Query 028213
Match_columns 212
No_of_seqs 212 out of 1139
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.1E-38 2.5E-43 272.2 21.6 176 12-198 132-335 (365)
2 KOG0697 Protein phosphatase 1B 100.0 4.5E-35 9.8E-40 233.9 16.2 169 17-196 95-294 (379)
3 COG0631 PTC1 Serine/threonine 100.0 8.1E-35 1.8E-39 239.4 17.5 174 2-196 60-255 (262)
4 KOG0698 Serine/threonine prote 100.0 5.2E-34 1.1E-38 241.8 21.5 174 17-201 112-312 (330)
5 PTZ00224 protein phosphatase 2 100.0 1.2E-33 2.5E-38 242.3 20.6 162 20-196 83-274 (381)
6 PF00481 PP2C: Protein phospha 100.0 4.8E-34 1E-38 234.2 12.6 157 18-185 70-254 (254)
7 cd00143 PP2Cc Serine/threonine 100.0 4.4E-30 9.6E-35 209.1 21.0 166 15-192 67-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 8.8E-30 1.9E-34 207.9 20.5 162 17-190 72-255 (255)
9 PRK14559 putative protein seri 100.0 1.3E-29 2.7E-34 228.7 18.6 163 19-196 454-638 (645)
10 KOG0699 Serine/threonine prote 100.0 6.5E-29 1.4E-33 205.1 14.1 145 39-194 325-504 (542)
11 KOG0700 Protein phosphatase 2C 100.0 3.8E-28 8.2E-33 203.8 12.7 154 16-180 166-378 (390)
12 KOG1323 Serine/threonine phosp 99.9 5.4E-26 1.2E-30 186.1 16.6 167 19-196 220-490 (493)
13 KOG1379 Serine/threonine prote 99.8 8.4E-20 1.8E-24 149.2 15.3 171 2-192 129-330 (330)
14 KOG0618 Serine/threonine phosp 99.7 6.7E-18 1.5E-22 154.1 11.1 157 23-197 591-776 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.6 2E-13 4.4E-18 107.1 15.4 124 23-177 66-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.5 1.3E-13 2.7E-18 109.9 6.7 101 40-149 93-196 (212)
17 TIGR02865 spore_II_E stage II 99.4 4E-12 8.8E-17 118.5 16.5 141 24-192 617-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.4 5.7E-11 1.2E-15 93.0 15.9 143 23-193 40-193 (193)
19 COG2208 RsbU Serine phosphatas 98.2 0.00022 4.7E-09 61.7 16.9 137 25-193 214-366 (367)
20 PF09436 DUF2016: Domain of un 66.7 4 8.6E-05 26.8 1.5 20 117-136 23-42 (72)
21 PF06972 DUF1296: Protein of u 59.2 20 0.00043 22.5 3.5 27 134-174 18-44 (60)
22 COG3700 AphA Acid phosphatase 51.7 30 0.00066 27.1 4.3 49 121-180 71-130 (237)
23 cd00534 DHNA_DHNTPE Dihydroneo 48.1 75 0.0016 22.5 5.8 59 126-193 42-101 (118)
24 COG1539 FolB Dihydroneopterin 42.1 1.3E+02 0.0028 21.7 6.7 60 126-196 43-102 (121)
25 TIGR00525 folB dihydroneopteri 41.8 1.2E+02 0.0026 21.3 6.3 60 126-194 41-101 (116)
26 PF01436 NHL: NHL repeat; Int 38.1 59 0.0013 16.6 3.6 21 51-71 8-28 (28)
27 smart00331 PP2C_SIG Sigma fact 32.2 2.2E+02 0.0048 21.4 9.4 76 111-193 19-95 (193)
28 PRK11593 folB bifunctional dih 32.1 1.8E+02 0.004 20.5 6.6 52 126-186 42-93 (119)
29 PF05785 CNF1: Rho-activating 31.9 58 0.0013 27.2 3.3 25 41-66 129-153 (281)
30 PF02152 FolB: Dihydroneopteri 31.9 1.6E+02 0.0035 20.4 5.3 57 128-193 41-98 (113)
31 PF08148 DSHCT: DSHCT (NUC185) 30.9 94 0.002 23.9 4.3 26 128-153 30-55 (180)
32 PF13649 Methyltransf_25: Meth 30.6 96 0.0021 20.8 3.9 25 124-148 70-94 (101)
33 TIGR02276 beta_rpt_yvtn 40-res 30.4 87 0.0019 17.0 3.1 19 55-73 3-21 (42)
34 PRK15322 invasion protein OrgB 28.6 2.1E+02 0.0045 22.8 5.7 47 122-178 148-194 (210)
35 COG2168 DsrH Uncharacterized c 27.8 34 0.00074 23.7 1.1 27 119-145 23-49 (96)
36 COG3315 O-Methyltransferase in 25.5 2.5E+02 0.0055 23.6 6.2 83 65-149 104-197 (297)
37 TIGR03735 PRTRC_A PRTRC system 25.4 44 0.00096 26.3 1.5 63 117-179 22-90 (192)
38 PRK03982 heat shock protein Ht 24.7 1.3E+02 0.0028 25.0 4.3 27 123-149 108-134 (288)
39 PRK03072 heat shock protein Ht 23.4 1.1E+02 0.0024 25.5 3.7 28 123-150 110-137 (288)
40 PRK05457 heat shock protein Ht 23.2 1.4E+02 0.003 24.9 4.2 29 122-150 116-144 (284)
41 PRK02391 heat shock protein Ht 22.7 1.2E+02 0.0026 25.5 3.7 28 123-150 116-143 (296)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.1e-38 Score=272.15 Aligned_cols=176 Identities=34% Similarity=0.502 Sum_probs=153.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCcccccCCCCCCCChh
Q 028213 12 NDGWHRRWEAALCRSYERADDVFKDNS--LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDRED 89 (212)
Q Consensus 12 ~~~~~~~~~~~l~~a~~~~~~~l~~~~--~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~ 89 (212)
...+...+.++|.++|.++|+.+.+.. .....||||++++++.++++|++||||||+|++++|++++||.||++.++.
