Query 028214
Match_columns 212
No_of_seqs 175 out of 2725
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2263 Predicted RNA methylas 100.0 7.4E-32 1.6E-36 199.1 22.7 197 3-205 1-197 (198)
2 KOG3420 Predicted RNA methylas 100.0 1.1E-31 2.4E-36 189.1 10.6 184 1-205 1-185 (185)
3 COG4123 Predicted O-methyltran 99.8 2.5E-17 5.4E-22 128.7 16.2 141 21-162 18-182 (248)
4 PF05175 MTS: Methyltransferas 99.7 1.8E-16 3.9E-21 119.1 14.3 109 31-142 17-130 (170)
5 PF03602 Cons_hypoth95: Conser 99.7 7.7E-17 1.7E-21 122.1 12.2 150 25-201 21-183 (183)
6 TIGR02085 meth_trns_rumB 23S r 99.7 1.9E-16 4.1E-21 132.8 14.4 126 26-156 211-340 (374)
7 PRK10909 rsmD 16S rRNA m(2)G96 99.7 4.6E-16 9.9E-21 119.3 14.8 97 26-125 34-133 (199)
8 COG2265 TrmA SAM-dependent met 99.7 2.1E-16 4.4E-21 133.8 13.5 129 24-157 269-403 (432)
9 PRK03522 rumB 23S rRNA methylu 99.7 3.9E-16 8.4E-21 128.3 14.6 126 26-156 151-280 (315)
10 PHA03412 putative methyltransf 99.7 4.8E-16 1.1E-20 120.6 13.6 97 20-126 27-127 (241)
11 COG0742 N6-adenine-specific me 99.7 2E-15 4.3E-20 113.0 15.1 152 26-203 23-186 (187)
12 TIGR00452 methyltransferase, p 99.7 1.6E-15 3.5E-20 123.8 15.5 138 3-142 75-215 (314)
13 COG2890 HemK Methylase of poly 99.7 1.1E-15 2.4E-20 123.2 13.9 127 51-183 113-244 (280)
14 PRK13168 rumA 23S rRNA m(5)U19 99.7 7.8E-16 1.7E-20 132.0 13.4 124 27-156 276-406 (443)
15 TIGR00095 RNA methyltransferas 99.7 3.4E-15 7.4E-20 113.9 14.5 97 26-125 30-133 (189)
16 TIGR00537 hemK_rel_arch HemK-r 99.7 1.1E-14 2.3E-19 110.4 17.0 78 47-126 18-95 (179)
17 PF13659 Methyltransf_26: Meth 99.7 8.5E-16 1.8E-20 108.2 9.8 78 49-126 1-83 (117)
18 PRK14967 putative methyltransf 99.7 3.8E-15 8.1E-20 116.7 14.4 93 34-126 22-114 (223)
19 TIGR01177 conserved hypothetic 99.6 4.7E-15 1E-19 122.6 14.4 92 30-126 168-261 (329)
20 PRK05031 tRNA (uracil-5-)-meth 99.6 4E-15 8.7E-20 124.3 13.8 123 26-155 185-325 (362)
21 PRK14966 unknown domain/N5-glu 99.6 3.7E-15 8E-20 124.7 13.2 133 48-185 251-389 (423)
22 PF05958 tRNA_U5-meth_tr: tRNA 99.6 4.5E-15 9.7E-20 123.5 13.5 126 24-156 173-316 (352)
23 TIGR00138 gidB 16S rRNA methyl 99.6 1.6E-14 3.5E-19 109.5 15.4 140 17-162 11-154 (181)
24 TIGR02143 trmA_only tRNA (urac 99.6 6.5E-15 1.4E-19 122.6 13.3 124 26-156 176-317 (353)
25 TIGR03533 L3_gln_methyl protei 99.6 1.5E-14 3.4E-19 117.0 14.6 127 48-181 121-255 (284)
26 PF01170 UPF0020: Putative RNA 99.6 7.2E-15 1.6E-19 111.2 11.8 94 29-126 13-119 (179)
27 COG2226 UbiE Methylase involve 99.6 1.4E-14 2.9E-19 113.3 13.4 94 48-143 51-147 (238)
28 PRK11805 N5-glutamine S-adenos 99.6 3E-14 6.5E-19 116.5 14.8 127 50-181 135-267 (307)
29 PRK15001 SAM-dependent 23S rib 99.6 1.8E-14 4E-19 120.1 13.6 91 33-126 216-311 (378)
30 TIGR00536 hemK_fam HemK family 99.6 2.7E-14 5.9E-19 115.8 14.1 128 50-182 116-249 (284)
31 COG2813 RsmC 16S RNA G1207 met 99.6 2.3E-14 5E-19 114.3 13.3 81 45-126 155-237 (300)
32 TIGR00479 rumA 23S rRNA (uraci 99.6 7.4E-14 1.6E-18 119.5 17.4 128 26-158 270-404 (431)
33 PRK00107 gidB 16S rRNA methylt 99.6 2.6E-13 5.6E-18 103.2 17.7 126 48-183 45-174 (187)
34 PF12847 Methyltransf_18: Meth 99.6 3.6E-14 7.9E-19 99.0 11.4 74 48-121 1-78 (112)
35 PF01209 Ubie_methyltran: ubiE 99.6 2.9E-14 6.3E-19 112.1 11.6 96 46-143 45-144 (233)
36 PHA03411 putative methyltransf 99.6 2.7E-14 5.8E-19 113.3 10.7 94 23-126 45-139 (279)
37 COG2264 PrmA Ribosomal protein 99.6 1.2E-13 2.6E-18 110.8 13.7 95 26-121 141-237 (300)
38 PRK01544 bifunctional N5-gluta 99.5 5.8E-14 1.3E-18 121.9 12.3 129 48-183 138-275 (506)
39 TIGR00477 tehB tellurite resis 99.5 1.1E-13 2.3E-18 106.3 12.4 96 47-143 29-124 (195)
40 PRK09489 rsmC 16S ribosomal RN 99.5 2.8E-13 6E-18 112.2 15.4 78 48-126 196-274 (342)
41 TIGR03534 RF_mod_PrmC protein- 99.5 5.3E-14 1.1E-18 111.9 10.7 79 48-126 87-167 (251)
42 COG1041 Predicted DNA modifica 99.5 1E-13 2.2E-18 112.6 12.2 117 29-150 182-308 (347)
43 PRK15068 tRNA mo(5)U34 methylt 99.5 3.5E-13 7.5E-18 111.0 15.4 139 3-143 76-217 (322)
44 PRK15128 23S rRNA m(5)C1962 me 99.5 6.3E-13 1.4E-17 112.0 17.1 80 48-127 220-307 (396)
45 smart00650 rADc Ribosomal RNA 99.5 8E-14 1.7E-18 104.6 10.3 79 45-125 10-89 (169)
46 PRK11207 tellurite resistance 99.5 2E-13 4.4E-18 104.9 12.7 96 47-143 29-125 (197)
47 PF13847 Methyltransf_31: Meth 99.5 2.7E-13 5.9E-18 100.0 12.8 94 48-143 3-101 (152)
48 COG0116 Predicted N6-adenine-s 99.5 1.6E-13 3.5E-18 112.9 12.2 94 29-126 176-312 (381)
49 TIGR03704 PrmC_rel_meth putati 99.5 7E-13 1.5E-17 105.5 15.1 76 49-126 87-166 (251)
50 KOG3191 Predicted N6-DNA-methy 99.5 1.9E-12 4.2E-17 95.4 15.8 83 45-127 40-124 (209)
51 PF06325 PrmA: Ribosomal prote 99.5 1.1E-13 2.4E-18 111.8 10.2 96 25-122 139-234 (295)
52 PRK09328 N5-glutamine S-adenos 99.5 6.9E-13 1.5E-17 107.0 13.5 131 46-181 106-242 (275)
53 PRK00274 ksgA 16S ribosomal RN 99.5 3.1E-13 6.8E-18 108.9 11.4 113 5-126 4-118 (272)
54 PRK11783 rlmL 23S rRNA m(2)G24 99.5 9.3E-13 2E-17 118.6 14.4 79 48-126 538-621 (702)
55 PRK14103 trans-aconitate 2-met 99.5 5.1E-13 1.1E-17 106.7 10.9 111 25-143 6-117 (255)
56 PRK14896 ksgA 16S ribosomal RN 99.5 6.8E-13 1.5E-17 106.2 11.4 97 23-126 8-104 (258)
57 TIGR00080 pimt protein-L-isoas 99.5 6E-12 1.3E-16 98.1 16.4 79 45-123 74-156 (215)
58 COG2230 Cfa Cyclopropane fatty 99.5 2E-12 4.4E-17 103.0 13.7 111 31-143 55-167 (283)
59 PRK14968 putative methyltransf 99.5 9.2E-12 2E-16 94.7 16.7 79 47-126 22-103 (188)
60 PLN02672 methionine S-methyltr 99.5 7.7E-13 1.7E-17 122.0 12.5 154 48-203 118-305 (1082)
61 PRK08287 cobalt-precorrin-6Y C 99.5 1.8E-11 3.9E-16 93.3 18.0 91 47-143 30-122 (187)
62 PF03848 TehB: Tellurite resis 99.4 2.9E-12 6.4E-17 97.2 13.4 95 47-142 29-123 (192)
63 COG2227 UbiG 2-polyprenyl-3-me 99.4 6.5E-13 1.4E-17 102.6 9.7 94 47-143 58-152 (243)
64 PLN02244 tocopherol O-methyltr 99.4 4.8E-12 1.1E-16 105.1 15.7 108 34-143 99-214 (340)
65 PRK12335 tellurite resistance 99.4 1.6E-12 3.4E-17 105.7 12.3 95 48-143 120-214 (287)
66 PTZ00338 dimethyladenosine tra 99.4 1.2E-12 2.6E-17 106.2 11.3 101 20-126 11-114 (294)
67 PRK10258 biotin biosynthesis p 99.4 1.7E-12 3.8E-17 103.4 11.9 105 32-143 26-131 (251)
68 TIGR02752 MenG_heptapren 2-hep 99.4 4.8E-12 1E-16 99.6 14.1 97 45-143 42-142 (231)
69 PF13649 Methyltransf_25: Meth 99.4 3.6E-13 7.8E-18 92.5 6.7 91 52-142 1-97 (101)
70 PF09445 Methyltransf_15: RNA 99.4 6.4E-12 1.4E-16 92.8 13.6 112 50-162 1-132 (163)
71 PRK13942 protein-L-isoaspartat 99.4 1.3E-11 2.8E-16 96.0 15.8 91 28-122 60-154 (212)
72 PF08241 Methyltransf_11: Meth 99.4 2.7E-12 5.9E-17 86.4 10.5 86 53-142 1-87 (95)
73 TIGR03587 Pse_Me-ase pseudamin 99.4 3.5E-12 7.6E-17 98.5 12.4 96 48-147 43-139 (204)
74 PLN02396 hexaprenyldihydroxybe 99.4 2.4E-12 5.3E-17 105.6 12.1 94 47-143 130-226 (322)
75 PLN02585 magnesium protoporphy 99.4 1.6E-11 3.4E-16 100.5 16.5 106 47-155 143-254 (315)
76 TIGR00406 prmA ribosomal prote 99.4 9E-12 2E-16 101.2 15.0 95 26-122 138-234 (288)
77 PRK11727 23S rRNA mA1618 methy 99.4 1.7E-12 3.7E-17 106.0 10.6 81 48-128 114-204 (321)
78 COG2242 CobL Precorrin-6B meth 99.4 2.1E-11 4.5E-16 91.1 15.1 122 28-159 18-142 (187)
79 TIGR02021 BchM-ChlM magnesium 99.4 1.1E-11 2.3E-16 96.9 14.4 106 47-155 54-161 (219)
80 PRK01683 trans-aconitate 2-met 99.4 3.9E-12 8.5E-17 101.7 11.9 96 42-143 25-121 (258)
81 PRK00517 prmA ribosomal protei 99.4 1.6E-11 3.5E-16 97.8 15.0 105 26-143 98-204 (250)
82 PRK11036 putative S-adenosyl-L 99.4 6E-12 1.3E-16 100.6 11.8 94 47-143 43-140 (255)
83 PRK13944 protein-L-isoaspartat 99.4 3.1E-11 6.8E-16 93.4 15.4 80 45-124 69-153 (205)
84 KOG2904 Predicted methyltransf 99.4 5.5E-12 1.2E-16 98.7 11.1 98 30-128 131-237 (328)
85 PRK00121 trmB tRNA (guanine-N( 99.4 1.2E-11 2.5E-16 95.5 12.7 96 48-143 40-147 (202)
86 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.2E-11 2.7E-16 98.3 13.0 95 48-143 56-155 (247)
87 PRK00312 pcm protein-L-isoaspa 99.4 6.3E-11 1.4E-15 92.1 16.7 78 45-123 75-154 (212)
88 COG1092 Predicted SAM-dependen 99.4 2.6E-11 5.7E-16 101.3 15.2 80 48-127 217-304 (393)
89 TIGR00755 ksgA dimethyladenosi 99.4 1.8E-11 3.8E-16 97.8 13.6 98 21-125 5-106 (253)
90 KOG2187 tRNA uracil-5-methyltr 99.4 5.6E-12 1.2E-16 106.4 10.6 124 26-155 361-495 (534)
91 PTZ00098 phosphoethanolamine N 99.4 1.7E-11 3.6E-16 98.4 12.6 102 41-143 45-147 (263)
92 PF02353 CMAS: Mycolic acid cy 99.3 2E-11 4.2E-16 98.2 12.6 111 31-143 45-157 (273)
93 PRK11783 rlmL 23S rRNA m(2)G24 99.3 5.8E-12 1.3E-16 113.5 10.3 97 27-126 172-316 (702)
94 TIGR02469 CbiT precorrin-6Y C5 99.3 9.1E-11 2E-15 83.0 14.1 76 47-122 18-97 (124)
95 PLN02233 ubiquinone biosynthes 99.3 3.9E-11 8.4E-16 96.2 13.6 95 47-143 72-173 (261)
96 COG2518 Pcm Protein-L-isoaspar 99.3 4.7E-11 1E-15 91.0 13.0 95 23-122 51-147 (209)
97 TIGR00740 methyltransferase, p 99.3 6E-11 1.3E-15 93.9 14.3 95 48-143 53-152 (239)
98 COG0030 KsgA Dimethyladenosine 99.3 1.9E-11 4E-16 96.5 11.0 99 22-126 8-108 (259)
99 PRK00377 cbiT cobalt-precorrin 99.3 9.3E-11 2E-15 90.2 14.6 94 45-143 37-136 (198)
100 PRK10901 16S rRNA methyltransf 99.3 3.9E-11 8.5E-16 102.6 13.7 81 45-125 241-325 (427)
101 PF02475 Met_10: Met-10+ like- 99.3 1.5E-11 3.2E-16 94.2 9.9 91 47-143 100-193 (200)
102 PF02384 N6_Mtase: N-6 DNA Met 99.3 1E-11 2.2E-16 102.0 9.6 103 20-126 22-138 (311)
103 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.1E-11 4.5E-16 97.9 11.2 82 45-126 68-153 (264)
104 PRK04338 N(2),N(2)-dimethylgua 99.3 2.2E-11 4.8E-16 102.2 11.7 95 49-149 58-157 (382)
105 PF08003 Methyltransf_9: Prote 99.3 7.5E-11 1.6E-15 94.4 14.1 141 3-143 69-213 (315)
106 PRK07580 Mg-protoporphyrin IX 99.3 1.1E-10 2.3E-15 91.7 14.4 106 46-154 61-168 (230)
107 KOG1271 Methyltransferases [Ge 99.3 3E-10 6.4E-15 84.1 15.3 180 12-200 28-224 (227)
108 PRK14904 16S rRNA methyltransf 99.3 7.3E-11 1.6E-15 101.4 13.7 81 45-125 247-330 (445)
109 TIGR00091 tRNA (guanine-N(7)-) 99.3 8.7E-11 1.9E-15 90.1 12.5 96 48-143 16-123 (194)
110 PRK06202 hypothetical protein; 99.3 2.1E-11 4.5E-16 96.1 9.2 99 47-147 59-163 (232)
111 PRK11705 cyclopropane fatty ac 99.3 1.1E-10 2.4E-15 98.3 13.7 104 36-143 155-258 (383)
112 PLN02336 phosphoethanolamine N 99.3 2.5E-10 5.3E-15 99.1 15.6 95 47-143 265-360 (475)
113 PRK05785 hypothetical protein; 99.3 1.4E-10 3E-15 91.1 12.7 88 48-144 51-139 (226)
114 PRK14903 16S rRNA methyltransf 99.3 1.2E-10 2.7E-15 99.4 13.4 82 45-126 234-320 (431)
115 KOG1540 Ubiquinone biosynthesi 99.3 2.5E-10 5.5E-15 88.7 13.7 105 44-150 96-213 (296)
116 PRK14902 16S rRNA methyltransf 99.3 1.1E-10 2.4E-15 100.3 13.2 80 46-125 248-332 (444)
117 PRK11873 arsM arsenite S-adeno 99.3 1.8E-10 3.8E-15 92.9 13.3 95 47-143 76-174 (272)
118 COG2519 GCD14 tRNA(1-methylade 99.2 8.4E-10 1.8E-14 86.1 16.4 111 45-162 91-205 (256)
119 KOG1500 Protein arginine N-met 99.2 2.7E-11 5.8E-16 97.5 8.3 77 45-122 174-252 (517)
120 TIGR02072 BioC biotin biosynth 99.2 9.5E-11 2.1E-15 92.2 11.5 92 47-143 33-126 (240)
121 PF01135 PCMT: Protein-L-isoas 99.2 9.9E-11 2.1E-15 90.5 11.2 94 25-122 53-150 (209)
122 PF05401 NodS: Nodulation prot 99.2 2E-10 4.2E-15 86.6 12.2 95 47-143 42-137 (201)
123 TIGR03840 TMPT_Se_Te thiopurin 99.2 9.6E-11 2.1E-15 91.0 10.8 95 48-143 34-143 (213)
124 PF10672 Methyltrans_SAM: S-ad 99.2 9.4E-12 2E-16 100.1 5.2 79 48-126 123-208 (286)
125 PRK07402 precorrin-6B methylas 99.2 4.7E-10 1E-14 86.2 14.4 91 47-143 39-133 (196)
126 PLN02490 MPBQ/MSBQ methyltrans 99.2 2.3E-10 5E-15 94.4 13.5 92 48-143 113-206 (340)
127 TIGR02987 met_A_Alw26 type II 99.2 4.5E-11 9.7E-16 104.8 9.8 104 23-126 3-125 (524)
128 PRK06922 hypothetical protein; 99.2 7.4E-11 1.6E-15 103.4 11.0 97 47-143 417-528 (677)
129 PRK14121 tRNA (guanine-N(7)-)- 99.2 3.6E-10 7.9E-15 94.3 14.6 113 47-159 121-242 (390)
130 COG4106 Tam Trans-aconitate me 99.2 3E-11 6.4E-16 91.7 7.2 106 45-156 27-134 (257)
131 PRK13943 protein-L-isoaspartat 99.2 1.3E-09 2.9E-14 89.4 17.2 77 45-121 77-157 (322)
132 PRK14901 16S rRNA methyltransf 99.2 3E-10 6.4E-15 97.4 13.7 81 45-125 249-337 (434)
133 TIGR00308 TRM1 tRNA(guanine-26 99.2 1E-10 2.2E-15 97.9 10.3 94 50-149 46-146 (374)
134 COG2520 Predicted methyltransf 99.2 1.7E-10 3.6E-15 94.6 11.2 90 48-143 188-280 (341)
135 PRK04266 fibrillarin; Provisio 99.2 6.5E-10 1.4E-14 87.1 14.0 91 30-122 55-150 (226)
136 smart00828 PKS_MT Methyltransf 99.2 2.5E-10 5.4E-15 89.4 11.0 92 50-143 1-95 (224)
137 PLN02781 Probable caffeoyl-CoA 99.2 7.8E-10 1.7E-14 87.2 13.4 102 34-143 57-169 (234)
138 TIGR00563 rsmB ribosomal RNA s 99.2 8.1E-10 1.7E-14 94.5 14.1 82 45-126 235-322 (426)
139 KOG0820 Ribosomal RNA adenine 99.2 2.4E-10 5.2E-15 89.5 9.4 99 22-126 35-136 (315)
140 PLN02336 phosphoethanolamine N 99.2 3.2E-10 6.9E-15 98.4 11.2 95 47-143 36-133 (475)
141 PF08704 GCD14: tRNA methyltra 99.2 2.1E-09 4.5E-14 84.9 14.6 116 45-167 37-160 (247)
142 PLN03075 nicotianamine synthas 99.2 1.8E-09 3.9E-14 87.1 14.5 102 48-150 123-231 (296)
143 PRK08317 hypothetical protein; 99.1 2.1E-09 4.4E-14 84.5 14.5 97 45-143 16-115 (241)
144 PRK13255 thiopurine S-methyltr 99.1 3.7E-10 8E-15 88.1 10.0 95 48-143 37-146 (218)
145 KOG1270 Methyltransferases [Co 99.1 8.1E-11 1.8E-15 91.8 6.1 75 49-126 90-171 (282)
146 PRK00811 spermidine synthase; 99.1 9.5E-10 2.1E-14 89.1 12.3 102 48-149 76-189 (283)
147 PRK00216 ubiE ubiquinone/menaq 99.1 1.5E-09 3.3E-14 85.4 13.3 95 47-143 50-149 (239)
148 TIGR02081 metW methionine bios 99.1 4.7E-10 1E-14 86.0 10.0 90 48-145 13-105 (194)
149 PF07021 MetW: Methionine bios 99.1 2.9E-10 6.2E-15 85.5 8.5 93 48-148 13-108 (193)
150 PRK05134 bifunctional 3-demeth 99.1 1.9E-09 4.1E-14 84.9 13.0 94 46-142 46-141 (233)
151 COG3897 Predicted methyltransf 99.1 3.3E-10 7.1E-15 84.7 7.6 141 45-202 76-217 (218)
152 smart00138 MeTrc Methyltransfe 99.1 1E-09 2.2E-14 88.1 11.0 79 48-126 99-216 (264)
153 cd02440 AdoMet_MTases S-adenos 99.1 1.5E-09 3.2E-14 73.3 10.2 75 51-125 1-78 (107)
154 KOG1499 Protein arginine N-met 99.1 2.3E-10 5.1E-15 92.8 7.2 73 47-120 59-134 (346)
155 PF08242 Methyltransf_12: Meth 99.1 3.7E-11 8E-16 82.0 2.1 87 53-141 1-92 (99)
156 PRK10742 putative methyltransf 99.1 2.3E-09 5E-14 84.0 11.9 83 47-130 85-181 (250)
157 PRK04148 hypothetical protein; 99.1 4.2E-09 9E-14 75.2 12.2 70 46-122 14-87 (134)
158 PRK04457 spermidine synthase; 99.1 1.7E-09 3.6E-14 86.7 11.3 100 48-148 66-174 (262)
159 PLN02476 O-methyltransferase 99.1 3.8E-09 8.2E-14 84.7 13.2 109 32-148 105-225 (278)
160 PRK11088 rrmA 23S rRNA methylt 99.1 2.3E-09 5E-14 86.5 12.0 69 48-120 85-158 (272)
161 PRK11188 rrmJ 23S rRNA methylt 99.1 4.1E-09 8.9E-14 81.7 12.4 66 47-122 50-126 (209)
162 PF00398 RrnaAD: Ribosomal RNA 99.1 8.5E-10 1.8E-14 88.5 8.8 100 19-124 4-108 (262)
163 KOG2730 Methylase [General fun 99.1 6.3E-10 1.4E-14 84.6 7.4 100 23-126 72-178 (263)
164 PTZ00146 fibrillarin; Provisio 99.0 8E-09 1.7E-13 83.1 13.5 90 31-122 116-211 (293)
165 TIGR03438 probable methyltrans 99.0 8.9E-09 1.9E-13 84.2 13.6 96 48-143 63-168 (301)
166 PF01596 Methyltransf_3: O-met 99.0 6.7E-09 1.5E-13 80.1 11.9 112 32-151 32-155 (205)
167 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2E-08 4.4E-13 78.2 14.1 94 47-143 38-134 (223)
168 PF05185 PRMT5: PRMT5 arginine 99.0 1.1E-09 2.4E-14 93.7 7.4 74 49-122 187-267 (448)
169 TIGR02716 C20_methyl_CrtF C-20 99.0 1.2E-08 2.6E-13 83.7 13.3 95 47-143 148-245 (306)
170 PF05971 Methyltransf_10: Prot 99.0 2.7E-09 6E-14 86.0 8.7 81 49-129 103-193 (299)
171 TIGR00417 speE spermidine synt 99.0 1.7E-08 3.8E-13 81.3 13.5 102 48-149 72-184 (270)
172 TIGR01983 UbiG ubiquinone bios 99.0 2.1E-08 4.4E-13 78.4 13.3 94 47-143 44-140 (224)
173 PRK13256 thiopurine S-methyltr 99.0 3.6E-09 7.9E-14 82.5 8.6 103 39-142 34-153 (226)
174 KOG2671 Putative RNA methylase 98.9 7.4E-10 1.6E-14 89.4 4.4 102 24-126 184-297 (421)
175 PF10294 Methyltransf_16: Puta 98.9 3.3E-09 7.3E-14 79.8 7.6 78 46-124 43-131 (173)
176 PRK03612 spermidine synthase; 98.9 2.4E-08 5.3E-13 87.4 14.0 102 48-149 297-413 (521)
177 COG4122 Predicted O-methyltran 98.9 3.6E-08 7.8E-13 76.3 12.9 112 31-150 45-165 (219)
178 PF13489 Methyltransf_23: Meth 98.9 1.6E-08 3.5E-13 74.6 10.2 85 47-143 21-106 (161)
179 PF01861 DUF43: Protein of unk 98.9 2.4E-07 5.2E-12 72.2 16.4 141 4-153 4-152 (243)
180 PRK00050 16S rRNA m(4)C1402 me 98.9 1E-08 2.2E-13 83.1 8.1 88 38-126 9-103 (296)
181 PF05724 TPMT: Thiopurine S-me 98.9 5.4E-08 1.2E-12 75.8 11.7 98 45-143 34-146 (218)
182 PRK01581 speE spermidine synth 98.8 6.5E-08 1.4E-12 80.0 12.4 105 47-151 149-268 (374)
183 PLN02366 spermidine synthase 98.8 1.2E-07 2.5E-12 77.7 13.9 102 48-149 91-204 (308)
184 KOG4300 Predicted methyltransf 98.8 9.2E-08 2E-12 72.4 11.9 92 50-143 78-173 (252)
185 COG2521 Predicted archaeal met 98.8 7.1E-09 1.5E-13 79.7 5.6 108 46-153 132-248 (287)
186 TIGR00438 rrmJ cell division p 98.8 1.5E-07 3.2E-12 71.8 12.9 66 47-122 31-107 (188)
187 PLN02589 caffeoyl-CoA O-methyl 98.8 9.8E-08 2.1E-12 75.6 11.9 109 32-148 66-187 (247)
188 COG4076 Predicted RNA methylas 98.8 9.6E-09 2.1E-13 76.5 5.1 72 48-121 32-104 (252)
189 PRK11933 yebU rRNA (cytosine-C 98.8 2.2E-07 4.8E-12 80.0 13.3 82 45-126 110-196 (470)
190 PF02527 GidB: rRNA small subu 98.7 5.3E-07 1.1E-11 68.4 13.8 171 4-182 3-179 (184)
191 PF02390 Methyltransf_4: Putat 98.7 3.9E-07 8.4E-12 69.9 13.0 112 51-162 20-143 (195)
192 COG3963 Phospholipid N-methylt 98.7 1E-07 2.2E-12 69.8 9.0 120 14-141 17-145 (194)
193 TIGR00478 tly hemolysin TlyA f 98.7 2.3E-07 5E-12 72.6 11.0 51 36-86 62-113 (228)
194 COG0357 GidB Predicted S-adeno 98.7 8.8E-07 1.9E-11 68.4 12.9 172 4-184 22-201 (215)
195 KOG3010 Methyltransferase [Gen 98.6 1.5E-07 3.3E-12 72.9 8.0 88 51-142 36-126 (261)
196 KOG2899 Predicted methyltransf 98.6 6.7E-07 1.5E-11 69.4 10.7 117 45-162 55-219 (288)
197 PLN02823 spermine synthase 98.6 2.2E-06 4.7E-11 71.0 14.3 101 48-149 103-218 (336)
198 KOG1541 Predicted protein carb 98.6 2.9E-07 6.2E-12 70.4 7.4 90 32-126 32-125 (270)
199 KOG2915 tRNA(1-methyladenosine 98.5 6.7E-06 1.4E-10 64.9 14.7 112 45-162 102-220 (314)
200 KOG1975 mRNA cap methyltransfe 98.5 2E-06 4.2E-11 69.4 11.9 114 48-162 117-247 (389)
201 PF08123 DOT1: Histone methyla 98.5 4.6E-06 9.9E-11 64.4 13.5 109 40-151 34-158 (205)
202 COG0220 Predicted S-adenosylme 98.5 2.8E-06 6E-11 66.5 12.3 111 50-160 50-172 (227)
203 COG0286 HsdM Type I restrictio 98.5 5.3E-07 1.1E-11 78.4 8.7 100 21-124 163-275 (489)
204 PF11599 AviRa: RRNA methyltra 98.5 2.3E-06 5E-11 65.3 10.8 100 29-128 32-183 (246)
205 PF03291 Pox_MCEL: mRNA cappin 98.5 8E-07 1.7E-11 73.4 8.5 108 48-155 62-190 (331)
206 COG0144 Sun tRNA and rRNA cyto 98.4 2.2E-06 4.8E-11 71.6 10.6 83 44-126 152-242 (355)
207 COG3129 Predicted SAM-dependen 98.4 9.2E-07 2E-11 68.1 6.6 79 48-126 78-166 (292)
208 PF04816 DUF633: Family of unk 98.4 3.6E-06 7.8E-11 64.9 9.7 68 52-119 1-72 (205)
209 PF01564 Spermine_synth: Sperm 98.4 1.3E-05 2.7E-10 63.8 12.7 135 48-183 76-224 (246)
210 PF05891 Methyltransf_PK: AdoM 98.3 2.5E-06 5.4E-11 65.6 7.9 103 48-150 55-159 (218)
211 COG1867 TRM1 N2,N2-dimethylgua 98.3 4.4E-06 9.6E-11 68.7 9.2 91 48-144 52-146 (380)
212 COG1568 Predicted methyltransf 98.3 1.1E-06 2.3E-11 69.4 5.3 151 6-162 111-272 (354)
213 KOG2361 Predicted methyltransf 98.3 3.4E-06 7.3E-11 65.5 7.8 102 51-152 74-183 (264)
214 COG0421 SpeE Spermidine syntha 98.3 1.2E-05 2.7E-10 64.9 11.3 102 49-150 77-189 (282)
215 TIGR00006 S-adenosyl-methyltra 98.3 3.9E-06 8.6E-11 68.3 8.4 85 41-125 13-104 (305)
216 PF04445 SAM_MT: Putative SAM- 98.3 3E-06 6.4E-11 66.2 7.4 80 50-130 77-168 (234)
217 PRK00536 speE spermidine synth 98.3 6.7E-05 1.4E-09 60.0 14.8 95 47-151 71-171 (262)
218 PF13679 Methyltransf_32: Meth 98.3 1.1E-05 2.5E-10 58.5 9.7 74 46-119 23-105 (141)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 1.2E-05 2.7E-10 65.2 10.8 82 45-126 82-169 (283)
220 PF00891 Methyltransf_2: O-met 98.3 2E-05 4.3E-10 62.4 11.8 91 45-143 97-188 (241)
221 TIGR01444 fkbM_fam methyltrans 98.2 5E-06 1.1E-10 60.2 7.2 59 51-109 1-61 (143)
222 PF02005 TRM: N2,N2-dimethylgu 98.2 9.7E-06 2.1E-10 68.2 9.7 93 49-147 50-149 (377)
223 PF05219 DREV: DREV methyltran 98.2 2.5E-05 5.5E-10 61.6 10.9 64 48-120 94-158 (265)
224 cd00315 Cyt_C5_DNA_methylase C 98.2 4.8E-06 1E-10 67.3 6.8 71 51-126 2-75 (275)
225 KOG1661 Protein-L-isoaspartate 98.2 1.6E-05 3.5E-10 60.6 9.0 74 47-120 81-169 (237)
226 PF09243 Rsm22: Mitochondrial 98.2 4.9E-05 1.1E-09 61.4 12.4 146 30-176 15-166 (274)
227 PRK11760 putative 23S rRNA C24 98.2 2.4E-05 5.2E-10 64.3 10.5 90 26-122 181-279 (357)
228 PHA01634 hypothetical protein 98.1 2.2E-05 4.7E-10 55.1 7.7 74 46-121 26-100 (156)
229 PF01739 CheR: CheR methyltran 98.1 3.2E-05 7E-10 59.3 9.4 92 48-139 31-162 (196)
230 PRK01544 bifunctional N5-gluta 98.1 8.4E-05 1.8E-09 65.1 13.1 115 48-162 347-472 (506)
231 COG4976 Predicted methyltransf 98.1 2.9E-06 6.3E-11 65.4 3.5 70 48-122 125-197 (287)
232 COG4262 Predicted spermidine s 98.1 3E-05 6.5E-10 63.8 9.3 74 49-122 290-374 (508)
233 KOG1663 O-methyltransferase [S 98.1 8.1E-05 1.7E-09 57.6 10.8 97 47-148 72-180 (237)
234 COG1352 CheR Methylase of chem 97.9 0.00071 1.5E-08 54.3 14.3 111 48-183 96-247 (268)
235 KOG1122 tRNA and rRNA cytosine 97.9 0.00029 6.2E-09 59.1 11.7 81 45-125 238-324 (460)
236 PRK10611 chemotaxis methyltran 97.9 7.6E-05 1.7E-09 60.5 8.1 105 49-178 116-263 (287)
237 PF06080 DUF938: Protein of un 97.8 0.0002 4.4E-09 54.8 9.5 105 48-152 25-142 (204)
238 PF00145 DNA_methylase: C-5 cy 97.8 3.7E-05 8.1E-10 63.3 5.9 70 51-126 2-74 (335)
239 PLN02232 ubiquinone biosynthes 97.8 8.5E-05 1.8E-09 55.1 7.3 67 75-143 1-72 (160)
240 COG2384 Predicted SAM-dependen 97.8 0.00058 1.3E-08 52.6 11.1 107 48-158 16-126 (226)
241 PRK11524 putative methyltransf 97.8 0.00011 2.3E-09 59.8 7.6 58 34-93 195-252 (284)
242 PF01555 N6_N4_Mtase: DNA meth 97.8 9.6E-05 2.1E-09 57.5 7.1 55 29-89 177-231 (231)
243 PF12147 Methyltransf_20: Puta 97.7 0.00092 2E-08 53.7 12.2 97 47-143 134-240 (311)
244 PF01728 FtsJ: FtsJ-like methy 97.7 0.00018 4E-09 54.3 7.8 67 48-124 23-102 (181)
245 PRK13699 putative methylase; P 97.7 0.00023 5E-09 55.9 7.9 46 48-94 163-208 (227)
246 PF01795 Methyltransf_5: MraW 97.6 0.00011 2.3E-09 60.0 5.6 86 40-125 12-105 (310)
247 PRK10458 DNA cytosine methylas 97.6 0.00044 9.5E-09 59.8 9.5 77 49-126 88-182 (467)
248 PF01269 Fibrillarin: Fibrilla 97.6 0.002 4.4E-08 49.9 12.0 90 31-122 57-152 (229)
249 TIGR00675 dcm DNA-methyltransf 97.6 0.00011 2.4E-09 60.6 5.4 70 52-126 1-72 (315)
250 COG0275 Predicted S-adenosylme 97.6 0.00043 9.3E-09 55.8 8.4 87 36-122 11-105 (314)
251 KOG2793 Putative N2,N2-dimethy 97.6 0.003 6.5E-08 50.0 13.0 92 48-140 86-190 (248)
252 PF07091 FmrO: Ribosomal RNA m 97.6 0.00041 8.8E-09 54.6 8.0 72 48-119 105-177 (251)
253 COG0270 Dcm Site-specific DNA 97.6 0.00022 4.7E-09 59.2 6.7 74 49-126 3-80 (328)
254 COG1189 Predicted rRNA methyla 97.6 0.00016 3.6E-09 56.3 5.4 86 37-125 67-156 (245)
255 KOG4058 Uncharacterized conser 97.5 0.00028 6.2E-09 50.9 5.9 74 45-118 69-145 (199)
256 KOG1227 Putative methyltransfe 97.5 4.5E-05 9.8E-10 61.1 2.0 73 48-120 194-269 (351)
257 TIGR00497 hsdM type I restrict 97.5 0.00059 1.3E-08 59.8 8.9 101 23-125 194-305 (501)
258 KOG2940 Predicted methyltransf 97.4 0.00011 2.5E-09 56.8 3.0 77 49-126 73-150 (325)
259 COG1889 NOP1 Fibrillarin-like 97.4 0.0033 7.1E-08 48.0 10.6 99 23-122 51-154 (231)
260 KOG3201 Uncharacterized conser 97.4 0.00015 3.3E-09 53.1 3.4 133 26-162 11-154 (201)
261 KOG1501 Arginine N-methyltrans 97.3 0.00042 9E-09 58.5 5.2 68 51-118 69-140 (636)
262 COG0293 FtsJ 23S rRNA methylas 97.3 0.0042 9E-08 47.7 9.8 82 31-122 27-120 (205)
