++++++|++|+.++|.++...++.. +. +..+.+..- +| |...+..||+.+|.|
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~~i~~~~~k~NlqvAlR~~~~~~kT~I~iGTP 210 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTP 210 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCCEEETTEEECEEEEEEC------CEEEEESS
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhhHhhcCCeEEEEEEEEEecCCCCcEEEEEecc
Confidence 68889999999999887776443321 11 011122221 22 234677899999977
No 74
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=23.84 E-value=73 Score=19.07 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.0
Q ss_pred chHHHHhhhCCCHHHHHH-HHH
Q 028211 177 DIDLVMTQAGVSRSKAVK-ALK 197 (212)
Q Consensus 177 DIeLVm~QagvSRekAik-ALk 197 (212)
-++-.+.+.|+||++.++ ||.
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~ 37 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALE 37 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHH
Confidence 467788899999999988 444
No 75
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=23.61 E-value=83 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=24.4
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 207 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke~nGDIV~AI 207 (212)
-|+-+++ .|.+|..||+||..++++.--|.
T Consensus 133 aI~rL~~-mGF~r~~viqA~~ac~knee~Aa 162 (171)
T 2qsf_X 133 AISRLCE-LGFERDLVIQVYFACDKNEEAAA 162 (171)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 4666654 49999999999999999986554
No 76
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.96 E-value=61 Score=24.02 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=18.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke 198 (212)
-+.-++.+.||||.-+++||..
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999999864
No 77
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=22.22 E-value=67 Score=23.31 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.4
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke 198 (212)
-+.-++++.||||.-+++||+.
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3556899999999999998875
No 78
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.20 E-value=72 Score=23.96 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=18.5
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028211 177 DIDLVMTQAGVSRSKAVKALKT 198 (212)
Q Consensus 177 DIeLVm~QagvSRekAikALke 198 (212)
-+.-++++.||||.-.++||+.
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999998864
No 79
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=20.03 E-value=1.1e+02 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred hhccCCCCccchHHHHhhhCCCHHHHHHHHH
Q 028211 167 EVDETGVEPRDIDLVMTQAGVSRSKAVKALK 197 (212)
Q Consensus 167 evd~~gi~eeDIeLVm~QagvSRekAikALk 197 (212)
..|+.|.=..+++-++...|||.++..++|+
T Consensus 40 ~LD~~GYL~~~l~eia~~l~~~~~eve~vL~ 70 (76)
T 2k9l_A 40 YLNEKGFLSKSVEEISDVLRCSVEELEKVRQ 70 (76)
T ss_dssp HCTTSSTTCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred hcCCCCCCCCCHHHHHHHcCCCHHHHHHHHH
Confidence 4677898888999999999999999999886
Done!