T Consensus 132 ~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~ 211 (365)
T PLN03145 132 DEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSK 211 (365)
T ss_pred hhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHH
Confidence 344556788999999999999998753 233469999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-------------------cCCCCCCC-------ccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHH
Q 028213 90 EVARITN-------------------GGDHDLKP-------WVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKL 143 (212)
Q Consensus 90 e~~ri~~-------------------lG~~~~k~-------~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i 143 (212)
|+.||.. |||..+|. .++++|++..+++.++++|||||||||||+|+++++.++
T Consensus 212 E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~ 291 (365)
T PLN03145 212 ERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDF 291 (365)
T ss_pred HHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHH
Confidence 9999885 78766542 367899999999988899999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCcc
Q 028213 144 ARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIR 198 (212)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~~~ 198 (212)
+++.+.+ ..+++.+|+.|++.|+.+|+.||+|||||+|+...++
T Consensus 292 i~~~l~~-----------~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~ 335 (365)
T PLN03145 292 ARRRLQE-----------HNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPP 335 (365)
T ss_pred HHHHHhc-----------CCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCc
Confidence 8877654 3478999999999999999999999999999975433
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-35 Score=233.93 Aligned_cols=169 Identities=34% Similarity=0.521 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHHHH
Q 028213 17 RRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVAR 93 (212)
Q Consensus 17 ~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~r 93 (212)
++++.-|+..|.++++.+...+ ....++|||++++++...++|++|+||||++++|+|....-|.||+|.+|.|++|
T Consensus 95 ~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeR 174 (379)
T KOG0697|consen 95 ENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKER 174 (379)
T ss_pred HHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHH
Confidence 3888999999999999998775 3345699999999999999999999999999999999999999999999999999
Q ss_pred HHh-------------------cCCCCCCC---------ccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHH
Q 028213 94 ITN-------------------GGDHDLKP---------WVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLAR 145 (212)
Q Consensus 94 i~~-------------------lG~~~~k~---------~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~ 145 (212)
|+. |||+.+|. .|+|+|++......+.|+||||+|||+||+|+++|+.++++
T Consensus 175 IqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~ 254 (379)
T KOG0697|consen 175 IQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVK 254 (379)
T ss_pred HhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHH
Confidence 988 99998883 69999999999888889999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 028213 146 YELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (212)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~ 196 (212)
..+.- ..+...+|+.+++.++.+|+.||+|+|+|-|.+-.
T Consensus 255 sRl~V-----------t~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~AP 294 (379)
T KOG0697|consen 255 SRLEV-----------TSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAP 294 (379)
T ss_pred hhhee-----------cccHHHHHHHHHHHHHhccCccCceEEEEecCCCC
Confidence 87765 46799999999999999999999999999997544
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-35 Score=239.43 Aligned_cols=174 Identities=31% Similarity=0.465 Sum_probs=148.6
Q ss_pred chhHhhhhhCCCch---HHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCc
Q 028213 2 VAEEWGREAGNDGW---HRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQ 75 (212)
Q Consensus 2 ~~e~l~~~~~~~~~---~~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~ 75 (212)
+++.|.+.+....+ ...+.+.|.+++..+|+.+.... ....+||||++++++.++++|+|||||||+|++|+|.
T Consensus 60 ~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~ 139 (262)
T COG0631 60 AVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGE 139 (262)
T ss_pred HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCc
Confidence 45666676633221 22278999999999999999875 4568999999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHh----------------cCCCCCCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHH
Q 028213 76 AIPLTVDHKLDREDEVARITN----------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDD 139 (212)
Q Consensus 76 ~~~lt~dH~~~~~~e~~ri~~----------------lG~~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~e 139 (212)
+++||.||++.+..+..++.. ||+... ..|++....+.++ +|+|||||||||.+++++
T Consensus 140 ~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~~ltralG~~~~-----~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~ 213 (262)
T COG0631 140 LKQLTEDHSLVNRLEQRGIITPEEARSHPRRNALTRALGDFDL-----LEPDITELELEPG-DFLLLCSDGLWDVVSDDE 213 (262)
T ss_pred eEEeccCCcHHHHHHHhcCCCHHHHHhCccchhhhhhcCCCcc-----cceeEEEEEcCCC-CEEEEECCCCccCcCHHH
Confidence 999999999998777766322 777552 5899999987776 799999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 028213 140 AVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (212)
Q Consensus 140 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~ 196 (212)
+.+++.. ..+++.+++.|++.|+.+|+.||+|+++|.+....
T Consensus 214 i~~il~~---------------~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 214 IVDILKN---------------SETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHhc---------------CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 9999985 46899999999999999999999999999998654
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-34 Score=241.79 Aligned_cols=174 Identities=45% Similarity=0.585 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHH-HHHHHHhhcCCCCCCCCceEEEEEEeCC-EEEEEeccCccEEEEeCC-cccccCCCCCCCChhHHHH
Q 028213 17 RRWEAALCRSYE-RADDVFKDNSLAPYSVGTTALVAILSPC-QIIASNCGDSRVVLSRGK-QAIPLTVDHKLDREDEVAR 93 (212)
Q Consensus 17 ~~~~~~l~~a~~-~~~~~l~~~~~~~~~~GtT~~~~~i~~~-~~~~anvGDSr~~l~~~~-~~~~lt~dH~~~~~~e~~r 93 (212)
..+..++.++|. +++..+.++......+|||++++++.++ ++|+||+||||+++++.| ..++||.||+|..+.|+.|
T Consensus 112 ~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~R 191 (330)
T KOG0698|consen 112 QDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERER 191 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHH
Confidence 468999999999 6999999763224678888888888855 999999999999999866 7999999999999999999
Q ss_pred HHh-----------------------cCCCCCC-CccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHH
Q 028213 94 ITN-----------------------GGDHDLK-PWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELR 149 (212)
Q Consensus 94 i~~-----------------------lG~~~~k-~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~ 149 (212)
|+. |||..+| +.++++|++....+...++||||+||||||+++++++.++++..+.
T Consensus 192 I~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~ 271 (330)
T KOG0698|consen 192 IEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELA 271 (330)
T ss_pred HHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhh
Confidence 988 8999999 8999999999998889899999999999999999999999998662
Q ss_pred hccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCccccc
Q 028213 150 RRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSLQ 201 (212)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~~~~~~ 201 (212)
. ...+..++..|...|..+|+.||+|||||.|.+.......
T Consensus 272 ~-----------~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 272 S-----------ISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred c-----------cccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccccccC
Confidence 2 4578999999999999999999999999999987654333
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.2e-33 Score=242.29 Aligned_cols=162 Identities=30% Similarity=0.417 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEe-CCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHHHHHHh--
Q 028213 20 EAALCRSYERADDVFKDNSLAPYSVGTTALVAILS-PCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITN-- 96 (212)
Q Consensus 20 ~~~l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~-~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~-- 96 (212)
.+.|.++|..+|+.+.+.. ..+|||++++++. ++++|++||||||+|++|+|++++||.||++.++.|+.||..
T Consensus 83 ~~~l~~a~~~~d~~i~~~~---~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~g 159 (381)
T PTZ00224 83 DERMEELCLEIDEEWMDSG---REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACG 159 (381)
T ss_pred HHHHHHHHHHHHHHHHhcc---cCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHcc
Confidence 3458899999999998653 2469999998876 679999999999999999999999999999999999988765
Q ss_pred -----------------cCCCCCC---------CccccCCceEEEEecCCCeEEEEEcCCccc-cCCHHHHHHHHHHHHH
Q 028213 97 -----------------GGDHDLK---------PWVIAEPEVTFMTRSEDDEFLILASDGLWD-VMSSDDAVKLARYELR 149 (212)
Q Consensus 97 -----------------lG~~~~k---------~~v~~~p~i~~~~~~~~~~~lil~SDGl~d-~l~~~ei~~i~~~~~~ 149 (212)
||+..+| +.+++.|++..+.+.+ +++|||||||||| +++++++.+++.+.+.