263 PF06962 rRNA_methylase: Putat 97.2 0.0018 3.9E-08 46.7 7.1 71 73-143 1-83 (140)
264 KOG2912 Predicted DNA methylas 97.2 0.00044 9.6E-09 56.0 4.0 75 52-126 106-191 (419)
265 COG0500 SmtA SAM-dependent met 97.0 0.017 3.7E-07 41.0 11.1 87 52-142 52-145 (257)
266 KOG2078 tRNA modification enzy 97.0 0.0004 8.6E-09 58.3 2.4 62 47-109 248-312 (495)
267 KOG2198 tRNA cytosine-5-methyl 96.9 0.016 3.5E-07 48.1 11.0 139 45-185 152-332 (375)
268 TIGR03439 methyl_EasF probable 96.9 0.05 1.1E-06 44.9 13.8 93 48-140 76-184 (319)
269 PF05148 Methyltransf_8: Hypot 96.9 0.0069 1.5E-07 46.6 7.7 77 48-143 72-149 (219)
270 PF07942 N2227: N2227-like pro 96.8 0.015 3.2E-07 46.8 9.9 98 48-148 56-199 (270)
271 KOG1253 tRNA methyltransferase 96.8 0.00082 1.8E-08 57.5 2.4 90 48-143 109-207 (525)
272 KOG0822 Protein kinase inhibit 96.8 0.0019 4E-08 55.8 4.4 103 15-120 337-446 (649)
273 COG2961 ComJ Protein involved 96.7 0.03 6.6E-07 44.1 10.0 116 53-171 93-215 (279)
274 KOG1269 SAM-dependent methyltr 96.5 0.011 2.5E-07 49.5 7.1 95 47-143 109-206 (364)
275 PF04378 RsmJ: Ribosomal RNA s 96.3 0.011 2.5E-07 46.7 5.6 99 53-153 62-166 (245)
276 KOG1709 Guanidinoacetate methy 96.3 0.077 1.7E-06 41.1 9.9 106 47-154 100-209 (271)
277 KOG3178 Hydroxyindole-O-methyl 96.2 0.031 6.7E-07 46.2 8.0 88 50-143 179-266 (342)
278 KOG3987 Uncharacterized conser 96.2 0.0023 4.9E-08 49.0 1.3 43 47-90 111-153 (288)
279 PF07757 AdoMet_MTase: Predict 96.0 0.015 3.2E-07 39.8 4.5 48 32-80 42-89 (112)
280 PF04989 CmcI: Cephalosporin h 96.0 0.12 2.7E-06 39.7 10.1 117 36-160 23-155 (206)
281 PF03059 NAS: Nicotianamine sy 95.9 0.04 8.6E-07 44.5 7.3 94 48-142 120-220 (276)
282 PF13578 Methyltransf_24: Meth 95.7 0.0033 7.2E-08 43.0 0.5 69 53-122 1-78 (106)
283 KOG3115 Methyltransferase-like 95.7 0.042 9E-07 42.1 6.3 64 48-111 60-132 (249)
284 PF03141 Methyltransf_29: Puta 95.7 0.024 5.1E-07 49.0 5.4 63 50-119 119-187 (506)
285 KOG3045 Predicted RNA methylas 95.6 0.11 2.3E-06 41.4 8.4 81 48-149 180-263 (325)
286 PF10237 N6-adenineMlase: Prob 95.6 0.41 8.8E-06 35.6 11.2 91 23-124 2-97 (162)
287 COG5459 Predicted rRNA methyla 95.6 0.076 1.6E-06 44.1 7.8 120 35-154 100-228 (484)
288 KOG0821 Predicted ribosomal RN 95.5 0.056 1.2E-06 42.0 6.4 100 38-138 40-153 (326)
289 KOG2352 Predicted spermine/spe 95.2 0.45 9.8E-06 41.2 11.4 76 51-126 51-127 (482)
290 PF03686 UPF0146: Uncharacteri 95.0 0.11 2.3E-06 36.7 6.1 80 48-143 13-96 (127)
291 COG0863 DNA modification methy 94.8 0.16 3.5E-06 41.2 7.7 57 36-94 211-267 (302)
292 KOG2798 Putative trehalase [Ca 94.8 0.16 3.5E-06 41.5 7.3 99 49-150 151-295 (369)
293 KOG2920 Predicted methyltransf 94.6 0.03 6.6E-07 44.9 2.9 38 47-84 115-152 (282)
294 PF04672 Methyltransf_19: S-ad 94.6 0.92 2E-05 36.5 11.2 118 34-151 53-189 (267)
295 KOG1562 Spermidine synthase [A 94.4 0.13 2.9E-06 41.7 6.0 108 47-154 120-238 (337)
296 KOG2651 rRNA adenine N-6-methy 94.2 0.23 4.9E-06 41.7 7.2 42 48-89 153-194 (476)
297 PF02636 Methyltransf_28: Puta 94.1 0.35 7.5E-06 38.5 8.0 45 49-93 19-72 (252)
298 KOG1331 Predicted methyltransf 94.0 0.039 8.4E-07 44.4 2.3 86 48-142 45-133 (293)
299 KOG2360 Proliferation-associat 93.9 0.18 4E-06 42.3 6.1 82 45-126 210-297 (413)
300 PF07669 Eco57I: Eco57I restri 93.9 0.11 2.3E-06 35.7 4.1 30 113-142 2-43 (106)
301 COG1565 Uncharacterized conser 93.9 0.43 9.2E-06 39.9 8.1 71 24-94 46-132 (370)
302 PRK11524 putative methyltransf 93.6 0.25 5.5E-06 40.1 6.5 29 97-125 8-39 (284)
303 PTZ00357 methyltransferase; Pr 93.6 0.2 4.4E-06 45.3 6.1 69 51-119 703-798 (1072)
304 PF11968 DUF3321: Putative met 93.5 0.24 5.1E-06 38.4 5.7 77 50-142 53-134 (219)
305 KOG1596 Fibrillarin and relate 93.4 0.28 6E-06 38.7 6.0 71 47-122 155-235 (317)
306 PF02086 MethyltransfD12: D12 93.4 0.16 3.5E-06 40.3 5.0 40 48-88 20-59 (260)
307 KOG3924 Putative protein methy 93.2 0.16 3.5E-06 42.7 4.7 89 34-122 178-281 (419)
308 COG4798 Predicted methyltransf 92.3 0.69 1.5E-05 35.4 6.6 82 45-126 45-135 (238)
309 KOG1201 Hydroxysteroid 17-beta 92.1 1 2.2E-05 36.7 7.7 78 46-125 35-126 (300)
310 COG1748 LYS9 Saccharopine dehy 91.5 3 6.6E-05 35.5 10.3 69 50-123 2-78 (389)
311 KOG0024 Sorbitol dehydrogenase 91.2 0.57 1.2E-05 38.6 5.5 45 45-89 166-212 (354)
312 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.2 0.46 1E-05 38.0 5.0 48 45-92 53-100 (256)
313 KOG4589 Cell division protein 90.6 0.47 1E-05 36.1 4.2 66 48-123 69-146 (232)
314 PF00106 adh_short: short chai 90.0 2.7 5.9E-05 30.5 8.0 76 51-126 2-93 (167)
315 PRK13699 putative methylase; P 89.0 0.22 4.8E-06 39.1 1.5 28 98-125 2-32 (227)
316 COG1743 Adenine-specific DNA m 88.2 0.72 1.6E-05 42.2 4.3 44 48-92 90-133 (875)
317 PF07279 DUF1442: Protein of u 88.0 11 0.00024 29.4 10.7 74 48-121 41-123 (218)
318 PF02254 TrkA_N: TrkA-N domain 87.5 2 4.3E-05 29.4 5.5 59 57-121 4-70 (116)
319 COG1255 Uncharacterized protei 87.5 5.1 0.00011 28.0 7.1 61 49-120 14-77 (129)
320 PRK08217 fabG 3-ketoacyl-(acyl 87.2 5.5 0.00012 30.9 8.5 74 48-123 4-92 (253)
321 PRK05867 short chain dehydroge 86.7 5.5 0.00012 31.2 8.3 77 47-124 7-97 (253)
322 KOG3350 Uncharacterized conser 86.7 12 0.00026 28.3 11.3 95 20-126 47-148 (217)
323 PF11899 DUF3419: Protein of u 86.5 4.4 9.6E-05 34.5 7.9 48 45-93 32-79 (380)
324 PRK08339 short chain dehydroge 86.0 6.9 0.00015 31.0 8.6 76 47-123 6-95 (263)
325 TIGR02356 adenyl_thiF thiazole 85.9 2.4 5.2E-05 32.6 5.6 33 48-80 20-54 (202)
326 PF05050 Methyltransf_21: Meth 85.9 2.1 4.6E-05 31.0 5.2 52 54-105 1-61 (167)
327 PRK07063 short chain dehydroge 85.8 7.4 0.00016 30.6 8.6 76 47-123 5-96 (260)
328 KOG2352 Predicted spermine/spe 85.7 0.27 5.8E-06 42.5 0.3 72 49-120 296-377 (482)
329 COG1063 Tdh Threonine dehydrog 85.4 2.3 5E-05 35.6 5.7 45 47-91 167-213 (350)
330 PRK06172 short chain dehydroge 85.4 7.5 0.00016 30.4 8.4 77 47-124 5-95 (253)
331 COG1064 AdhP Zn-dependent alco 85.3 2.3 5E-05 35.5 5.5 50 42-92 160-211 (339)
332 PRK08303 short chain dehydroge 85.3 5.4 0.00012 32.6 7.7 74 47-121 6-103 (305)
333 PRK05876 short chain dehydroge 85.2 8 0.00017 31.0 8.6 77 47-124 4-94 (275)
334 KOG0919 C-5 cytosine-specific 84.9 0.75 1.6E-05 36.4 2.3 74 49-126 3-82 (338)
335 PRK05854 short chain dehydroge 84.8 6.7 0.00014 32.1 8.1 76 47-123 12-103 (313)
336 PRK08213 gluconate 5-dehydroge 84.7 10 0.00023 29.7 9.0 75 47-123 10-99 (259)
337 PF01488 Shikimate_DH: Shikima 84.5 8.3 0.00018 27.4 7.6 76 45-124 8-86 (135)
338 COG0338 Dam Site-specific DNA 84.4 1.1 2.4E-05 36.2 3.2 30 97-126 156-187 (274)
339 PRK07035 short chain dehydroge 84.3 9.1 0.0002 29.9 8.5 76 47-123 6-95 (252)
340 PRK14851 hypothetical protein; 84.3 4.4 9.6E-05 37.2 7.3 113 1-119 1-139 (679)
341 COG3392 Adenine-specific DNA m 84.2 0.75 1.6E-05 36.8 2.1 33 46-79 25-57 (330)
342 PRK08862 short chain dehydroge 84.0 8.6 0.00019 29.9 8.1 73 48-121 4-91 (227)
343 TIGR00853 pts-lac PTS system, 83.9 3.9 8.5E-05 27.4 5.2 55 50-122 4-59 (95)
344 PRK12548 shikimate 5-dehydroge 83.8 8.1 0.00018 31.4 8.1 79 47-126 124-212 (289)
345 PRK06124 gluconate 5-dehydroge 83.8 10 0.00022 29.6 8.6 76 47-124 9-99 (256)
346 PRK05866 short chain dehydroge 83.7 9.6 0.00021 30.9 8.5 74 48-123 39-127 (293)
347 PRK07890 short chain dehydroge 83.4 11 0.00023 29.5 8.5 75 48-123 4-92 (258)
348 PRK06194 hypothetical protein; 83.3 10 0.00022 30.3 8.5 76 48-125 5-95 (287)
349 PRK07097 gluconate 5-dehydroge 83.0 11 0.00023 29.8 8.4 77 48-125 9-99 (265)
350 COG5379 BtaA S-adenosylmethion 83.0 5.9 0.00013 32.5 6.7 46 48-94 63-108 (414)
351 PRK07904 short chain dehydroge 83.0 7.7 0.00017 30.6 7.5 76 48-124 7-98 (253)
352 PRK07109 short chain dehydroge 82.9 11 0.00024 31.2 8.7 76 47-124 6-96 (334)
353 PRK06139 short chain dehydroge 82.8 9.3 0.0002 31.7 8.2 77 47-124 5-95 (330)
354 PRK07791 short chain dehydroge 82.7 23 0.0005 28.4 11.1 77 47-124 4-103 (286)
355 PRK07677 short chain dehydroge 82.6 10 0.00023 29.6 8.2 73 49-122 1-87 (252)
356 PRK07102 short chain dehydroge 82.5 9.7 0.00021 29.5 7.9 72 50-123 2-86 (243)
357 TIGR00571 dam DNA adenine meth 82.4 3.2 7E-05 33.3 5.2 29 97-125 155-184 (266)
358 PRK06125 short chain dehydroge 82.3 11 0.00023 29.6 8.2 74 48-123 6-91 (259)
359 PRK12475 thiamine/molybdopteri 82.3 4.5 9.8E-05 33.8 6.2 73 47-119 22-122 (338)
360 PRK07478 short chain dehydroge 81.7 14 0.0003 28.8 8.6 75 48-123 5-93 (254)
361 PRK03659 glutathione-regulated 81.6 6.5 0.00014 35.6 7.3 64 50-121 401-472 (601)
362 KOG2782 Putative SAM dependent 81.4 2.1 4.6E-05 33.4 3.5 61 32-92 27-88 (303)
363 COG1086 Predicted nucleoside-d 81.0 7.1 0.00015 34.8 7.0 78 48-126 249-338 (588)
364 PRK07688 thiamine/molybdopteri 81.0 5.5 0.00012 33.3 6.2 72 48-119 23-122 (339)
365 PRK09291 short chain dehydroge 81.0 9.5 0.00021 29.8 7.4 73 50-124 3-84 (257)
366 PRK08589 short chain dehydroge 80.5 14 0.00031 29.3 8.4 76 47-124 4-93 (272)
367 PRK09496 trkA potassium transp 80.4 16 0.00036 31.4 9.2 69 48-122 230-306 (453)
368 PRK07523 gluconate 5-dehydroge 80.3 15 0.00033 28.6 8.4 76 47-124 8-98 (255)
369 PRK08277 D-mannonate oxidoredu 79.5 17 0.00036 28.9 8.5 75 48-123 9-97 (278)
370 KOG0725 Reductases with broad 79.5 25 0.00054 28.3 9.4 79 46-125 5-101 (270)
371 PRK10669 putative cation:proto 79.3 11 0.00024 33.7 8.0 63 50-120 418-488 (558)
372 TIGR03206 benzo_BadH 2-hydroxy 79.1 18 0.00038 28.0 8.4 75 48-124 2-91 (250)
373 cd01487 E1_ThiF_like E1_ThiF_l 79.1 8.1 0.00018 28.9 6.1 31 51-81 1-33 (174)
374 PRK06935 2-deoxy-D-gluconate 3 78.9 18 0.00039 28.3 8.4 76 47-124 13-102 (258)
375 PLN03209 translocon at the inn 78.9 11 0.00024 33.8 7.7 76 46-123 77-169 (576)
376 cd00757 ThiF_MoeB_HesA_family 78.9 6.1 0.00013 30.9 5.6 72 48-119 20-117 (228)
377 PRK08644 thiamine biosynthesis 78.8 7 0.00015 30.3 5.8 33 48-80 27-61 (212)
378 PRK13394 3-hydroxybutyrate deh 78.5 20 0.00043 28.0 8.5 76 47-124 5-95 (262)
379 PRK08703 short chain dehydroge 78.1 26 0.00057 27.0 9.0 75 47-123 4-97 (239)
380 cd08283 FDH_like_1 Glutathione 78.0 6 0.00013 33.4 5.7 44 47-90 183-228 (386)
381 PRK06720 hypothetical protein; 77.8 26 0.00056 26.0 8.4 77 48-125 15-105 (169)
382 cd05564 PTS_IIB_chitobiose_lic 77.8 4.4 9.4E-05 27.1 3.9 50 55-121 4-54 (96)
383 PRK09242 tropinone reductase; 77.7 20 0.00044 28.0 8.4 76 48-124 8-99 (257)
384 PRK07814 short chain dehydroge 77.7 21 0.00046 28.1 8.5 75 47-123 8-97 (263)
385 PRK06113 7-alpha-hydroxysteroi 77.6 20 0.00044 28.0 8.3 75 48-123 10-98 (255)
386 PRK12939 short chain dehydroge 77.6 24 0.00051 27.3 8.7 75 47-123 5-94 (250)
387 PRK07062 short chain dehydroge 77.6 19 0.00042 28.3 8.3 77 47-124 6-98 (265)
388 PRK06949 short chain dehydroge 77.5 21 0.00046 27.8 8.4 75 47-123 7-96 (258)
389 PRK06196 oxidoreductase; Provi 77.5 26 0.00057 28.5 9.2 72 47-124 24-110 (315)
390 PRK05872 short chain dehydroge 77.4 19 0.0004 29.1 8.2 76 47-124 7-96 (296)
391 PRK08643 acetoin reductase; Va 77.4 20 0.00044 27.9 8.3 74 49-124 2-90 (256)
392 PRK12429 3-hydroxybutyrate deh 77.2 23 0.0005 27.5 8.5 75 48-124 3-92 (258)
393 COG2933 Predicted SAM-dependen 77.0 9.9 0.00021 30.7 6.1 69 47-122 210-279 (358)
394 PRK12826 3-ketoacyl-(acyl-carr 76.8 24 0.00053 27.2 8.6 76 48-125 5-95 (251)
395 PRK09424 pntA NAD(P) transhydr 76.8 7.6 0.00017 34.4 6.0 42 47-89 163-206 (509)
396 PRK07454 short chain dehydroge 76.4 23 0.00051 27.3 8.3 75 48-124 5-94 (241)
397 PRK07231 fabG 3-ketoacyl-(acyl 76.2 24 0.00052 27.2 8.4 73 48-123 4-91 (251)
398 COG1062 AdhC Zn-dependent alco 76.1 10 0.00022 31.8 6.1 45 46-90 183-229 (366)
399 KOG1205 Predicted dehydrogenas 76.1 41 0.00089 27.4 9.6 79 47-126 10-104 (282)
400 PF05206 TRM13: Methyltransfer 75.9 10 0.00022 30.5 6.1 34 48-81 18-57 (259)
401 cd00401 AdoHcyase S-adenosyl-L 75.8 9.6 0.00021 32.8 6.3 60 26-89 182-243 (413)
402 PRK07576 short chain dehydroge 75.8 26 0.00056 27.7 8.5 74 47-122 7-95 (264)
403 KOG2013 SMT3/SUMO-activating c 75.6 5.1 0.00011 35.0 4.4 72 48-119 11-109 (603)
404 PRK08085 gluconate 5-dehydroge 75.6 24 0.00052 27.5 8.3 74 48-123 8-96 (254)
405 PF13651 EcoRI_methylase: Aden 75.3 5.1 0.00011 33.1 4.2 68 113-187 135-205 (336)
406 PLN02819 lysine-ketoglutarate 75.3 23 0.0005 34.3 9.1 72 48-123 568-658 (1042)
407 PRK08945 putative oxoacyl-(acy 75.2 25 0.00054 27.3 8.2 74 47-122 10-101 (247)
408 COG4301 Uncharacterized conser 75.0 42 0.00091 27.0 10.9 104 47-150 77-191 (321)
409 COG3510 CmcI Cephalosporin hyd 74.8 6.1 0.00013 30.3 4.2 59 47-109 68-131 (237)
410 PRK07792 fabG 3-ketoacyl-(acyl 74.7 25 0.00054 28.6 8.3 77 47-124 10-100 (306)
411 TIGR00571 dam DNA adenine meth 74.6 6.9 0.00015 31.5 4.9 54 26-86 7-60 (266)
412 PRK05786 fabG 3-ketoacyl-(acyl 74.5 28 0.0006 26.7 8.3 72 48-122 4-90 (238)
413 PRK08762 molybdopterin biosynt 74.4 9.3 0.0002 32.4 5.9 34 47-80 133-168 (376)
414 PRK08328 hypothetical protein; 74.3 12 0.00027 29.3 6.2 33 48-80 26-60 (231)
415 PRK14106 murD UDP-N-acetylmura 74.3 20 0.00043 30.9 8.0 73 48-124 4-79 (450)
416 cd01488 Uba3_RUB Ubiquitin act 73.9 17 0.00037 29.7 7.0 69 51-119 1-94 (291)
417 COG0300 DltE Short-chain dehyd 73.7 42 0.0009 27.1 9.0 79 47-126 4-97 (265)
418 PRK09072 short chain dehydroge 73.6 30 0.00066 27.1 8.4 75 48-124 4-91 (263)
419 PRK07533 enoyl-(acyl carrier p 73.5 21 0.00046 28.1 7.5 76 47-124 8-99 (258)
420 KOG0022 Alcohol dehydrogenase, 73.4 12 0.00026 31.1 5.9 44 47-90 191-236 (375)
421 COG0771 MurD UDP-N-acetylmuram 73.3 11 0.00024 32.8 6.1 75 48-126 6-82 (448)
422 PRK12481 2-deoxy-D-gluconate 3 72.9 25 0.00055 27.5 7.8 75 47-124 6-94 (251)
423 PRK03562 glutathione-regulated 72.8 16 0.00035 33.3 7.2 65 49-120 400-471 (621)
424 PRK05650 short chain dehydroge 72.4 30 0.00064 27.3 8.1 72 51-124 2-88 (270)
425 PF01555 N6_N4_Mtase: DNA meth 72.3 11 0.00024 28.7 5.5 15 114-128 1-15 (231)
426 PLN02662 cinnamyl-alcohol dehy 72.0 16 0.00035 29.6 6.7 73 48-122 3-85 (322)
427 PLN02780 ketoreductase/ oxidor 72.0 23 0.00049 29.2 7.5 59 48-107 52-115 (320)
428 PRK09880 L-idonate 5-dehydroge 71.6 18 0.00038 29.9 6.8 45 45-89 166-212 (343)
429 PLN02427 UDP-apiose/xylose syn 71.6 13 0.00028 31.4 6.1 71 47-118 12-91 (386)
430 PRK06138 short chain dehydroge 71.4 35 0.00076 26.4 8.2 74 48-124 4-92 (252)
431 PRK08340 glucose-1-dehydrogena 71.4 26 0.00057 27.5 7.5 71 51-123 2-86 (259)
432 PRK07326 short chain dehydroge 71.2 32 0.0007 26.3 7.9 72 48-122 5-91 (237)
433 PRK07024 short chain dehydroge 71.1 25 0.00054 27.6 7.3 71 50-123 3-88 (257)
434 PF02719 Polysacc_synt_2: Poly 71.1 6.3 0.00014 32.2 3.9 71 56-126 4-90 (293)
435 TIGR01712 phage_N6A_met phage 70.9 36 0.00079 25.4 7.5 39 116-159 64-106 (166)
436 PRK06197 short chain dehydroge 70.8 37 0.0008 27.4 8.5 75 47-123 14-105 (306)
437 PF03721 UDPG_MGDP_dh_N: UDP-g 70.8 11 0.00023 28.6 4.9 38 51-89 2-41 (185)
438 PRK07666 fabG 3-ketoacyl-(acyl 70.7 45 0.00097 25.6 8.6 75 48-124 6-95 (239)
439 PRK06181 short chain dehydroge 70.6 35 0.00075 26.7 8.1 72 50-123 2-88 (263)
440 PRK06701 short chain dehydroge 70.4 35 0.00076 27.5 8.2 77 46-123 43-134 (290)
441 PRK07453 protochlorophyllide o 70.4 32 0.00069 28.1 8.1 74 48-123 5-93 (322)
442 PRK07831 short chain dehydroge 70.1 44 0.00095 26.2 8.6 76 48-124 16-108 (262)
443 PLN02668 indole-3-acetate carb 70.1 3.5 7.6E-05 35.1 2.3 19 49-67 64-82 (386)
444 PRK08267 short chain dehydroge 69.7 29 0.00063 27.1 7.5 72 50-125 2-89 (260)
445 PRK08265 short chain dehydroge 69.7 36 0.00078 26.8 8.0 73 47-123 4-90 (261)
446 COG4889 Predicted helicase [Ge 69.6 7.9 0.00017 36.7 4.5 45 48-92 845-899 (1518)
447 COG3392 Adenine-specific DNA m 69.3 2.8 6.1E-05 33.6 1.5 42 99-140 189-230 (330)
448 PRK06198 short chain dehydroge 69.2 44 0.00096 26.0 8.4 76 47-123 4-94 (260)
449 COG0338 Dam Site-specific DNA 69.0 3.5 7.6E-05 33.4 2.0 54 26-86 8-61 (274)
450 PRK10904 DNA adenine methylase 68.3 6 0.00013 31.9 3.2 29 97-125 157-186 (271)
451 PF10354 DUF2431: Domain of un 68.3 42 0.0009 24.9 7.5 69 57-125 3-87 (166)
452 PLN02989 cinnamyl-alcohol dehy 68.1 25 0.00055 28.6 7.0 74 48-123 4-87 (325)
453 PRK01438 murD UDP-N-acetylmura 68.1 46 0.001 29.0 9.0 72 48-124 15-89 (480)
454 PRK08415 enoyl-(acyl carrier p 68.1 37 0.00081 27.1 7.8 75 48-124 4-94 (274)
455 TIGR03589 PseB UDP-N-acetylglu 68.1 25 0.00053 28.9 6.9 73 48-123 3-84 (324)
456 PRK08416 7-alpha-hydroxysteroi 68.0 32 0.00069 27.0 7.4 75 47-122 6-96 (260)
457 KOG1207 Diacetyl reductase/L-x 68.0 25 0.00053 26.8 6.1 58 47-108 5-65 (245)
458 KOG2811 Uncharacterized conser 67.9 26 0.00055 29.7 6.7 59 50-108 184-246 (420)
459 cd01484 E1-2_like Ubiquitin ac 67.7 30 0.00064 27.3 7.0 68 52-119 2-97 (234)
460 TIGR00027 mthyl_TIGR00027 meth 67.6 62 0.0014 25.9 9.2 108 32-142 65-187 (260)
461 PRK07201 short chain dehydroge 67.4 37 0.00081 30.8 8.5 76 47-124 369-459 (657)
462 PRK05855 short chain dehydroge 67.0 40 0.00086 29.8 8.5 75 48-124 314-403 (582)
463 PRK08993 2-deoxy-D-gluconate 3 67.0 41 0.00089 26.2 7.8 74 47-124 8-96 (253)
464 TIGR02415 23BDH acetoin reduct 66.8 47 0.001 25.7 8.1 72 51-124 2-88 (254)
465 PRK09590 celB cellobiose phosp 66.7 12 0.00026 25.5 4.0 50 55-121 6-58 (104)
466 PRK12829 short chain dehydroge 66.7 51 0.0011 25.7 8.3 74 47-124 9-97 (264)
467 PRK07774 short chain dehydroge 66.6 57 0.0012 25.1 8.5 75 48-124 5-94 (250)
468 PRK06914 short chain dehydroge 66.5 48 0.001 26.2 8.2 74 49-124 3-92 (280)
469 PRK12823 benD 1,6-dihydroxycyc 66.5 49 0.0011 25.8 8.1 74 47-122 6-93 (260)
470 PRK08628 short chain dehydroge 66.4 43 0.00094 26.1 7.8 74 47-123 5-93 (258)
471 PRK13656 trans-2-enoyl-CoA red 66.3 55 0.0012 28.1 8.6 78 48-126 40-144 (398)
472 KOG2539 Mitochondrial/chloropl 66.1 17 0.00036 31.7 5.5 101 32-132 184-293 (491)
473 cd08237 ribitol-5-phosphate_DH 65.5 17 0.00037 30.1 5.5 43 47-89 162-207 (341)
474 PLN02896 cinnamyl-alcohol dehy 65.4 33 0.00072 28.4 7.3 73 48-123 9-89 (353)
475 PRK06182 short chain dehydroge 65.4 34 0.00075 27.0 7.1 70 48-125 2-86 (273)
476 PLN02253 xanthoxin dehydrogena 65.3 48 0.001 26.3 8.0 74 47-123 16-104 (280)
477 PF02086 MethyltransfD12: D12 64.8 12 0.00027 29.4 4.4 41 81-125 147-189 (260)
478 PRK06200 2,3-dihydroxy-2,3-dih 64.8 48 0.001 26.0 7.8 74 47-124 4-91 (263)
479 PRK05597 molybdopterin biosynt 64.4 22 0.00048 29.9 6.0 73 48-120 27-125 (355)
480 TIGR01963 PHB_DH 3-hydroxybuty 64.2 55 0.0012 25.2 8.1 72 50-123 2-88 (255)
481 cd01489 Uba2_SUMO Ubiquitin ac 64.2 29 0.00063 28.7 6.5 69 51-119 1-96 (312)
482 cd00755 YgdL_like Family of ac 64.2 21 0.00046 28.1 5.5 33 48-80 10-44 (231)
483 COG4221 Short-chain alcohol de 64.2 44 0.00096 26.6 7.2 76 48-126 5-94 (246)
484 PRK08251 short chain dehydroge 64.1 57 0.0012 25.2 8.1 74 49-124 2-92 (248)
485 PLN00141 Tic62-NAD(P)-related 64.1 44 0.00096 26.1 7.5 71 48-124 16-96 (251)
486 TIGR01832 kduD 2-deoxy-D-gluco 63.8 57 0.0012 25.2 8.0 75 47-124 3-91 (248)
487 PRK05690 molybdopterin biosynt 63.7 27 0.00058 27.7 6.1 33 48-80 31-65 (245)
488 PRK06079 enoyl-(acyl carrier p 63.6 43 0.00092 26.2 7.3 74 47-124 5-94 (252)
489 cd01492 Aos1_SUMO Ubiquitin ac 63.6 37 0.00081 25.9 6.7 73 48-120 20-117 (197)
490 PRK06114 short chain dehydroge 63.2 66 0.0014 25.0 8.3 76 47-124 6-97 (254)
491 PRK15116 sulfur acceptor prote 63.1 45 0.00098 27.0 7.3 34 47-80 28-63 (268)
492 PRK06505 enoyl-(acyl carrier p 62.9 44 0.00096 26.6 7.3 76 47-124 5-96 (271)
493 COG0569 TrkA K+ transport syst 62.7 28 0.00061 27.2 6.0 62 51-120 2-73 (225)
494 PRK06500 short chain dehydroge 62.6 64 0.0014 24.8 8.1 72 48-124 5-91 (249)
495 PRK01747 mnmC bifunctional tRN 62.4 15 0.00032 33.7 4.9 74 48-121 57-174 (662)
496 PRK08278 short chain dehydroge 62.3 53 0.0011 26.1 7.7 76 48-124 5-101 (273)
497 TIGR03366 HpnZ_proposed putati 62.1 48 0.001 26.4 7.4 45 45-89 117-163 (280)
498 PRK08690 enoyl-(acyl carrier p 61.6 52 0.0011 25.9 7.5 76 47-124 4-95 (261)
499 cd01483 E1_enzyme_family Super 61.3 44 0.00096 23.7 6.4 30 51-80 1-32 (143)
500 PRK03369 murD UDP-N-acetylmura 61.2 38 0.00083 29.8 7.1 70 48-125 11-82 (488)
No 1
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-32 Score=199.14 Aligned_cols=197 Identities=41% Similarity=0.706 Sum_probs=176.5
Q ss_pred hHHHHHHhccCCCCCCcccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChH
Q 028214 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD 82 (212)
Q Consensus 3 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~ 82 (212)
++.|+..++.+++|.+|...++||.|++++++.++..+... +...+++|+|+|||||.+++.++..|+.+|+++|+|++
T Consensus 1 kk~Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~ 79 (198)
T COG2263 1 KKELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE 79 (198)
T ss_pred CchhhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence 46789999999999999999999999999999999888744 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHH
Q 028214 83 SLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 83 ~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
+++.+++|....+.++++..+|+.++.. .+|.+++||||....+..+..++..++.... .+|.+++.++++++...+
T Consensus 80 a~ei~r~N~~~l~g~v~f~~~dv~~~~~--~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-vVYsiH~a~~~~f~~~~~ 156 (198)
T COG2263 80 ALEIARANAEELLGDVEFVVADVSDFRG--KFDTVIMNPPFGSQRRHADRPFLLKALEISD-VVYSIHKAGSRDFVEKFA 156 (198)
T ss_pred HHHHHHHHHHhhCCceEEEEcchhhcCC--ccceEEECCCCccccccCCHHHHHHHHHhhh-eEEEeeccccHHHHHHHH
Confidence 9999999999866689999999998866 6999999999999888899999999998886 999999999999998877
Q ss_pred HhhcCCcceeEEEEEeecCCcccccccceeeeEEEEEEEEEee
Q 028214 163 LRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK 205 (212)
Q Consensus 163 ~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (212)
..++ ..........+.+|..+.||.++..++.+.++++.+.
T Consensus 157 -~~~G-~~v~~~~~~~~~iP~~y~fH~k~~~~I~v~i~r~~k~ 197 (198)
T COG2263 157 -ADLG-GTVTHIERARFPIPRTYPFHRKRVRRIEVDIFRFEKG 197 (198)
T ss_pred -HhcC-CeEEEEEEEEEecCccCchhhheeeeeeEEEEEEEec
Confidence 4443 2344555667899999999999999999999999864
No 2
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-31 Score=189.14 Aligned_cols=184 Identities=59% Similarity=0.983 Sum_probs=170.5
Q ss_pred CchHHHHHHhccCCCCCCcccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCC
Q 028214 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID 80 (212)
Q Consensus 1 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~ 80 (212)
|+.++++..++++++|.++...++||+|++.+++.|+...-..+++..+++++|+|||+|-+++.++-.+...|+|+|++
T Consensus 1 m~~Kel~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId 80 (185)
T KOG3420|consen 1 MRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID 80 (185)
T ss_pred CchHHHHHHHHHhccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC
Confidence 68899999999999999999999999999999999999999998999999999999999999977776677799999999
Q ss_pred hHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHH
Q 028214 81 SDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVK 159 (212)
Q Consensus 81 ~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (212)
|++++.+.+|++...+++++.+.|+.+..+.. .||.++.||||.....+++..+++.++.... .+|.++++++|+++.
T Consensus 81 peALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~-~VySLHKtSTRey~~ 159 (185)
T KOG3420|consen 81 PEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGTKKKGADMEFVSAALKVAS-AVYSLHKTSTREYRY 159 (185)
T ss_pred HHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCcccccccHHHHHHHHHHHH-HHHHHhcccHHHHHH
Confidence 99999999999998888999999999987766 8999999999999989999999999988877 899999999998763
Q ss_pred HHHHhhcCCcceeEEEEEeecCCcccccccceeeeEEEEEEEEEee
Q 028214 160 KAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK 205 (212)
Q Consensus 160 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (212)
. +|+.+.||++...++.|++|||.+.