T Consensus 160 g~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~ 238 (381)
T PTZ00224 160 GRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLE 238 (381)
T ss_pred CEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHh
Confidence 7876543 2466899999987665 5599999999999 8999999999986554
Q ss_pred hccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 028213 150 RRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (212)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~ 196 (212)
. ..+++.+|+.|++.|+.+|+.||+|||||++...+
T Consensus 239 ~-----------~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 239 T-----------CDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred c-----------CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 3 35689999999999999999999999999998654
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4.8e-34 Score=234.17 Aligned_cols=157 Identities=43% Similarity=0.586 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHH-HHHHHhhcC-C-CCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCccc-ccCCCCCCCChhHHHH
Q 028213 18 RWEAALCRSYER-ADDVFKDNS-L-APYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAI-PLTVDHKLDREDEVAR 93 (212)
Q Consensus 18 ~~~~~l~~a~~~-~~~~l~~~~-~-~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~-~lt~dH~~~~~~e~~r 93 (212)
.+.++|..+|.+ ++..+.... . ....+|||++++++.++++|+|||||||+|+++.+... +||.||+|.++.|+.|
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~R 149 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERER 149 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHH
T ss_pred chhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccce
Confidence 688999999999 898888732 1 45789999999999999999999999999999999888 9999999999999999
Q ss_pred HHh--------------------cCCCCCCC----ccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHH
Q 028213 94 ITN--------------------GGDHDLKP----WVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELR 149 (212)
Q Consensus 94 i~~--------------------lG~~~~k~----~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~ 149 (212)
|.. |||..+|+ +++++|++..+++.+++.|||||||||||+|+++++.+++.....
T Consensus 150 I~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~ 229 (254)
T PF00481_consen 150 IRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLN 229 (254)
T ss_dssp HHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHH
T ss_pred eeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHh
Confidence 987 89999998 999999999999999888999999999999999999999998765
Q ss_pred hccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCe
Q 028213 150 RRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNI 185 (212)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNi 185 (212)
. ...|+.+|+.|++.|+.+|+.|||
T Consensus 230 ~-----------~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 230 S-----------GRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp H-----------HSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred c-----------CCcHHHHHHHHHHHHHhcCCCCCC
Confidence 4 235899999999999999999997
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=4.4e-30 Score=209.09 Aligned_cols=166 Identities=46% Similarity=0.636 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHH
Q 028213 15 WHRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEV 91 (212)
Q Consensus 15 ~~~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~ 91 (212)
....+...|.++|..+|+.+.... .....+|||++++++.+++++++|+||||+|++++++++++|.||++.++.+.
T Consensus 67 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~ 146 (254)
T cd00143 67 SEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEER 146 (254)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHH
Confidence 366788999999999999998865 24578999999999999999999999999999999999999999999987777
Q ss_pred HHHHh-------------------cCCCCCCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhcc
Q 028213 92 ARITN-------------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRR 152 (212)
Q Consensus 92 ~ri~~-------------------lG~~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~ 152 (212)
.|+.. +|+..+++.+.+.|++..+.+.+.+++|||||||||++++++++.+++.....
T Consensus 147 ~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~--- 223 (254)
T cd00143 147 ERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELA--- 223 (254)
T ss_pred HHHHHcCCcEEeCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhc---
Confidence 77654 56655555578899999888756677999999999999999999999986310
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEc
Q 028213 153 RLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDL 192 (212)
Q Consensus 153 ~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l 192 (212)
..+++.+|+.|++.|..+++.||+|+|++++
T Consensus 224 ---------~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 224 ---------KEDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred ---------ccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 0268999999999999999999999999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=8.8e-30 Score=207.91 Aligned_cols=162 Identities=43% Similarity=0.632 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHHHH
Q 028213 17 RRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVAR 93 (212)
Q Consensus 17 ~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~r 93 (212)
..+.+.|.+++..+++.+.... .....+|||++++++.++++|++|+||||+|+++++++.+||.||++.++.+..|
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~ 151 (255)
T smart00332 72 EDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERAR 151 (255)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHH
Confidence 4688889999999999998865 2235799999999999999999999999999999999999999999998888888
Q ss_pred HHh-------------------cCCCCCCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCC
Q 028213 94 ITN-------------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRL 154 (212)
Q Consensus 94 i~~-------------------lG~~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~ 154 (212)
+.. +|+..+++.+.+.|++...++.+.+++|||||||||++++++++.+++......
T Consensus 152 i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~---- 227 (255)
T smart00332 152 IEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK---- 227 (255)
T ss_pred HHHcCCEEECCeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhc----
Confidence 763 677667778888999998876566779999999999999999999999864210
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 028213 155 PEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIV 190 (212)
Q Consensus 155 ~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv 190 (212)
.++..+|+.|++.|..+++.||+|+||+
T Consensus 228 --------~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 228 --------SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 1589999999999999999999999985
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.97 E-value=1.3e-29 Score=228.70 Aligned_cols=163 Identities=25% Similarity=0.313 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC-----CCCCCCCceEEEEEEeCCEEEEEeccCccEEEE-eCCcccccCCCCCCCChhHHH
Q 028213 19 WEAALCRSYERADDVFKDNS-----LAPYSVGTTALVAILSPCQIIASNCGDSRVVLS-RGKQAIPLTVDHKLDREDEVA 92 (212)
Q Consensus 19 ~~~~l~~a~~~~~~~l~~~~-----~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~-~~~~~~~lt~dH~~~~~~e~~ 92 (212)
..+.|.++|..+|+.+.+.. ....+||||++++++.++++|++||||||+|++ ++|++++||.||++.+.....
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~ 533 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQR 533 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHh
Confidence 35679999999999998753 134579999999999999999999999999998 468999999999997542221
Q ss_pred HH---------------HhcCCCCCCCccccCCceEEEEecCCCeEEEEEcCCcccc-CCHHHHHHHHHHHHHhccCCCC
Q 028213 93 RI---------------TNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDV-MSSDDAVKLARYELRRRRRLPE 156 (212)
Q Consensus 93 ri---------------~~lG~~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~-l~~~ei~~i~~~~~~~~~~~~~ 156 (212)
.+ ++||+...+ ..+|++..+.+.+ +++||||||||||+ +....+.+.+...+..
T Consensus 534 Gi~~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~------ 603 (645)
T PRK14559 534 GVEPQIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLSS------ 603 (645)
T ss_pred CCCHHHHhcCcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHhc------
Confidence 11 117764322 2479998887765 56999999999994 2333333333333332
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 028213 157 KGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (212)
Q Consensus 157 ~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~ 196 (212)
..++..++++|++.|+.+|+.||+|+|||+++...