T Consensus 160 k--------------------LP~~ykFHK~k~vdiaVDlirfe~r 185 (185)
T KOG3420|consen 160 K--------------------LPKLYKFHKRKEVDIAVDLIRFEPR 185 (185)
T ss_pred h--------------------cchhhhhhhccccceeeeEEEeecC
Confidence 3 6999999999999999999999863
No 3
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=128.67 Aligned_cols=141 Identities=18% Similarity=0.249 Sum_probs=99.6
Q ss_pred cccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--c
Q 028214 21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--D 97 (212)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~ 97 (212)
....|-....+...+.+....+. ......+|||+|||+|.+++.++.+ ...+++++|+++.+.+.|++|++.+++ +
T Consensus 18 ~~I~q~~~~~~~~~DaiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~r 96 (248)
T COG4123 18 FFIIQDRCGFRYGTDAILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEER 96 (248)
T ss_pred eEEEeCCCccccccHHHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhc
Confidence 33444444444444444444443 2234789999999999999999976 557999999999999999999999887 8
Q ss_pred eEEEEcccccCcCCC---cccEEEEcCCCCCCCCC----------------chHHHHHHHHhhcC--ceEEEEecCchHH
Q 028214 98 IDFVQCDIRNLEWRG---HVDTVVMNPPFGTRKKG----------------VDMDFLSMALKVAS--QAVYSLHKTSTRE 156 (212)
Q Consensus 98 v~~~~~d~~~~~~~~---~~D~i~~nppy~~~~~~----------------~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 156 (212)
++++++|+..+.... +||+|+|||||...... ....|++.+....+ +.+++++.+....
T Consensus 97 i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ 176 (248)
T COG4123 97 IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLA 176 (248)
T ss_pred eeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHH
Confidence 999999999887654 69999999999876332 11234444444432 3555555655555
Q ss_pred HHHHHH
Q 028214 157 HVKKAA 162 (212)
Q Consensus 157 ~~~~~~ 162 (212)
.+.+..
T Consensus 177 ei~~~l 182 (248)
T COG4123 177 EIIELL 182 (248)
T ss_pred HHHHHH
Confidence 555544
No 4
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.73 E-value=1.8e-16 Score=119.14 Aligned_cols=109 Identities=34% Similarity=0.528 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCC-eEEEEeCChHHHHHHHHHHhhcCCc-eEEEEcccccC
Q 028214 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNL 108 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~-v~~~~~d~~~~ 108 (212)
...+.++....... +..++||+|||+|.+++.+++.... +|+++|+|+.+++.+++|++.++.. +++++.|+.+.
T Consensus 17 d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT
T ss_pred CHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 34555666655542 7789999999999999999987553 7999999999999999999999884 99999999887
Q ss_pred cCCCcccEEEEcCCCCCCCC-C--chHHHHHHHHhhc
Q 028214 109 EWRGHVDTVVMNPPFGTRKK-G--VDMDFLSMALKVA 142 (212)
Q Consensus 109 ~~~~~~D~i~~nppy~~~~~-~--~~~~~l~~~~~~~ 142 (212)
....+||+|++|||++.... + ....+++.+.+.+
T Consensus 94 ~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~L 130 (170)
T PF05175_consen 94 LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYL 130 (170)
T ss_dssp CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHE
T ss_pred ccccceeEEEEccchhcccccchhhHHHHHHHHHHhc
Confidence 76569999999999876532 1 2234555555444
No 5
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.72 E-value=7.7e-17 Score=122.11 Aligned_cols=150 Identities=17% Similarity=0.323 Sum_probs=101.6
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEE
Q 028214 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQ 102 (212)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~ 102 (212)
-.||+..+..++.+.+... ...+.++||++||||.+++++.++|+..|+.+|.|+.+++.+++|++..+. +++++.
T Consensus 21 ~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 21 TRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp S-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred cCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 3678877777776665543 258999999999999999999999999999999999999999999998887 589999
Q ss_pred cccccCcC-----CCcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHHHhhcCCcceeEEEEE
Q 028214 103 CDIRNLEW-----RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCEL 177 (212)
Q Consensus 103 ~d~~~~~~-----~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~ 177 (212)
.|+..... ..+||+|++||||..... ....+..... ...+. +++.++.|+
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~----------------------~~~l~-~~~~ii~E~ 153 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAE----------------------NNLLN-EDGLIIIEH 153 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHH----------------------TTSEE-EEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHH----------------------CCCCC-CCEEEEEEe
Confidence 99765441 238999999999975311 1122222110 02333 788888888
Q ss_pred eec--CCc---cc-ccccceeeeEEEEEEE
Q 028214 178 RYD--VPQ---LY-KFHKKKEVDIAVDLWR 201 (212)
Q Consensus 178 ~~~--~~~---~~-~~~~~~~~~~~~~~~~ 201 (212)
... +|. .+ .+..+.||.+.+.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 183 (183)
T PF03602_consen 154 SKKEDLPESPGNWELIKERKYGDTKLSFYQ 183 (183)
T ss_dssp ETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred cCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence 753 333 23 2345788999999886
No 6
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.71 E-value=1.9e-16 Score=132.82 Aligned_cols=126 Identities=23% Similarity=0.393 Sum_probs=101.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
+++++.....++..+...+...++.++||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|++.++. +++++++|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 677777777776655554333466899999999999999999765 5899999999999999999999887 89999999
Q ss_pred cccCcCC--CcccEEEEcCCCCCCCCCchHHHHHHHHhhc-CceEEEEecCchHH
Q 028214 105 IRNLEWR--GHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-SQAVYSLHKTSTRE 156 (212)
Q Consensus 105 ~~~~~~~--~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 156 (212)
+.++... .+||+|++|||+ .+.....++.+.... +..+|++|+|.+.+
T Consensus 290 ~~~~~~~~~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc~p~Tla 340 (374)
T TIGR02085 290 SAKFATAQMSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSCNAQTMA 340 (374)
T ss_pred HHHHHHhcCCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEeCHHHHH
Confidence 9876432 269999999996 356666666666554 36999999998853
No 7
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.71 E-value=4.6e-16 Score=119.29 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
.|+...+...++..+.. ..++.++||+|||+|.++++++..++.+|+++|+++.+++.+++|++.++. +++++++|
T Consensus 34 Rp~~d~v~e~l~~~l~~---~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhh---hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch
Confidence 34444554444444332 135789999999999999987666677999999999999999999998887 79999999
Q ss_pred cccCcC--CCcccEEEEcCCCCC
Q 028214 105 IRNLEW--RGHVDTVVMNPPFGT 125 (212)
Q Consensus 105 ~~~~~~--~~~~D~i~~nppy~~ 125 (212)
+.+... ...||+|++||||..
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCC
Confidence 987542 226999999999963
No 8
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.1e-16 Score=133.85 Aligned_cols=129 Identities=26% Similarity=0.414 Sum_probs=116.1
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEE
Q 028214 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQ 102 (212)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~ 102 (212)
..|++++.....|+..+...++..++++++|+.||.|.+++.+|.. ..+|+|+|+++.+++.|++|++.|+. |+++..
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~ 347 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIA 347 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 4578888899999999999888778899999999999999999975 66999999999999999999999998 899999
Q ss_pred cccccCcCCC----cccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEecCchHHH
Q 028214 103 CDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTREH 157 (212)
Q Consensus 103 ~d~~~~~~~~----~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 157 (212)
++++++.... .+|.|+.||| +.|.+..+++.+.+... ..+|++|+|.|.+.
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAKLKPKRIVYVSCNPATLAR 403 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCC----CCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHH
Confidence 9999987653 7899999999 99999999999888875 68999999998653
No 9
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.70 E-value=3.9e-16 Score=128.30 Aligned_cols=126 Identities=25% Similarity=0.428 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
|++++.....++..+...+...++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|++|++.++. +++++++|
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D 229 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALD 229 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Confidence 566666676666555554444467899999999999999999875 5999999999999999999999887 79999999
Q ss_pred cccCcCC--CcccEEEEcCCCCCCCCCchHHHHHHHHhhc-CceEEEEecCchHH
Q 028214 105 IRNLEWR--GHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-SQAVYSLHKTSTRE 156 (212)
Q Consensus 105 ~~~~~~~--~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 156 (212)
+.++... .+||+|++|||. .+.....++...... +..+|++|+|.+..
T Consensus 230 ~~~~~~~~~~~~D~Vv~dPPr----~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~ 280 (315)
T PRK03522 230 STQFATAQGEVPDLVLVNPPR----RGIGKELCDYLSQMAPRFILYSSCNAQTMA 280 (315)
T ss_pred HHHHHHhcCCCCeEEEECCCC----CCccHHHHHHHHHcCCCeEEEEECCcccch
Confidence 9876532 379999999994 344444444444333 46999999999854
No 10
>PHA03412 putative methyltransferase; Provisional
Probab=99.70 E-value=4.8e-16 Score=120.56 Aligned_cols=97 Identities=20% Similarity=0.364 Sum_probs=79.9
Q ss_pred ccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhcC
Q 028214 20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLE 95 (212)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~ 95 (212)
..+..||.||+.++..++.. . ..+.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|++|..
T Consensus 27 ~~~~GqFfTP~~iAr~~~i~---~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--- 97 (241)
T PHA03412 27 NSELGAFFTPIGLARDFTID---A---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--- 97 (241)
T ss_pred cccCCccCCCHHHHHHHHHh---c---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---
Confidence 56678999999998876532 1 24679999999999999998864 24589999999999999998864
Q ss_pred CceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 96 LDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 96 ~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
++.++++|+.......+||+|++||||...
T Consensus 98 -~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 98 -EATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred -CCEEEEcchhcccccCCccEEEECCCCCCc
Confidence 478999999876654589999999999865
No 11
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2e-15 Score=113.01 Aligned_cols=152 Identities=20% Similarity=0.300 Sum_probs=109.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~ 103 (212)
.||...+...+.+..... ...+.++||+++|||.++++++++|+..++.+|.|..++...++|++..+. +++++..
T Consensus 23 RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 23 RPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 677766666665554431 358999999999999999999999999999999999999999999999884 7899999
Q ss_pred ccccCcCC--C--cccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHHHhhcCCcceeEEEEEee
Q 028214 104 DIRNLEWR--G--HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY 179 (212)
Q Consensus 104 d~~~~~~~--~--~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~ 179 (212)
|+...... . .||+|+.||||+.. .....+.-.. -.....|. +++.+++|+.-
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~---l~~~~~~~~~--------------------~~~~~~L~-~~~~iv~E~~~ 156 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKG---LLDKELALLL--------------------LEENGWLK-PGALIVVEHDK 156 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccc---hhhHHHHHHH--------------------HHhcCCcC-CCcEEEEEeCC
Confidence 99855322 2 49999999999832 1111111000 00002233 78888888774
Q ss_pred c--C---Cccccc-ccceeeeEEEEEEEEE
Q 028214 180 D--V---PQLYKF-HKKKEVDIAVDLWRFV 203 (212)
Q Consensus 180 ~--~---~~~~~~-~~~~~~~~~~~~~~~~ 203 (212)
. + |..+.. ..+.+|.+.+.+|++.
T Consensus 157 ~~~~~~~~~~~~~~r~k~yG~t~l~~y~~~ 186 (187)
T COG0742 157 DVELPELPANFELHREKKYGQTKLTFYRRE 186 (187)
T ss_pred CcCccccCCCeEEEEEeecCCEEEEEEEec
Confidence 3 3 444444 4488899999999763
No 12
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.68 E-value=1.6e-15 Score=123.75 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=108.0
Q ss_pred hHHHHHHhccCCCCCCcccccccCCCChHHHHHHHHH-HHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCCh
Q 028214 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYT-AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (212)
Q Consensus 3 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~ 81 (212)
++.|+..++.+.+|.++...+++|.++..+++.+... ....+...++++|||+|||+|.++..++..+...|+|+|.++
T Consensus 75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~ 154 (314)
T TIGR00452 75 IKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV 154 (314)
T ss_pred HHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 5789999999999999999999999999999998865 444445678899999999999999999888777899999999
Q ss_pred HHHHHHHHHHhhc--CCceEEEEcccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhc
Q 028214 82 DSLELASENAADL--ELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 142 (212)
Q Consensus 82 ~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~ 142 (212)
.++..++...+.. ..++.+...++.+++...+||+|+++-.++|..+ ....++++.+.+
T Consensus 155 ~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H~~d--p~~~L~el~r~L 215 (314)
T TIGR00452 155 LFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYHRKS--PLEHLKQLKHQL 215 (314)
T ss_pred HHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhccCC--HHHHHHHHHHhc
Confidence 9887654322221 1267888899988876568999999887766532 234555555544
No 13
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.1e-15 Score=123.24 Aligned_cols=127 Identities=24% Similarity=0.308 Sum_probs=89.1
Q ss_pred EEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCCCCCCC-
Q 028214 51 VVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRK- 127 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~- 127 (212)
+|+|+|||||.+++.++... ..+|+|+|+|+.+++.|++|+..+++ ++.++++|+.+.... +||+|++||||....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC-ceeEEEeCCCCCCCcc
Confidence 79999999999999999764 35999999999999999999999985 667777787776555 899999999998764
Q ss_pred CCchHHHHH--HHHhhcCceEEEEecCchHHHHHHHHHhhcCCcceeEEEEEeecCCc
Q 028214 128 KGVDMDFLS--MALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQ 183 (212)
Q Consensus 128 ~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~ 183 (212)
.......+. -......+. ....-...+...+.+.++ +++.+++|.++...+
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l~-~~g~l~le~g~~q~~ 244 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDILK-PGGVLILEIGLTQGE 244 (280)
T ss_pred cccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHcC-CCcEEEEEECCCcHH
Confidence 111111111 111111100 011124455555657777 788999999975543
No 14
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.67 E-value=7.8e-16 Score=131.98 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=95.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccc
Q 028214 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (212)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (212)
+.++.....++..+...+...++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|++.++. +++++++|+
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~ 354 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL 354 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence 55555666666666665555577899999999999999999875 5899999999999999999998887 799999999
Q ss_pred ccCcC-----CCcccEEEEcCCCCCCCCCchHHHHHHHHhhc-CceEEEEecCchHH
Q 028214 106 RNLEW-----RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-SQAVYSLHKTSTRE 156 (212)
Q Consensus 106 ~~~~~-----~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 156 (212)
.+... ..+||+|++||||.- .. ..++...+.. +..+|++|+|.+.+
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~g----~~-~~~~~l~~~~~~~ivyvSCnp~tla 406 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRAG----AA-EVMQALAKLGPKRIVYVSCNPATLA 406 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCcC----hH-HHHHHHHhcCCCeEEEEEeChHHhh
Confidence 76432 137999999999753 22 3444444433 46999999998853
No 15
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.66 E-value=3.4e-15 Score=113.89 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=78.5
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~ 103 (212)
+||...+...+....... ..+.++||++||+|.++++++++|+..|+++|.|+.+++.+++|++.++. +++++++
T Consensus 30 rpt~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~ 106 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRN 106 (189)
T ss_pred CCchHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEeh
Confidence 566655555555543332 46889999999999999999999888999999999999999999998876 5899999
Q ss_pred ccccCcC----CC-cccEEEEcCCCCC
Q 028214 104 DIRNLEW----RG-HVDTVVMNPPFGT 125 (212)
Q Consensus 104 d~~~~~~----~~-~~D~i~~nppy~~ 125 (212)
|+.+... .. .||+|+.||||..
T Consensus 107 D~~~~l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 107 SALRALKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred hHHHHHHHhhccCCCceEEEECcCCCC
Confidence 9966432 12 4899999999963
No 16
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.66 E-value=1.1e-14 Score=110.42 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
.++++|||+|||+|.++..++..+. +|+++|+|+.+++.+++|+..++.+++++++|+.+... .+||+|++||||++.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVR-GKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccC-CcccEEEECCCCCCC
Confidence 3667899999999999999998766 89999999999999999999887788999999877653 389999999999866
No 17
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.66 E-value=8.5e-16 Score=108.20 Aligned_cols=78 Identities=40% Similarity=0.646 Sum_probs=66.8
Q ss_pred CCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCc--C-CCcccEEEEcCCC
Q 028214 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE--W-RGHVDTVVMNPPF 123 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~--~-~~~~D~i~~nppy 123 (212)
|.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.++.++...+. +++++++|+.+.. . ..+||+|++||||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988757999999999999999999999876 7999999999886 2 2399999999999
Q ss_pred CCC
Q 028214 124 GTR 126 (212)
Q Consensus 124 ~~~ 126 (212)
...
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 854
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.66 E-value=3.8e-15 Score=116.75 Aligned_cols=93 Identities=30% Similarity=0.328 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCc
Q 028214 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGH 113 (212)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (212)
+.++..........++.+|||+|||+|.+++.+++.+..+++++|+|+.+++.+++|+..++.+++++++|+.+.....+
T Consensus 22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCC
Confidence 34444444443445678999999999999999998766699999999999999999998887778899999987544458
Q ss_pred ccEEEEcCCCCCC
Q 028214 114 VDTVVMNPPFGTR 126 (212)
Q Consensus 114 ~D~i~~nppy~~~ 126 (212)
||+|++||||...
T Consensus 102 fD~Vi~npPy~~~ 114 (223)
T PRK14967 102 FDVVVSNPPYVPA 114 (223)
T ss_pred eeEEEECCCCCCC
Confidence 9999999999764
No 19
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.65 E-value=4.7e-15 Score=122.59 Aligned_cols=92 Identities=30% Similarity=0.415 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccC
Q 028214 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (212)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (212)
+.++..++..+ ...+++++||+|||+|.++++++..+. +++|+|+|+.+++.+++|++..+. ++++.++|+.++
T Consensus 168 ~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l 242 (329)
T TIGR01177 168 PKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence 34454444433 234778999999999999999888754 899999999999999999998876 678999999998
Q ss_pred cCCC-cccEEEEcCCCCCC
Q 028214 109 EWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 109 ~~~~-~~D~i~~nppy~~~ 126 (212)
+... +||+|++||||...
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRS 261 (329)
T ss_pred CcccCCCCEEEECCCCcCc
Confidence 7654 89999999999765
No 20
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.64 E-value=4e-15 Score=124.30 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=96.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
|+.++.....++..+...+.. .+.++||++||+|.+++.+++. ..+|+|+|+++.+++.|++|+..++. +++++++|
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d 262 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMS 262 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 555666666666666655332 2357999999999999988875 56999999999999999999999988 79999999
Q ss_pred cccCcCC----------------C-cccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchH
Q 028214 105 IRNLEWR----------------G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR 155 (212)
Q Consensus 105 ~~~~~~~----------------~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (212)
+.++... . +||+|++|||+ .+.....++.+.. .+..+|++|+|.+.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR----~G~~~~~l~~l~~-~~~ivyvSC~p~tl 325 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR----AGLDDETLKLVQA-YERILYISCNPETL 325 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCCC----CCCcHHHHHHHHc-cCCEEEEEeCHHHH
Confidence 9874311 1 58999999995 4666666666655 35699999999664
No 21
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.64 E-value=3.7e-15 Score=124.66 Aligned_cols=133 Identities=25% Similarity=0.301 Sum_probs=90.9
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC--CCcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW--RGHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~nppy~ 124 (212)
++.++||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|++.++.+++++++|+.+... ..+||+|++||||.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998864 45689999999999999999999887789999999876432 23799999999997
Q ss_pred CCCCCchHHHHHHHHhhcCceEEEEecCchH---HHHHHHHHhhcCCcceeEEEEEeecCCccc
Q 028214 125 TRKKGVDMDFLSMALKVASQAVYSLHKTSTR---EHVKKAALRDFNASSAEVLCELRYDVPQLY 185 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 185 (212)
...... ..+...+..+... +.-...+. ..+...+.+.|+ ++|.++.|.++..++.+
T Consensus 331 ~~~e~~---l~~~~v~~EP~~A-L~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lilEiG~~Q~e~V 389 (423)
T PRK14966 331 ENGDKH---LLQGDLRFEPQIA-LTDFSDGLSCIRTLAQGAPDRLA-EGGFLLLEHGFDQGAAV 389 (423)
T ss_pred Ccchhh---hcchhhhcCHHHH-hhCCCchHHHHHHHHHHHHHhcC-CCcEEEEEECccHHHHH
Confidence 643211 1111111000000 00111222 244444556777 88999999998654433
No 22
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.64 E-value=4.5e-15 Score=123.53 Aligned_cols=126 Identities=23% Similarity=0.386 Sum_probs=92.9
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEE
Q 028214 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQ 102 (212)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~ 102 (212)
..++..+.....++..+...++..++ .+||+.||+|.+++.+|.. ..+|+|+|+++.+++.|++|++.++. +++++.
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIR 250 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred cCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEE
Confidence 34677788888888888887665555 8999999999999999986 56999999999999999999999998 899999
Q ss_pred cccccCcC-----------------CCcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHH
Q 028214 103 CDIRNLEW-----------------RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE 156 (212)
Q Consensus 103 ~d~~~~~~-----------------~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (212)
+++.++.. ...+|+|+.||| +.|.....++.+.+. ...+|++|+|.+.+
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~~-~~ivYvSCnP~tla 316 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP----RAGLDEKVIELIKKL-KRIVYVSCNPATLA 316 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-------TT-SCHHHHHHHHHS-SEEEEEES-HHHHH
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC----CCCchHHHHHHHhcC-CeEEEEECCHHHHH
Confidence 88765421 116899999999 889888887766543 57999999998854
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=1.6e-14 Score=109.47 Aligned_cols=140 Identities=15% Similarity=0.244 Sum_probs=96.9
Q ss_pred CCcccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC
Q 028214 17 SNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE 95 (212)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~ 95 (212)
.++..++.+..+++....+.+..........++.+|||+|||+|.+++.++..+ ..+|+++|.|+.+++.++++++.++
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~ 90 (181)
T TIGR00138 11 WNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG 90 (181)
T ss_pred HhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence 344566777777666666655554433334568999999999999999988653 4689999999999999999998887
Q ss_pred C-ceEEEEcccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC--ceEEEEecCchHHHHHHHH
Q 028214 96 L-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 96 ~-~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 162 (212)
. +++++++|+.++....+||+|+++. ++. ....++.+.+..+ +.+++...+.....+...-
T Consensus 91 ~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~ 154 (181)
T TIGR00138 91 LNNVEIVNGRAEDFQHEEQFDVITSRA-LAS-----LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAK 154 (181)
T ss_pred CCCeEEEecchhhccccCCccEEEehh-hhC-----HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHH
Confidence 6 7999999999875445899999986 321 1233444343332 2444444555544444433
No 24
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.63 E-value=6.5e-15 Score=122.62 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=96.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
++.+......++..+...+. ..+.++||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.++. +++++++|
T Consensus 176 ~Q~N~~~~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d 253 (353)
T TIGR02143 176 TQPNAAVNIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMS 253 (353)
T ss_pred ccCCHHHHHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 44555566666666655432 22347999999999999988876 46999999999999999999999988 89999999
Q ss_pred cccCcCC-----------------CcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHH
Q 028214 105 IRNLEWR-----------------GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE 156 (212)
Q Consensus 105 ~~~~~~~-----------------~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (212)
+.++... ..||+|+.||| +.+.....++.+.+ .+..+|++|+|.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP----R~G~~~~~l~~l~~-~~~ivYvsC~p~tla 317 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP----RAGLDPDTCKLVQA-YERILYISCNPETLK 317 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECCC----CCCCcHHHHHHHHc-CCcEEEEEcCHHHHH
Confidence 9874421 13899999999 46777677776666 457999999998754
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.62 E-value=1.5e-14 Score=117.04 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~ 124 (212)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|++.++. +++++++|+.+.....+||+|++||||.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 4579999999999999999976 345899999999999999999998876 6999999987654334899999999997
Q ss_pred CCCCCc--hHHHHHHHHhhcCceEEEEecCch---HHHHHHHHHhhcCCcceeEEEEEeecC
Q 028214 125 TRKKGV--DMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELRYDV 181 (212)
Q Consensus 125 ~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~~~~~~~~~~~~~~~ 181 (212)
...... ...+..+-.. ..+ -...+ ...+...+.+.|+ ++|.+++|.++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~----al~--gg~dGl~~~~~il~~a~~~L~-~gG~l~~e~g~~~ 255 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPEL----ALA--SGEDGLDLVRRILAEAADHLN-ENGVLVVEVGNSM 255 (284)
T ss_pred CccchhhCCHhhhcCHHH----Hhc--CCCcHHHHHHHHHHHHHHhcC-CCCEEEEEECcCH
Confidence 642211 0011000000 000 01111 2344555557777 8999999998744
No 26
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.62 E-value=7.2e-15 Score=111.18 Aligned_cols=94 Identities=39% Similarity=0.589 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC-CCe---------EEEEeCChHHHHHHHHHHhhcCC--
Q 028214 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQ---------VIAIDIDSDSLELASENAADLEL-- 96 (212)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~-~~~---------v~~~D~~~~~~~~a~~~~~~~~~-- 96 (212)
.+.++..++..+... ++..++|++||+|.+.++++..+ ... ++|.|+|+.+++.|++|++..+.
T Consensus 13 ~~~lA~~ll~la~~~----~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 13 RPTLAAALLNLAGWR----PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp -HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CHHHHHHHHHHhCCC----CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 466777777665553 77899999999999999998763 223 88999999999999999998887
Q ss_pred ceEEEEcccccCcC-CCcccEEEEcCCCCCC
Q 028214 97 DIDFVQCDIRNLEW-RGHVDTVVMNPPFGTR 126 (212)
Q Consensus 97 ~v~~~~~d~~~~~~-~~~~D~i~~nppy~~~ 126 (212)
.+.+.+.|+.+++. ...+|.|++||||...
T Consensus 89 ~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 89 YIDFIQWDARELPLPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp GEEEEE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred ceEEEecchhhcccccCCCCEEEECcchhhh
Confidence 68999999999994 4489999999999876
No 27
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.4e-14 Score=113.29 Aligned_cols=94 Identities=23% Similarity=0.352 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~nppy~ 124 (212)
++.+|||+|||||.+++.+++. +..+|+|+|+|+.|++.|++.....+. +++++++|++++|.++ +||+|.+.--++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 7899999999999999999976 567999999999999999999998765 6999999999999988 999999865444
Q ss_pred CCCCCchHHHHHHHHhhcC
Q 028214 125 TRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~ 143 (212)
... .....|++..++++
T Consensus 131 nv~--d~~~aL~E~~RVlK 147 (238)
T COG2226 131 NVT--DIDKALKEMYRVLK 147 (238)
T ss_pred cCC--CHHHHHHHHHHhhc
Confidence 332 34466777777765
No 28
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=3e-14 Score=116.47 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=88.4
Q ss_pred CEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|++.++. +++++++|+.+.....+||+|++||||...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 68999999999999999975 356899999999999999999998876 599999998765443489999999999764
Q ss_pred CCCchHHHHHHHHhhcCceEEEEecCch---HHHHHHHHHhhcCCcceeEEEEEeecC
Q 028214 127 KKGVDMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELRYDV 181 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~~~~~~~~~~~~~~~ 181 (212)
..- ..+......-+..... -...+ ...+...+.+.|+ ++|.++.+.++..
T Consensus 215 ~~~---~~l~~~~~~eP~~AL~-gg~dGl~~~~~i~~~a~~~L~-pgG~l~~E~g~~~ 267 (307)
T PRK11805 215 EDM---ADLPAEYRHEPELALA-AGDDGLDLVRRILAEAPDYLT-EDGVLVVEVGNSR 267 (307)
T ss_pred cch---hhcCHhhccCccceee-CCCchHHHHHHHHHHHHHhcC-CCCEEEEEECcCH
Confidence 221 1111111100111111 11112 2344555557777 8999999988753
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.60 E-value=1.8e-14 Score=120.10 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEccccc
Q 028214 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRN 107 (212)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~----~v~~~~~d~~~ 107 (212)
.++++..... ...+.+|||+|||+|.+++.+++.. ..+|+++|+|+.+++.|++|++.++. +++++.+|..+
T Consensus 216 GtrllL~~lp---~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 216 GARFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred HHHHHHHhCC---cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 3444444333 2334699999999999999999763 56999999999999999999987753 57899999876
Q ss_pred CcCCCcccEEEEcCCCCCC
Q 028214 108 LEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 108 ~~~~~~~D~i~~nppy~~~ 126 (212)
.....+||+|++|||||..
T Consensus 293 ~~~~~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 293 GVEPFRFNAVLCNPPFHQQ 311 (378)
T ss_pred cCCCCCEEEEEECcCcccC
Confidence 5444489999999999865
No 30
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.60 E-value=2.7e-14 Score=115.76 Aligned_cols=128 Identities=23% Similarity=0.332 Sum_probs=87.9
Q ss_pred CEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++|+..++. +++++++|+.+.....+||+|++||||...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 689999999999999999763 46899999999999999999998876 499999999875433389999999999865
Q ss_pred CCCchHHHHHHHHhhcCceEEEEecCc---hHHHHHHHHHhhcCCcceeEEEEEeecCC
Q 028214 127 KKGVDMDFLSMALKVASQAVYSLHKTS---TREHVKKAALRDFNASSAEVLCELRYDVP 182 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~~~~~~~~~~~~~~~~ 182 (212)
..... +.......+..... -... ....+...+.+.|+ ++|.++.|+++...
T Consensus 196 ~~~~~---~~~~~~~eP~~AL~-gg~dgl~~~~~ii~~a~~~L~-~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 196 EDLAD---LPNVVRFEPLLALV-GGDDGLNILRQIIELAPDYLK-PNGFLVCEIGNWQQ 249 (284)
T ss_pred chhhc---CCcccccCcHHHhc-CCCcHHHHHHHHHHHHHHhcc-CCCEEEEEECccHH
Confidence 22110 00000000000000 0111 23344455557777 88899999887543
No 31
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.3e-14 Score=114.34 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~npp 122 (212)
+...+.+|+|+|||.|.+++.+++.. ..+++-+|+|..+++.+++|+..|+. +..++..|..+-... +||+|++|||
T Consensus 155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPP 233 (300)
T COG2813 155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPP 233 (300)
T ss_pred CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCC
Confidence 33445599999999999999999874 57999999999999999999999987 447888888777666 9999999999
Q ss_pred CCCC
Q 028214 123 FGTR 126 (212)
Q Consensus 123 y~~~ 126 (212)
||.-
T Consensus 234 fh~G 237 (300)
T COG2813 234 FHAG 237 (300)
T ss_pred ccCC
Confidence 9964
No 32
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.60 E-value=7.4e-14 Score=119.51 Aligned_cols=128 Identities=20% Similarity=0.322 Sum_probs=97.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
++.++.....++..+...+...++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..++. +++++++|
T Consensus 270 ~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d 348 (431)
T TIGR00479 270 FQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGT 348 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 34455555555555555444456689999999999999999986 45899999999999999999998887 89999999
Q ss_pred cccCcC-----CCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEecCchHHHH
Q 028214 105 IRNLEW-----RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTREHV 158 (212)
Q Consensus 105 ~~~~~~-----~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 158 (212)
+.+... ..+||+|++|||. .+....+++.+.+... ..+|++|+|.+...-
T Consensus 349 ~~~~l~~~~~~~~~~D~vi~dPPr----~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard 404 (431)
T TIGR00479 349 LETVLPKQPWAGQIPDVLLLDPPR----KGCAAEVLRTIIELKPERIVYVSCNPATLARD 404 (431)
T ss_pred HHHHHHHHHhcCCCCCEEEECcCC----CCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHH
Confidence 976422 1269999999994 4556666666554433 588999998876443
No 33
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=2.6e-13 Score=103.22 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=90.1
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~nppy~~ 125 (212)
++.+|||+|||+|..++.+++. +..+|+++|+++.+++.|+++++.++. +++++++|+.++....+||+|+++.-
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 3789999999999999998864 456999999999999999999999887 69999999998776448999999741
Q ss_pred CCCCchHHHHHHHHhhcC-c-eEEEEecCchHHHHHHHHHhhcCCcceeEEEEEeecCCc
Q 028214 126 RKKGVDMDFLSMALKVAS-Q-AVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQ 183 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~ 183 (212)
.....+++.+.+..+ + .+++...+.....+...+ +.+ ++.+.....|++|.
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~-~~~---~~~~~~~~~~~~~~ 174 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELP-KAL---GGKVEEVIELTLPG 174 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHH-Hhc---CceEeeeEEEecCC
Confidence 223456666665554 2 333333444444444444 333 44555555566665
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=3.6e-14 Score=99.00 Aligned_cols=74 Identities=34% Similarity=0.514 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCcChHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccc-ccCcCCCcccEEEEcC
Q 028214 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRGHVDTVVMNP 121 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~-~~~~~~~~~D~i~~np 121 (212)
++.+|||+|||+|.+++.+++ .+..+|+|+|+|+.+++.|++++...+. +++++++|+ .......+||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 578999999999999999998 3566899999999999999999955444 899999999 4444445899999987
No 35
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.57 E-value=2.9e-14 Score=112.10 Aligned_cols=96 Identities=24% Similarity=0.316 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEcC
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNP 121 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~np 121 (212)
..++.+|||+|||||.++..+++. + ..+|+|+|+++.|++.|+++....+. +++++++|+++++.++ +||+|++.-
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 347889999999999999999875 3 35999999999999999999987766 8999999999999876 999999865
Q ss_pred CCCCCCCCchHHHHHHHHhhcC
Q 028214 122 PFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 122 py~~~~~~~~~~~l~~~~~~~~ 143 (212)
-++... .....+++..++++
T Consensus 125 glrn~~--d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 125 GLRNFP--DRERALREMYRVLK 144 (233)
T ss_dssp -GGG-S--SHHHHHHHHHHHEE
T ss_pred hHHhhC--CHHHHHHHHHHHcC
Confidence 554432 23456777777765
No 36
>PHA03411 putative methyltransferase; Provisional
Probab=99.56 E-value=2.7e-14 Score=113.30 Aligned_cols=94 Identities=17% Similarity=0.327 Sum_probs=76.6
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFV 101 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~ 101 (212)
..+|.||+.++..++. . .....+|||+|||+|.+++.++.. +..+|+++|+|+.+++.++++.. +++++
T Consensus 45 ~G~FfTP~~i~~~f~~---~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v 114 (279)
T PHA03411 45 SGAFFTPEGLAWDFTI---D---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWI 114 (279)
T ss_pred ceeEcCCHHHHHHHHh---c---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEE
Confidence 4679999998866431 1 124568999999999999888765 34689999999999999998753 58899
Q ss_pred EcccccCcCCCcccEEEEcCCCCCC
Q 028214 102 QCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 102 ~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
++|+.++....+||+|++||||++.
T Consensus 115 ~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 115 TSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred ECchhhhcccCCCcEEEEcCCcccc
Confidence 9999988755589999999999885
No 37
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-13 Score=110.85 Aligned_cols=95 Identities=32% Similarity=0.449 Sum_probs=78.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCc--eEEEEc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--v~~~~~ 103 (212)
|-|+.+-.+.+...++..+. .+++++||+|||||.+++.+++.|+.+|+|+|+||.+++.|+.|++.|++. ++.-..
T Consensus 141 FGTG~HpTT~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred cCCCCChhHHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 66777777777777777643 489999999999999999999999999999999999999999999999874 445555
Q ss_pred ccccCcCCCcccEEEEcC
Q 028214 104 DIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 104 d~~~~~~~~~~D~i~~np 121 (212)
+....+....||+|++|-
T Consensus 220 ~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 220 LLLEVPENGPFDVIVANI 237 (300)
T ss_pred cchhhcccCcccEEEehh
Confidence 555555445899999985
No 38
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.55 E-value=5.8e-14 Score=121.89 Aligned_cols=129 Identities=18% Similarity=0.299 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~ 124 (212)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..++. +++++++|+.+.....+||+|++||||.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3468999999999999988854 456999999999999999999988876 6899999987644334899999999998
Q ss_pred CCCCCc--hHHHHHHHHhhcCc-eEEEEecCchH---HHHHHHHHhhcCCcceeEEEEEeecCCc
Q 028214 125 TRKKGV--DMDFLSMALKVASQ-AVYSLHKTSTR---EHVKKAALRDFNASSAEVLCELRYDVPQ 183 (212)
Q Consensus 125 ~~~~~~--~~~~l~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~r~l~~~~~~~~~~~~~~~~~ 183 (212)
...... ....++ .-+. .++ -...+. ..+...+.+.|+ ++|.++.+.++..++
T Consensus 218 ~~~~~~~l~~~v~~----~EP~~AL~--gg~dGl~~~~~il~~a~~~L~-~gG~l~lEig~~q~~ 275 (506)
T PRK01544 218 SHSEKSEMAIETIN----YEPSIALF--AEEDGLQAYFIIAENAKQFLK-PNGKIILEIGFKQEE 275 (506)
T ss_pred CchhhhhcCchhhc----cCcHHHhc--CCccHHHHHHHHHHHHHHhcc-CCCEEEEEECCchHH
Confidence 753211 111111 0000 000 012222 234444556777 888888888875443
No 39
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=1.1e-13 Score=106.32 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
.++.+|||+|||+|..++.+++.+. +|+|+|+++.+++.+++++...+.++++...|+...+...+||+|+++.+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccC
Confidence 3567999999999999999998765 899999999999999999887776777888887665554589999999999876
Q ss_pred CCCchHHHHHHHHhhcC
Q 028214 127 KKGVDMDFLSMALKVAS 143 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~ 143 (212)
.......+++++.+.++
T Consensus 108 ~~~~~~~~l~~~~~~Lk 124 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTR 124 (195)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 54444456665555443
No 40
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.54 E-value=2.8e-13 Score=112.20 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
...+|||+|||+|.+++.+++.. ..+|+++|+|+.+++.+++|++.++...++..+|+.+.. ..+||+|++|||||..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~-~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI-KGRFDMIISNPPFHDG 274 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc-CCCccEEEECCCccCC
Confidence 34589999999999999999764 458999999999999999999998877778888887643 3489999999999864
No 41
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=5.3e-14 Score=111.91 Aligned_cols=79 Identities=33% Similarity=0.471 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~nppy~~ 125 (212)
.+.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++...+. +++++++|+.+.....+||+|++||||..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 4568999999999999999975 355999999999999999999998877 69999999987544458999999999985
Q ss_pred C
Q 028214 126 R 126 (212)
Q Consensus 126 ~ 126 (212)
.
T Consensus 167 ~ 167 (251)
T TIGR03534 167 E 167 (251)
T ss_pred h
Confidence 4
No 42
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.54 E-value=1e-13 Score=112.61 Aligned_cols=117 Identities=29% Similarity=0.389 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEc-ccc
Q 028214 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIR 106 (212)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~-d~~ 106 (212)
+|.++..+++.+-- .+|+.+||++||||++.+++...|. +++|+|++..|++-|+.|++..+. ...+... |+.
T Consensus 182 ~P~lAR~mVNLa~v----~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLARV----KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHhcc----ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccc
Confidence 35556555554443 4889999999999999999999977 899999999999999999999986 5666666 999
Q ss_pred cCcCCC-cccEEEEcCCCCCCCC-------CchHHHHHHHHhhcCceEEEEe
Q 028214 107 NLEWRG-HVDTVVMNPPFGTRKK-------GVDMDFLSMALKVASQAVYSLH 150 (212)
Q Consensus 107 ~~~~~~-~~D~i~~nppy~~~~~-------~~~~~~l~~~~~~~~~~~~~~~ 150 (212)
+++... ++|.|++||||..... .....+++.+...++.+.++++
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 999776 5999999999987732 1233556666666544333333
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.54 E-value=3.5e-13 Score=110.96 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=101.4
Q ss_pred hHHHHHHhccCCCCCCcccccccCCCChHHHHHHHHHH-HhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCCh
Q 028214 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTA-ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (212)
Q Consensus 3 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~ 81 (212)
++.++..+..+.+|.++.....++.........+.... ...+....+++|||+|||+|.++..++..+...|+|+|.++
T Consensus 76 ~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~ 155 (322)
T PRK15068 76 RKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ 155 (322)
T ss_pred HHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 46788999999999999888877776655554444333 33334567899999999999999999988877899999999
Q ss_pred HHHHHHHHHHhhc--CCceEEEEcccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 82 DSLELASENAADL--ELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 82 ~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
.++..++...... ..++.++.+|+.+++...+||+|++.-.++|.. .....++++.+.++
T Consensus 156 ~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H~~--dp~~~L~~l~~~Lk 217 (322)
T PRK15068 156 LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRR--SPLDHLKQLKDQLV 217 (322)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhccC--CHHHHHHHHHHhcC
Confidence 8886554433322 227899999999988755999999977666542 22345555554443
No 44
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.53 E-value=6.3e-13 Score=112.00 Aligned_cols=80 Identities=28% Similarity=0.391 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCcC-----CCcccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW-----RGHVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~-----~~~~D~i~~ 119 (212)
++++|||+|||+|.+++.++..+..+|+++|+|+.+++.|++|+..++. +++++++|+.++.. ..+||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 6789999999999999988876777999999999999999999999886 58999999988642 237999999
Q ss_pred cCCCCCCC
Q 028214 120 NPPFGTRK 127 (212)
Q Consensus 120 nppy~~~~ 127 (212)
||||....
T Consensus 300 DPP~f~~~ 307 (396)
T PRK15128 300 DPPKFVEN 307 (396)
T ss_pred CCCCCCCC
Confidence 99997654
No 45
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.53 E-value=8e-14 Score=104.65 Aligned_cols=79 Identities=23% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy 123 (212)
...+++++||+|||+|.++..+++. ..+|+++|+|+.+++.+++++...+ +++++++|+.+++... +||.|++||||
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~~-~v~ii~~D~~~~~~~~~~~d~vi~n~Py 87 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAAD-NLTVIHGDALKFDLPKLQPYKVVGNLPY 87 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccCC-CEEEEECchhcCCccccCCCEEEECCCc
Confidence 3446789999999999999999987 5689999999999999999986532 7999999999987665 69999999999
Q ss_pred CC
Q 028214 124 GT 125 (212)
Q Consensus 124 ~~ 125 (212)
+.
T Consensus 88 ~~ 89 (169)
T smart00650 88 NI 89 (169)
T ss_pred cc
Confidence 85
No 46
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=2e-13 Score=104.93 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~nppy~~ 125 (212)
.++.+|||+|||+|..++.+++.+. +|+|+|+|+.+++.++++....+. ++++..+|+.+.+...+||+|+++..+++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 3668999999999999999998755 899999999999999999888776 68899999988766568999999988776
Q ss_pred CCCCchHHHHHHHHhhcC
Q 028214 126 RKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~ 143 (212)
........+++++.+.++
T Consensus 108 ~~~~~~~~~l~~i~~~Lk 125 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTK 125 (197)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 544444455665555543
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=2.7e-13 Score=99.96 Aligned_cols=94 Identities=29% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCcChHHHHHH-Hc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC--CCcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAAT-LL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~-~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~npp 122 (212)
++.+|||+|||+|.++..++ .. +..+++|+|+|+.+++.|+++++..+. +++++++|+.+++. +.+||+|+++++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 67899999999999999999 43 356899999999999999999998887 79999999999763 258999999999
Q ss_pred CCCCCCCchHHHHHHHHhhcC
Q 028214 123 FGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~ 143 (212)
+++.. .....++++.+..+
T Consensus 83 l~~~~--~~~~~l~~~~~~lk 101 (152)
T PF13847_consen 83 LHHFP--DPEKVLKNIIRLLK 101 (152)
T ss_dssp GGGTS--HHHHHHHHHHHHEE
T ss_pred hhhcc--CHHHHHHHHHHHcC
Confidence 86543 22345666665554
No 48
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.6e-13 Score=112.89 Aligned_cols=94 Identities=31% Similarity=0.445 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCC------------------------------------
Q 028214 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD------------------------------------ 72 (212)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~------------------------------------ 72 (212)
.+.++++|+..+.+. ++..++|+.||+|.+.+++|..+..
T Consensus 176 ketLAaAil~lagw~----~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 176 KETLAAAILLLAGWK----PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred hHHHHHHHHHHcCCC----CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 467788888777765 5679999999999999999977521
Q ss_pred ----eEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC-CcccEEEEcCCCCCC
Q 028214 73 ----QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-GHVDTVVMNPPFGTR 126 (212)
Q Consensus 73 ----~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~~D~i~~nppy~~~ 126 (212)
.++|+|+|+.+++.|+.|++..|+ .|+|.++|+.++... ..+|+|++||||...
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR 312 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER 312 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh
Confidence 377999999999999999999998 699999999999877 699999999999877
No 49
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.52 E-value=7e-13 Score=105.55 Aligned_cols=76 Identities=32% Similarity=0.427 Sum_probs=64.1
Q ss_pred CCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---CCcccEEEEcCCCC
Q 028214 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RGHVDTVVMNPPFG 124 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~nppy~ 124 (212)
+.++||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|++.++ ++++++|+.+... ..+||+|++||||.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999998864 34589999999999999999998875 5789999876543 23799999999997
Q ss_pred CC
Q 028214 125 TR 126 (212)
Q Consensus 125 ~~ 126 (212)
..
T Consensus 165 ~~ 166 (251)
T TIGR03704 165 PT 166 (251)
T ss_pred Cc
Confidence 54
No 50
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.9e-12 Score=95.39 Aligned_cols=83 Identities=25% Similarity=0.413 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~npp 122 (212)
.......++|+|||+|.++.++++. +.....++|+||.+++...+.++.++.++++++.|+.+-....+.|++++|||
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 4445778999999999999999976 34578899999999999999999999899999999998877789999999999
Q ss_pred CCCCC
Q 028214 123 FGTRK 127 (212)
Q Consensus 123 y~~~~ 127 (212)
|....
T Consensus 120 YVpt~ 124 (209)
T KOG3191|consen 120 YVPTS 124 (209)
T ss_pred cCcCC
Confidence 98763
No 51
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=1.1e-13 Score=111.80 Aligned_cols=96 Identities=35% Similarity=0.427 Sum_probs=73.6
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcc
Q 028214 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104 (212)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d 104 (212)
.|-|+.+-.+++...++..+ ..++++|||+|||||++++.+++.|+.+|+|+|+|+.+++.|++|+..|++...+....
T Consensus 139 AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~ 217 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL 217 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC
T ss_pred cccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 37888888888888888774 45788999999999999999999999999999999999999999999999832332222
Q ss_pred cccCcCCCcccEEEEcCC
Q 028214 105 IRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 105 ~~~~~~~~~~D~i~~npp 122 (212)
..+... .+||+|++|--
T Consensus 218 ~~~~~~-~~~dlvvANI~ 234 (295)
T PF06325_consen 218 SEDLVE-GKFDLVVANIL 234 (295)
T ss_dssp TSCTCC-S-EEEEEEES-
T ss_pred eccccc-ccCCEEEECCC
Confidence 223222 48999999964
No 52
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=6.9e-13 Score=106.97 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHh-hcCCceEEEEcccccCcCCCcccEEEEcCCC
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
..++.+|||+|||+|.+++.++... ..+++++|+++.+++.|++|+. ....+++++++|+.+.....+||+|++||||
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 3467799999999999999999763 5689999999999999999988 2222799999998765443489999999999
Q ss_pred CCCCCCchHHHHHHHHhhcCc-eEEEEecCc---hHHHHHHHHHhhcCCcceeEEEEEeecC
Q 028214 124 GTRKKGVDMDFLSMALKVASQ-AVYSLHKTS---TREHVKKAALRDFNASSAEVLCELRYDV 181 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~r~l~~~~~~~~~~~~~~~ 181 (212)
....... ....+....... .++ -... ....+...+.+.|+ ++|.++.+.++..
T Consensus 186 ~~~~~~~--~~~~~v~~~ep~~al~--~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~e~g~~~ 242 (275)
T PRK09328 186 IPEADIH--LLQPEVRDHEPHLALF--GGEDGLDFYRRIIEQAPRYLK-PGGWLLLEIGYDQ 242 (275)
T ss_pred CCcchhh--hCCchhhhcCCchhhc--CCCCHHHHHHHHHHHHHHhcc-cCCEEEEEECchH
Confidence 7542110 000010000000 111 0111 12334444547777 8888888887644
No 53
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.49 E-value=3.1e-13 Score=108.89 Aligned_cols=113 Identities=22% Similarity=0.317 Sum_probs=85.4
Q ss_pred HHHHHhccCCCCCCccccccc-CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHH
Q 028214 5 QLESVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83 (212)
Q Consensus 5 ~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~ 83 (212)
++.+++.... . .+...+.| |.+.+.+...++..+ ...++++|||+|||+|.++..++..+. +|+|+|+|+.+
T Consensus 4 ~~~~~l~~~~-~-~~~k~~gq~fl~~~~i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~ 76 (272)
T PRK00274 4 RTRELLERYG-H-RAKKSLGQNFLIDENILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDL 76 (272)
T ss_pred hHHHHHHHcC-C-CCCcccCcCcCCCHHHHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHH
Confidence 4455554332 2 33445555 777777776666543 234778999999999999999998755 89999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCC
Q 028214 84 LELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 84 ~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~ 126 (212)
++.++++... .+++++++|+.+++... .+|.|++||||+..
T Consensus 77 ~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~is 118 (272)
T PRK00274 77 APILAETFAE--DNLTIIEGDALKVDLSELQPLKVVANLPYNIT 118 (272)
T ss_pred HHHHHHhhcc--CceEEEEChhhcCCHHHcCcceEEEeCCccch
Confidence 9999988754 37999999999886553 26999999999753
No 54
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.47 E-value=9.3e-13 Score=118.64 Aligned_cols=79 Identities=25% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCcC--CCcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~--~~~~D~i~~npp 122 (212)
++++|||+|||+|.+++.+++.|+.+|+++|+|+.+++.|++|++.++. +++++++|+.++.. ..+||+|++|||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 5789999999999999999998777899999999999999999999876 58999999987643 238999999999
Q ss_pred CCCC
Q 028214 123 FGTR 126 (212)
Q Consensus 123 y~~~ 126 (212)
|...
T Consensus 618 ~f~~ 621 (702)
T PRK11783 618 TFSN 621 (702)
T ss_pred CCCC
Confidence 9765
No 55
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=5.1e-13 Score=106.75 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=83.1
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEc
Q 028214 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQC 103 (212)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~ 103 (212)
.|.................+...++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++ +++++++
T Consensus 6 ~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~ 79 (255)
T PRK14103 6 VYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTG 79 (255)
T ss_pred HHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEc
Confidence 344444444444555555555567889999999999999999876 345899999999999999764 4789999
Q ss_pred ccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 104 DIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 104 d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
|+.++....+||+|+++.++++..+ ....++++.+.++
T Consensus 80 d~~~~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~Lk 117 (255)
T PRK14103 80 DVRDWKPKPDTDVVVSNAALQWVPE--HADLLVRWVDELA 117 (255)
T ss_pred ChhhCCCCCCceEEEEehhhhhCCC--HHHHHHHHHHhCC
Confidence 9988764459999999999988642 3456666665554
No 56
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.46 E-value=6.8e-13 Score=106.16 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=79.4
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEE
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~ 102 (212)
.+.|-..+.+...++..+. ..++++|||+|||+|.++..+++.+ .+|+++|+|+.+++.+++++...+ ++++++
T Consensus 8 GQnfl~d~~~~~~iv~~~~----~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~-~v~ii~ 81 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE----DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAG-NVEIIE 81 (258)
T ss_pred CccccCCHHHHHHHHHhcC----CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCC-CEEEEE
Confidence 3447777777777766543 3477899999999999999999874 589999999999999998886522 799999
Q ss_pred cccccCcCCCcccEEEEcCCCCCC
Q 028214 103 CDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 103 ~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
+|+.+++.+ .||.|++||||+..
T Consensus 82 ~D~~~~~~~-~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 82 GDALKVDLP-EFNKVVSNLPYQIS 104 (258)
T ss_pred eccccCCch-hceEEEEcCCcccC
Confidence 999987654 68999999999863
No 57
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.46 E-value=6e-12 Score=98.08 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=67.0
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC-CcccEEEEc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR-GHVDTVVMN 120 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~n 120 (212)
...++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++|+...+. +++++++|..+.... ..||+|+++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 44578999999999999999998763 23699999999999999999998887 799999999875443 389999998
Q ss_pred CCC
Q 028214 121 PPF 123 (212)
Q Consensus 121 ppy 123 (212)
++.
T Consensus 154 ~~~ 156 (215)
T TIGR00080 154 AAG 156 (215)
T ss_pred CCc
Confidence 763
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=2e-12 Score=103.00 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccC
Q 028214 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 108 (212)
......+......+...+|++|||+|||.|.+++.+|+....+|+|+++|+++.+.+++.+...|. +++++..|..++
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 445556677777777789999999999999999999987556999999999999999999999988 699999999998
Q ss_pred cCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 109 EWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 109 ~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
... ||.|++=-.|.+........+++.+.+.++
T Consensus 135 ~e~--fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 135 EEP--FDRIVSVGMFEHVGKENYDDFFKKVYALLK 167 (283)
T ss_pred ccc--cceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence 764 999999999999877777888888887764
No 59
>PRK14968 putative methyltransferase; Provisional
Probab=99.46 E-value=9.2e-12 Score=94.66 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-c--eEEEEcccccCcCCCcccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~--v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
.+++++||+|||+|.++..++.. ..+++++|+++.+++.+++++..++. + +.+.++|+.+.....+||+|++||||
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 47789999999999999999987 46999999999999999999988776 2 88999998775544489999999999
Q ss_pred CCC
Q 028214 124 GTR 126 (212)
Q Consensus 124 ~~~ 126 (212)
...
T Consensus 101 ~~~ 103 (188)
T PRK14968 101 LPT 103 (188)
T ss_pred CCC
Confidence 763
No 60
>PLN02672 methionine S-methyltransferase
Probab=99.45 E-value=7.7e-13 Score=121.99 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=99.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-----------------ceEEEEcccccCc
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-----------------DIDFVQCDIRNLE 109 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------------~v~~~~~d~~~~~ 109 (212)
++.+|+|+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+..++. +++++++|+.+..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4568999999999999999975 346999999999999999999987531 5899999998765
Q ss_pred CCC--cccEEEEcCCCCCCCCCch-HHHHHHH------HhhcC-ceEEEEe-cCch---HHHHHHHHHhhcCCcceeEEE
Q 028214 110 WRG--HVDTVVMNPPFGTRKKGVD-MDFLSMA------LKVAS-QAVYSLH-KTST---REHVKKAALRDFNASSAEVLC 175 (212)
Q Consensus 110 ~~~--~~D~i~~nppy~~~~~~~~-~~~l~~~------~~~~~-~~~~~~~-~~~~---~~~~~~~~~r~l~~~~~~~~~ 175 (212)
... +||+||+||||........ ...+.+. ....+ ...+-.. ...+ ...+...+.+.|+ ++|.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence 432 6999999999986532111 1111100 00000 0111100 1222 2444555557888 9999999
Q ss_pred EEeecCCcccc--cccceeeeEEEEEEEEE
Q 028214 176 ELRYDVPQLYK--FHKKKEVDIAVDLWRFV 203 (212)
Q Consensus 176 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 203 (212)
|+|+...+... +..+ .+.....+|+..
T Consensus 277 EiG~~q~~~v~~~l~~~-~gf~~~~~~~~~ 305 (1082)
T PLN02672 277 NMGGRPGQAVCERLFER-RGFRITKLWQTK 305 (1082)
T ss_pred EECccHHHHHHHHHHHH-CCCCeeEEeeeh
Confidence 99987755442 3222 233334466544
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=1.8e-11 Score=93.35 Aligned_cols=91 Identities=25% Similarity=0.325 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~nppy~ 124 (212)
.++.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|++.++. +++++++|... ....+||+|+++....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCCcc
Confidence 377899999999999999999763 46899999999999999999988765 78999999753 2234899999975422
Q ss_pred CCCCCchHHHHHHHHhhcC
Q 028214 125 TRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~ 143 (212)
....+++.+.+.++
T Consensus 109 -----~~~~~l~~~~~~Lk 122 (187)
T PRK08287 109 -----NLTAIIDWSLAHLH 122 (187)
T ss_pred -----CHHHHHHHHHHhcC
Confidence 22345555555544
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.45 E-value=2.9e-12 Score=97.15 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
.++.++||+|||.|..++.+|+.|. .|+++|+|+.+++.+++.++..++.++..+.|+.+...+..||+|++.-.|+..
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccC
Confidence 4678999999999999999999988 899999999999999999888888899999999988877799999998777766
Q ss_pred CCCchHHHHHHHHhhc
Q 028214 127 KKGVDMDFLSMALKVA 142 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~ 142 (212)
........++......
T Consensus 108 ~~~~~~~i~~~m~~~~ 123 (192)
T PF03848_consen 108 QRELRPQIIENMKAAT 123 (192)
T ss_dssp -GGGHHHHHHHHHHTE
T ss_pred CHHHHHHHHHHHHhhc
Confidence 5555445555544433
No 63
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.45 E-value=6.5e-13 Score=102.58 Aligned_cols=94 Identities=28% Similarity=0.420 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-CcccEEEEcCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMNPPFGT 125 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~nppy~~ 125 (212)
.++.+|||+|||-|.++..+|+.|. .|+|+|+++.+++.|+..+...+++++..+..++++... .+||+|+|.=...|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5889999999999999999999985 999999999999999999999998888999999988776 49999999888776
Q ss_pred CCCCchHHHHHHHHhhcC
Q 028214 126 RKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~ 143 (212)
..+.. .+++.+.+..+
T Consensus 137 v~dp~--~~~~~c~~lvk 152 (243)
T COG2227 137 VPDPE--SFLRACAKLVK 152 (243)
T ss_pred cCCHH--HHHHHHHHHcC
Confidence 64332 25555555544
No 64
>PLN02244 tocopherol O-methyltransferase
Probab=99.45 E-value=4.8e-12 Score=105.08 Aligned_cols=108 Identities=21% Similarity=0.185 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCC-----CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccc
Q 028214 34 SRMLYTAENSFGD-----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (212)
Q Consensus 34 ~~~l~~~~~~~~~-----~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (212)
..++......... .++++|||+|||+|.++..+++....+|+|+|+++.+++.++++.+..+. +++++++|+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 3455555544333 46789999999999999999976445999999999999999999887765 6999999999
Q ss_pred cCcCCC-cccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 107 NLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 107 ~~~~~~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
+.+.++ +||+|++.-.+++..+ ...+++++.+.++
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLk 214 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPD--KRKFVQELARVAA 214 (340)
T ss_pred cCCCCCCCccEEEECCchhccCC--HHHHHHHHHHHcC
Confidence 887665 8999999877766532 3456666666654
No 65
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.6e-12 Score=105.69 Aligned_cols=95 Identities=23% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRK 127 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~ 127 (212)
++.+|||+|||+|..++.+++.+. +|+|+|+|+.+++.+++++...+.++++...|+.......+||+|+++..+++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 556999999999999999998765 8999999999999999999888778888999987765555899999998887765
Q ss_pred CCchHHHHHHHHhhcC
Q 028214 128 KGVDMDFLSMALKVAS 143 (212)
Q Consensus 128 ~~~~~~~l~~~~~~~~ 143 (212)
......+++++.+.++
T Consensus 199 ~~~~~~~l~~~~~~Lk 214 (287)
T PRK12335 199 RERIPAIIKNMQEHTN 214 (287)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4444456666555543
No 66
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.44 E-value=1.2e-12 Score=106.25 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=81.1
Q ss_pred cccccc-CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--
Q 028214 20 KVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-- 96 (212)
Q Consensus 20 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-- 96 (212)
...+.| |-..+.+...++..+. ..++++|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...+.
T Consensus 11 kk~~GQnFL~d~~i~~~Iv~~~~----~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~ 85 (294)
T PTZ00338 11 NKKFGQHILKNPLVLDKIVEKAA----IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLAS 85 (294)
T ss_pred CCCCCccccCCHHHHHHHHHhcC----CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 344444 5566777766665443 3477899999999999999999864 5899999999999999999876552
Q ss_pred ceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 97 DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 97 ~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
+++++++|+.+...+ .||.|++|+||+..
T Consensus 86 ~v~ii~~Dal~~~~~-~~d~VvaNlPY~Is 114 (294)
T PTZ00338 86 KLEVIEGDALKTEFP-YFDVCVANVPYQIS 114 (294)
T ss_pred cEEEEECCHhhhccc-ccCEEEecCCcccC
Confidence 799999999887654 79999999999865
No 67
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=1.7e-12 Score=103.40 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (212)
+...+...+...+...+..+|||+|||+|.++..++..+ .+|+++|+++.+++.++++.. ...++++|+.+++..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcCC
Confidence 344444444444444456899999999999999888765 589999999999999988754 346789999888765
Q ss_pred C-cccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 112 G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 112 ~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
+ +||+|+++.++++..+ ....+.++.+.++
T Consensus 101 ~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk 131 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGN--LSTALRELYRVVR 131 (251)
T ss_pred CCcEEEEEECchhhhcCC--HHHHHHHHHHHcC
Confidence 5 8999999999887532 3456666666554
No 68
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=4.8e-12 Score=99.58 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMN 120 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~n 120 (212)
...++++|||+|||+|..+..+++. + ..+|+|+|+++.+++.++++....+. +++++++|+.+.+... +||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 3346789999999999999999865 3 35899999999999999999877665 7899999998876544 89999998
Q ss_pred CCCCCCCCCchHHHHHHHHhhcC
Q 028214 121 PPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
.++++.. .....++++.+.++
T Consensus 122 ~~l~~~~--~~~~~l~~~~~~Lk 142 (231)
T TIGR02752 122 FGLRNVP--DYMQVLREMYRVVK 142 (231)
T ss_pred cccccCC--CHHHHHHHHHHHcC
Confidence 8876643 23456777666655
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=3.6e-13 Score=92.45 Aligned_cols=91 Identities=26% Similarity=0.381 Sum_probs=71.6
Q ss_pred EEEEcCCcChHHHHHHHcC----CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEE-cCCCCC
Q 028214 52 VADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVM-NPPFGT 125 (212)
Q Consensus 52 vlDlg~G~G~~~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~-nppy~~ 125 (212)
|||+|||+|..+..++... ..+++|+|+|+.+++.++++....+.+++++++|+.+++... +||+|++ ..++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999763 269999999999999999999887778999999999987655 9999999 565766
Q ss_pred CCCCchHHHHHHHHhhc
Q 028214 126 RKKGVDMDFLSMALKVA 142 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~ 142 (212)
..+......++++.+..
T Consensus 81 ~~~~~~~~ll~~~~~~l 97 (101)
T PF13649_consen 81 LSPEELEALLRRIARLL 97 (101)
T ss_dssp SSHHHHHHHHHHHHHTE
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 65555556666665543
No 70
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.43 E-value=6.4e-12 Score=92.76 Aligned_cols=112 Identities=32% Similarity=0.395 Sum_probs=77.0
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCc----ccEEEEcCCC
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGH----VDTVVMNPPF 123 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~----~D~i~~nppy 123 (212)
+.|+|++||.|.-++.+|+. ..+|+++|+|+..++.|+.|++-.|+ +++++++|+.+...... +|+|+++||.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 37999999999999999997 55899999999999999999999997 89999999998765432 8999999999
Q ss_pred CCCCC-------------C-chHHHHHHHHhhcCceEEEEecCchHHHHHHHH
Q 028214 124 GTRKK-------------G-VDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 124 ~~~~~-------------~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
.-... . .....++.+.+.....++.+-.......+.+..
T Consensus 80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT-
T ss_pred CCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHh
Confidence 75411 1 112455566666666677666666676665554
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=1.3e-11 Score=96.00 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 028214 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (212)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d 104 (212)
+.+.+...++..+ ...++++|||+|||+|..+..+++. + ..+|+++|+++++++.++++++..+. +++++++|
T Consensus 60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 3445554444433 3357899999999999999988865 2 25899999999999999999998877 79999999
Q ss_pred cccCcCCC-cccEEEEcCC
Q 028214 105 IRNLEWRG-HVDTVVMNPP 122 (212)
Q Consensus 105 ~~~~~~~~-~~D~i~~npp 122 (212)
........ .||+|+++..
T Consensus 136 ~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred cccCCCcCCCcCEEEECCC
Confidence 87654433 8999998643
No 72
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.42 E-value=2.7e-12 Score=86.37 Aligned_cols=86 Identities=28% Similarity=0.375 Sum_probs=67.0
Q ss_pred EEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCCCCCch
Q 028214 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVD 131 (212)
Q Consensus 53 lDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~~~~~~ 131 (212)
||+|||+|..+..+++.+..+++++|+++.+++.++++.... ++.+.++|+.+++.++ +||+|+++-.+++. ...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--CchheeehHHhCccccccccccccccceeec--cCH
Confidence 799999999999999886669999999999999999998765 4679999999998776 99999998887765 333
Q ss_pred HHHHHHHHhhc
Q 028214 132 MDFLSMALKVA 142 (212)
Q Consensus 132 ~~~l~~~~~~~ 142 (212)
...++++.+.+
T Consensus 77 ~~~l~e~~rvL 87 (95)
T PF08241_consen 77 EAALREIYRVL 87 (95)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHHc
Confidence 34555544443
No 73
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=3.5e-12 Score=98.50 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.. ++++.++|+.+.....+||+|+++-.+++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFDPFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccCCCCCCCEEEEEECChhhhC
Confidence 5678999999999999999875 45689999999999999998753 467889998883233389999999998877
Q ss_pred CCCchHHHHHHHHhhcCceEE
Q 028214 127 KKGVDMDFLSMALKVASQAVY 147 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~ 147 (212)
.+......++++.+..+..++
T Consensus 119 ~p~~~~~~l~el~r~~~~~v~ 139 (204)
T TIGR03587 119 NPDNLPTAYRELYRCSNRYIL 139 (204)
T ss_pred CHHHHHHHHHHHHhhcCcEEE
Confidence 555556788888887764333
No 74
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.42 E-value=2.4e-12 Score=105.58 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~nppy 123 (212)
.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.+....+. +++++++|+.+++... +||+|++.-.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4667999999999999999998654 899999999999999988765543 7899999999887554 89999998887
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
++..+ ...+++++.+.++
T Consensus 209 eHv~d--~~~~L~~l~r~Lk 226 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTI 226 (322)
T ss_pred HhcCC--HHHHHHHHHHHcC
Confidence 77643 2345555555543
No 75
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.42 E-value=1.6e-11 Score=100.52 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc------CCceEEEEcccccCcCCCcccEEEEc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRNLEWRGHVDTVVMN 120 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~D~i~~n 120 (212)
.++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.++++.+.. ..++++..+|+.++ ..+||+|++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 4678999999999999999998754 8999999999999999998764 12578889998665 2489999988
Q ss_pred CCCCCCCCCchHHHHHHHHhhcCceEEEEecCchH
Q 028214 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR 155 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (212)
-.+++.........++...+..++.+++.+.+.+.
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~ 254 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAEKRLIISFAPKTL 254 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcch
Confidence 77765544333355666655566677877776643
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.42 E-value=9e-12 Score=101.22 Aligned_cols=95 Identities=32% Similarity=0.447 Sum_probs=73.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~ 103 (212)
|.|+.+-.+.+.......+ ..++++|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|++|+..++. .+.+..+
T Consensus 138 FgtG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~ 216 (288)
T TIGR00406 138 FGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI 216 (288)
T ss_pred ccCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence 5555555555555555442 346789999999999999999988777999999999999999999998876 4666777
Q ss_pred ccccCcCCCcccEEEEcCC
Q 028214 104 DIRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 104 d~~~~~~~~~~D~i~~npp 122 (212)
+..... ..+||+|++|..
T Consensus 217 ~~~~~~-~~~fDlVvan~~ 234 (288)
T TIGR00406 217 YLEQPI-EGKADVIVANIL 234 (288)
T ss_pred cccccc-CCCceEEEEecC
Confidence 643332 338999999975
No 77
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.41 E-value=1.7e-12 Score=106.02 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCcChHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHhhc-CC--ceEEEE-cccccCc-----CCCcccEE
Q 028214 48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQ-CDIRNLE-----WRGHVDTV 117 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~v~~~~-~d~~~~~-----~~~~~D~i 117 (212)
.+.++||+|||+|.+...++ +....+++|+|+|+.+++.|++|++.+ ++ ++++++ .|..++. ...+||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 45799999999997766665 444569999999999999999999998 56 577754 3333322 12389999
Q ss_pred EEcCCCCCCCC
Q 028214 118 VMNPPFGTRKK 128 (212)
Q Consensus 118 ~~nppy~~~~~ 128 (212)
+|||||+....
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99999998743
No 78
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=2.1e-11 Score=91.10 Aligned_cols=122 Identities=22% Similarity=0.231 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccc
Q 028214 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (212)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (212)
|.+.+..-.+..+ ...++++++|+|||||+++++++.. +..+|+++|.++++++..++|.+..+. +++++.+|+
T Consensus 18 TK~EIRal~ls~L----~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A 93 (187)
T COG2242 18 TKEEIRALTLSKL----RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA 93 (187)
T ss_pred cHHHHHHHHHHhh----CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence 4455554444433 3458999999999999999999955 467999999999999999999999998 899999999
Q ss_pred ccCcCCC-cccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHH
Q 028214 106 RNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVK 159 (212)
Q Consensus 106 ~~~~~~~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (212)
-+..... +||.|+..-- +.....++.+...++.+.-++.+..+.+-..
T Consensus 94 p~~L~~~~~~daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 94 PEALPDLPSPDAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred hHhhcCCCCCCEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 8876654 7999998743 3444566666655443333444444444333
No 79
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=1.1e-11 Score=96.93 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~ 124 (212)
.++.++||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....+. ++++.++|+.+.+ .+||+|++.-.++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHH
Confidence 4678999999999999999998754 899999999999999999887664 7899999998876 5899999865554
Q ss_pred CCCCCchHHHHHHHHhhcCceEEEEecCchH
Q 028214 125 TRKKGVDMDFLSMALKVASQAVYSLHKTSTR 155 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (212)
+.........++++.+..++.+++.+.+.+.
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~ 161 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTA 161 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCch
Confidence 4433233456677766666667777766553
No 80
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=3.9e-12 Score=101.73 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=76.7
Q ss_pred hhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEc
Q 028214 42 NSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMN 120 (212)
Q Consensus 42 ~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~n 120 (212)
..+...++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++.. +++++.+|+.++....+||+|+++
T Consensus 25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~~~~fD~v~~~ 100 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQPPQALDLIFAN 100 (258)
T ss_pred hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCCCCCccEEEEc
Confidence 3334457789999999999999999865 45699999999999999998753 578999999877655599999999
Q ss_pred CCCCCCCCCchHHHHHHHHhhcC
Q 028214 121 PPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
..+++..+ ....++++.+.++
T Consensus 101 ~~l~~~~d--~~~~l~~~~~~Lk 121 (258)
T PRK01683 101 ASLQWLPD--HLELFPRLVSLLA 121 (258)
T ss_pred cChhhCCC--HHHHHHHHHHhcC
Confidence 99987643 3456777766655
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=1.6e-11 Score=97.81 Aligned_cols=105 Identities=31% Similarity=0.441 Sum_probs=72.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEc
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~ 103 (212)
|.++..-.+.+....... ...++++|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|++|++.++. .+.+..+
T Consensus 98 fgtg~h~tt~~~l~~l~~-~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~ 176 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEK-LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176 (250)
T ss_pred cCCCCCHHHHHHHHHHHh-hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence 445544444444444443 2347889999999999999988887776799999999999999999998875 2343333
Q ss_pred ccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 104 DIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 104 d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
|. +||+|++|... ......+.++.+..+
T Consensus 177 ~~-------~fD~Vvani~~-----~~~~~l~~~~~~~Lk 204 (250)
T PRK00517 177 DL-------KADVIVANILA-----NPLLELAPDLARLLK 204 (250)
T ss_pred CC-------CcCEEEEcCcH-----HHHHHHHHHHHHhcC
Confidence 22 69999998642 122345555555544
No 82
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=6e-12 Score=100.57 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcC--CCcccEEEEcCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~--~~~~D~i~~npp 122 (212)
.++.+|||+|||+|.++..++..+. +|+++|+++.+++.|+++....+. +++++++|+.++.. ..+||+|+++.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3567999999999999999998754 899999999999999999988775 68999999987642 238999999988
Q ss_pred CCCCCCCchHHHHHHHHhhcC
Q 028214 123 FGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~ 143 (212)
+++..+. ...++++.+..+
T Consensus 122 l~~~~~~--~~~l~~~~~~Lk 140 (255)
T PRK11036 122 LEWVADP--KSVLQTLWSVLR 140 (255)
T ss_pred HHhhCCH--HHHHHHHHHHcC
Confidence 8765322 345666555544
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=3.1e-11 Score=93.36 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVM 119 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~ 119 (212)
...++++|||+|||+|..+..+++. + ..+|+++|+++.+++.|++|+..++. +++++++|+.+..... +||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 3347789999999999999888864 2 35899999999999999999988876 5899999998755433 8999999
Q ss_pred cCCCC
Q 028214 120 NPPFG 124 (212)
Q Consensus 120 nppy~ 124 (212)
+.++.