T Consensus 604 -----~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 604 -----SANLDQGLNKLIDLANQYNGHDNITAILVRLKVRP 638 (645)
T ss_pred -----CCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCC
Confidence 45789999999999999999999999999997443
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-29 Score=205.06 Aligned_cols=145 Identities=36% Similarity=0.571 Sum_probs=133.4
Q ss_pred CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHHHHHHh--------------------cC
Q 028213 39 LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITN--------------------GG 98 (212)
Q Consensus 39 ~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~--------------------lG 98 (212)
.....+|||+++|++.++++||||.||||+++.|+|+.+-+|.||+|..+.|..||.+ ||
T Consensus 325 ePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~G 404 (542)
T KOG0699|consen 325 EPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFG 404 (542)
T ss_pred CCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999987 89
Q ss_pred CCCCCC---------ccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Q 028213 99 DHDLKP---------WVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAA 169 (212)
Q Consensus 99 ~~~~k~---------~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a 169 (212)
|+.||. .|++-|+|....+++.+.|+|++|||||++|+.+++.++++..+.. ......+|
T Consensus 405 DHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~-----------n~~ls~ic 473 (542)
T KOG0699|consen 405 DHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAK-----------NSSLSEIC 473 (542)
T ss_pred hhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhc-----------CchHHHHH
Confidence 998883 6889999999999999999999999999999999999999988875 45688999
Q ss_pred HHHHHHHHhCC------CCCCeEEEEEEcCC
Q 028213 170 EELVKIAYDAF------STDNISVVIVDLKA 194 (212)
Q Consensus 170 ~~L~~~A~~~g------~~DNiTvivv~l~~ 194 (212)
+.|.+.++.-. ++||+|||++.|+.
T Consensus 474 eeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 474 EELCDACLAPSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred HHHHHhhcCCCCCCCCcCCCcceEEEEEecc
Confidence 99999998742 69999999999983
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=3.8e-28 Score=203.80 Aligned_cols=154 Identities=35% Similarity=0.538 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEe---CC---cccccCCC
Q 028213 16 HRRWEAALCRSYERADDVFKDNS-------LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSR---GK---QAIPLTVD 82 (212)
Q Consensus 16 ~~~~~~~l~~a~~~~~~~l~~~~-------~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~---~~---~~~~lt~d 82 (212)
...+.++|.+||.++++.+.... ..-.-+|||+++.++.++.+||||+|||||++.+ ++ ..+|||.|
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~d 245 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTD 245 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChh
Confidence 67899999999999999997653 3446899999999999999999999999999964 23 46899999
Q ss_pred CCCCChhHHHHHHh-------------------------cCCCCCC---------------------CccccCCceEEEE
Q 028213 83 HKLDREDEVARITN-------------------------GGDHDLK---------------------PWVIAEPEVTFMT 116 (212)
Q Consensus 83 H~~~~~~e~~ri~~-------------------------lG~~~~k---------------------~~v~~~p~i~~~~ 116 (212)
|+..++.|+.||.. |||..+| |+++++|.++.+.
T Consensus 246 Hn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~Hr 325 (390)
T KOG0700|consen 246 HNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHK 325 (390)
T ss_pred hccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEE
Confidence 99999999999988 7877766 6899999999999
Q ss_pred ecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
Q 028213 117 RSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAF 180 (212)
Q Consensus 117 ~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g 180 (212)
+.+.|.|+||+|||||++|+++|+.+++...+... ..-+.+|.+|+++|+.+.
T Consensus 326 L~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~-----------~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 326 LTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK-----------FPDGNPATHLIRHALGRA 378 (390)
T ss_pred cCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC-----------CCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999865431 233678999999998754
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-26 Score=186.11 Aligned_cols=167 Identities=32% Similarity=0.467 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCCCCCCceEEEEEEeCCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHHHHHHh-
Q 028213 19 WEAALCRSYERADDVFKDNS-LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITN- 96 (212)
Q Consensus 19 ~~~~l~~a~~~~~~~l~~~~-~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~- 96 (212)
+..+|+.||+.+++++.... .....+|||+.+++..-+++|++|.||||++++|++++.+||.+.+|. .|++|++.
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~L 297 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQEL 297 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHH
Confidence 68899999999999999865 456689999999999999999999999999999999999999999997 66777665
Q ss_pred -------------------------------------------------------------------------cCCCCC-
Q 028213 97 -------------------------------------------------------------------------GGDHDL- 102 (212)
Q Consensus 97 -------------------------------------------------------------------------lG~~~~- 102 (212)
+||+.+
T Consensus 298 af~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lk 377 (493)
T KOG1323|consen 298 AFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLK 377 (493)
T ss_pred hhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceee
Confidence 777654
Q ss_pred --------CCccccCCceEEEEec----CCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcH---HH
Q 028213 103 --------KPWVIAEPEVTFMTRS----EDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPA---CG 167 (212)
Q Consensus 103 --------k~~v~~~p~i~~~~~~----~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~---~~ 167 (212)
||++++.|+++.+++. ..|+++||+||||||+++++++..+++..+..+. ..+| ..
T Consensus 378 v~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~d---------p~Dp~RYt~ 448 (493)
T KOG1323|consen 378 VVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTD---------PADPSRYTQ 448 (493)
T ss_pred eecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCC---------CCChhHHHH
Confidence 4899999999998763 4567999999999999999999999999887653 2333 55
Q ss_pred HHHHHHHHHHh-------------CCCCCCeEEEEEEcCCCC
Q 028213 168 AAEELVKIAYD-------------AFSTDNISVVIVDLKAPR 196 (212)
Q Consensus 168 ~a~~L~~~A~~-------------~g~~DNiTvivv~l~~~~ 196 (212)
+|+.|+..|.. -|+.|+|||.||.+....
T Consensus 449 aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~~ 490 (493)
T KOG1323|consen 449 AAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYCA 490 (493)
T ss_pred HHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCCC
Confidence 78888877754 247999999999998654
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.84 E-value=8.4e-20 Score=149.23 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=120.7
Q ss_pred chhHhhhhhCCCc-hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEe--CCEEEEEeccCccEEEEeCCcccc
Q 028213 2 VAEEWGREAGNDG-WHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRGKQAIP 78 (212)
Q Consensus 2 ~~e~l~~~~~~~~-~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~~~~~~ 78 (212)
|+.+.++..+..+ .+.++...|.+|+.++ .++ ....-++||++++.+. +++||+||+|||...++|+|++++
T Consensus 129 LM~~ce~~v~~~~~~~~~P~~lL~~ay~~l----~~~-~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~ 203 (330)
T KOG1379|consen 129 LMSNCERLVQNSDFNPSDPVNLLEKAYAEL----KSQ-KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVF 203 (330)
T ss_pred HHHHHHHHhcccccCCCChHHHHHHHHHHH----hhc-CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEE
Confidence 4556666664444 4558899888888654 333 2334578888888888 899999999999999999999888
Q ss_pred cCCCCCC--CChhHHHHHHhcCCCCCCCccc---cCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccC
Q 028213 79 LTVDHKL--DREDEVARITNGGDHDLKPWVI---AEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRR 153 (212)
Q Consensus 79 lt~dH~~--~~~~e~~ri~~lG~~~~k~~v~---~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~ 153 (212)
-|..+.. ..|-+.. ++-..+..++. ...+...+++.++ |+|||+||||||+|.+++|.+++.......