T Consensus 149 ~~~~~ 153 (205)
T PRK13944 149 TAAAS 153 (205)
T ss_pred ccCcc
Confidence 86643
No 84
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=5.5e-12 Score=98.71 Aligned_cols=98 Identities=26% Similarity=0.392 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEc---
Q 028214 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQC--- 103 (212)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~--- 103 (212)
+.++...+...... .-.++..++|+|||+|.+++.++.. +...|+|+|.++.++..|.+|++.++. .+.+++-
T Consensus 131 EE~V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 44444444443332 4446678999999999999998854 567999999999999999999998876 5666644
Q ss_pred -ccccCcC-C-CcccEEEEcCCCCCCCC
Q 028214 104 -DIRNLEW-R-GHVDTVVMNPPFGTRKK 128 (212)
Q Consensus 104 -d~~~~~~-~-~~~D~i~~nppy~~~~~ 128 (212)
|..+... . ..+|++++||||...++
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred cccccccccccCceeEEecCCCcccccc
Confidence 4433221 1 28999999999987643
No 85
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=1.2e-11 Score=95.54 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccc-ccCc--C-CCcccEEEEcC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI-RNLE--W-RGHVDTVVMNP 121 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~-~~~~--~-~~~~D~i~~np 121 (212)
.+.+|||+|||+|..+..++.. +..+++|+|+++.+++.|++++..++. +++++++|+ ..++ . ..+||.|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999999865 345899999999999999999988776 799999999 5544 2 23899999986
Q ss_pred CCCCCC------CCchHHHHHHHHhhcC
Q 028214 122 PFGTRK------KGVDMDFLSMALKVAS 143 (212)
Q Consensus 122 py~~~~------~~~~~~~l~~~~~~~~ 143 (212)
|..+.. ......+++++.+..+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lk 147 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLK 147 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcC
Confidence 543221 1123556777776654
No 86
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=1.2e-11 Score=98.28 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~npp 122 (212)
++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|++++...+. +++++++|+.+.+.+ .+|+|+++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~~ 134 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNFT 134 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhhH
Confidence 6789999999999998888762 456999999999999999999987665 799999999987765 6999999988
Q ss_pred CCCCCCCchHHHHHHHHhhcC
Q 028214 123 FGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~ 143 (212)
+++.........++++.+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lk 155 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLN 155 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcC
Confidence 877654444556666666654
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.37 E-value=6.3e-11 Score=92.12 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC-CcccEEEEcCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR-GHVDTVVMNPP 122 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~npp 122 (212)
...++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..+. ++++.++|..+.... ..||+|+++.+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 34577899999999999998888764 4899999999999999999988877 799999998664333 48999999876
Q ss_pred C
Q 028214 123 F 123 (212)
Q Consensus 123 y 123 (212)
+
T Consensus 154 ~ 154 (212)
T PRK00312 154 A 154 (212)
T ss_pred c
Confidence 4
No 88
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=101.26 Aligned_cols=80 Identities=28% Similarity=0.363 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCcCCC-----cccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRG-----HVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~~-----~~D~i~~ 119 (212)
.|++|||++|=||.+++.++..|+.+|+++|+|..+++.|++|++.|++ .+.++++|++++.... +||+|++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 5899999999999999999998888999999999999999999999997 5899999999886542 8999999
Q ss_pred cCCCCCCC
Q 028214 120 NPPFGTRK 127 (212)
Q Consensus 120 nppy~~~~ 127 (212)
|||=....
T Consensus 297 DPPsF~r~ 304 (393)
T COG1092 297 DPPSFARS 304 (393)
T ss_pred CCcccccC
Confidence 99976653
No 89
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.37 E-value=1.8e-11 Score=97.75 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=79.4
Q ss_pred ccccc-CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceE
Q 028214 21 VELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDID 99 (212)
Q Consensus 21 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~ 99 (212)
..+.| |...+.+...++..+.. .++++|||+|||+|.++..+++.+. .|+++|+|+.+++.++.+.... .+++
T Consensus 5 k~~gq~fl~d~~i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~-~~v~ 78 (253)
T TIGR00755 5 KSLGQNFLIDESVIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY-ERLE 78 (253)
T ss_pred CCCCCccCCCHHHHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC-CcEE
Confidence 34444 77788888777765433 3778999999999999999998754 7999999999999999887542 2789
Q ss_pred EEEcccccCcCCCccc---EEEEcCCCCC
Q 028214 100 FVQCDIRNLEWRGHVD---TVVMNPPFGT 125 (212)
Q Consensus 100 ~~~~d~~~~~~~~~~D---~i~~nppy~~ 125 (212)
++++|+.+.+.. ++| +|++|+||+.
T Consensus 79 v~~~D~~~~~~~-~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 79 VIEGDALKVDLP-DFPKQLKVVSNLPYNI 106 (253)
T ss_pred EEECchhcCChh-HcCCcceEEEcCChhh
Confidence 999999988765 566 9999999984
No 90
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.6e-12 Score=106.38 Aligned_cols=124 Identities=25% Similarity=0.400 Sum_probs=99.0
Q ss_pred CCCChHHHHHHHHHHHhhc-CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEc
Q 028214 26 YPTGPHIASRMLYTAENSF-GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC 103 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~-~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~ 103 (212)
|+++ ...++++....... +...++.++|+.||||.+++.+++. ..+|+|+|+++++++-|++|+..||+ |.+|++|
T Consensus 361 FQ~N-t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 361 FQTN-TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred hccC-cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 4444 44556666666554 3445678999999999999999984 77999999999999999999999999 9999999
Q ss_pred ccccCcCCC------ccc-EEEEcCCCCCCCCCchHHHHHHHHhhc--CceEEEEecCchH
Q 028214 104 DIRNLEWRG------HVD-TVVMNPPFGTRKKGVDMDFLSMALKVA--SQAVYSLHKTSTR 155 (212)
Q Consensus 104 d~~~~~~~~------~~D-~i~~nppy~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 155 (212)
-++++.... +-+ +++.||| +.|.+..+++...+.. +..+|++|++.+.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPp----R~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPP----RKGLHMKVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCC----cccccHHHHHHHHhccCccceEEEEcCHHHh
Confidence 777665443 345 8889999 8899988888666443 4699999999873
No 91
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.35 E-value=1.7e-11 Score=98.39 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=77.4
Q ss_pred HhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEE
Q 028214 41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVM 119 (212)
Q Consensus 41 ~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~ 119 (212)
+..+...++.+|||+|||+|..+..++.....+|+|+|+++.+++.|+++.... .++.+.++|+.+.+.+. +||+|++
T Consensus 45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-~~i~~~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-NKIEFEANDILKKDFPENTFDMIYS 123 (263)
T ss_pred HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-CceEEEECCcccCCCCCCCeEEEEE
Confidence 333344578899999999999998888653458999999999999999887542 27899999998876554 8999999
Q ss_pred cCCCCCCCCCchHHHHHHHHhhcC
Q 028214 120 NPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 120 nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
...+++.........++++.+.++
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLK 147 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcC
Confidence 776655433334566776666654
No 92
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=2e-11 Score=98.21 Aligned_cols=111 Identities=22% Similarity=0.235 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccC
Q 028214 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 108 (212)
....+++..+...+...+|++|||+|||.|.+++.+++....+|+|+.+|+...+.+++.++..|+ ++++...|..++
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 445567777777777789999999999999999999977334999999999999999999998887 699999999987
Q ss_pred cCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 109 EWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 109 ~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
+. +||.|++--.+.+........+++++.+.++
T Consensus 125 ~~--~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk 157 (273)
T PF02353_consen 125 PG--KFDRIVSIEMFEHVGRKNYPAFFRKISRLLK 157 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred CC--CCCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence 66 8999999888887765555677777666654
No 93
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.34 E-value=5.8e-12 Score=113.54 Aligned_cols=97 Identities=27% Similarity=0.396 Sum_probs=79.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC------------------------------------
Q 028214 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG------------------------------------ 70 (212)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~------------------------------------ 70 (212)
|..+.+++.++....+. .++..++|++||+|.+.++++...
T Consensus 172 pl~etlAaa~l~~a~w~---~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 172 PLKENLAAAILLRSGWP---QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCcHHHHHHHHHHcCCC---CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 34467788888765542 256899999999999999998631
Q ss_pred -------CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC---cccEEEEcCCCCCC
Q 028214 71 -------ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG---HVDTVVMNPPFGTR 126 (212)
Q Consensus 71 -------~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~---~~D~i~~nppy~~~ 126 (212)
..+++|+|+|+.+++.|++|+..+|+ .+++.++|+.++.... +||+|++||||...
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 12689999999999999999999988 5899999999876543 69999999999876
No 94
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.33 E-value=9.1e-11 Score=82.97 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC--CCcccEEEEcCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~npp 122 (212)
.++.+++|+|||+|.++..+++. +..+|+++|+++.+++.++++++..+. +++++.+|+..... ..+||+|++..+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 35679999999999999999976 346899999999999999999988766 78899998765322 238999998654
No 95
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.33 E-value=3.9e-11 Score=96.17 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhh---cC-CceEEEEcccccCcCCC-cccEEEE
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAAD---LE-LDIDFVQCDIRNLEWRG-HVDTVVM 119 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~---~~-~~v~~~~~d~~~~~~~~-~~D~i~~ 119 (212)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++... .. .+++++++|+.+++.++ +||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 46789999999999999988865 3 35899999999999999877542 11 27899999999988766 8999999
Q ss_pred cCCCCCCCCCchHHHHHHHHhhcC
Q 028214 120 NPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 120 nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
+-.+++.. .....++++.+.++
T Consensus 152 ~~~l~~~~--d~~~~l~ei~rvLk 173 (261)
T PLN02233 152 GYGLRNVV--DRLKAMQEMYRVLK 173 (261)
T ss_pred ecccccCC--CHHHHHHHHHHHcC
Confidence 88777653 23456677766654
No 96
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.7e-11 Score=91.03 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=78.7
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEE
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFV 101 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~ 101 (212)
..++...|.+.+.|+..+.. .++++|||+|||||..+..+++... +|+++|.++...+.|++|++..|. |+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~ 125 (209)
T COG2518 51 CGQTISAPHMVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVR 125 (209)
T ss_pred CCceecCcHHHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEE
Confidence 34566667777777655544 4889999999999999999998844 999999999999999999999998 89999
Q ss_pred EcccccCcCC-CcccEEEEcCC
Q 028214 102 QCDIRNLEWR-GHVDTVVMNPP 122 (212)
Q Consensus 102 ~~d~~~~~~~-~~~D~i~~npp 122 (212)
++|...--.+ ..||.|+....
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeec
Confidence 9998765444 48999998543
No 97
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=6e-11 Score=93.88 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~npp 122 (212)
++.+|||+|||+|..+..+++. +..+++|+|+++.+++.|++++...+. +++++++|+.+.+.+ .+|+|+++-+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~~ 131 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNFT 131 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeecc
Confidence 6679999999999999988864 346899999999999999999876543 689999999988765 6999999888
Q ss_pred CCCCCCCchHHHHHHHHhhcC
Q 028214 123 FGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~ 143 (212)
+++.........++++.+.++
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lk 152 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLN 152 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcC
Confidence 877644444567777776664
No 98
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.9e-11 Score=96.55 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=81.5
Q ss_pred ccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 028214 22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV 101 (212)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~ 101 (212)
..|.|-....+...++..+.. .+++.|||+|+|.|.++..+++.+. +|+++|+|+.+++..++.....+ +++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~-n~~vi 81 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD-NLTVI 81 (259)
T ss_pred cccccccCHHHHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc-ceEEE
Confidence 345577677776666654443 3688999999999999999999855 89999999999999998876322 89999
Q ss_pred EcccccCcCCC--cccEEEEcCCCCCC
Q 028214 102 QCDIRNLEWRG--HVDTVVMNPPFGTR 126 (212)
Q Consensus 102 ~~d~~~~~~~~--~~D~i~~nppy~~~ 126 (212)
++|+++..... +++.|++|.||+..
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCCccc
Confidence 99999999887 79999999999864
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.32 E-value=9.3e-11 Score=90.23 Aligned_cols=94 Identities=20% Similarity=0.417 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC--CcccEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR--GHVDTVV 118 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~--~~~D~i~ 118 (212)
...++.++||+|||+|.+++.+++. + ..+|+++|+++.+++.+++|++.++. +++++.+|..+.... .+||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 4458889999999999999999864 3 45899999999999999999998874 789999998764332 3899999
Q ss_pred EcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 119 MNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 119 ~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
++.. .......++.+.+..+
T Consensus 117 ~~~~-----~~~~~~~l~~~~~~Lk 136 (198)
T PRK00377 117 IGGG-----SEKLKEIISASWEIIK 136 (198)
T ss_pred ECCC-----cccHHHHHHHHHHHcC
Confidence 9653 1223456666665544
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=3.9e-11 Score=102.60 Aligned_cols=81 Identities=26% Similarity=0.311 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCC-CeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---CCcccEEEEc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RGHVDTVVMN 120 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~n 120 (212)
...++++|||+|||+|..+..+++... .+|+++|+++.+++.+++|++.++.+++++++|+.+... ..+||.|++|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 345788999999999999999997643 589999999999999999999988778899999987542 2379999999
Q ss_pred CCCCC
Q 028214 121 PPFGT 125 (212)
Q Consensus 121 ppy~~ 125 (212)
||+..
T Consensus 321 ~Pcs~ 325 (427)
T PRK10901 321 APCSA 325 (427)
T ss_pred CCCCc
Confidence 99864
No 101
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.32 E-value=1.5e-11 Score=94.20 Aligned_cols=91 Identities=29% Similarity=0.423 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
.++.+|+|++||.|.+++.+++. ..+.|+++|+||.+++.+++|++.|++ .+.++++|..++.....||.|++|.|.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 47889999999999999999984 356899999999999999999999988 689999999999876699999999983
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
. ...|+..++...+
T Consensus 180 ~------~~~fl~~~~~~~~ 193 (200)
T PF02475_consen 180 S------SLEFLDAALSLLK 193 (200)
T ss_dssp S------GGGGHHHHHHHEE
T ss_pred H------HHHHHHHHHHHhc
Confidence 3 3357776665554
No 102
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.32 E-value=1e-11 Score=101.99 Aligned_cols=103 Identities=26% Similarity=0.353 Sum_probs=73.2
Q ss_pred ccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc--------CCCeEEEEeCChHHHHHHHHHH
Q 028214 20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVIAIDIDSDSLELASENA 91 (212)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~--------~~~~v~~~D~~~~~~~~a~~~~ 91 (212)
.....+|.||..++.-+...+. ..++.+|+|++||+|.+.+.+.+. ....++|+|+++.++..|+.|+
T Consensus 22 ~k~~G~~~TP~~i~~l~~~~~~----~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl 97 (311)
T PF02384_consen 22 RKKLGQFYTPREIVDLMVKLLN----PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNL 97 (311)
T ss_dssp TTSCGGC---HHHHHHHHHHHT----T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHH
T ss_pred ccccceeehHHHHHHHHHhhhh----ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhh
Confidence 3456789999888876666552 346779999999999999888862 4568999999999999999988
Q ss_pred hhcCC---ceEEEEcccccCcCCC---cccEEEEcCCCCCC
Q 028214 92 ADLEL---DIDFVQCDIRNLEWRG---HVDTVVMNPPFGTR 126 (212)
Q Consensus 92 ~~~~~---~v~~~~~d~~~~~~~~---~~D~i~~nppy~~~ 126 (212)
...+. +..+.++|....+... +||+|++||||...
T Consensus 98 ~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 98 LLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred hhhccccccccccccccccccccccccccccccCCCCcccc
Confidence 76654 3568999987665542 89999999999765
No 103
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=2.1e-11 Score=97.91 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMN 120 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~n 120 (212)
...++.+|||+|||+|..+..++.. + ...|+++|+++.+++.+++|++.++. ++++++.|...+.... .||.|++|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 3457889999999999999988864 2 35899999999999999999999887 7899999988765432 79999999
Q ss_pred CCCCCC
Q 028214 121 PPFGTR 126 (212)
Q Consensus 121 ppy~~~ 126 (212)
||+...
T Consensus 148 ~Pcsg~ 153 (264)
T TIGR00446 148 APCSGE 153 (264)
T ss_pred CCCCCC
Confidence 998643
No 104
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.32 E-value=2.2e-11 Score=102.24 Aligned_cols=95 Identities=24% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC-CCcccEEEEcCCCCC
Q 028214 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RGHVDTVVMNPPFGT 125 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~-~~~~D~i~~nppy~~ 125 (212)
+.+|||++||+|.+++.++.. +...|+++|+|+.+++.+++|++.++. ++++.++|+..+.. ..+||+|++|||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999864 556899999999999999999999987 67899999987654 348999999996
Q ss_pred CCCCchHHHHHHHHhhc--CceEEEE
Q 028214 126 RKKGVDMDFLSMALKVA--SQAVYSL 149 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~--~~~~~~~ 149 (212)
+....+++.++... ++.+|++
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 45567777755443 3466665
No 105
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.31 E-value=7.5e-11 Score=94.37 Aligned_cols=141 Identities=21% Similarity=0.128 Sum_probs=94.1
Q ss_pred hHHHHHHhccCCCCCCcccccccCCCChHHHHH-HHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCCh
Q 028214 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASR-MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (212)
Q Consensus 3 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~ 81 (212)
++.|++.+.++.+|+++...+.......+..+. .-......+....+++|||+|||+|..+..++..|++.|+|+|.++
T Consensus 69 ~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~ 148 (315)
T PF08003_consen 69 RQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP 148 (315)
T ss_pred HHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence 567999999999999988776443333233333 2233344445779999999999999999999999999999999987
Q ss_pred HHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCCCCCCC-chHHHHHHHHhhcC
Q 028214 82 DSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG-VDMDFLSMALKVAS 143 (212)
Q Consensus 82 ~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~-~~~~~l~~~~~~~~ 143 (212)
.-+...+.-....+. .+..+...+++++....||+|++=..+.|.++. ..+..++..++.++
T Consensus 149 lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gG 213 (315)
T PF08003_consen 149 LFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGG 213 (315)
T ss_pred HHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCC
Confidence 666443332222222 334444567777764599999997776665333 22334444444444
No 106
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.30 E-value=1.1e-10 Score=91.70 Aligned_cols=106 Identities=27% Similarity=0.348 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCC
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
..++.+|||+|||+|.++..+++.+. .|+|+|+++.+++.|+++....+. ++++..+|+... ..+||+|++.-++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchh
Confidence 34678999999999999999998765 799999999999999999887665 688999995432 2379999998887
Q ss_pred CCCCCCchHHHHHHHHhhcCceEEEEecCch
Q 028214 124 GTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (212)
++.........++.+.+..++.+++++.+.+
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 6644333445566666555555666655543
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.30 E-value=3e-10 Score=84.07 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=106.7
Q ss_pred cCCCCCCcccccccCCCChHHHHHHHHHHHhhcC---CCCCC-EEEEEcCCcChHHHHHHHcCC-CeEEEEeCChHHHHH
Q 028214 12 DLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG---DVSNK-VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLEL 86 (212)
Q Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~-~vlDlg~G~G~~~~~~~~~~~-~~v~~~D~~~~~~~~ 86 (212)
++..|..+.-..+-|.. ......++........ ..+.. +|||+|||.|.+...+++.+. .+.+|+|.++.+++.
T Consensus 28 El~Nfr~hgd~GEvWFg-~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 28 ELTNFREHGDEGEVWFG-EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred HHhhcccCCCccceecC-CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 34555544433333333 3344444444433322 12333 999999999999999998864 459999999999999
Q ss_pred HHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEEcCCCCCC---------CCCchHHHHHHHHhhcCceEEEEecCch
Q 028214 87 ASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR---------KKGVDMDFLSMALKVASQAVYSLHKTST 154 (212)
Q Consensus 87 a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (212)
|+..++..+. .|+|.+.|+.+..... +||+|+--.-|... +.......+++.++..+-.+..+|+- +
T Consensus 107 A~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-T 185 (227)
T KOG1271|consen 107 AQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-T 185 (227)
T ss_pred HHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-c
Confidence 9988888887 3999999999865443 78877743333222 22344556666666433233334443 4
Q ss_pred HHHHHHHHHhhcCCcceeEEEEEeecCCcccccccceeeeEEEEEE
Q 028214 155 REHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLW 200 (212)
Q Consensus 155 ~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (212)
..++.+.. ....+......+.| .+.|..+....+....+
T Consensus 186 ~dELv~~f------~~~~f~~~~tvp~p-tF~FgG~~G~tvt~vaF 224 (227)
T KOG1271|consen 186 KDELVEEF------ENFNFEYLSTVPTP-TFMFGGSVGSTVTSVAF 224 (227)
T ss_pred HHHHHHHH------hcCCeEEEEeeccc-eEEeccccccEEEEEEE
Confidence 55555544 12222222233444 56777766655544433
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=7.3e-11 Score=101.43 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~np 121 (212)
...++++|||+|||+|..+..++.. +..+|+++|+++.+++.+++|++..|. +++++++|+.++....+||+|++||
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcC
Confidence 3457789999999999999888864 245899999999999999999999887 7899999998876545899999999
Q ss_pred CCCC
Q 028214 122 PFGT 125 (212)
Q Consensus 122 py~~ 125 (212)
|+..
T Consensus 327 Pcsg 330 (445)
T PRK14904 327 PCTG 330 (445)
T ss_pred CCCC
Confidence 9854
No 109
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.28 E-value=8.7e-11 Score=90.11 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCc---CCC-cccEEEEcC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE---WRG-HVDTVVMNP 121 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~---~~~-~~D~i~~np 121 (212)
...++||+|||+|.++..++.. +...++|+|+++.+++.|++++...+. +++++++|+.+++ ... .+|.|++|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4568999999999999999965 456899999999999999999988776 8999999998653 222 899999998
Q ss_pred CCCCCCC------CchHHHHHHHHhhcC
Q 028214 122 PFGTRKK------GVDMDFLSMALKVAS 143 (212)
Q Consensus 122 py~~~~~------~~~~~~l~~~~~~~~ 143 (212)
|-.+... -....+++++.+.++
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~Lk 123 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLK 123 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhC
Confidence 7544321 122456777666654
No 110
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=2.1e-11 Score=96.12 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-CcccEEEEc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMN 120 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~n 120 (212)
.++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|+++....+ +++.+.+...++.. .+||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--VTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--CeEEEEecccccccCCCccEEEEC
Confidence 46679999999999998888752 2 2489999999999999998876543 45555555444433 389999999
Q ss_pred CCCCCCCCCchHHHHHHHHhhcCceEE
Q 028214 121 PPFGTRKKGVDMDFLSMALKVASQAVY 147 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~~~~~~ 147 (212)
..+++..+......++++.+..++.++
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~~~~~ 163 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALARRLVL 163 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcCeeEE
Confidence 999988654445788888887764333
No 111
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=1.1e-10 Score=98.33 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCccc
Q 028214 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVD 115 (212)
Q Consensus 36 ~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D 115 (212)
.+..+...+...++.+|||+|||+|.+++.+++....+|+|+|+|+.+++.|+++... ..+++...|..++ ..+||
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l--~~~fD 230 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDL--NGQFD 230 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhc--CCCCC
Confidence 3444444445567889999999999999999976445899999999999999998853 3688888998776 24899
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 116 TVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 116 ~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
.|++...+++........+++++.+.++
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk 258 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLK 258 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcC
Confidence 9999988877644333456666665554
No 112
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=2.5e-10 Score=99.08 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~ 125 (212)
.++.+|||+|||+|..++.+++....+|+|+|+|+.+++.|+++....+.++++.++|+.+.+.+. +||+|++...+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 467899999999999999888754458999999999999999987655447899999998877554 8999999888776
Q ss_pred CCCCchHHHHHHHHhhcC
Q 028214 126 RKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~ 143 (212)
..+ ...+++++.+.++
T Consensus 345 ~~d--~~~~l~~~~r~Lk 360 (475)
T PLN02336 345 IQD--KPALFRSFFKWLK 360 (475)
T ss_pred cCC--HHHHHHHHHHHcC
Confidence 632 3355666665554
No 113
>PRK05785 hypothetical protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=91.06 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~ 126 (212)
++.+|||+|||+|.++..+++....+|+|+|+|++|++.|++. ..++++|+.+++.++ +||+|+++...++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 4679999999999999999876335899999999999999764 235789999988766 89999998887654
Q ss_pred CCCchHHHHHHHHhhcCc
Q 028214 127 KKGVDMDFLSMALKVASQ 144 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~ 144 (212)
. .....+++..+.++.
T Consensus 124 ~--d~~~~l~e~~RvLkp 139 (226)
T PRK05785 124 D--NIEKVIAEFTRVSRK 139 (226)
T ss_pred C--CHHHHHHHHHHHhcC
Confidence 3 234566777766654
No 114
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=1.2e-10 Score=99.44 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC--CCcccEEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVM 119 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~ 119 (212)
...++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++|++..|. +++++++|..+++. ..+||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3457889999999999999988865 246899999999999999999999887 68999999987652 238999999
Q ss_pred cCCCCCC
Q 028214 120 NPPFGTR 126 (212)
Q Consensus 120 nppy~~~ 126 (212)
|||+...
T Consensus 314 DaPCsg~ 320 (431)
T PRK14903 314 DAPCTSL 320 (431)
T ss_pred CCCCCCC
Confidence 9999544
No 115
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.26 E-value=2.5e-10 Score=88.69 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=77.9
Q ss_pred cCCCCCCEEEEEcCCcChHHHHHHHc-CC------CeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEcccccCcCCC
Q 028214 44 FGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRG 112 (212)
Q Consensus 44 ~~~~~~~~vlDlg~G~G~~~~~~~~~-~~------~~v~~~D~~~~~~~~a~~~~~~~~~----~v~~~~~d~~~~~~~~ 112 (212)
+...+++++||++||||-++.-+.++ +. .+|+.+|+|++|+..++++....+. .+.++.+|++++++++
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 34557799999999999988888765 22 6899999999999999999976655 4899999999999887
Q ss_pred -cccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEe
Q 028214 113 -HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH 150 (212)
Q Consensus 113 -~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 150 (212)
+||...+ .|....-......++++.++++ ++.|.++
T Consensus 176 ~s~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 176 DSFDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CcceeEEE--ecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8998776 2333222333456677766654 3344333
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=1.1e-10 Score=100.34 Aligned_cols=80 Identities=25% Similarity=0.340 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC--CCcccEEEEc
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVMN 120 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~n 120 (212)
..++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|++.++. +++++++|+.+... ..+||+|++|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 357789999999999999999875 356899999999999999999999887 79999999987642 2479999999
Q ss_pred CCCCC
Q 028214 121 PPFGT 125 (212)
Q Consensus 121 ppy~~ 125 (212)
||+..
T Consensus 328 ~Pcsg 332 (444)
T PRK14902 328 APCSG 332 (444)
T ss_pred CCCCC
Confidence 99753
No 117
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=1.8e-10 Score=92.93 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CC-CeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEcCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNPP 122 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~-~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~npp 122 (212)
.++++|||+|||+|..++.+++. +. .+|+++|+++.+++.|+++....+. ++++.++|+.+++..+ .||+|++|..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 47889999999999988777654 33 4799999999999999999988776 7899999999877654 8999999988
Q ss_pred CCCCCCCchHHHHHHHHhhcC
Q 028214 123 FGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~ 143 (212)
+++... ....++++.+.++
T Consensus 156 ~~~~~d--~~~~l~~~~r~Lk 174 (272)
T PRK11873 156 INLSPD--KERVFKEAFRVLK 174 (272)
T ss_pred ccCCCC--HHHHHHHHHHHcC
Confidence 876532 3356676666655
No 118
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.4e-10 Score=86.10 Aligned_cols=111 Identities=23% Similarity=0.239 Sum_probs=86.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMN 120 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~n 120 (212)
+..++++|+|.|.|||.++..+++. +..+|+..|+.++.++.|++|++..+. ++++..+|+.+....+.||.|+.|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LD 170 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLD 170 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEc
Confidence 4568999999999999999999964 347999999999999999999999877 499999999998877799999999
Q ss_pred CCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHH
Q 028214 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
.| ...+.++.+......+..+++..++.+.+....
T Consensus 171 mp-------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~ 205 (256)
T COG2519 171 LP-------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV 205 (256)
T ss_pred CC-------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 98 334555555555443344444455555555444
No 119
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.25 E-value=2.7e-11 Score=97.45 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=70.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~npp 122 (212)
.+..++.|+|+|||+|+++.+++..|+++|+++|-+ +|.+.|++.+..|.+ ++.++.|.++++..+.+.|+|++.|.
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence 445899999999999999999999999999999997 599999999988876 89999999999999889999999886
No 120
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=9.5e-11 Score=92.23 Aligned_cols=92 Identities=25% Similarity=0.292 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFG 124 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~ 124 (212)
..+.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++... ++.++.+|+.+.+... +||+|+++-+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 345799999999999999999764 45789999999999999887652 5889999999887544 899999998887
Q ss_pred CCCCCchHHHHHHHHhhcC
Q 028214 125 TRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~ 143 (212)
+..+ ....++++.+..+
T Consensus 110 ~~~~--~~~~l~~~~~~L~ 126 (240)
T TIGR02072 110 WCDD--LSQALSELARVLK 126 (240)
T ss_pred hccC--HHHHHHHHHHHcC
Confidence 6532 2345555555543
No 121
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.25 E-value=9.9e-11 Score=90.49 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=70.3
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CC-CeEEEEeCChHHHHHHHHHHhhcCC-ceEEE
Q 028214 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFV 101 (212)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~-~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~ 101 (212)
+..+.|.+.+.++..+. ..++++|||+|||+|..+..++.. +. ..|+++|.++...+.|++|+...+. ++.++
T Consensus 53 ~~is~P~~~a~~l~~L~----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~ 128 (209)
T PF01135_consen 53 QTISAPSMVARMLEALD----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVV 128 (209)
T ss_dssp EEE--HHHHHHHHHHTT----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEE
T ss_pred eechHHHHHHHHHHHHh----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEE
Confidence 34444566665554443 458999999999999999999976 33 3699999999999999999999888 89999
Q ss_pred EcccccCcCCC-cccEEEEcCC
Q 028214 102 QCDIRNLEWRG-HVDTVVMNPP 122 (212)
Q Consensus 102 ~~d~~~~~~~~-~~D~i~~npp 122 (212)
++|...-.... .||.|+++..
T Consensus 129 ~gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 129 VGDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp ES-GGGTTGGG-SEEEEEESSB
T ss_pred EcchhhccccCCCcCEEEEeec
Confidence 99987654333 8999999765
No 122
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.24 E-value=2e-10 Score=86.62 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
..-.+++|+|||.|.++..++.+ +..++++|+++.+++.|+++..... +|+++++|+....+..+||+|++.=.++..
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT---SS-EEEEEEES-GGGS
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCCCCCeeEEEEehHhHcC
Confidence 34568999999999999999987 6799999999999999999988654 899999999888777799999987776665
Q ss_pred CCC-chHHHHHHHHhhcC
Q 028214 127 KKG-VDMDFLSMALKVAS 143 (212)
Q Consensus 127 ~~~-~~~~~l~~~~~~~~ 143 (212)
.+. .....++.....+.
T Consensus 120 ~~~~~L~~~l~~l~~~L~ 137 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALA 137 (201)
T ss_dssp SSHHHHHHHHHHHHHTEE
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 443 23345566555543
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.24 E-value=9.6e-11 Score=91.01 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-------------cCCceEEEEcccccCcCC--C
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWR--G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~v~~~~~d~~~~~~~--~ 112 (212)
++.++||+|||.|..++.+|++|. .|+|+|+|+.+++.+...... .+.+++++++|+.++... .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 567999999999999999999877 899999999999986432110 122689999999988753 3
Q ss_pred cccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 113 ~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
.||.|+-.-.+++........+++...+.++
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk 143 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLP 143 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcC
Confidence 7999987766666644444455555554443
No 124
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.24 E-value=9.4e-12 Score=100.11 Aligned_cols=79 Identities=30% Similarity=0.384 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCcC----CCcccEEEEc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW----RGHVDTVVMN 120 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~----~~~~D~i~~n 120 (212)
++++|||++|=||.+++.++..|+.+|+.+|.|..+++.+++|+..|+. +++++++|+.++.. ..+||+|++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 6889999999999999999988888999999999999999999999986 68999999987543 2389999999
Q ss_pred CCCCCC
Q 028214 121 PPFGTR 126 (212)
Q Consensus 121 ppy~~~ 126 (212)
||=...
T Consensus 203 PPsF~k 208 (286)
T PF10672_consen 203 PPSFAK 208 (286)
T ss_dssp -SSEES
T ss_pred CCCCCC
Confidence 996544
No 125
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.24 E-value=4.7e-10 Score=86.18 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC--CCcccEEEEcCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~npp 122 (212)
.++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.+++|++.++. +++++++|+.+... ...+|.++.+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~ 118 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG 118 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC
Confidence 47789999999999999999864 346999999999999999999988776 78999999865321 125677776532
Q ss_pred CCCCCCCchHHHHHHHHhhcC
Q 028214 123 FGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~ 143 (212)
......++++.+.++
T Consensus 119 ------~~~~~~l~~~~~~Lk 133 (196)
T PRK07402 119 ------RPIKEILQAVWQYLK 133 (196)
T ss_pred ------cCHHHHHHHHHHhcC
Confidence 122456666665554
No 126
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.24 E-value=2.3e-10 Score=94.38 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~ 125 (212)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++.... +++++.+|+.+.+... +||+|+++..+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--CCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 5679999999999998888764 4468999999999999999886533 6889999999887654 8999999988876
Q ss_pred CCCCchHHHHHHHHhhcC
Q 028214 126 RKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~ 143 (212)
..+ ....++++.+.++
T Consensus 191 ~~d--~~~~L~e~~rvLk 206 (340)
T PLN02490 191 WPD--PQRGIKEAYRVLK 206 (340)
T ss_pred CCC--HHHHHHHHHHhcC
Confidence 532 2345666666654
No 127
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.23 E-value=4.5e-11 Score=104.82 Aligned_cols=104 Identities=26% Similarity=0.345 Sum_probs=78.6
Q ss_pred cccCCCChHHHHHHHHHHHhhcCC---CCCCEEEEEcCCcChHHHHHHHcC---------CCeEEEEeCChHHHHHHHHH
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATLLG---------ADQVIAIDIDSDSLELASEN 90 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~vlDlg~G~G~~~~~~~~~~---------~~~v~~~D~~~~~~~~a~~~ 90 (212)
..||.||+.++..|+..+....+. ....+|+|++||+|.+.+.++.+. ...++|+|+|+.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 578999999999999877543221 145699999999999998888542 14789999999999999999
Q ss_pred HhhcCC-ceEEEEcccccCc----C--CCcccEEEEcCCCCCC
Q 028214 91 AADLEL-DIDFVQCDIRNLE----W--RGHVDTVVMNPPFGTR 126 (212)
Q Consensus 91 ~~~~~~-~v~~~~~d~~~~~----~--~~~~D~i~~nppy~~~ 126 (212)
+...+. .+++.+.|..... . ...||+|++||||...
T Consensus 83 l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 83 LGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HhhcCCCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 877652 4556666644321 1 1279999999999864
No 128
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=7.4e-11 Score=103.45 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCc--CC-CcccEEEEcCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WR-GHVDTVVMNPP 122 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~npp 122 (212)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++....+.+++++++|..+++ .+ .+||+|+++++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 36789999999999998888864 4569999999999999999987766557889999998865 23 38999999999
Q ss_pred CCCCC-----------CCchHHHHHHHHhhcC
Q 028214 123 FGTRK-----------KGVDMDFLSMALKVAS 143 (212)
Q Consensus 123 y~~~~-----------~~~~~~~l~~~~~~~~ 143 (212)
+|+.. ......+++++.+.++
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLK 528 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK 528 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 87531 1123466777666655
No 129
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.23 E-value=3.6e-10 Score=94.30 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccC---cCCCcccEEEEcC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL---EWRGHVDTVVMNP 121 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~---~~~~~~D~i~~np 121 (212)
..+..+||+|||+|.+++.+|+. +...++|+|+++.+++.|.+++..++. ++.++++|+..+ ....++|.|++|.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 35669999999999999999976 456899999999999999999988887 899999998654 2234899999998
Q ss_pred CCCCCCCC----chHHHHHHHHhhcCceEEEEecCchHHHHH
Q 028214 122 PFGTRKKG----VDMDFLSMALKVASQAVYSLHKTSTREHVK 159 (212)
Q Consensus 122 py~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (212)
|..|.... ....+++++.+.++.+..+.+.+....++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~ 242 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFE 242 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHH
Confidence 87664221 224677777777664444444444444443
No 130
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.23 E-value=3e-11 Score=91.68 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=83.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
+.....+|.|+|||+|..+..++++ +.+.++|+|-|++|++.|++... +++|..+|+.++.++..+|++++|-.|
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~p~~~~dllfaNAvl 102 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWKPEQPTDLLFANAVL 102 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcCCCCccchhhhhhhh
Confidence 4457789999999999999999965 66799999999999999987765 789999999999988899999999999
Q ss_pred CCCCCCchHHHHHHHHhhcC-ceEEEEecCchHH
Q 028214 124 GTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTRE 156 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 156 (212)
++..+. ...+.+.+..+. +++.-+..|.+..
T Consensus 103 qWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 103 QWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhcccc--HHHHHHHHHhhCCCceEEEECCCccC
Confidence 987432 344555554443 4555555555433
No 131
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.3e-09 Score=89.43 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCC--CeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMN 120 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~n 120 (212)
...++++|||+|||+|.++..+++... ..|+++|+++.+++.|+++++.++. ++.++++|+.+..... .||+|+++
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 334778999999999999999987532 3699999999999999999998877 7899999987665433 79999986
Q ss_pred C
Q 028214 121 P 121 (212)
Q Consensus 121 p 121 (212)
.
T Consensus 157 ~ 157 (322)
T PRK13943 157 V 157 (322)
T ss_pred C
Confidence 3
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=3e-10 Score=97.40 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=69.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC-----CCcccE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-----RGHVDT 116 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~-----~~~~D~ 116 (212)
...++++|||+|||+|..+..++.. + ..+|+++|+++.+++.+++|++..|. +++++++|+.+... ..+||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 4457889999999999999998865 2 35899999999999999999999987 79999999987752 238999
Q ss_pred EEEcCCCCC
Q 028214 117 VVMNPPFGT 125 (212)
Q Consensus 117 i~~nppy~~ 125 (212)
|++|||+.-
T Consensus 329 Vl~DaPCSg 337 (434)
T PRK14901 329 ILLDAPCSG 337 (434)
T ss_pred EEEeCCCCc
Confidence 999999753
No 133
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.21 E-value=1e-10 Score=97.86 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=78.2
Q ss_pred CEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC--CcccEEEEcCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVMNPPFG 124 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~--~~~D~i~~nppy~ 124 (212)
-++||++||+|..++.+++. +...|+++|+|+.+++.+++|++.++. +++++++|+..+... .+||+|+.|| |.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 48999999999999999987 567999999999999999999999987 689999999887653 3799999999 43
Q ss_pred CCCCCchHHHHHHHHhhcC--ceEEEE
Q 028214 125 TRKKGVDMDFLSMALKVAS--QAVYSL 149 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~--~~~~~~ 149 (212)
....+++.++.... +.++++
T Consensus 125 -----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 -----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -----CcHHHHHHHHHhcccCCEEEEE
Confidence 34568887776653 355555
No 134
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.7e-10 Score=94.61 Aligned_cols=90 Identities=27% Similarity=0.402 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC-CcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-GHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~~D~i~~nppy~ 124 (212)
.|.+|+|++||.|.+++.+|+.+..+|+++|+||.+++.+++|++.|++ .+.+++||+...... ..+|-|++|.|.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~- 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK- 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence 5899999999999999999998876799999999999999999999998 488999999999887 589999999884
Q ss_pred CCCCCchHHHHHHHHhhcC
Q 028214 125 TRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~ 143 (212)
....++..++...+
T Consensus 267 -----~a~~fl~~A~~~~k 280 (341)
T COG2520 267 -----SAHEFLPLALELLK 280 (341)
T ss_pred -----cchhhHHHHHHHhh
Confidence 23456665555543
No 135
>PRK04266 fibrillarin; Provisional
Probab=99.21 E-value=6.5e-10 Score=87.09 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC
Q 028214 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (212)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (212)
...++.++... ..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.+.++++.. .++.++.+|+.+.
T Consensus 55 ~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~ 132 (226)
T PRK04266 55 SKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKP 132 (226)
T ss_pred cchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCc
Confidence 45555555544 3345568889999999999999999976 3458999999999999887776643 2789999998752
Q ss_pred c----CCCcccEEEEcCC
Q 028214 109 E----WRGHVDTVVMNPP 122 (212)
Q Consensus 109 ~----~~~~~D~i~~npp 122 (212)
. ...+||+|+++.+
T Consensus 133 ~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 133 ERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred chhhhccccCCEEEECCC
Confidence 1 1237999998755
No 136
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.19 E-value=2.5e-10 Score=89.37 Aligned_cols=92 Identities=24% Similarity=0.217 Sum_probs=73.3
Q ss_pred CEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
++|||+|||+|..+..+++.. ..+|+|+|+++.+++.+++++...+. +++++.+|+.+.+.+.+||+|++.-.+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999998753 46899999999999999999987765 689999998766555589999998777665
Q ss_pred CCCchHHHHHHHHhhcC
Q 028214 127 KKGVDMDFLSMALKVAS 143 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~ 143 (212)
.+ ...+++++.+.++
T Consensus 81 ~~--~~~~l~~~~~~Lk 95 (224)
T smart00828 81 KD--KMDLFSNISRHLK 95 (224)
T ss_pred CC--HHHHHHHHHHHcC
Confidence 32 3456666665554
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=7.8e-10 Score=87.21 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCc
Q 028214 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE 109 (212)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (212)
..++...... .++++|||+|||+|..++.+++. +..+|+++|+++++++.|++|++.++. +++++++|+.+..
T Consensus 57 g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3344444433 36789999999999988877754 356999999999999999999999987 6999999998753
Q ss_pred C-------CCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 110 W-------RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 110 ~-------~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
. ..+||+|+.|.. +.....+++.+.+..+
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVK 169 (234)
T ss_pred HHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcC
Confidence 2 238999999864 2334456666665554
No 138
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.17 E-value=8.1e-10 Score=94.55 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCc--eEEEEcccccCcC---CCcccEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIRNLEW---RGHVDTVV 118 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~--v~~~~~d~~~~~~---~~~~D~i~ 118 (212)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|++..|.. +.+..+|...... ..+||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4457899999999999999999865 4468999999999999999999988874 4447777765443 23799999
Q ss_pred EcCCCCCC
Q 028214 119 MNPPFGTR 126 (212)
Q Consensus 119 ~nppy~~~ 126 (212)
+|||+...
T Consensus 315 lDaPcSg~ 322 (426)
T TIGR00563 315 LDAPCSAT 322 (426)
T ss_pred EcCCCCCC
Confidence 99998754
No 139
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.16 E-value=2.4e-10 Score=89.53 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=78.3
Q ss_pred ccccCCC-ChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ce
Q 028214 22 ELEQYPT-GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DI 98 (212)
Q Consensus 22 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v 98 (212)
...|+.+ .+.+...++..+. ..+++.|||+|.|||+++..+...+. +|+++|+|+.++....++.+.... +.
T Consensus 35 d~GQHilkNp~v~~~I~~ka~----~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kL 109 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKAD----LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKL 109 (315)
T ss_pred ccchhhhcCHHHHHHHHhccC----CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcccee
Confidence 3444433 3444444444433 34789999999999999999998755 999999999999999998876553 78
Q ss_pred EEEEcccccCcCCCcccEEEEcCCCCCC
Q 028214 99 DFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (212)
Q Consensus 99 ~~~~~d~~~~~~~~~~D~i~~nppy~~~ 126 (212)
+++++|+++.+.+ .||.+++|.||..+
T Consensus 110 qV~~gD~lK~d~P-~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 110 QVLHGDFLKTDLP-RFDGCVSNLPYQIS 136 (315)
T ss_pred eEEecccccCCCc-ccceeeccCCcccc
Confidence 9999999998765 89999999999865
No 140
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.16 E-value=3.2e-10 Score=98.39 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc--CcCCC-cccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN--LEWRG-HVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~--~~~~~-~~D~i~~nppy 123 (212)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++.... ..+++++++|+.+ ++.+. +||+|+++.++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH-YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc-CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 466799999999999999999874 5899999999999887653221 1278999999864 33333 89999999999
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
++........+++++.+.++
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk 133 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLK 133 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcC
Confidence 88765545567777776655
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.15 E-value=2.1e-09 Score=84.93 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=82.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcC----CCcccE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW----RGHVDT 116 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~----~~~~D~ 116 (212)
+..+|++|+|.|.|+|.++..+++. +..+|+..|..++..+.|++|++..+. ++++.+.|+.+..+ ...+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 4569999999999999999999975 456999999999999999999999987 79999999965333 137999
Q ss_pred EEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHHHhhcC
Q 028214 117 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFN 167 (212)
Q Consensus 117 i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 167 (212)
|+.|.| .+...+..+.+++ .+.+.++++-.++.+.+.... ..|.
T Consensus 117 vfLDlp----~Pw~~i~~~~~~L--~~~gG~i~~fsP~ieQv~~~~-~~L~ 160 (247)
T PF08704_consen 117 VFLDLP----DPWEAIPHAKRAL--KKPGGRICCFSPCIEQVQKTV-EALR 160 (247)
T ss_dssp EEEESS----SGGGGHHHHHHHE---EEEEEEEEEESSHHHHHHHH-HHHH
T ss_pred EEEeCC----CHHHHHHHHHHHH--hcCCceEEEECCCHHHHHHHH-HHHH
Confidence 999999 3444455555554 133555666666666666665 4444
No 142
>PLN03075 nicotianamine synthase; Provisional
Probab=99.15 E-value=1.8e-09 Score=87.10 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCcChH-HHHHH-Hc-CCCeEEEEeCChHHHHHHHHHHhh-cCC--ceEEEEcccccCcCC-CcccEEEEc
Q 028214 48 SNKVVADFGCGCGTL-GAAAT-LL-GADQVIAIDIDSDSLELASENAAD-LEL--DIDFVQCDIRNLEWR-GHVDTVVMN 120 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~-~~~~~-~~-~~~~v~~~D~~~~~~~~a~~~~~~-~~~--~v~~~~~d~~~~~~~-~~~D~i~~n 120 (212)
.+++|+|+|||.|.+ ++.++ .. +..+++++|+|+++++.|+++++. .++ +++|..+|+.+.... ..||+|+++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 789999999998854 33333 33 456899999999999999999964 554 699999999986533 389999999
Q ss_pred CCCCCCCCCchHHHHHHHHhhcCceEEEEe
Q 028214 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (212)
..+...+......++...+..+.+.+++.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 76666566667777877776653333333
No 143
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=2.1e-09 Score=84.53 Aligned_cols=97 Identities=25% Similarity=0.303 Sum_probs=73.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNP 121 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~np 121 (212)
...++.+|||+|||+|..+..++... ..+++++|+++.+++.++++......++++..+|+...+... .||+|+++-
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 44577899999999999999998652 468999999999999999884433347899999988766544 899999988
Q ss_pred CCCCCCCCchHHHHHHHHhhcC
Q 028214 122 PFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 122 py~~~~~~~~~~~l~~~~~~~~ 143 (212)
.+++..+ ....++++.+.++
T Consensus 96 ~~~~~~~--~~~~l~~~~~~L~ 115 (241)
T PRK08317 96 VLQHLED--PARALAEIARVLR 115 (241)
T ss_pred hhhccCC--HHHHHHHHHHHhc
Confidence 8776532 2344555554443
No 144
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=3.7e-10 Score=88.06 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHH-HHhh------------cCCceEEEEcccccCcCCC--
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE-NAAD------------LELDIDFVQCDIRNLEWRG-- 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~-~~~~------------~~~~v~~~~~d~~~~~~~~-- 112 (212)
++.+|||+|||.|..++.+|.+|. +|+|+|+++.+++.+.. +... ...++++.++|+.++....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 567999999999999999999877 89999999999998642 2110 1126899999999986543
Q ss_pred cccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 113 ~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
.||.|+---.|++........+++.+.+.++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~ 146 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLP 146 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence 7899996655555544444556665555543
No 145
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.14 E-value=8.1e-11 Score=91.81 Aligned_cols=75 Identities=29% Similarity=0.448 Sum_probs=62.5
Q ss_pred CCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-------ceEEEEcccccCcCCCcccEEEEcC
Q 028214 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~~~~~~D~i~~np 121 (212)
|++|||+|||.|.++..+++.|+ .|+|+|+++++++.|++....... ++++.+.|+++.-. +||.|++.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~--~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG--KFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc--ccceeeeHH
Confidence 57899999999999999999875 999999999999999998554432 36677777777654 599999988
Q ss_pred CCCCC
Q 028214 122 PFGTR 126 (212)
Q Consensus 122 py~~~ 126 (212)
.++|.
T Consensus 167 vleHV 171 (282)
T KOG1270|consen 167 VLEHV 171 (282)
T ss_pred HHHHH
Confidence 87765
No 146
>PRK00811 spermidine synthase; Provisional
Probab=99.13 E-value=9.5e-10 Score=89.13 Aligned_cols=102 Identities=14% Similarity=0.249 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc------CCceEEEEcccccCcCC--CcccEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRNLEWR--GHVDTVV 118 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~------~~~v~~~~~d~~~~~~~--~~~D~i~ 118 (212)
.+++||++|||+|.++.++.++ +..+|+++|+|+.+++.|++++... ..+++++.+|+..+... .+||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 5679999999999999999987 4679999999999999999988642 12789999999876542 3899999
Q ss_pred EcC--CCCCCCCCchHHHHHHHHhhcC-ceEEEE
Q 028214 119 MNP--PFGTRKKGVDMDFLSMALKVAS-QAVYSL 149 (212)
Q Consensus 119 ~np--py~~~~~~~~~~~l~~~~~~~~-~~~~~~ 149 (212)
+|. |+.....-....+++.+.+.++ +++++.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 985 4422111123456666666654 445544
No 147
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.13 E-value=1.5e-09 Score=85.40 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=73.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEEcC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNP 121 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~np 121 (212)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+. ++++..+|+.+.+... .||+|+++-
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 367899999999999999998765 37999999999999999999876433 6899999998876543 899999876
Q ss_pred CCCCCCCCchHHHHHHHHhhcC
Q 028214 122 PFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 122 py~~~~~~~~~~~l~~~~~~~~ 143 (212)
.+++.. .....++.+.+.++
T Consensus 130 ~l~~~~--~~~~~l~~~~~~L~ 149 (239)
T PRK00216 130 GLRNVP--DIDKALREMYRVLK 149 (239)
T ss_pred ccccCC--CHHHHHHHHHHhcc
Confidence 655432 23445555555543
No 148
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.13 E-value=4.7e-10 Score=86.03 Aligned_cols=90 Identities=24% Similarity=0.378 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc-Cc-CC-CcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-LE-WR-GHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~-~~-~~-~~~D~i~~nppy~ 124 (212)
++++|||+|||+|.++..++......++|+|+++.+++.++++ +++++++|+.+ .+ .. .+||+|+++.+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 5679999999999999988865555789999999999888653 46788888875 22 22 3899999999998
Q ss_pred CCCCCchHHHHHHHHhhcCce
Q 028214 125 TRKKGVDMDFLSMALKVASQA 145 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~ 145 (212)
+..+ ....+++..+.++..
T Consensus 87 ~~~d--~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 87 ATRN--PEEILDEMLRVGRHA 105 (194)
T ss_pred cCcC--HHHHHHHHHHhCCeE
Confidence 7643 445677777776643
No 149
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.13 E-value=2.9e-10 Score=85.53 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC--CC-cccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW--RG-HVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~D~i~~nppy~ 124 (212)
++.+|||+|||.|.+...+........+|+|+|++.+..|.++ .+.++++|+.+-.. ++ +||+|+++-...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 7899999999999999999875556899999999999888877 57899999987542 23 999999875544
Q ss_pred CCCCCchHHHHHHHHhhcCceEEE
Q 028214 125 TRKKGVDMDFLSMALKVASQAVYS 148 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~ 148 (212)
+.. .....+++.+++++..+..
T Consensus 87 ~~~--~P~~vL~EmlRVgr~~IVs 108 (193)
T PF07021_consen 87 AVR--RPDEVLEEMLRVGRRAIVS 108 (193)
T ss_pred hHh--HHHHHHHHHHHhcCeEEEE
Confidence 332 2235688888888855543
No 150
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.12 E-value=1.9e-09 Score=84.92 Aligned_cols=94 Identities=29% Similarity=0.428 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCc--CCCcccEEEEcCCC
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRGHVDTVVMNPPF 123 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~nppy 123 (212)
..++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..+++...|+.+.+ ...+||+|+++-.+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45788999999999999999988754 8999999999999999998776667888889888775 22489999998777
Q ss_pred CCCCCCchHHHHHHHHhhc
Q 028214 124 GTRKKGVDMDFLSMALKVA 142 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~ 142 (212)
++... ....++.+.+..
T Consensus 125 ~~~~~--~~~~l~~~~~~L 141 (233)
T PRK05134 125 EHVPD--PASFVRACAKLV 141 (233)
T ss_pred hccCC--HHHHHHHHHHHc
Confidence 65432 223445444443
No 151
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=3.3e-10 Score=84.74 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=98.1
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEE-cCCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVM-NPPF 123 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~-nppy 123 (212)
+..++++|||+|+|+|..++.+++.|+..|++.|+++......+.|++.|+.++.+...|... .+..||+++. |-.|
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g--~~~~~Dl~LagDlfy 153 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG--SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC--CCcceeEEEeeceec
Confidence 345899999999999999999999999999999999999999999999999999999999876 2338999886 5555
Q ss_pred CCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHHHhhcCCcceeEEEEEeecCCcccccccceeeeEEEEEEEE
Q 028214 124 GTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRF 202 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (212)
.+......+.+++.+... +.-+++..+.|.++...-.+.+ ..|++|..-.......+++. +|+|
T Consensus 154 ~~~~a~~l~~~~~~l~~~---g~~vlvgdp~R~~lpk~~l~~~----------a~yqvp~~~~~ed~~vkrtt--V~~~ 217 (218)
T COG3897 154 NHTEADRLIPWKDRLAEA---GAAVLVGDPGRAYLPKKRLEFL----------AIYQVPMFRELEDAAVKRTT--VWRF 217 (218)
T ss_pred CchHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCchhhhhhh----------hhccCcccccccCcceeeee--eeec
Confidence 544333444555544332 3333466777766655443322 33455554444444445543 6654
No 152
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.10 E-value=1e-09 Score=88.09 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCcCh----HHHHHHHcC------CCeEEEEeCChHHHHHHHHHHhh------------------------
Q 028214 48 SNKVVADFGCGCGT----LGAAATLLG------ADQVIAIDIDSDSLELASENAAD------------------------ 93 (212)
Q Consensus 48 ~~~~vlDlg~G~G~----~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~~~------------------------ 93 (212)
++.+|+|+|||+|. +++.++... ..+|+|+|+|+.+++.|++.+-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 455555431 24899999999999999986410
Q ss_pred ----cCCceEEEEcccccCcCC-CcccEEEEcCCCCCC
Q 028214 94 ----LELDIDFVQCDIRNLEWR-GHVDTVVMNPPFGTR 126 (212)
Q Consensus 94 ----~~~~v~~~~~d~~~~~~~-~~~D~i~~nppy~~~ 126 (212)
...+++|.++|+.+.+.+ .+||+|++.-.+++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf 216 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF 216 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC
Confidence 001589999999987653 489999996554443
No 153
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.10 E-value=1.5e-09 Score=73.33 Aligned_cols=75 Identities=31% Similarity=0.488 Sum_probs=61.8
Q ss_pred EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC--CCcccEEEEcCCCCC
Q 028214 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVMNPPFGT 125 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~~nppy~~ 125 (212)
+++|+|||+|.++..++.....+++++|+++.++..++++...... +++++.+|+.+... ..+||+|+++++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999988875567999999999999999854443333 78999999998864 338999999999875
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.10 E-value=2.3e-10 Score=92.81 Aligned_cols=73 Identities=30% Similarity=0.466 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC-CcccEEEEc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-GHVDTVVMN 120 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~~D~i~~n 120 (212)
.++++|||+|||+|++++++|+.|+.+|+|+|-+. +.+.|.+.+..|+. .++++++.++++..+ .+.|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence 58999999999999999999999999999999975 66999999999988 589999999998766 499999984
No 155
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.09 E-value=3.7e-11 Score=82.01 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=53.5
Q ss_pred EEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccC---cCCCcccEEEEcCCCCCCC
Q 028214 53 ADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL---EWRGHVDTVVMNPPFGTRK 127 (212)
Q Consensus 53 lDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~---~~~~~~D~i~~nppy~~~~ 127 (212)
||+|||+|.++..+... +..+++++|+|+.+++.++++...... +......+..+. ....+||+|++.-.+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999888865 456899999999999999988887764 344444444333 333489999999888876
Q ss_pred CCchHHHHHHHHhh
Q 028214 128 KGVDMDFLSMALKV 141 (212)
Q Consensus 128 ~~~~~~~l~~~~~~ 141 (212)
.....+++.+.+.
T Consensus 80 -~~~~~~l~~~~~~ 92 (99)
T PF08242_consen 80 -EDIEAVLRNIYRL 92 (99)
T ss_dssp -S-HHHHHHHHTTT
T ss_pred -hhHHHHHHHHHHH
Confidence 2333455554443
No 156
>PRK10742 putative methyltransferase; Provisional
Probab=99.08 E-value=2.3e-09 Score=84.00 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=70.0
Q ss_pred CCCC--EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc------C----CceEEEEcccccCcCCC--
Q 028214 47 VSNK--VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------E----LDIDFVQCDIRNLEWRG-- 112 (212)
Q Consensus 47 ~~~~--~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~----~~v~~~~~d~~~~~~~~-- 112 (212)
.++. +|||+.+|+|..+++++..|+ +|+++|.++.+....+.+++.. + .+++++++|..++....
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 3555 899999999999999999977 5999999999999999988863 2 16889999998876532
Q ss_pred cccEEEEcCCCCCCCCCc
Q 028214 113 HVDTVVMNPPFGTRKKGV 130 (212)
Q Consensus 113 ~~D~i~~nppy~~~~~~~ 130 (212)
+||+|++||||.+..++.
T Consensus 164 ~fDVVYlDPMfp~~~ksa 181 (250)
T PRK10742 164 RPQVVYLDPMFPHKQKSA 181 (250)
T ss_pred CCcEEEECCCCCCCcccc
Confidence 799999999998875544
No 157
>PRK04148 hypothetical protein; Provisional
Probab=99.08 E-value=4.2e-09 Score=75.18 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCcCh-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC--cccEEEE-cC
Q 028214 46 DVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVM-NP 121 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~-~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~D~i~~-np 121 (212)
..++.+++|+|||+|. ++..+++.|. .|+++|+|+.+++.++++ .++++.+|+.+...+. .+|+|++ .|
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 3466899999999996 8888888765 999999999999888777 3789999999877664 8999996 66
Q ss_pred C
Q 028214 122 P 122 (212)
Q Consensus 122 p 122 (212)
|
T Consensus 87 p 87 (134)
T PRK04148 87 P 87 (134)
T ss_pred C
Confidence 5
No 158
>PRK04457 spermidine synthase; Provisional
Probab=99.08 E-value=1.7e-09 Score=86.72 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEcccccCcCC--CcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWR--GHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~--~~~D~i~~npp 122 (212)
++++|||+|||+|.++..+++. +..+++++|+|+.+++.|++++...+ .+++++.+|+.++... .+||+|++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 5679999999999999988865 45689999999999999999986543 2799999998776433 3899999984
Q ss_pred CCCC---CCCchHHHHHHHHhhcC-ceEEE
Q 028214 123 FGTR---KKGVDMDFLSMALKVAS-QAVYS 148 (212)
Q Consensus 123 y~~~---~~~~~~~~l~~~~~~~~-~~~~~ 148 (212)
|+.. ..-....+++.+.+.+. +++++
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 3322 11123577887777654 34443
No 159
>PLN02476 O-methyltransferase
Probab=99.08 E-value=3.8e-09 Score=84.74 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccc
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (212)
....++...... .+.++|||+|+++|..++.+++. + ..+++++|.+++..+.|++|++..|+ +++++.+|+.+
T Consensus 105 ~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 105 DQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 334444444443 36789999999999999999964 2 44799999999999999999999988 79999999977
Q ss_pred CcC-------CCcccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEE
Q 028214 108 LEW-------RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS 148 (212)
Q Consensus 108 ~~~-------~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~ 148 (212)
... ..+||+|+.|++ +.....+++.+++..+ +++.+
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV 225 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIV 225 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEE
Confidence 532 137999999986 4556677777776654 34443
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.07 E-value=2.3e-09 Score=86.46 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC----CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMN 120 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~n 120 (212)
.+.+|||+|||+|.++..++... ...++|+|+|+.+++.|+++.. ++.+.++|+.+++..+ +||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcCCceeEEEEe
Confidence 55789999999999999888642 2379999999999999987642 5789999999887665 89999974
No 161
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=4.1e-09 Score=81.75 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCc--------C-CCccc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--------W-RGHVD 115 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--------~-~~~~D 115 (212)
.++.+|||+|||+|.++..+++.. ...|+|+|+++ + ... .+++++++|+.+.. . ..+||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~----~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPI----VGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCC----CCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999888763 35899999998 1 011 16899999998853 2 23899
Q ss_pred EEEEcCC
Q 028214 116 TVVMNPP 122 (212)
Q Consensus 116 ~i~~npp 122 (212)
+|++|+.
T Consensus 120 ~V~S~~~ 126 (209)
T PRK11188 120 VVMSDMA 126 (209)
T ss_pred EEecCCC
Confidence 9999983
No 162
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.06 E-value=8.5e-10 Score=88.50 Aligned_cols=100 Identities=27% Similarity=0.387 Sum_probs=79.7
Q ss_pred ccccccc-CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCc
Q 028214 19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD 97 (212)
Q Consensus 19 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~ 97 (212)
+...+.| |-..+.++..++..+... +++.|+|+|+|.|.++..++..+ .+++++|+|+..++..++.....+ +
T Consensus 4 ~kk~~gQnFL~~~~~~~~Iv~~~~~~----~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~-~ 77 (262)
T PF00398_consen 4 PKKSLGQNFLVDPNIADKIVDALDLS----EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP-N 77 (262)
T ss_dssp C-CGCTSSEEEHHHHHHHHHHHHTCG----TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS-S
T ss_pred CCCCCCcCeeCCHHHHHHHHHhcCCC----CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc-c
Confidence 4444444 666777777777665433 78999999999999999999886 699999999999999998776332 8
Q ss_pred eEEEEcccccCcCCC----cccEEEEcCCCC
Q 028214 98 IDFVQCDIRNLEWRG----HVDTVVMNPPFG 124 (212)
Q Consensus 98 v~~~~~d~~~~~~~~----~~D~i~~nppy~ 124 (212)
++++++|+.++.... ....|++|.||.
T Consensus 78 ~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 78 VEVINGDFLKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp EEEEES-TTTSCGGGHCSSSEEEEEEEETGT
T ss_pred ceeeecchhccccHHhhcCCceEEEEEeccc
Confidence 999999999988765 567999999984
No 163
>KOG2730 consensus Methylase [General function prediction only]
Probab=99.05 E-value=6.3e-10 Score=84.62 Aligned_cols=100 Identities=29% Similarity=0.348 Sum_probs=80.6
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEE
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF 100 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~ 100 (212)
++...|+..++..+........ ....|+|..||.|+-++..+..++ .|+++|+||--+..|+.|++-.|+ +++|
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEE
Confidence 3345667677666665555442 567899999999999888887755 899999999999999999999998 8999
Q ss_pred EEcccccCcCCC-----cccEEEEcCCCCCC
Q 028214 101 VQCDIRNLEWRG-----HVDTVVMNPPFGTR 126 (212)
Q Consensus 101 ~~~d~~~~~~~~-----~~D~i~~nppy~~~ 126 (212)
++||+++..... .+|+|+..||..-+
T Consensus 148 I~GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 148 ICGDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred EechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 999999876554 45699999998665
No 164
>PTZ00146 fibrillarin; Provisional
Probab=99.04 E-value=8e-09 Score=83.13 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC
Q 028214 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (212)
.+++.++ .-+..+...++++|||+|||+|.++..++.. + ...|+++|+++.+.+.+...++.. .++.++.+|+...
T Consensus 116 Klaa~i~-~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p 193 (293)
T PTZ00146 116 KLAAAII-GGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYP 193 (293)
T ss_pred HHHHHHH-CCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccCh
Confidence 3444443 3344445568889999999999999999976 2 458999999987665444443322 2688999998653
Q ss_pred c----CCCcccEEEEcCC
Q 028214 109 E----WRGHVDTVVMNPP 122 (212)
Q Consensus 109 ~----~~~~~D~i~~npp 122 (212)
. ....+|+|++|..
T Consensus 194 ~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhhcccCCCCEEEEeCC
Confidence 1 1127999999875
No 165
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.02 E-value=8.9e-09 Score=84.23 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccC-cCCCc-----ccEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL-EWRGH-----VDTV 117 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~~-~~~~~-----~D~i 117 (212)
++.+|||+|||+|..+..+++.. ..+++++|+|++|++.+++++... +.++.++++|+.+. ..... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 55789999999999999988763 358999999999999999887653 23678899998763 22222 3356
Q ss_pred EEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 118 VMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 118 ~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
+++.+++.........+++++.+.++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~ 168 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLG 168 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcC
Confidence 66667776655555677887776665
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.02 E-value=6.7e-09 Score=80.09 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccc
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (212)
....++...... .+.++|||+||++|..++.+++. + ..+++.+|+++...+.|+++++..|. +++++.+|+.+
T Consensus 32 ~~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 32 ETGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred HHHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 344455555543 37789999999999999999975 2 46999999999999999999999887 79999999987
Q ss_pred CcCC-------CcccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEec
Q 028214 108 LEWR-------GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 151 (212)
Q Consensus 108 ~~~~-------~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 151 (212)
.... .+||+|+.|-. +.....+++.+.+..+ +++.++.+
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 5331 27999999874 5667788888877765 45555444
No 167
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.99 E-value=2e-08 Score=78.16 Aligned_cols=94 Identities=24% Similarity=0.382 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCC--CeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy 123 (212)
.++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. ...++++..+|+.+.+... +||+|+++-.+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 3778999999999999999987654 489999999999999998876 2226889999998876543 89999987666
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
++.. .....++.+.+.++
T Consensus 117 ~~~~--~~~~~l~~~~~~L~ 134 (223)
T TIGR01934 117 RNVT--DIQKALREMYRVLK 134 (223)
T ss_pred CCcc--cHHHHHHHHHHHcC
Confidence 5542 23345555555543
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.99 E-value=1.1e-09 Score=93.67 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=58.8
Q ss_pred CCEEEEEcCCcChHHHHHHHcC-----CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcC
Q 028214 49 NKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~np 121 (212)
+..|+|+|||+|.++..+++.+ ..+|+++|.|+.++..+++.+..++. +|+++++|++++..+.++|+||+-+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 6789999999999988887664 56999999999999888777666665 8999999999999888999999865
Q ss_pred C
Q 028214 122 P 122 (212)
Q Consensus 122 p 122 (212)
.
T Consensus 267 L 267 (448)
T PF05185_consen 267 L 267 (448)
T ss_dssp -
T ss_pred c
Confidence 4
No 169
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.99 E-value=1.2e-08 Score=83.65 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
.++.++||+|||+|.+++.+++. +..+++++|. +.+++.+++++...+. +++++.+|+.+.+.+ .+|+|++.-..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~l 225 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRIL 225 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhh
Confidence 46689999999999999999976 4468999998 7899999999988876 699999999865444 47988765555
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
|...+......++++.+..+
T Consensus 226 h~~~~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMR 245 (306)
T ss_pred hcCChHHHHHHHHHHHHhcC
Confidence 54433333456666655543
No 170
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.98 E-value=2.7e-09 Score=86.01 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=48.9
Q ss_pred CCEEEEEcCCcCh-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc-CC--ceEEEEcccccC----cCC--CcccEEE
Q 028214 49 NKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRNL----EWR--GHVDTVV 118 (212)
Q Consensus 49 ~~~vlDlg~G~G~-~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~v~~~~~d~~~~----~~~--~~~D~i~ 118 (212)
.-++||+|+|... ..+..++....+++|+|+|+.+++.|++|++.| ++ +|+++...-... ... +.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 4589999999875 466666555679999999999999999999999 55 688876543221 111 2899999
Q ss_pred EcCCCCCCCCC
Q 028214 119 MNPPFGTRKKG 129 (212)
Q Consensus 119 ~nppy~~~~~~ 129 (212)
|||||+....+
T Consensus 183 CNPPFy~s~~e 193 (299)
T PF05971_consen 183 CNPPFYSSQEE 193 (299)
T ss_dssp E-----SS---
T ss_pred cCCccccChhh
Confidence 99999987443
No 171
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.98 E-value=1.7e-08 Score=81.30 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccCcCC--CcccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWR--GHVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~--~~~D~i~~ 119 (212)
.+++||++|||+|.++..+++.. ..+++++|+|+.+++.+++++...+ .+++++.+|..++... .+||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999999888775 5689999999999999999875432 2688888998765432 38999999
Q ss_pred cCCCCCCCCCc--hHHHHHHHHhhcC-ceEEEE
Q 028214 120 NPPFGTRKKGV--DMDFLSMALKVAS-QAVYSL 149 (212)
Q Consensus 120 nppy~~~~~~~--~~~~l~~~~~~~~-~~~~~~ 149 (212)
|++........ ...+++.+.+.+. +++++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 98854332211 3466666666654 344443
No 172
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.97 E-value=2.1e-08 Score=78.45 Aligned_cols=94 Identities=23% Similarity=0.334 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC--CcccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~--~~~D~i~~nppy 123 (212)
..+.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+. ++++..+|+.+.+.. .+||+|+++..+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3578999999999999998888655 799999999999999999887776 688999998877654 389999998776
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
++.. ....+++.+.+..+
T Consensus 123 ~~~~--~~~~~l~~~~~~L~ 140 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLK 140 (224)
T ss_pred HhCC--CHHHHHHHHHHhcC
Confidence 6543 22345555554443
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=3.6e-09 Score=82.48 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=75.6
Q ss_pred HHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh-------------hcCCceEEEEccc
Q 028214 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------------DLELDIDFVQCDI 105 (212)
Q Consensus 39 ~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~-------------~~~~~v~~~~~d~ 105 (212)
.....+...++.+||++|||.|.-+..++..|. +|+|+|+++.+++.+.+... ..+.++++.++|+
T Consensus 34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~ 112 (226)
T PRK13256 34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI 112 (226)
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC
Confidence 333333333567999999999999999999988 79999999999999855210 1123789999999
Q ss_pred ccCcCC----CcccEEEEcCCCCCCCCCchHHHHHHHHhhc
Q 028214 106 RNLEWR----GHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 142 (212)
Q Consensus 106 ~~~~~~----~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~ 142 (212)
++++.. .+||+|+---.|+.........+.+...+..
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL 153 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC 153 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh
Confidence 998642 2799998766776665555556666555543
No 174
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.95 E-value=7.4e-10 Score=89.39 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=81.8
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHH-------HHHHHHhhcCC
Q 028214 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE-------LASENAADLEL 96 (212)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~ 96 (212)
+.|..+-.+.+++-...+......+|+.|.|++.|||++.+.++..|+ .|+|.|||-.++. ..+.|+++.|.
T Consensus 184 R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~ 262 (421)
T KOG2671|consen 184 RCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGS 262 (421)
T ss_pred ccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCC
Confidence 446666666777666666665567899999999999999999999877 8999999988876 45678888775
Q ss_pred ---ceEEEEcccccCcCCC--cccEEEEcCCCCCC
Q 028214 97 ---DIDFVQCDIRNLEWRG--HVDTVVMNPPFGTR 126 (212)
Q Consensus 97 ---~v~~~~~d~~~~~~~~--~~D~i~~nppy~~~ 126 (212)
=..+..+|+.+.+... .||.|+|||||...