T Consensus 204 ~S~~Q~H~FN~PyQLs----~~p~~~~~~~~d~p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~-- 276 (330)
T KOG1379|consen 204 RSPEQQHYFNTPYQLS----SPPEGYSSYISDVPDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARG-- 276 (330)
T ss_pred cCchheeccCCceeec----cCCccccccccCCccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccc--
Confidence 8875433 3222211 11111111112 2345566766554 599999999999999999999998765421
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhC-----------------------CCCCCeEEEEEEc
Q 028213 154 LPEKGDTPSSPACGAAEELVKIAYDA-----------------------FSTDNISVVIVDL 192 (212)
Q Consensus 154 ~~~~~~~~~~~~~~~a~~L~~~A~~~-----------------------g~~DNiTvivv~l 192 (212)
..+++..|+.+++.|... |+.|+|||||..+
T Consensus 277 --------~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 277 --------NLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred --------cccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 467899999999998762 5699999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=6.7e-18 Score=154.12 Aligned_cols=157 Identities=27% Similarity=0.409 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEEEeC--------CEEEEEeccCccEEEEeCCcccccCCCC-CCCChhHHHH
Q 028213 23 LCRSYERADDVFKDNSLAPYSVGTTALVAILSP--------CQIIASNCGDSRVVLSRGKQAIPLTVDH-KLDREDEVAR 93 (212)
Q Consensus 23 l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~~--------~~~~~anvGDSr~~l~~~~~~~~lt~dH-~~~~~~e~~r 93 (212)
+.++|...|+++... ....|..++.+.+.. .++++||+|+|.++++++|+..++|+-. ....++|.+|
T Consensus 591 mr~~fl~~~rklg~~---g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 591 MRNTFLRLNRKLGEE---GQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHHHhhhhhhh---hccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 899999999999654 345566666666653 3789999999999999999988888755 4458999999
Q ss_pred HHh--------------------cCCCCCCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccC
Q 028213 94 ITN--------------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRR 153 (212)
Q Consensus 94 i~~--------------------lG~~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~ 153 (212)
|.. +|...+.|.+.+.|++....+.+.|+|||+|+-+||++|+-+++.+.++.
T Consensus 668 I~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn------- 740 (1081)
T KOG0618|consen 668 IVDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRN------- 740 (1081)
T ss_pred HHHhcCeecCCCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhc-------
Confidence 977 78878889999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCc
Q 028213 154 LPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRI 197 (212)
Q Consensus 154 ~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~~ 197 (212)
..+|-.||++|.+.|...|..||++|+||++.....
T Consensus 741 --------~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 741 --------VEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred --------CCchHHHHHHHHHHHHhcccccCeeEEEEEeecchh
Confidence 678999999999999999999999999999986543
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.56 E-value=2e-13 Score=107.12 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEEE--eCCEEEEEeccCccEEEEe-CCcccccCCCCCCCChhHHHHHHhcCC
Q 028213 23 LCRSYERADDVFKDNSLAPYSVGTTALVAIL--SPCQIIASNCGDSRVVLSR-GKQAIPLTVDHKLDREDEVARITNGGD 99 (212)
Q Consensus 23 l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i--~~~~~~~anvGDSr~~l~~-~~~~~~lt~dH~~~~~~e~~ri~~lG~ 99 (212)
+.+.+..+|+.+... ....+|+|++++++ ..++++++|+||+|+|+++ ++...+++.+..+. +|.
T Consensus 66 ~~~~l~~~n~~l~~~--~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~~----------lG~ 133 (193)
T smart00331 66 LSQILERLNRAIYEN--GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGAP----------LGL 133 (193)
T ss_pred HHHHHHHHHHHHHhc--CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCce----------eee
Confidence 556677888888775 34568999999998 5789999999999999999 56665666554332 554
Q ss_pred CCCCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHH
Q 028213 100 HDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAY 177 (212)
Q Consensus 100 ~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~ 177 (212)
.. ...++...+++.++ +.|+|+|||||+.++.+++.+++.+.. ..+++.+++.+.+.+.
T Consensus 134 ~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~-------------~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 134 EP-----DVEVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELL-------------GSPPAEIAQRILEELL 192 (193)
T ss_pred CC-----CCcceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhc-------------CCCHHHHHHHHHHHHh
Confidence 32 12355666655555 588999999999999999998888642 3468888888877654
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.46 E-value=1.3e-13 Score=109.89 Aligned_cols=101 Identities=24% Similarity=0.319 Sum_probs=57.1
Q ss_pred CCCCCCceEEEEEEeCCEEEEEeccCccEEE-EeCCcccccCCCCCCCChhHHHHHH-hcCCCCCCCccccCCceEEEEe
Q 028213 40 APYSVGTTALVAILSPCQIIASNCGDSRVVL-SRGKQAIPLTVDHKLDREDEVARIT-NGGDHDLKPWVIAEPEVTFMTR 117 (212)
Q Consensus 40 ~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l-~~~~~~~~lt~dH~~~~~~e~~ri~-~lG~~~~k~~v~~~p~i~~~~~ 117 (212)
....++||++++++.++.++++|+||||+|+ .++|.+..++.+|+.. ..... .+... ......++..+++
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~ 164 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE----YPNQTRSLTGD----DPEPDVQYGSIPL 164 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH----HHHCTTSCCHH----CCCTETEEEEEE-
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch----hhhhhhccCcc----ccccCCeEEEEEc
Confidence 4567899999999999999999999999975 5789999999998622 21110 01111 1111234444543
Q ss_pred cCCCeEEEEEcCCccccCCHHH-HHHHHHHHHH
Q 028213 118 SEDDEFLILASDGLWDVMSSDD-AVKLARYELR 149 (212)
Q Consensus 118 ~~~~~~lil~SDGl~d~l~~~e-i~~i~~~~~~ 149 (212)
..++.|+|||||||+.+...+ +..++.+.+.
T Consensus 165 -~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 165 -EEGDVILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp --TT-EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred -CCCCEEEEECcCccccCCCHHHHHHHhhhccc
Confidence 445588999999999998654 6777765543
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.44 E-value=4e-12 Score=118.50 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCceEEEEEEe--CCEEEEEeccCccEEEEeCCcccccCCCCCCCChhHHHHHHhcCCCC
Q 028213 24 CRSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHD 101 (212)
Q Consensus 24 ~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~lG~~~ 101 (212)
..++..+|..+... ....+++|+.+++++ .+++.++|+|+++.|+.|++.+.+++..+.| +|-..
T Consensus 617 ~~ai~~lN~~L~~~--~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP-----------lGil~ 683 (764)
T TIGR02865 617 EVAIKTVNSILSLR--STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP-----------IGILD 683 (764)
T ss_pred HHHHHHHHHHHHhC--CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce-----------eEecc
Confidence 55778888887654 234578999999995 6899999999999999999988888776554 33211
Q ss_pred CCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHH-HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
Q 028213 102 LKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDD-AVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAF 180 (212)
Q Consensus 102 ~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~e-i~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g 180 (212)
..+++....++.+ +|+++|+|||+||..++.+ -.+.+.+.+++.. ..+|+++++.|++.+....
T Consensus 684 -----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~---------~~~p~ela~~Il~~a~~~~ 748 (764)
T TIGR02865 684 -----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETN---------TNDPEEIAEYLLEKAKELR 748 (764)
T ss_pred -----CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhc
Confidence 1245555665555 5589999999999886533 1222333333222 4579999999999998643
Q ss_pred ---CCCCeEEEEEEc
Q 028213 181 ---STDNISVVIVDL 192 (212)
Q Consensus 181 ---~~DNiTvivv~l 192 (212)
..||+|++++++
T Consensus 749 ~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 749 SGKIKDDMTVIVAKV 763 (764)
T ss_pred CCCCCCCeEEEEEEe
Confidence 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.36 E-value=5.7e-11 Score=92.99 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEEEe--CCEEEEEeccCccEEEEeC--CcccccCCCCCCCChhHHHHHHhcC
Q 028213 23 LCRSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRG--KQAIPLTVDHKLDREDEVARITNGG 98 (212)
Q Consensus 23 l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~--~~~~~lt~dH~~~~~~e~~ri~~lG 98 (212)
..+.+..+|+.+.... .....++|++++.+. .+.++++|+|+++++++++ +....+.....| +|
T Consensus 40 p~~~l~~ln~~l~~~~-~~~~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-----------lG 107 (193)
T PF07228_consen 40 PEELLEALNRRLYRDL-KGDNRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP-----------LG 107 (193)
T ss_dssp HHHHHHHHHHHHHHHT-TTTSTTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB-----------CS
T ss_pred HHHHHHHHHHHHHHHh-hhccccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc-----------ee
Confidence 4566777788875542 112478888888875 5789999999999999998 334444443333 34
Q ss_pred CCCCCCccccCCceEEEEecCCCeEEEEEcCCccccCCHHHHH----HHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHH
Q 028213 99 DHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAV----KLARYELRRRRRLPEKGDTPSSPACGAAEELVK 174 (212)
Q Consensus 99 ~~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~----~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~ 174 (212)
-.. ...+....+++ +.++.|+|+||||++....+.-. .+. +.+.+.. ..+++.+++.|++
T Consensus 108 ~~~-----~~~~~~~~~~l-~~gd~l~l~TDGl~e~~~~~~~~~~~~~~~-~~l~~~~---------~~~~~~~~~~l~~ 171 (193)
T PF07228_consen 108 IFE-----DIDYQEQEIQL-EPGDRLLLYTDGLFEALNEDGEFFGEERLL-ELLDENR---------GLSPQEIIDALLE 171 (193)
T ss_dssp SSC-----TTCEEEEEEE---TTEEEEEECHHHCTTTCHHCHHCCCHHHH-HHHHCHT---------TS-HHHHHHHHHH
T ss_pred eec-----cccccceEEEe-ccccEEEEeCCChhhccCCccchhHHHHHH-HHHhhcc---------CCCHHHHHHHHHH
Confidence 321 01333444544 44668999999999998544322 222 2232221 5678999999999
Q ss_pred HHHhC---CCCCCeEEEEEEcC
Q 028213 175 IAYDA---FSTDNISVVIVDLK 193 (212)
Q Consensus 175 ~A~~~---g~~DNiTvivv~l~ 193 (212)
.+... ...||+|+++++++
T Consensus 172 ~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 172 AIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHHHhcCCCCCCceEEEEEEEC
Confidence 88873 47999999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.15 E-value=0.00022 Score=61.66 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceEEEEEEe--CCEEEEEeccCccEEEEeCCcc---cccCCCCCCCChhHHHHHHhcCC
Q 028213 25 RSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRGKQA---IPLTVDHKLDREDEVARITNGGD 99 (212)
Q Consensus 25 ~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~~~~---~~lt~dH~~~~~~e~~ri~~lG~ 99 (212)
..+..+|+.+.... ...+-+|+...+++ .+.+.++|+|=-..++++.+.. ..+...-.| +|-
T Consensus 214 ~~l~~~n~~~~~~~--~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g~p-----------iG~ 280 (367)
T COG2208 214 DVLETLNRVLKQNL--EEDMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTALGLP-----------IGL 280 (367)
T ss_pred HHHHHHHHHHHhcc--cCCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCCCce-----------eee
Confidence 34566677777653 22388888888886 6799999999999999987542 333332222 333
Q ss_pred CCCCCccccCCceEEEEecCCCeEEEEEcCCccc-------cCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHH
Q 028213 100 HDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWD-------VMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEEL 172 (212)
Q Consensus 100 ~~~k~~v~~~p~i~~~~~~~~~~~lil~SDGl~d-------~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L 172 (212)
.. . ..+.+....+.+ ||+++|.|||+++ .+..+....++.... ..+++++++.+
T Consensus 281 ~~---~--~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~i 341 (367)
T COG2208 281 LP---D--YQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLL-------------GQPAEEILEAI 341 (367)
T ss_pred cC---C--ccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHh-------------CCCHHHHHHHH
Confidence 11 1 133444454555 6699999999999 466666666666421 45678888887
Q ss_pred HHHHHh----CCCCCCeEEEEEEcC
Q 028213 173 VKIAYD----AFSTDNISVVIVDLK 193 (212)
Q Consensus 173 ~~~A~~----~g~~DNiTvivv~l~ 193 (212)
.+.... ....||+|++++++.
T Consensus 342 ~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 342 LESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHhhCCccccCceEEEEEEec
Confidence 776654 235788999999975
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=66.66 E-value=4 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=15.6
Q ss_pred ecCCCeEEEEEcCCccccCC
Q 028213 117 RSEDDEFLILASDGLWDVMS 136 (212)
Q Consensus 117 ~~~~~~~lil~SDGl~d~l~ 136 (212)
+...|..+++++||+|=.+.
T Consensus 23 l~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred cccCCcEEEEecCcEEEEEe
Confidence 45577788999999997554
No 21
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=59.20 E-value=20 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHH
Q 028213 134 VMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVK 174 (212)
Q Consensus 134 ~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~ 174 (212)
.-++++|..++.++ ..+|.+++++|+.