T Consensus 263 ~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVR 297 (421)
T KOG2671|consen 263 SSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVR 297 (421)
T ss_pred cchhhheeeecccCcchhhcceeeEEEeCCCcchh
Confidence 3567889988877654 89999999999875
No 175
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.94 E-value=3.3e-09 Score=79.84 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC--C--ceEEEEcccccCc-----CCCccc
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE--L--DIDFVQCDIRNLE-----WRGHVD 115 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~--~--~v~~~~~d~~~~~-----~~~~~D 115 (212)
..++.+|||+|||+|..++.++.. +..+|+..|.++ .++.++.|++.|+ . ++.+...|+.+.. ...+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 457899999999999999999988 677999999998 9999999999886 2 7888888876532 122799
Q ss_pred EEEE-cCCCC
Q 028214 116 TVVM-NPPFG 124 (212)
Q Consensus 116 ~i~~-nppy~ 124 (212)
+|++ |--|.
T Consensus 122 ~IlasDv~Y~ 131 (173)
T PF10294_consen 122 VILASDVLYD 131 (173)
T ss_dssp EEEEES--S-
T ss_pred EEEEecccch
Confidence 9885 55554
No 176
>PRK03612 spermidine synthase; Provisional
Probab=98.94 E-value=2.4e-08 Score=87.41 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCC-CeEEEEeCChHHHHHHHHHH--hhc------CCceEEEEcccccCcCC--CcccE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENA--ADL------ELDIDFVQCDIRNLEWR--GHVDT 116 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~--~~~------~~~v~~~~~d~~~~~~~--~~~D~ 116 (212)
++++|||+|||+|..+.++.+++. .+|+++|+|+++++.++++. ... +.+++++.+|..++... .+||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 568999999999999999998754 79999999999999999853 211 12789999999886432 38999
Q ss_pred EEEcCCCCCCC---CCchHHHHHHHHhhcC-ceEEEE
Q 028214 117 VVMNPPFGTRK---KGVDMDFLSMALKVAS-QAVYSL 149 (212)
Q Consensus 117 i~~nppy~~~~---~~~~~~~l~~~~~~~~-~~~~~~ 149 (212)
|++|+|..... .-...++++.+.+.++ ++++++
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence 99998865421 1122356766666655 344443
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.93 E-value=3.6e-08 Score=76.28 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEE-ccc
Q 028214 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQ-CDI 105 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~-~d~ 105 (212)
+..-..+..+... ..++++||+|++.|..++.++.. + ..+++.+|.|++..+.|++|++..|. +++++. +|.
T Consensus 45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 4444455555543 47889999999999999999964 3 45899999999999999999999998 588888 588
Q ss_pred ccCcCC---CcccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEe
Q 028214 106 RNLEWR---GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH 150 (212)
Q Consensus 106 ~~~~~~---~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 150 (212)
.+.... .+||+|+.|- .+.....+++.+.+..+ +++.+..
T Consensus 122 l~~l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 776654 3999999975 36677788888887765 4444433
No 178
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.91 E-value=1.6e-08 Score=74.58 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCc-CCCcccEEEEcCCCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE-WRGHVDTVVMNPPFGT 125 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~nppy~~ 125 (212)
.++.+|||+|||+|.++..++..+. +++|+|+++.+++. . +......+..... ...+||+|+++-.+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h--hhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 4788999999999999999988877 99999999999988 1 2222222222222 2338999999999888
Q ss_pred CCCCchHHHHHHHHhhcC
Q 028214 126 RKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~ 143 (212)
..+ ...+++.+.+..+
T Consensus 91 ~~d--~~~~l~~l~~~Lk 106 (161)
T PF13489_consen 91 LPD--PEEFLKELSRLLK 106 (161)
T ss_dssp SSH--HHHHHHHHHHCEE
T ss_pred ccc--HHHHHHHHHHhcC
Confidence 752 4566777776655
No 179
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.89 E-value=2.4e-07 Score=72.16 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=78.8
Q ss_pred HHHHHHhccCCCCCCccccccc-CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHH-cCCCeEEEEeCCh
Q 028214 4 KQLESVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDS 81 (212)
Q Consensus 4 ~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~-~~~~~v~~~D~~~ 81 (212)
+.+.+.+ +..+.+...+.| +.|+.....+.+.. ... ..+.+++||=+|=.. ..|+.++. ...++|+.+|+|+
T Consensus 4 ~~~~~i~---~~RP~~~~~~DQ~~~T~eT~~~Ra~~~-~~~-gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDe 77 (243)
T PF01861_consen 4 EKFSEIV---KNRPEPDVELDQGYATPETTLRRAALM-AER-GDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDE 77 (243)
T ss_dssp HHHHHHH---TT-----GGGT---B-HHHHHHHHHHH-HHT-T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-H
T ss_pred HHHHHHH---HcCCCCccccccccccHHHHHHHHHHH-Hhc-CcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCH
Confidence 3444444 456677788888 56665555554433 332 567899999998443 34455543 3467999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcccccCcCCC---cccEEEEcCCCCCCCCCchHHHHHHHHhhcC---ceEEEEecCc
Q 028214 82 DSLELASENAADLELDIDFVQCDIRNLEWRG---HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS---QAVYSLHKTS 153 (212)
Q Consensus 82 ~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~ 153 (212)
..++..++.++..|.+++.++.|+.+..++. +||++++||||.. .-...|+.+....++ +.+|+.+...
T Consensus 78 Rll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~---~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 78 RLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP---EGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp HHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SSH---HHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred HHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCCH---HHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 9999999999999989999999999877664 8999999999974 334467887776654 3667776554
No 180
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.86 E-value=1e-08 Score=83.06 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=68.9
Q ss_pred HHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC---C
Q 028214 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---G 112 (212)
Q Consensus 38 ~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---~ 112 (212)
......+...++..++|.+||.|..+..+++.. ..+|+|+|.|+.+++.|++++.. ..+++++++|+.++... .
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcC
Confidence 333444344577899999999999999999773 36899999999999999988865 33799999999876421 1
Q ss_pred --cccEEEEcCCCCCC
Q 028214 113 --HVDTVVMNPPFGTR 126 (212)
Q Consensus 113 --~~D~i~~nppy~~~ 126 (212)
++|.|++|.-....
T Consensus 88 ~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 88 LGKVDGILLDLGVSSP 103 (296)
T ss_pred CCccCEEEECCCcccc
Confidence 69999998766443
No 181
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.85 E-value=5.4e-08 Score=75.85 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHH-HHhhc-----C------C-ceEEEEcccccCcCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE-NAADL-----E------L-DIDFVQCDIRNLEWR 111 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~-~~~~~-----~------~-~v~~~~~d~~~~~~~ 111 (212)
...++.+||.+|||.|.....++.+|. +|+|+|+++.+++.+.+ +.... + . ++++.++|++++...
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 344677999999999999999999877 89999999999999833 32110 0 1 579999999998877
Q ss_pred C--cccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 112 G--HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 112 ~--~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
. +||+|+=--.|+.........+.+...+..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~ 146 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK 146 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 6 7999997777777766666777777776654
No 182
>PRK01581 speE spermidine synthase; Validated
Probab=98.84 E-value=6.5e-08 Score=80.04 Aligned_cols=105 Identities=12% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHH--h---h---cCCceEEEEcccccCcCC--Cccc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENA--A---D---LELDIDFVQCDIRNLEWR--GHVD 115 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~--~---~---~~~~v~~~~~d~~~~~~~--~~~D 115 (212)
..+++||++|||+|..+.++.+++ ..+|+++|+|+.+++.|++.. . . ...+++++.+|+.++... .+||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 356799999999999999999874 469999999999999999621 1 1 122899999999986543 2899
Q ss_pred EEEEcCCCCCC---CCCchHHHHHHHHhhcC-ceEEEEec
Q 028214 116 TVVMNPPFGTR---KKGVDMDFLSMALKVAS-QAVYSLHK 151 (212)
Q Consensus 116 ~i~~nppy~~~---~~~~~~~~l~~~~~~~~-~~~~~~~~ 151 (212)
+|++|+|-... ..-....+++.+.+.+. ++++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99999864221 11122456777776665 45555543
No 183
>PLN02366 spermidine synthase
Probab=98.84 E-value=1.2e-07 Score=77.67 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccCcC---CCcccEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEW---RGHVDTVV 118 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~---~~~~D~i~ 118 (212)
.+++||++|||.|....++++++ ..+|+.+|+|+.+++.|++.+...+ .+++++.+|+..+.. ..+||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 57899999999999999999874 4689999999999999999876421 279999999876543 23799999
Q ss_pred EcCCCCCCCC--CchHHHHHHHHhhcC-ceEEEE
Q 028214 119 MNPPFGTRKK--GVDMDFLSMALKVAS-QAVYSL 149 (212)
Q Consensus 119 ~nppy~~~~~--~~~~~~l~~~~~~~~-~~~~~~ 149 (212)
+|.+-..... -....+++.+.+.+. ++++..
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9875432211 123466777766665 455543
No 184
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=9.2e-08 Score=72.43 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=67.9
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceE-EEEcccccCc-CCC-cccEEEEcCCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DID-FVQCDIRNLE-WRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~-~~~~d~~~~~-~~~-~~D~i~~nppy~~ 125 (212)
.-+|++|||+|.---+.-..+...|+++|.++.|-+.+.+.+..+.. +++ |..++.++++ ..+ ++|.|++......
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 35899999999866555544566999999999999999998887754 676 9999999998 333 9999998665543
Q ss_pred CCCCchHHHHHHHHhhcC
Q 028214 126 RKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~ 143 (212)
. ......+++..++++
T Consensus 158 v--e~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 158 V--EDPVKQLNEVRRLLR 173 (252)
T ss_pred c--CCHHHHHHHHHHhcC
Confidence 3 233344554444443
No 185
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.82 E-value=7.1e-09 Score=79.75 Aligned_cols=108 Identities=21% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCcCC--C-cccEEEE
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWR--G-HVDTVVM 119 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~--~-~~D~i~~ 119 (212)
..++.+|||.+.|-|..+++++++|+..|+.+|.|++.++.|..|-=+.+. .++++.||+.++... + +||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 447899999999999999999999988999999999999999887654443 679999999987654 3 8999999
Q ss_pred cCCCCCCCCCc-hHHHHHHHHhhcC--ceEEEEecCc
Q 028214 120 NPPFGTRKKGV-DMDFLSMALKVAS--QAVYSLHKTS 153 (212)
Q Consensus 120 nppy~~~~~~~-~~~~l~~~~~~~~--~~~~~~~~~~ 153 (212)
|||=....... ...+.++..++++ +.+|.....+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 99943321122 2345566666653 3555544443
No 186
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.82 E-value=1.5e-07 Score=71.83 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCc---------CCCccc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE---------WRGHVD 115 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~---------~~~~~D 115 (212)
.++.+|||+|||+|.++..++.. +..+|+++|+++.+ .. .+++++++|+.+.. ...+||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--ENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--CCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 47889999999999999888865 34579999999854 11 15788888987642 223799
Q ss_pred EEEEcCC
Q 028214 116 TVVMNPP 122 (212)
Q Consensus 116 ~i~~npp 122 (212)
+|++|++
T Consensus 101 ~V~~~~~ 107 (188)
T TIGR00438 101 VVMSDAA 107 (188)
T ss_pred EEEcCCC
Confidence 9999853
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.81 E-value=9.8e-08 Score=75.61 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccc
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (212)
....++...... .+.+++||+|+++|..++.+++. + ..+++.+|.+++..+.|+++++..|. +|+++.+|+.+
T Consensus 66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 334445444443 36789999999999999988864 2 45899999999999999999999986 89999999987
Q ss_pred CcCC--------CcccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEE
Q 028214 108 LEWR--------GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS 148 (212)
Q Consensus 108 ~~~~--------~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~ 148 (212)
.... .+||+|+.|-- +.....+++.++...+ +++++
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIG 187 (247)
T ss_pred HHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEE
Confidence 5432 38999999853 4556677777776665 34443
No 188
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.78 E-value=9.6e-09 Score=76.50 Aligned_cols=72 Identities=31% Similarity=0.438 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~np 121 (212)
..+.+.|+|+|+|.++..++.. +.+|+++|.||.....|.+|+.-.|. +++++.+|+.+..++ ..|+|+|-.
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe-~ADvvicEm 104 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE-NADVVICEM 104 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc-ccceeHHHH
Confidence 3478999999999999999986 77999999999999999999987777 899999999998874 789998743
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.75 E-value=2.2e-07 Score=80.03 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=69.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC--CcccEEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVM 119 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~--~~~D~i~~ 119 (212)
...++.+|||++||.|.-+..++.. +...++++|+++..++.+++|++..|+ ++.+.+.|...+... ..||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 3458899999999999998888865 245899999999999999999999998 788999998866432 37999999
Q ss_pred cCCCCCC
Q 028214 120 NPPFGTR 126 (212)
Q Consensus 120 nppy~~~ 126 (212)
|+|+.-.
T Consensus 190 DaPCSG~ 196 (470)
T PRK11933 190 DAPCSGE 196 (470)
T ss_pred cCCCCCC
Confidence 9998743
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.75 E-value=5.3e-07 Score=68.37 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=97.0
Q ss_pred HHHHHHhccCCCCCCcccccccCCCChHHHHHHHHHHHhhcCCCC--CCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCC
Q 028214 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAATLL-GADQVIAIDID 80 (212)
Q Consensus 4 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~ 80 (212)
+.|+.+++.+..|+. ..++-...+...+....+.+.+..+...+ +.+++|+|+|.|.-++.++-. +..+++.+|.+
T Consensus 3 ~~l~~y~~lL~~~N~-~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~ 81 (184)
T PF02527_consen 3 EKLEQYLELLLEWNK-KINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV 81 (184)
T ss_dssp HHHHHHHHHHHHHHH-CSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCc-eeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence 345555555554432 22232233444454443334333333322 237999999999999999844 56689999999
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcCCCCCCCCCchH-HHHHHHHhhcC-ceEEEEecCchHHH
Q 028214 81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDM-DFLSMALKVAS-QAVYSLHKTSTREH 157 (212)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~ 157 (212)
..-+.+.+.-....+. |++++++.+++.....+||+|++= .-... ..+..+....+ ++.++.++......
T Consensus 82 ~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aR-------Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~ 154 (184)
T PF02527_consen 82 GKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTAR-------AVAPLDKLLELARPLLKPGGRLLAYKGPDAEE 154 (184)
T ss_dssp HHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEE-------SSSSHHHHHHHHGGGEEEEEEEEEEESS--HH
T ss_pred chHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEee-------hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHH
Confidence 9999999999998888 799999999993334499999983 22333 34444444333 45555555443333
Q ss_pred HHHHHHhhcCCcceeEEEEEeecCC
Q 028214 158 VKKAALRDFNASSAEVLCELRYDVP 182 (212)
Q Consensus 158 ~~~~~~r~l~~~~~~~~~~~~~~~~ 182 (212)
-...+.+.+...+.....-..+..|
T Consensus 155 El~~~~~~~~~~~~~~~~v~~~~~~ 179 (184)
T PF02527_consen 155 ELEEAKKAWKKLGLKVLSVPEFELP 179 (184)
T ss_dssp HHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred HHHHHHhHHHHhCCEEeeeccccCC
Confidence 3333334454334444443333333
No 191
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.74 E-value=3.9e-07 Score=69.90 Aligned_cols=112 Identities=22% Similarity=0.279 Sum_probs=77.6
Q ss_pred EEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCc----CCCcccEEEEcCCCC
Q 028214 51 VVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE----WRGHVDTVVMNPPFG 124 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~----~~~~~D~i~~nppy~ 124 (212)
.+||+|||.|.+.+.+|.. +...++|+|+....+..+...+...+. |+.++++|+..+. .+.++|.|+.+-|=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999999999965 567999999999999999999988887 9999999988732 334899888776644
Q ss_pred CC------CCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHH
Q 028214 125 TR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 125 ~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
+. +.-....+++...+.++.+..+.+.+....+.....
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~ 143 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWML 143 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHH
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 43 233556777777776654445555555544444433
No 192
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.73 E-value=1e-07 Score=69.80 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=89.4
Q ss_pred CCCCCcccc-cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHH
Q 028214 14 EQFSNPKVE-LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASEN 90 (212)
Q Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~ 90 (212)
+.|-....+ ..-.|++...+..|....... .+.-|||+|.|||.++..+.+++ ...++++|.|++-.....+.
T Consensus 17 k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pe----sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~ 92 (194)
T COG3963 17 KGWIDNPRTVGAILPSSSILARKMASVIDPE----SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL 92 (194)
T ss_pred HHHhcCCceeeeecCCcHHHHHHHHhccCcc----cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh
Confidence 344333334 444788888888887766654 78899999999999999999886 46899999999999888887
Q ss_pred HhhcCCceEEEEcccccCc--CC---C-cccEEEEcCCCCCCCCCchHHHHHHHHhh
Q 028214 91 AADLELDIDFVQCDIRNLE--WR---G-HVDTVVMNPPFGTRKKGVDMDFLSMALKV 141 (212)
Q Consensus 91 ~~~~~~~v~~~~~d~~~~~--~~---~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~ 141 (212)
.. .+++++||+.++. .. . .||.|++..|+-...-......++..+..
T Consensus 93 ~p----~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~r 145 (194)
T COG3963 93 YP----GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYR 145 (194)
T ss_pred CC----CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHh
Confidence 66 3568999988775 11 2 79999999998665544555566655543
No 193
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.71 E-value=2.3e-07 Score=72.63 Aligned_cols=51 Identities=33% Similarity=0.468 Sum_probs=40.9
Q ss_pred HHHHHHhhcC-CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHH
Q 028214 36 MLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (212)
Q Consensus 36 ~l~~~~~~~~-~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~ 86 (212)
-+..+...++ ..+++++||+|||+|.++..+++.|+.+|+|+|+++.++..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3444444433 25788999999999999999999888899999999977765
No 194
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=8.8e-07 Score=68.44 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=104.0
Q ss_pred HHHHHHhccCCCCCCcccccccCCCChHHHHHHHHHHHhhcCCCC--CCEEEEEcCCcChHHHHHH-HcCCCeEEEEeCC
Q 028214 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAAT-LLGADQVIAIDID 80 (212)
Q Consensus 4 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~vlDlg~G~G~~~~~~~-~~~~~~v~~~D~~ 80 (212)
+.++.|.+.+..|++ ..++-...+...+-...+.+.+....... +++++|+|+|.|.-++.+| ..+..+|+-+|.+
T Consensus 22 ~~l~~Y~~lL~~wN~-~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~ 100 (215)
T COG0357 22 EKLEAYVELLLKWNK-AYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESL 100 (215)
T ss_pred HHHHHHHHHHHHhhH-hcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccC
Confidence 445555555555544 22333333444444443333333323333 6899999999999999988 4455679999999
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCc-ccEEEEcCCCCCCCCCchHHHHHHHH-hhcCc-eEEE-EecCchH
Q 028214 81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRGH-VDTVVMNPPFGTRKKGVDMDFLSMAL-KVASQ-AVYS-LHKTSTR 155 (212)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~-~D~i~~nppy~~~~~~~~~~~l~~~~-~~~~~-~~~~-~~~~~~~ 155 (212)
..-+.+.+.-....+. |++++++.++++..... ||+|.+ +.-+.+..+.+.. ...+. +.++ .......
T Consensus 101 ~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~ 173 (215)
T COG0357 101 GKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGK 173 (215)
T ss_pred chHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhh
Confidence 9999999999998888 69999999999987656 999998 3333444333333 22222 2221 1233333
Q ss_pred HHHHHHHHhhcCCcceeEEEEEeecCCcc
Q 028214 156 EHVKKAALRDFNASSAEVLCELRYDVPQL 184 (212)
Q Consensus 156 ~~~~~~~~r~l~~~~~~~~~~~~~~~~~~ 184 (212)
.+..+.- +.....++.+.....+.+|..
T Consensus 174 ~e~~e~~-~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 174 DELPEAE-KAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred hhHHHHH-HHHHhhcCcEEEEEEeecCCC
Confidence 3333332 333324555555555666654
No 195
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.64 E-value=1.5e-07 Score=72.87 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=61.8
Q ss_pred EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEEcCCCCCCC
Q 028214 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRK 127 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~~ 127 (212)
.++|+|||+|..++.++.+ .++|+|+|+++.|++.|++.....-. .......+..++...+ +.|+|++---+|+..
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 8999999999888888887 66999999999999999876654322 2344445555554333 999999876666653
Q ss_pred CCchHHHHHHHHhhc
Q 028214 128 KGVDMDFLSMALKVA 142 (212)
Q Consensus 128 ~~~~~~~l~~~~~~~ 142 (212)
- .++.+.+.+++
T Consensus 115 l---e~fy~~~~rvL 126 (261)
T KOG3010|consen 115 L---ERFYKEAYRVL 126 (261)
T ss_pred h---HHHHHHHHHHc
Confidence 2 23444444444
No 196
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=6.7e-07 Score=69.36 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC---------------------------
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--------------------------- 96 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--------------------------- 96 (212)
....++.+||+||.+|.+++.+++. ++..++|+|||+..++.|+++++....
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4457889999999999999999965 677899999999999999999864311
Q ss_pred ----------------ceEEEEcccccCcCCCcccEEEEcCCCCCC----CCCchHHHHHHHHhhcCceEEEEecCchHH
Q 028214 97 ----------------DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR----KKGVDMDFLSMALKVASQAVYSLHKTSTRE 156 (212)
Q Consensus 97 ----------------~v~~~~~d~~~~~~~~~~D~i~~nppy~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (212)
|..+-..|+.+.. ...||+|+|-..=.|. .+.-...++.++.+.+..+.++++.|-...
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 1111122222111 1278888874432222 122334677777777776667777775544
Q ss_pred HHHHHH
Q 028214 157 HVKKAA 162 (212)
Q Consensus 157 ~~~~~~ 162 (212)
-....+
T Consensus 214 sY~kaa 219 (288)
T KOG2899|consen 214 SYKKAA 219 (288)
T ss_pred HHHHHH
Confidence 444434
No 197
>PLN02823 spermine synthase
Probab=98.60 E-value=2.2e-06 Score=70.98 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccCcCCC--cccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRG--HVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~--~~D~i~~ 119 (212)
.+++||.+|+|.|..+.++.++ +..+|+.+|+|+.+++.|++.+..++ .+++++.+|...+.... +||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999999886 35689999999999999999886432 27999999999876433 8999999
Q ss_pred cCCCCCCCCC-----chHHHHH-HHHhhcC-ceEEEE
Q 028214 120 NPPFGTRKKG-----VDMDFLS-MALKVAS-QAVYSL 149 (212)
Q Consensus 120 nppy~~~~~~-----~~~~~l~-~~~~~~~-~~~~~~ 149 (212)
|.+- ....+ ....+++ .+.+.+. +++++.
T Consensus 183 D~~d-p~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 183 DLAD-PVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred cCCC-ccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 9642 11111 1345665 5555554 455543
No 198
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.56 E-value=2.9e-07 Score=70.45 Aligned_cols=90 Identities=29% Similarity=0.422 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhcCCC--CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc-C
Q 028214 32 IASRMLYTAENSFGDV--SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-L 108 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~--~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~-~ 108 (212)
+.+.+...+...+... ...-|||+|||+|..+..+...| -..+|+|+|+.|++.|.+.- . .-.++.+|.-. +
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e--~--egdlil~DMG~Gl 106 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERE--L--EGDLILCDMGEGL 106 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhh--h--hcCeeeeecCCCC
Confidence 3455555555443322 35689999999999999988876 48999999999999998732 1 24677777654 3
Q ss_pred cCCC-cccEEEEcCCCCCC
Q 028214 109 EWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 109 ~~~~-~~D~i~~nppy~~~ 126 (212)
++.. .||-+++-....+.
T Consensus 107 pfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCCCccceEEEeeeeeee
Confidence 3333 89988865444443
No 199
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6.7e-06 Score=64.93 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC---cccEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG---HVDTV 117 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~---~~D~i 117 (212)
...++.+|||-|.|+|+++-++++. +-.+++..|..+...+.|.+-++..++ ++++.+.|+-...+.. .+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 4568999999999999999999976 346899999999999999999998887 8999999987765543 89999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHH
Q 028214 118 VMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 118 ~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
+.|.|= +....+.+..+++.. +.++++-++-.+.+...+
T Consensus 182 FLDlPa----Pw~AiPha~~~lk~~--g~r~csFSPCIEQvqrtc 220 (314)
T KOG2915|consen 182 FLDLPA----PWEAIPHAAKILKDE--GGRLCSFSPCIEQVQRTC 220 (314)
T ss_pred EEcCCC----hhhhhhhhHHHhhhc--CceEEeccHHHHHHHHHH
Confidence 999993 233344444444333 346667666667666555
No 200
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.53 E-value=2e-06 Score=69.44 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-------ceEEEEcccccCc------CCC-c
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLE------WRG-H 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~------~~~-~ 113 (212)
+++.++|+|||-|..++..-+.+...++|+||.+.+++.|+++.+.... .+.|+.+|..... +.+ +
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 6788999999999999999888888999999999999999998875422 4788999977432 223 5
Q ss_pred ccEEEEcCCCCCC--CCCchHHHHHHHHhhcC-ceEEEEecCchHHHHHHHH
Q 028214 114 VDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 114 ~D~i~~nppy~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (212)
||+|-|--.+|.. +.......+..+.+.++ +++|+-.-|.. ..+....
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds-d~Ii~rl 247 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS-DVIIKRL 247 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH-HHHHHHH
Confidence 9999987777765 33344456666666655 45555555554 3443333
No 201
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.52 E-value=4.6e-06 Score=64.36 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHhhcCCCCCCEEEEEcCCcChHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHh-------hcCC---ceEEEEcccccC
Q 028214 40 AENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAA-------DLEL---DIDFVQCDIRNL 108 (212)
Q Consensus 40 ~~~~~~~~~~~~vlDlg~G~G~~~~~~~-~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~---~v~~~~~d~~~~ 108 (212)
....++..+++..+|+|||.|...+.++ ..+..+++|+|+.+...+.|+...+ ..+. .+++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 3344445578999999999999887777 4467779999999999888765443 2333 688899998875
Q ss_pred cCCC----cccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEec
Q 028214 109 EWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 151 (212)
Q Consensus 109 ~~~~----~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 151 (212)
.... ..|+|++|--.. +......+.+.+...+ +..+++..
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F---~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCF---DPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred HhHhhhhcCCCEEEEecccc---CHHHHHHHHHHHhcCCCCCEEEECC
Confidence 4321 689999985422 1123344454444444 33334433
No 202
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.52 E-value=2.8e-06 Score=66.48 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=86.8
Q ss_pred CEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC---CC-cccEEEEcCCC
Q 028214 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW---RG-HVDTVVMNPPF 123 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~---~~-~~D~i~~nppy 123 (212)
..+||+|||.|.+.+.+|.. +...++|+|+....+..|.+.+...++ |+.++++|+..+.. ++ +.|-|+.|=|=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999966 566899999999999999999999999 99999999886543 33 78888877664
Q ss_pred CCC------CCCchHHHHHHHHhhcCceEEEEecCchHHHHHH
Q 028214 124 GTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK 160 (212)
Q Consensus 124 ~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (212)
-|. +.-....+++...+.++.+..+.+.+....++..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 443 3335567888888777655566666666655555
No 203
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.50 E-value=5.3e-07 Score=78.40 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=77.2
Q ss_pred cccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C----CCeEEEEeCChHHHHHHHHHHhhcC
Q 028214 21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G----ADQVIAIDIDSDSLELASENAADLE 95 (212)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~----~~~v~~~D~~~~~~~~a~~~~~~~~ 95 (212)
....+|.||..+..-++..+.. .+..+|+|+.||+|.+.+.+.+. + ....+|.|+++..+..|+.|+-.++
T Consensus 163 k~~GEfyTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 163 KEAGEFYTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CCCCccCChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 4457888988777666655443 24559999999999988777754 1 2568999999999999999998888
Q ss_pred Cc--eEEEEcccccCcCC----C--cccEEEEcCCCC
Q 028214 96 LD--IDFVQCDIRNLEWR----G--HVDTVVMNPPFG 124 (212)
Q Consensus 96 ~~--v~~~~~d~~~~~~~----~--~~D~i~~nppy~ 124 (212)
.+ +...++|...-+.. . .||+|++||||.
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCC
Confidence 74 56677776655433 2 799999999997
No 204
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.49 E-value=2.3e-06 Score=65.27 Aligned_cols=100 Identities=26% Similarity=0.267 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHH-c--CCCeEEEEeCChHHHHHHHHHHhhc-----------
Q 028214 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-L--GADQVIAIDIDSDSLELASENAADL----------- 94 (212)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~-~--~~~~v~~~D~~~~~~~~a~~~~~~~----------- 94 (212)
|-+++.+++......++...+-++.|++||+|.+...+.. + .-..|+|.|+|+++++.|++|+...
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 4577888998888877666677999999999987555553 2 2458999999999999999998310
Q ss_pred ------------------------------C-C-ceEEEEcccccCcC------CCcccEEEEcCCCCCCCC
Q 028214 95 ------------------------------E-L-DIDFVQCDIRNLEW------RGHVDTVVMNPPFGTRKK 128 (212)
Q Consensus 95 ------------------------------~-~-~v~~~~~d~~~~~~------~~~~D~i~~nppy~~~~~ 128 (212)
| . .....+.|+++... ....|+|+.|.||.....
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~ 183 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS 183 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc
Confidence 1 1 35678888887432 226899999999988843
No 205
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.47 E-value=8e-07 Score=73.44 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc-----------CCceEEEEcccccC------cC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRNL------EW 110 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------~~~v~~~~~d~~~~------~~ 110 (212)
++.+|||+|||-|.........+...++|+|++..+++.|+++.+.. .....++.+|.... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999999998888878889999999999999999988321 12567889987643 22
Q ss_pred C-CcccEEEEcCCCCCC--CCCchHHHHHHHHhhcC-ceEEEEecCchH
Q 028214 111 R-GHVDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSLHKTSTR 155 (212)
Q Consensus 111 ~-~~~D~i~~nppy~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 155 (212)
. .+||+|-+--.+|.. +......+++.+...++ ++.|+..-+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 2 289999998888877 33333457777777765 455555555443
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.2e-06 Score=71.63 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=68.5
Q ss_pred cCCCCCCEEEEEcCCcChHHHHHHHcC---CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC----ccc
Q 028214 44 FGDVSNKVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG----HVD 115 (212)
Q Consensus 44 ~~~~~~~~vlDlg~G~G~~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~----~~D 115 (212)
+...++.+|||++++.|+=+..++... ...|+++|.++.-++..++|++..|. ++.+.+.|....+... +||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 356788999999999999888888652 23579999999999999999999998 7788888876554322 599
Q ss_pred EEEEcCCCCCC
Q 028214 116 TVVMNPPFGTR 126 (212)
Q Consensus 116 ~i~~nppy~~~ 126 (212)
.|+.|+|+...
T Consensus 232 ~iLlDaPCSg~ 242 (355)
T COG0144 232 RILLDAPCSGT 242 (355)
T ss_pred EEEECCCCCCC
Confidence 99999999765
No 207
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.40 E-value=9.2e-07 Score=68.14 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCcChH-HHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc-CC--ceEEEEcccccCcCC------CcccEE
Q 028214 48 SNKVVADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRNLEWR------GHVDTV 117 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~-~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~v~~~~~d~~~~~~~------~~~D~i 117 (212)
++.++||+|.|.-.+ .+.-.+....+.+|.|+|+.+++.|+.++..| ++ .+++....-.+-.+. +.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 456899999997653 33333444558999999999999999999988 44 466544432222222 289999
Q ss_pred EEcCCCCCC
Q 028214 118 VMNPPFGTR 126 (212)
Q Consensus 118 ~~nppy~~~ 126 (212)
+||||||..
T Consensus 158 lCNPPFh~s 166 (292)
T COG3129 158 LCNPPFHDS 166 (292)
T ss_pred ecCCCcchh
Confidence 999999986
No 208
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.38 E-value=3.6e-06 Score=64.94 Aligned_cols=68 Identities=38% Similarity=0.422 Sum_probs=53.2
Q ss_pred EEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEE
Q 028214 52 VADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVM 119 (212)
Q Consensus 52 vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~ 119 (212)
|+|+||-.|.+++.+.+.+ +.+++++|+++..++.|++++...+. +++++.+|.++...+. ..|.|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence 6899999999999999886 45799999999999999999999886 7999999987755544 3787775
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.37 E-value=1.3e-05 Score=63.81 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=87.1
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhc-----CCceEEEEcccccCcCCC---cccEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRG---HVDTVV 118 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~---~~D~i~ 118 (212)
++++||-+|.|.|....++.++. ..+++.+|+|+..++.|++.+... ..+++++.+|...+.... +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 68899999999999999999875 579999999999999999877642 127999999998876542 799999
Q ss_pred EcCCCCCCC--CCchHHHHHHHHhhcC-ceEEEEec--CchHHHHHHHHHhhcCCcceeEEEEEeecCCc
Q 028214 119 MNPPFGTRK--KGVDMDFLSMALKVAS-QAVYSLHK--TSTREHVKKAALRDFNASSAEVLCELRYDVPQ 183 (212)
Q Consensus 119 ~nppy~~~~--~~~~~~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~ 183 (212)
.|.+-.... .-....+++.+.+.+. ++++.... +...........+.++ ..+..+......+|.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~-~~F~~v~~~~~~vP~ 224 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLR-SVFPQVKPYTAYVPS 224 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHH-TTSSEEEEEEEECTT
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHH-HhCCceEEEEEEcCe
Confidence 987642111 1123577777777665 45554432 2222333333334454 333344334444554
No 210
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.34 E-value=2.5e-06 Score=65.62 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC-cccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~D~i~~nppy~~ 125 (212)
...+.||.|||.|.++-.+...-..+|..+|.++.-++.|++.+..... ..++++..+.++.+.. +||+|++.-...+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 3568999999999999877654578999999999999999987765322 4678999999988765 9999999998888
Q ss_pred CCCCchHHHHHHHHhhcCceEEEEe
Q 028214 126 RKKGVDMDFLSMALKVASQAVYSLH 150 (212)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (212)
.++.....+++++...+....++++
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 8888888999999877654334333
No 211
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=4.4e-06 Score=68.69 Aligned_cols=91 Identities=25% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccCcCC--CcccEEEEcCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR--GHVDTVVMNPPF 123 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~~v~~~~~d~~~~~~~--~~~D~i~~nppy 123 (212)
...+++|..+|+|.-++-.+.. +..+|+..|+||++++.+++|++.| +.+...++.|+..+... ..||+|=.||-
T Consensus 52 ~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF- 130 (380)
T COG1867 52 LPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPF- 130 (380)
T ss_pred CCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCC-
Confidence 3789999999999999988865 3448999999999999999999999 44778888898877766 38999999974
Q ss_pred CCCCCCchHHHHHHHHhhcCc
Q 028214 124 GTRKKGVDMDFLSMALKVASQ 144 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~ 144 (212)
|...+|++.+++..+.
T Consensus 131 -----GSPaPFlDaA~~s~~~ 146 (380)
T COG1867 131 -----GSPAPFLDAALRSVRR 146 (380)
T ss_pred -----CCCchHHHHHHHHhhc
Confidence 7778999998887664
No 212
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=98.31 E-value=1.1e-06 Score=69.44 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=101.4
Q ss_pred HHHHhccCCCCCCccccccc-CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHH
Q 028214 6 LESVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDS 83 (212)
Q Consensus 6 l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~ 83 (212)
|+.+..=.+..+.+...+.| |.|+.....+....... +++.++.|+-+| -.-..+++++..+ +.+|..+|+|+..
T Consensus 111 l~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~R--GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERl 187 (354)
T COG1568 111 LEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSR--GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERL 187 (354)
T ss_pred HHHHHHHHhcCCCcchhcccccccccceeeeeeeeccc--cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHH
Confidence 34444334455556666666 77776665554322222 667899999999 6666777777654 6789999999999
Q ss_pred HHHHHHHHhhcCC-ceEEEEcccccCcCCC---cccEEEEcCCCCCCCCCchHHHHHHHHhhcC---c--eEEEEecCch
Q 028214 84 LELASENAADLEL-DIDFVQCDIRNLEWRG---HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS---Q--AVYSLHKTST 154 (212)
Q Consensus 84 ~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~---~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~---~--~~~~~~~~~~ 154 (212)
+.+..+-++..|. +++.+.-|+.+..+.+ +||+.+.|||+... ....|+.+-...++ + -.++....++
T Consensus 188 i~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~---alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 188 IKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIK---ALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred HHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchhhHH---HHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 9999999999998 5999999999887765 89999999996431 22345544443332 2 2334444555
Q ss_pred HHHHHHHH
Q 028214 155 REHVKKAA 162 (212)
Q Consensus 155 ~~~~~~~~ 162 (212)
.....+..