T Consensus 18 ~hse~eIya~L~ec--------------nMDpnea~qrLL~ 44 (60)
T PF06972_consen 18 CHSEEEIYAMLKEC--------------NMDPNEAVQRLLS 44 (60)
T ss_pred CCCHHHHHHHHHHh--------------CCCHHHHHHHHHh
Confidence 35789999999987 7899999999985
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=51.67 E-value=30 Score=27.08 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=31.0
Q ss_pred CeEEEEEcCCccc---cCCH--------HHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
Q 028213 121 DEFLILASDGLWD---VMSS--------DDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAF 180 (212)
Q Consensus 121 ~~~lil~SDGl~d---~l~~--------~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g 180 (212)
||-++..|.|+|. ++++ +..=+.+. ++++. ..=|.+.|..|++.-..||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn---------~g~D~--~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVN---------NGWDE--FSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHh---------cCCcc--ccchHHHHHHHHHHHHhcC
Confidence 5578999999993 3443 33322222 12222 3458999999998877776
No 23
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=48.09 E-value=75 Score=22.45 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=42.0
Q ss_pred EEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCeEEEEEEcC
Q 028213 126 LASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDA-FSTDNISVVIVDLK 193 (212)
Q Consensus 126 l~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~-g~~DNiTvivv~l~ 193 (212)
-.||.+-+.++-..+.+.+...+.... ....+.+|..+.+..+.. .....+++-|-+..
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~---------~~llE~La~~ia~~i~~~~~~v~~v~v~v~K~~ 101 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSP---------FKLIETLAEEIADILLEDYPKVSAIKVKVEKPN 101 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCC---------HhHHHHHHHHHHHHHHHhCCCceEEEEEEECCC
Confidence 467888888999999999887766543 446788899999988876 34445555544443
No 24
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=42.11 E-value=1.3e+02 Score=21.70 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=47.7
Q ss_pred EEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 028213 126 LASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (212)
Q Consensus 126 l~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~~~~ 196 (212)
..||-+-|.++-.++.+.+.+..+++. -.-.+..|+.+.+..+.+. ..++.+-+.+.++.
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~---------~~LiE~lA~~ia~~l~~~~--~~v~~~~v~v~KP~ 102 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKR---------FALIETLAEEIADLLLARF--PRVELVEVKVTKPK 102 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCc---------cchHHHHHHHHHHHHHhhC--CccEEEEEEEECCC
Confidence 568889999999999999998887654 4557888999998888764 77787777777554
No 25
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=41.81 E-value=1.2e+02 Score=21.28 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.1
Q ss_pred EEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-CCCeEEEEEEcCC
Q 028213 126 LASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFS-TDNISVVIVDLKA 194 (212)
Q Consensus 126 l~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~-~DNiTvivv~l~~ 194 (212)
-.||.+-+.++-.++.+.+.......+ ....+..|..+.+..+.... .+-+++-+-+...
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~---------~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp~a 101 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKP---------RDLIETVAYRIADRLFADFPQVQRVKVRVSKPNA 101 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHHCCCceEEEEEEEeCCC
Confidence 457889889999999998887766433 34578889999988887643 5556665555543
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=38.06 E-value=59 Score=16.60 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=16.6
Q ss_pred EEEeCCEEEEEeccCccEEEE
Q 028213 51 AILSPCQIIASNCGDSRVVLS 71 (212)
Q Consensus 51 ~~i~~~~~~~anvGDSr~~l~ 71 (212)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344789999999999988654
No 27
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=32.21 E-value=2.2e+02 Score=21.44 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=46.2
Q ss_pred ceEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCeEEEE
Q 028213 111 EVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDA-FSTDNISVVI 189 (212)
Q Consensus 111 ~i~~~~~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~-g~~DNiTviv 189 (212)
|+..+...+++.++++..||.-...........+...+...... ..++..+.+.+-+..... ....-+|+++
T Consensus 19 D~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~-------~~~~~~~l~~~n~~l~~~~~~~~~~T~~~ 91 (193)
T smart00331 19 DFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSE-------GISLSQILERLNRAIYENGEDGMFATLFL 91 (193)
T ss_pred cEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 34434344555688899999998777776666665544432210 235677777666555444 3445677777
Q ss_pred EEcC
Q 028213 190 VDLK 193 (212)
Q Consensus 190 v~l~ 193 (212)
+.++
T Consensus 92 ~~id 95 (193)
T smart00331 92 ALYD 95 (193)
T ss_pred EEEE
Confidence 7763
No 28
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=32.09 E-value=1.8e+02 Score=20.50 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=38.9
Q ss_pred EEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCCeE
Q 028213 126 LASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNIS 186 (212)
Q Consensus 126 l~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiT 186 (212)
-.||.+-+.++-..+.+.+.....+.. ..-.+.+|..+.+..+......-++
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~---------~~LlE~la~~ia~~i~~~~~~~~v~ 93 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGAR---------FALVERVAEEVAELLLARFNSPWVR 93 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCC---------cccHHHHHHHHHHHHHhhCCCcEEE
Confidence 458889999999999999988776543 4567889999998888765433333
No 29
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=31.91 E-value=58 Score=27.16 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=18.9
Q ss_pred CCCCCceEEEEEEeCCEEEEEeccCc
Q 028213 41 PYSVGTTALVAILSPCQIIASNCGDS 66 (212)
Q Consensus 41 ~~~~GtT~~~~~i~~~~~~~anvGDS 66 (212)
..-+|||.+.+ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 45688887766 68999999999987
No 30
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=31.86 E-value=1.6e+02 Score=20.40 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=43.1
Q ss_pred cCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-CCCeEEEEEEcC
Q 028213 128 SDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFS-TDNISVVIVDLK 193 (212)
Q Consensus 128 SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~g~-~DNiTvivv~l~ 193 (212)
+|.+-+.++-..+.+.+.....+.. -...+.+|..+++..+.... .+.+++-+-+..
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~---------f~llE~la~~i~~~i~~~~~~v~~v~v~v~Kp~ 98 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSH---------FNLLETLAERIADRILKEFPQVQSVTVKVRKPS 98 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSE---------ESSHHHHHHHHHHHHHHHTTTESEEEEEEEETT
T ss_pred ccccccccCHHHHHHHHHHHHhcCC---------cccHHHHHHHHHHHHHHhCCCccEEEEEEECCc
Confidence 5888899999999999988777554 45689999999999987643 555555554443
No 31
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=30.92 E-value=94 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=18.2
Q ss_pred cCCccccCCHHHHHHHHHHHHHhccC
Q 028213 128 SDGLWDVMSSDDAVKLARYELRRRRR 153 (212)
Q Consensus 128 SDGl~d~l~~~ei~~i~~~~~~~~~~ 153 (212)
.+|+|+.+++.+++.++.....+.+.
T Consensus 30 ~~g~f~~L~p~elAa~lS~~v~e~~~ 55 (180)
T PF08148_consen 30 FSGVFDDLDPAELAALLSCFVYEPRR 55 (180)
T ss_dssp HCTCCCCS-HHHHHHHHHHHC-----
T ss_pred HcCCCCCCCHHHHHHHHHHhhccccc
Confidence 58999999999999999877665543
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=30.61 E-value=96 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.2
Q ss_pred EEEEcCCccccCCHHHHHHHHHHHH
Q 028213 124 LILASDGLWDVMSSDDAVKLARYEL 148 (212)
Q Consensus 124 lil~SDGl~d~l~~~ei~~i~~~~~ 148 (212)
+|+|+.+.+.+++++++..++++..
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~~~ 94 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRRIA 94 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHHHH
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHH
Confidence 5788888788999999999998653
No 33
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=30.43 E-value=87 Score=16.95 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.4
Q ss_pred CCEEEEEeccCccEEEEeC
Q 028213 55 PCQIIASNCGDSRVVLSRG 73 (212)
Q Consensus 55 ~~~~~~anvGDSr~~l~~~ 73 (212)
++++|++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5678999998888888864
No 34
>PRK15322 invasion protein OrgB; Provisional
Probab=28.58 E-value=2.1e+02 Score=22.82 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=34.3
Q ss_pred eEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 028213 122 EFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYD 178 (212)
Q Consensus 122 ~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~ 178 (212)
..+|+|||-.-=.||+++..+.....+... ..+....|+.|-+.++.
T Consensus 148 ~rFV~~~g~qIaEFsPq~~v~~a~~~l~~~----------~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 148 QRFIMSCGDQIAEFSPEQFVETAVGVIKHH----------LDELPQDCRTISDNAIN 194 (210)
T ss_pred CceEEEeCCchhccCHHHHHHHHHHHHHhC----------ccchHHHHHHHhHHHHH
Confidence 346899998888899999988887766543 23466777777766654
No 35
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=27.81 E-value=34 Score=23.70 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCccccCCHHHHHHHHH
Q 028213 119 EDDEFLILASDGLWDVMSSDDAVKLAR 145 (212)
Q Consensus 119 ~~~~~lil~SDGl~d~l~~~ei~~i~~ 145 (212)
..+|-++|+.||++-.+...+..+-++
T Consensus 23 ~~~D~vlL~qdGV~aAl~~~~~~~sl~ 49 (96)
T COG2168 23 TEGDAVLLLQDGVYAALKGNRYLASLR 49 (96)
T ss_pred cccCeEEEEcccchhhhcCcHHHHHHh
Confidence 344467999999999888877776665
No 36
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.53 E-value=2.5e+02 Score=23.58 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=49.8
Q ss_pred CccEEEEeCCc-ccccCCCCCCCChhHHHHHHhcCCCCCC--CccccCCceEEEE----ec----CCCeEEEEEcCCccc
Q 028213 65 DSRVVLSRGKQ-AIPLTVDHKLDREDEVARITNGGDHDLK--PWVIAEPEVTFMT----RS----EDDEFLILASDGLWD 133 (212)
Q Consensus 65 DSr~~l~~~~~-~~~lt~dH~~~~~~e~~ri~~lG~~~~k--~~v~~~p~i~~~~----~~----~~~~~lil~SDGl~d 133 (212)
|||+|.+.++. +...-.||+...+--.+.+...|...-. ..| -.++...+ +. ....=.++-.-||.-
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~V--a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~ 181 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLV--AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLM 181 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEE--eccccccchHHHHHhcCCCcCCCeEEEeccccc
Confidence 89999999885 8888889988755544455444431100 001 01111000 11 112224566789999
Q ss_pred cCCHHHHHHHHHHHHH
Q 028213 134 VMSSDDAVKLARYELR 149 (212)
Q Consensus 134 ~l~~~ei~~i~~~~~~ 149 (212)
||+++++.+++...-.
T Consensus 182 YL~~~~v~~ll~~I~~ 197 (297)
T COG3315 182 YLPEEAVDRLLSRIAA 197 (297)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999876544
No 37
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=25.39 E-value=44 Score=26.30 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=33.5
Q ss_pred ecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhcc-CCCCC--CC---CCCCcHHHHHHHHHHHHHhC
Q 028213 117 RSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRR-RLPEK--GD---TPSSPACGAAEELVKIAYDA 179 (212)
Q Consensus 117 ~~~~~~~lil~SDGl~d~l~~~ei~~i~~~~~~~~~-~~~~~--~~---~~~~~~~~~a~~L~~~A~~~ 179 (212)
+...+..+++++||+|=.+...-+.-+..-...... ...+. .. .-..=+....++++..|.+.
T Consensus 22 l~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 22 LEKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred cccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 456677889999999987766555444321100000 00000 00 00112567778888888764
No 38
>PRK03982 heat shock protein HtpX; Provisional
Probab=24.69 E-value=1.3e+02 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.9
Q ss_pred EEEEEcCCccccCCHHHHHHHHHHHHH
Q 028213 123 FLILASDGLWDVMSSDDAVKLARYELR 149 (212)
Q Consensus 123 ~lil~SDGl~d~l~~~ei~~i~~~~~~ 149 (212)
-.|..|||+.+.++++|+..++...+-
T Consensus 108 ~~V~vt~gLl~~l~~~El~AVlAHElg 134 (288)
T PRK03982 108 AVVAVTEGILNLLNEDELEGVIAHELT 134 (288)
T ss_pred eEEEeehHHHhhCCHHHHHHHHHHHHH
Confidence 457789999999999999999976554
No 39
>PRK03072 heat shock protein HtpX; Provisional
Probab=23.44 E-value=1.1e+02 Score=25.54 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=23.6
Q ss_pred EEEEEcCCccccCCHHHHHHHHHHHHHh
Q 028213 123 FLILASDGLWDVMSSDDAVKLARYELRR 150 (212)
Q Consensus 123 ~lil~SDGl~d~l~~~ei~~i~~~~~~~ 150 (212)
.+|..|||+.+.++++|+..++...+..
T Consensus 110 ~~v~vt~gLl~~l~~~El~aVlAHElgH 137 (288)
T PRK03072 110 AAVCCTEGILQILNERELRGVLGHELSH 137 (288)
T ss_pred cEEEecHHHHHhCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999766543
No 40
>PRK05457 heat shock protein HtpX; Provisional
Probab=23.15 E-value=1.4e+02 Score=24.90 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.8
Q ss_pred eEEEEEcCCccccCCHHHHHHHHHHHHHh
Q 028213 122 EFLILASDGLWDVMSSDDAVKLARYELRR 150 (212)
Q Consensus 122 ~~lil~SDGl~d~l~~~ei~~i~~~~~~~ 150 (212)
+.+|+.|+|+.+.++++|+..++...+..
T Consensus 116 ~~~V~vt~gLl~~L~~~El~aVlAHElgH 144 (284)
T PRK05457 116 NSLVAVSTGLLQNMSRDEVEAVLAHEISH 144 (284)
T ss_pred CeEEEeehHHhhhCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999876654
No 41
>PRK02391 heat shock protein HtpX; Provisional
Probab=22.68 E-value=1.2e+02 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=23.7
Q ss_pred EEEEEcCCccccCCHHHHHHHHHHHHHh
Q 028213 123 FLILASDGLWDVMSSDDAVKLARYELRR 150 (212)
Q Consensus 123 ~lil~SDGl~d~l~~~ei~~i~~~~~~~ 150 (212)
-+|+.|||+.+.++++|+..++...+..
T Consensus 116 ~~V~vt~gLl~~L~~~El~aVlaHElgH 143 (296)
T PRK02391 116 AVVCVTTGLMRRLDPDELEAVLAHELSH 143 (296)
T ss_pred cEEEecHHHHhhCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999765543
Done!