T Consensus 265 idkW~eiQ 272 (354)
T COG1568 265 IDKWREIQ 272 (354)
T ss_pred HHHHHHHH
Confidence 54444433
No 213
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=3.4e-06 Score=65.51 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=68.3
Q ss_pred EEEEEcCCcChHHHHHHHcCC---CeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC-----cCCCcccEEEEcCC
Q 028214 51 VVADFGCGCGTLGAAATLLGA---DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL-----EWRGHVDTVVMNPP 122 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D~i~~npp 122 (212)
+||++|||.|.....+.+... -+|+++|.++.+++..+++......++.....|+... +.+.++|+|++-=.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999999888887532 4899999999999999998876544444444444332 22238998776544
Q ss_pred CCCCCCCchHHHHHHHHhhcCceEEEEecC
Q 028214 123 FGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (212)
Q Consensus 123 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 152 (212)
+....++.....++.+.+..+.+..+++..
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 444445555566666666655444444443
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.30 E-value=1.2e-05 Score=64.87 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccCcCCC--cccEEEEc
Q 028214 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRG--HVDTVVMN 120 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~--~~D~i~~n 120 (212)
.++||-+|.|.|..++++.++. ..+++.+|+|+..++.+++.+.... .+++++.+|..++.... +||+|++|
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999985 5799999999999999999887654 27899999999887644 79999986
Q ss_pred CCCC--CCCCCchHHHHHHHHhhcC-ceEEEEe
Q 028214 121 PPFG--TRKKGVDMDFLSMALKVAS-QAVYSLH 150 (212)
Q Consensus 121 ppy~--~~~~~~~~~~l~~~~~~~~-~~~~~~~ 150 (212)
..=. ....=....+++.+.+.++ +++++..
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4311 1111124578888887765 4666555
No 215
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.29 E-value=3.9e-06 Score=68.25 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=67.6
Q ss_pred HhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC------Cc
Q 028214 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR------GH 113 (212)
Q Consensus 41 ~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~ 113 (212)
...+...++..++|..+|.|..+..++.. +..+|+|+|.|+.+++.+++++...+-++.++++++.++... .+
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCc
Confidence 33334457789999999999999999965 347999999999999999998876655799999999876421 26
Q ss_pred ccEEEEcCCCCC
Q 028214 114 VDTVVMNPPFGT 125 (212)
Q Consensus 114 ~D~i~~nppy~~ 125 (212)
+|.|++|.-...
T Consensus 93 vDgIl~DLGvSS 104 (305)
T TIGR00006 93 IDGILVDLGVSS 104 (305)
T ss_pred ccEEEEeccCCH
Confidence 999998876544
No 216
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=98.29 E-value=3e-06 Score=66.21 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=47.7
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHH---hhcC-C------ceEEEEcccccCcCC--CcccEE
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA---ADLE-L------DIDFVQCDIRNLEWR--GHVDTV 117 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~-~------~v~~~~~d~~~~~~~--~~~D~i 117 (212)
.+|||..+|-|..++.++..|+ +|+++|-||-+....+.-+ .... . +++++++|..++... .+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999998776 8999999987765554322 2111 1 799999999887652 399999
Q ss_pred EEcCCCCCCCCCc
Q 028214 118 VMNPPFGTRKKGV 130 (212)
Q Consensus 118 ~~nppy~~~~~~~ 130 (212)
++||+|.+..+++
T Consensus 156 Y~DPMFp~~~ksa 168 (234)
T PF04445_consen 156 YFDPMFPERKKSA 168 (234)
T ss_dssp EE--S-----TTT
T ss_pred EECCCCCCccccc
Confidence 9999998864443
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=98.27 E-value=6.7e-05 Score=59.97 Aligned_cols=95 Identities=9% Similarity=-0.050 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccCcCCCcccEEEEcC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~~~D~i~~np 121 (212)
..+++||=+|.|.|...+++.++.. +|+.+|+|+..++.+++-+.... .+++++.. +.+. ..++||+|+.|.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 3678999999999999999999864 99999999999999999554322 16776652 2211 123899999996
Q ss_pred CCCCCCCCchHHHHHHHHhhcC-ceEEEEec
Q 028214 122 PFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 151 (212)
Q Consensus 122 py~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 151 (212)
.|. ..+.+.+.+.+. +++++...
T Consensus 148 ~~~-------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 EPD-------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCC-------hHHHHHHHHhcCCCcEEEECC
Confidence 532 456666666654 45565543
No 218
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.27 E-value=1.1e-05 Score=58.54 Aligned_cols=74 Identities=27% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHH-----cCCCeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEcccccCcCCCcccE
Q 028214 46 DVSNKVVADFGCGCGTLGAAATL-----LGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRGHVDT 116 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~-----~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~v~~~~~d~~~~~~~~~~D~ 116 (212)
..+...|+|+|||.|.++..++. ....+|+++|.++..++.+..+.+..+. +.++..++..+.......++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 34678999999999999999998 5566999999999999999988887662 45666666655443335666
Q ss_pred EEE
Q 028214 117 VVM 119 (212)
Q Consensus 117 i~~ 119 (212)
++.
T Consensus 103 ~vg 105 (141)
T PF13679_consen 103 LVG 105 (141)
T ss_pred EEE
Confidence 664
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.27 E-value=1.2e-05 Score=65.16 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=68.5
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC---CCcccEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW---RGHVDTVV 118 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~---~~~~D~i~ 118 (212)
...++.+|||+++|.|.-+..++.. + ...+++.|+++..+...+.|++..|. ++.+...|...... ...||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 4568899999999999988888854 3 56999999999999999999999998 78888888887632 22699999
Q ss_pred EcCCCCCC
Q 028214 119 MNPPFGTR 126 (212)
Q Consensus 119 ~nppy~~~ 126 (212)
.|+|....
T Consensus 162 vDaPCSg~ 169 (283)
T PF01189_consen 162 VDAPCSGL 169 (283)
T ss_dssp EECSCCCG
T ss_pred cCCCccch
Confidence 99999765
No 220
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.26 E-value=2e-05 Score=62.39 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCC
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy 123 (212)
...+..+|+|+|+|+|.++..+++. +..+++..|+ |..++.+++ ..+++++.+|+.+. .+. +|++++.-.+
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~-~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDP-LPV-ADVYLLRHVL 168 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTC-CSS-ESEEEEESSG
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHhh-hcc-ccceeeehhh
Confidence 3345679999999999999999965 5679999999 889988888 22799999999843 343 9999998888
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
|.-.+......++++.+..+
T Consensus 169 h~~~d~~~~~iL~~~~~al~ 188 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALK 188 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSE
T ss_pred hhcchHHHHHHHHHHHHHhC
Confidence 77666666667776665543
No 221
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.23 E-value=5e-06 Score=60.25 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=50.3
Q ss_pred EEEEEcCCcChHHHHHHHcCC-CeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCc
Q 028214 51 VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (212)
+++|+|||.|..+..+++.+. .+++++|.++.+++.+++|++.++. ++++++..+.+-.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 489999999999999987754 4899999999999999999998876 6888887776543
No 222
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.23 E-value=9.7e-06 Score=68.18 Aligned_cols=93 Identities=26% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCc--CCCcccEEEEcC
Q 028214 49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE--WRGHVDTVVMNP 121 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~--~~~~~D~i~~np 121 (212)
+-++||.-+|||.-++-.+.. +..+|++.|+|+++++.+++|++.|++ .+++.+.|+..+. ....||+|=.||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 458999999999998888865 457999999999999999999999987 3789999998876 455999999997
Q ss_pred CCCCCCCCchHHHHHHHHhhcCceEE
Q 028214 122 PFGTRKKGVDMDFLSMALKVASQAVY 147 (212)
Q Consensus 122 py~~~~~~~~~~~l~~~~~~~~~~~~ 147 (212)
- |...+|++.+++..+.+.+
T Consensus 130 f------GSp~pfldsA~~~v~~gGl 149 (377)
T PF02005_consen 130 F------GSPAPFLDSALQAVKDGGL 149 (377)
T ss_dssp S------S--HHHHHHHHHHEEEEEE
T ss_pred C------CCccHhHHHHHHHhhcCCE
Confidence 4 7888999999988764333
No 223
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.21 E-value=2.5e-05 Score=61.62 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMN 120 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~n 120 (212)
...++||+|+|.|.++..++.. ..+|+++|.|+.|....+++ | .+++ |..++...+ +||+|.|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~vl--~~~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FTVL--DIDDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--CeEE--ehhhhhccCCceEEEeeh
Confidence 5678999999999999999986 56899999999886555443 3 3333 222233333 89999983
No 224
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.19 E-value=4.8e-06 Score=67.32 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=59.3
Q ss_pred EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC---CcccEEEEcCCCCCC
Q 028214 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---GHVDTVVMNPPFGTR 126 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~nppy~~~ 126 (212)
+++|++||.|.++..+...|...++++|+++.+++..+.|.... ++++|+.++... ..+|+++.+||+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-----LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 68999999999999888888878999999999999999997532 566777776543 279999999999755
No 225
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.6e-05 Score=60.56 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-CC--CeEEEEeCChHHHHHHHHHHhhcC-----C------ceEEEEcccccCcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-GA--DQVIAIDIDSDSLELASENAADLE-----L------DIDFVQCDIRNLEWRG 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~~--~~v~~~D~~~~~~~~a~~~~~~~~-----~------~v~~~~~d~~~~~~~~ 112 (212)
.++.++||+|+|||.++..++++ +. ..++|+|.-++.++.+++|+...- . +..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 48999999999999998888855 32 244999999999999999997643 1 6788999998876665
Q ss_pred -cccEEEEc
Q 028214 113 -HVDTVVMN 120 (212)
Q Consensus 113 -~~D~i~~n 120 (212)
+||.|.+.
T Consensus 161 a~YDaIhvG 169 (237)
T KOG1661|consen 161 APYDAIHVG 169 (237)
T ss_pred CCcceEEEc
Confidence 99999985
No 226
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.17 E-value=4.9e-05 Score=61.43 Aligned_cols=146 Identities=17% Similarity=0.088 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccc
Q 028214 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (212)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (212)
-......+.++....+...+.+|||+|||.|.....+... ...+++++|.|+.+++.++..++.... .......+..
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh
Confidence 3455566667766666778899999999999876655543 356899999999999999887765432 1111111111
Q ss_pred -cCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHH--HHHHHHhhcCCcceeEEEE
Q 028214 107 -NLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREH--VKKAALRDFNASSAEVLCE 176 (212)
Q Consensus 107 -~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~~~~~~~~~~ 176 (212)
+...-...|+|++.-.+...........++........ ..+++.+++..- ....+...|.+.++.++.-
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 11111145999987777666554445566666555443 556667665332 2233324444345555544
No 227
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.17 E-value=2.4e-05 Score=64.29 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCCChHHHHHHHHHHHhhcC--------CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCc
Q 028214 26 YPTGPHIASRMLYTAENSFG--------DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD 97 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~--------~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~ 97 (212)
...+++-....|..+...+. ..++++++|+||++|..+-.+.++|. +|+++|..+- ...+...+ +
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~-~ 253 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTG-Q 253 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCC-C
Confidence 33444555556666655443 24788999999999999999999877 9999996541 12222222 7
Q ss_pred eEEEEcccccCcC-CCcccEEEEcCC
Q 028214 98 IDFVQCDIRNLEW-RGHVDTVVMNPP 122 (212)
Q Consensus 98 v~~~~~d~~~~~~-~~~~D~i~~npp 122 (212)
|+.+.+|...+.+ ...+|++++|..
T Consensus 254 V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 254 VEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred EEEEeccCcccCCCCCCCCEEEEecc
Confidence 8899999887765 448999999876
No 228
>PHA01634 hypothetical protein
Probab=98.10 E-value=2.2e-05 Score=55.08 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCCcccEEEEcC
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNP 121 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~np 121 (212)
..++++|+|+|++.|..++.++..|++.|+++|.++...+..++|++.+.+ .--+...++.. .-..||+.++|.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~--~Y~~~Di~~iDC 100 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG--EYEDVDIFVMDC 100 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc--cCCCcceEEEEc
Confidence 358999999999999999999999999999999999999999999987754 11122233222 112799888874
No 229
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.10 E-value=3.2e-05 Score=59.26 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcCh----HHHHHHHc-----C-CCeEEEEeCChHHHHHHHHHH--------------h-----hcC---
Q 028214 48 SNKVVADFGCGCGT----LGAAATLL-----G-ADQVIAIDIDSDSLELASENA--------------A-----DLE--- 95 (212)
Q Consensus 48 ~~~~vlDlg~G~G~----~~~~~~~~-----~-~~~v~~~D~~~~~~~~a~~~~--------------~-----~~~--- 95 (212)
+.-+|+..||++|- +++.+... + .-+++|+|+|+.+++.|++-. + ..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999995 33333341 1 238999999999999987632 0 001
Q ss_pred -C------ceEEEEccccc-CcCCCcccEEEEcCCCCCCCCCchHHHHHHHH
Q 028214 96 -L------DIDFVQCDIRN-LEWRGHVDTVVMNPPFGTRKKGVDMDFLSMAL 139 (212)
Q Consensus 96 -~------~v~~~~~d~~~-~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~ 139 (212)
+ .|+|.+.|+.+ .+....||+|+|--.+...+.......++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLH 162 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHG
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHH
Confidence 1 68999999999 33334999999965544443333333344333
No 230
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.09 E-value=8.4e-05 Score=65.12 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCc---CCCcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE---WRGHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~---~~~~~D~i~~npp 122 (212)
....+||+|||.|.+.+.+|.. +...++|+|+....+..+...+...+. |+.++.+|+..+. ...++|.|+.|=|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4568999999999999999965 556899999999998888888777776 8888888875332 3348998888777
Q ss_pred CCCC------CCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHH
Q 028214 123 FGTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 162 (212)
Q Consensus 123 y~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
=-|. +.-....+++...+..+.+..+.+.+....+.....
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~ 472 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI 472 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 5554 233455777777777664445555666555554433
No 231
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.09 E-value=2.9e-06 Score=65.43 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---CCcccEEEEcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RGHVDTVVMNPP 122 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~npp 122 (212)
+-++++|+|||||..+..+..+ ..+.+|+|+|++|++.|.+.--. -.+.++|+..+.. ..+||+|++--.
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y----D~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY----DTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch----HHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 3579999999999999999877 56899999999999999876322 1344555544432 238999997543
No 232
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.08 E-value=3e-05 Score=63.80 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=63.1
Q ss_pred CCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHh--hcC---C---ceEEEEcccccCcCCC--cccEE
Q 028214 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA--DLE---L---DIDFVQCDIRNLEWRG--HVDTV 117 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~--~~~---~---~v~~~~~d~~~~~~~~--~~D~i 117 (212)
-.++|-+|.|.|.-.+++.+.+ ..+++-+|+||.+++.++++.- ..+ . +++++..|+.++.... .||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999999986 7899999999999999995542 211 1 7899999999998665 89999
Q ss_pred EEcCC
Q 028214 118 VMNPP 122 (212)
Q Consensus 118 ~~npp 122 (212)
+.|.|
T Consensus 370 IVDl~ 374 (508)
T COG4262 370 IVDLP 374 (508)
T ss_pred EEeCC
Confidence 99887
No 233
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=8.1e-05 Score=57.59 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC-------Cccc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-------GHVD 115 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-------~~~D 115 (212)
..++++||+|.=||..++..|.. ...+|+++|+|++..+.+.+..+..|+ +++++++++.+...+ ..||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 36789999999999988877755 245899999999999999999998887 899999998764321 2899
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEE
Q 028214 116 TVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS 148 (212)
Q Consensus 116 ~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~ 148 (212)
+++.|- .+.....+..++++..+ +++.+
T Consensus 152 faFvDa-----dK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 152 FAFVDA-----DKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred EEEEcc-----chHHHHHHHHHHHhhcccccEEE
Confidence 999974 23444466777777765 34443
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.91 E-value=0.00071 Score=54.28 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCcCh----HHHHHHHcC------CCeEEEEeCChHHHHHHHHHHhh---------------------cC-
Q 028214 48 SNKVVADFGCGCGT----LGAAATLLG------ADQVIAIDIDSDSLELASENAAD---------------------LE- 95 (212)
Q Consensus 48 ~~~~vlDlg~G~G~----~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~~~---------------------~~- 95 (212)
..-+|+..||+||- +++.+.+.. .-+|+|+|+|..+++.|+.-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46699999999994 344444432 24899999999999988752200 01
Q ss_pred C--------ceEEEEcccccCc-CCCcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHHHhhc
Q 028214 96 L--------DIDFVQCDIRNLE-WRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDF 166 (212)
Q Consensus 96 ~--------~v~~~~~d~~~~~-~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 166 (212)
. .|.|.+.|+.+.. ....||+|+|= .+.+.+...++..+.......|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR------------------------NVLIYFd~~~q~~il~~f~~~L 231 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR------------------------NVLIYFDEETQERILRRFADSL 231 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEc------------------------ceEEeeCHHHHHHHHHHHHHHh
Confidence 0 5788999988877 45589999993 4555667777888888887888
Q ss_pred CCcceeEEEEEeecCCc
Q 028214 167 NASSAEVLCELRYDVPQ 183 (212)
Q Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (212)
+ ++|.++.-+.-.++.
T Consensus 232 ~-~gG~LflG~sE~~~~ 247 (268)
T COG1352 232 K-PGGLLFLGHSETIPG 247 (268)
T ss_pred C-CCCEEEEccCcccCC
Confidence 7 788877766655543
No 235
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.88 E-value=0.00029 Score=59.07 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC---cccEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG---HVDTVV 118 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~---~~D~i~ 118 (212)
...++.+|||++|..|.=+..+|.. +...|+|.|.+...++..+.|+...|+ +..+++.|...++... +||-|+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceee
Confidence 4568899999999999876666643 456899999999999999999999998 7888999998775332 799999
Q ss_pred EcCCCCC
Q 028214 119 MNPPFGT 125 (212)
Q Consensus 119 ~nppy~~ 125 (212)
.|.|..-
T Consensus 318 LDAPCSG 324 (460)
T KOG1122|consen 318 LDAPCSG 324 (460)
T ss_pred ecCCCCC
Confidence 9999876
No 236
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.87 E-value=7.6e-05 Score=60.49 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCEEEEEcCCcCh--HHHH--HHHc-C----CCeEEEEeCChHHHHHHHHHHh------------------h-----cC-
Q 028214 49 NKVVADFGCGCGT--LGAA--ATLL-G----ADQVIAIDIDSDSLELASENAA------------------D-----LE- 95 (212)
Q Consensus 49 ~~~vlDlg~G~G~--~~~~--~~~~-~----~~~v~~~D~~~~~~~~a~~~~~------------------~-----~~- 95 (212)
.-+|+..||+||- .+++ +... + ..+|+|+|+|+.+++.|++-.- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 3433 3332 1 2479999999999999987520 0 01
Q ss_pred ------C--ceEEEEcccccCcC--CCcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHHHHHhh
Q 028214 96 ------L--DIDFVQCDIRNLEW--RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRD 165 (212)
Q Consensus 96 ------~--~v~~~~~d~~~~~~--~~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (212)
+ .|+|.+.|+.+.+. ...||+|+|--.+.+. .+..+..+.....+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF------------------------~~~~~~~vl~~l~~~ 251 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF------------------------DKTTQERILRRFVPL 251 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC------------------------CHHHHHHHHHHHHHH
Confidence 1 57899999988543 2489999995443333 334444555555566
Q ss_pred cCCcceeEEEEEe
Q 028214 166 FNASSAEVLCELR 178 (212)
Q Consensus 166 l~~~~~~~~~~~~ 178 (212)
|+ ++|.++.-+.
T Consensus 252 L~-pgG~L~lG~s 263 (287)
T PRK10611 252 LK-PDGLLFAGHS 263 (287)
T ss_pred hC-CCcEEEEeCc
Confidence 66 6666655444
No 237
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.84 E-value=0.0002 Score=54.81 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ce-EEEEcccccCcCC---------Cccc
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNLEWR---------GHVD 115 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v-~~~~~d~~~~~~~---------~~~D 115 (212)
.+.+|||+|||||-....++.. +...-.-.|.++......+..+...+. |+ ..+..|+.....+ ..||
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 3336999999999999999965 445667889999888777777776655 33 3456666554221 2799
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEecC
Q 028214 116 TVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT 152 (212)
Q Consensus 116 ~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 152 (212)
.|++--..|..........+..+.+.++ ++.++++.|
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 9999878777766666677776666654 455555554
No 238
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.83 E-value=3.7e-05 Score=63.27 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=57.0
Q ss_pred EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC---cccEEEEcCCCCCC
Q 028214 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG---HVDTVVMNPPFGTR 126 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~~D~i~~nppy~~~ 126 (212)
+++|++||.|.++.-+...|...+.++|+++.+++.-+.|.. ....+|+.++.... .+|+++..||+...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccCCceE
Confidence 689999999999999999887789999999999999999985 78889998876443 49999999999775
No 239
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.83 E-value=8.5e-05 Score=55.14 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=50.1
Q ss_pred EEEeCChHHHHHHHHHHhhcC----CceEEEEcccccCcCCC-cccEEEEcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 75 IAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 75 ~~~D~~~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
+|+|+|+.|++.|+++.+..+ .+++++++|+.+++..+ +||+|++.-.+++.. .....++++.+.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcC
Confidence 489999999999987765322 16899999999998766 899999976655432 33456677776665
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.78 E-value=0.00058 Score=52.64 Aligned_cols=107 Identities=16% Similarity=0.067 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEEcCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~nppy 123 (212)
.+.++.|+||-.|.+.+.+.+.+ +..+++.|+++..++.|.+++..++. .+++..+|.+.....+ .+|+|+.-..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 45569999999999999999764 67899999999999999999999887 7999999987766555 8998776322
Q ss_pred CCCCCCchHHHHHHHHhhcCceEEEEecCchHHHH
Q 028214 124 GTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHV 158 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (212)
.-.....++++.....++.-.+++-|....+-
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~ 126 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQPNIHTYE 126 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEECCCCCHHH
Confidence 11122234444444344333455555544433
No 241
>PRK11524 putative methyltransferase; Provisional
Probab=97.77 E-value=0.00011 Score=59.76 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh
Q 028214 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (212)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 93 (212)
.+++..++.. -..+++.|||++||||..++++.+.+. +.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~-~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILA-SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3444444443 224889999999999999999999865 899999999999999999863
No 242
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.77 E-value=9.6e-05 Score=57.47 Aligned_cols=55 Identities=29% Similarity=0.404 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 028214 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~ 89 (212)
+..+...++...- .+++.|||++||+|..+.++.+.+. +.+|+|+++..++.|++
T Consensus 177 P~~l~~~lI~~~t-----~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAST-----NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhh-----ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 3445555553332 2789999999999999999999865 89999999999999874
No 243
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.75 E-value=0.00092 Score=53.73 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc-C--CCeEEEEeCChHHHHHHHHHHhhcCC-c-eEEEEcccccCcCCC----cccEE
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNLEWRG----HVDTV 117 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~-~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~-v~~~~~d~~~~~~~~----~~D~i 117 (212)
-.+-+|+|+.||.|...+.+... + ...|.-.|.++..++..++.++..|. + ++|.++|+.+...-. +++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999987777643 3 36899999999999999999999998 4 499999998853221 78999
Q ss_pred EEcCCCCCCCCCc-hHHHHHHHHhhcC
Q 028214 118 VMNPPFGTRKKGV-DMDFLSMALKVAS 143 (212)
Q Consensus 118 ~~nppy~~~~~~~-~~~~l~~~~~~~~ 143 (212)
+...-|....+.. ....+.-......
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~ 240 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALE 240 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhC
Confidence 9988887765533 3334554444433
No 244
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.73 E-value=0.00018 Score=54.33 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC---------cCC--Ccc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL---------EWR--GHV 114 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~---------~~~--~~~ 114 (212)
.+.+++|+||++|.++-.+..++ ..+|+|+|+.+. ... ..+..+++|+.+. ... ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~----~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPL----QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccc----cceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999886 579999999875 000 1345555554432 211 379
Q ss_pred cEEEEcCCCC
Q 028214 115 DTVVMNPPFG 124 (212)
Q Consensus 115 D~i~~nppy~ 124 (212)
|+|++|....
T Consensus 93 dlv~~D~~~~ 102 (181)
T PF01728_consen 93 DLVLSDMAPN 102 (181)
T ss_dssp SEEEE-----
T ss_pred ceeccccccC
Confidence 9999998443
No 245
>PRK13699 putative methylase; Provisional
Probab=97.68 E-value=0.00023 Score=55.93 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (212)
+++.|||++||+|..++++.+.+. +.+|+|+++..++.+.++++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 788999999999999999998865 8999999999999999988754
No 246
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.63 E-value=0.00011 Score=59.98 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=60.7
Q ss_pred HHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC-------C
Q 028214 40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-------R 111 (212)
Q Consensus 40 ~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-------~ 111 (212)
....+...++...+|..-|.|+.+..+.+. +..+++|+|.|+.+++.|++++.....++.++++++.++.. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCC
Confidence 333334457889999999999999999965 45799999999999999999988665589999999987642 1
Q ss_pred CcccEEEEcCCCCC
Q 028214 112 GHVDTVVMNPPFGT 125 (212)
Q Consensus 112 ~~~D~i~~nppy~~ 125 (212)
.++|.|++|.-...
T Consensus 92 ~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 92 NKVDGILFDLGVSS 105 (310)
T ss_dssp S-EEEEEEE-S--H
T ss_pred CccCEEEEccccCH
Confidence 27999998875543
No 247
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.63 E-value=0.00044 Score=59.81 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=58.8
Q ss_pred CCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------------
Q 028214 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------------- 111 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------------- 111 (212)
.-+++|++||.|.++.-+...|...|.++|+++.+.+.-+.|....+ ....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhhhhhhcc
Confidence 34899999999999999888787788999999999998888863211 234455666655421
Q ss_pred -CcccEEEEcCCCCCC
Q 028214 112 -GHVDTVVMNPPFGTR 126 (212)
Q Consensus 112 -~~~D~i~~nppy~~~ 126 (212)
..+|+++..||+...
T Consensus 167 ~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 167 IPDHDVLLAGFPCQPF 182 (467)
T ss_pred CCCCCEEEEcCCCCcc
Confidence 168999999999765
No 248
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.62 E-value=0.002 Score=49.88 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC
Q 028214 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (212)
.+++.++ .-.......++.+||-+|+++|.....++.. + ...|+++|.++...+-.-.-++... |+-.+..|+...
T Consensus 57 KLaAai~-~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr~P 134 (229)
T PF01269_consen 57 KLAAAIL-KGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDARHP 134 (229)
T ss_dssp HHHHHHH-TT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TTSG
T ss_pred HHHHHHH-cCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCCCh
Confidence 3444443 3344345568899999999999998888865 4 5689999999977655554444333 899999999875
Q ss_pred cCCC----cccEEEEcCC
Q 028214 109 EWRG----HVDTVVMNPP 122 (212)
Q Consensus 109 ~~~~----~~D~i~~npp 122 (212)
.... .+|+|++|-.
T Consensus 135 ~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp GGGTTTS--EEEEEEE-S
T ss_pred HHhhcccccccEEEecCC
Confidence 5432 8999999865
No 249
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=0.00011 Score=60.58 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=57.7
Q ss_pred EEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC--cccEEEEcCCCCCC
Q 028214 52 VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVMNPPFGTR 126 (212)
Q Consensus 52 vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~D~i~~nppy~~~ 126 (212)
++|++||.|.++.-+...|...+.++|+++.+++..+.|... .++++|+.++.... .+|+++..||+...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 589999999999999888877788999999999999998753 34567877765433 68999999998665
No 250
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.00043 Score=55.82 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC--
Q 028214 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-- 111 (212)
Q Consensus 36 ~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-- 111 (212)
++......+...++...+|..-|.|..+..+.... ..+++|+|.|+.+++.|++.....+-++.++++++.++...
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHH
Confidence 44555555566688999999999999999999763 35799999999999999999988777899999998776432
Q ss_pred ----CcccEEEEcCC
Q 028214 112 ----GHVDTVVMNPP 122 (212)
Q Consensus 112 ----~~~D~i~~npp 122 (212)
.++|-|++|.-
T Consensus 91 ~~~i~~vDGiL~DLG 105 (314)
T COG0275 91 ELGIGKVDGILLDLG 105 (314)
T ss_pred hcCCCceeEEEEecc
Confidence 16777776643
No 251
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.59 E-value=0.003 Score=49.99 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-------ceEEEEcccccCcCCC----c-cc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRG----H-VD 115 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~~~~----~-~D 115 (212)
+...+|++|+|+|..++.++.....+|.-.|. +..++..+.|...++. ++.+...++....... . +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35679999999999999999866668888887 4566665555443322 3444444444433221 4 89
Q ss_pred EEEE-cCCCCCCCCCchHHHHHHHHh
Q 028214 116 TVVM-NPPFGTRKKGVDMDFLSMALK 140 (212)
Q Consensus 116 ~i~~-nppy~~~~~~~~~~~l~~~~~ 140 (212)
+|++ |+.|...........+...+.
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~ 190 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLA 190 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHh
Confidence 8885 555554444444445554443
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.59 E-value=0.00041 Score=54.64 Aligned_cols=72 Identities=25% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 119 (212)
...+|+|+|||.--+++...... ...++|+|+|..++++...-+...+...++...|+..-+.+...|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 37899999999999988877553 4589999999999999999998888888888899998877778998886
No 253
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00022 Score=59.18 Aligned_cols=74 Identities=26% Similarity=0.315 Sum_probs=62.1
Q ss_pred CCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC----cccEEEEcCCCC
Q 028214 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG----HVDTVVMNPPFG 124 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~----~~D~i~~nppy~ 124 (212)
..+++|++||.|.+..-+...|..-+.++|+++.+++.-+.|... ..++..|+....... .+|+++..||+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 358999999999999888888887899999999999999999863 456777777665443 789999999997
Q ss_pred CC
Q 028214 125 TR 126 (212)
Q Consensus 125 ~~ 126 (212)
..
T Consensus 79 ~F 80 (328)
T COG0270 79 DF 80 (328)
T ss_pred ch
Confidence 76
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00016 Score=56.25 Aligned_cols=86 Identities=28% Similarity=0.356 Sum_probs=59.5
Q ss_pred HHHHHhhcC-CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC---
Q 028214 37 LYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--- 112 (212)
Q Consensus 37 l~~~~~~~~-~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--- 112 (212)
|..+...+. ..+++.+||+|+-||.|+-.+.++|+.+|+|+|.....+..--++-.. .+..-..|+..+.+..
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~r---V~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPR---VIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCc---EEEEecCChhhCCHHHccc
Confidence 334444433 358899999999999999999999999999999876555433222111 2334455566555443
Q ss_pred cccEEEEcCCCCC
Q 028214 113 HVDTVVMNPPFGT 125 (212)
Q Consensus 113 ~~D~i~~nppy~~ 125 (212)
..|++++|-.|..
T Consensus 144 ~~d~~v~DvSFIS 156 (245)
T COG1189 144 KPDLIVIDVSFIS 156 (245)
T ss_pred CCCeEEEEeehhh
Confidence 6899999988764
No 255
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00028 Score=50.92 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=58.2
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVV 118 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~ 118 (212)
...+..+.+|+|+|.|.+-+.+++++..+.+|+|+|+-.+..++-..-..+. ...|..-|+-+....+ ++-+|+
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviF 145 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIF 145 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEe
Confidence 3335568999999999999999999867899999999999888877665555 6778888888777665 343444
No 256
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.53 E-value=4.5e-05 Score=61.08 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCcChHHH-HHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCCcccEEEEc
Q 028214 48 SNKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMN 120 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~-~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~n 120 (212)
.+..|.|+.+|.|.++. ++...|++.|+++|.||.+++..+.+++.|++ +..++.+|.....+....|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec
Confidence 45789999999999999 77788999999999999999999999999976 566788888777666678877653
No 257
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.51 E-value=0.00059 Score=59.84 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=67.1
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc---C--CCeEEEEeCChHHHHHHHHHHhhcCC-
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---G--ADQVIAIDIDSDSLELASENAADLEL- 96 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~---~--~~~v~~~D~~~~~~~~a~~~~~~~~~- 96 (212)
..++.|+..+..-+.. .... ...++..+.|+.||+|.+.+..... + ...++|-+.+..++..++.|+...+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~-~~~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~ 271 (501)
T TIGR00497 194 GGEFFTPQDISELLAR-IAIG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID 271 (501)
T ss_pred CceeeCcHHHHHHHHH-Hhcc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence 4557777766655433 2221 1124578999999999988765532 1 24689999999999999999765543
Q ss_pred --ceEEEEcccccCc-C--CCcccEEEEcCCCCC
Q 028214 97 --DIDFVQCDIRNLE-W--RGHVDTVVMNPPFGT 125 (212)
Q Consensus 97 --~v~~~~~d~~~~~-~--~~~~D~i~~nppy~~ 125 (212)
......+|....+ . ...||.|++||||..
T Consensus 272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 272 YANFNIINADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred ccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence 2233445543321 1 227999999999965
No 258
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00011 Score=56.81 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=64.5
Q ss_pred CCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCC
Q 028214 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~ 126 (212)
...++|+|||-|.+...+...+..+++-+|.+-.|++.++.. +..++.+.-..+|=+.++..+ ++|+|++....||.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 457999999999999999988888999999999999988654 334445667888877777665 99999999988886
No 259
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0033 Score=47.96 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=70.6
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFV 101 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~ 101 (212)
++.|-...+-.++.+..-+..++..++.+||=+|+.+|.....++.. +...++++|.++....-.-.-++... |+-++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PI 129 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPI 129 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-Cceee
Confidence 33343334444445555555557778999999999999998888865 55689999999887765555544433 78899
Q ss_pred EcccccCcCCC----cccEEEEcCC
Q 028214 102 QCDIRNLEWRG----HVDTVVMNPP 122 (212)
Q Consensus 102 ~~d~~~~~~~~----~~D~i~~npp 122 (212)
.+|+....... ..|+|+.|-.
T Consensus 130 L~DA~~P~~Y~~~Ve~VDviy~DVA 154 (231)
T COG1889 130 LEDARKPEKYRHLVEKVDVIYQDVA 154 (231)
T ss_pred ecccCCcHHhhhhcccccEEEEecC
Confidence 99997754432 7999998754
No 260
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00015 Score=53.08 Aligned_cols=133 Identities=12% Similarity=0.137 Sum_probs=77.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCc-ChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC----ceE
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DID 99 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~-G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~----~v~ 99 (212)
||..+.++..++..-.. ..+.+||++|.|- |..++.+|.. ....|...|-|+.+++..++....+-. ++.
T Consensus 11 wpseeala~~~l~~~n~----~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~ 86 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNK----IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC 86 (201)
T ss_pred cccHHHHHHHHHhchhH----HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence 56555555555544333 3789999999994 4456666633 456899999999999999887766522 222
Q ss_pred EEEcccccCcC---CCcccEEEE-cCCCCCCCCCchHHHHHHHHhhcCceEEEEecCc-hHHHHHHHH
Q 028214 100 FVQCDIRNLEW---RGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTS-TREHVKKAA 162 (212)
Q Consensus 100 ~~~~d~~~~~~---~~~~D~i~~-nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 162 (212)
+...+...... ...||+|++ |.-|...-.......+...+++.+..++++-..+ +...+.+.+
T Consensus 87 vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~ 154 (201)
T KOG3201|consen 87 VLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEV 154 (201)
T ss_pred hhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHH
Confidence 22222222111 127999986 5555433333445566666776665555443322 344444443
No 261
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.31 E-value=0.00042 Score=58.48 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=55.7
Q ss_pred EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC--cccEEE
Q 028214 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG--HVDTVV 118 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~--~~D~i~ 118 (212)
-+||+|+|||.++..+++.|+..|+++|.-..|.+.|++....+|. +|+++.--..+..... +.|+++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v 140 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAV 140 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhh
Confidence 5899999999999999999988999999999999999999999998 7777766555543321 455554
No 262
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0042 Score=47.70 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhcCCC-CCCEEEEEcCCcChHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc
Q 028214 31 HIASRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (212)
Q Consensus 31 ~~~~~~l~~~~~~~~~~-~~~~vlDlg~G~G~~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (212)
+-+..-+..+...+... ++.+|+|+||..|+-+-.+++.. ...|+|+|++|- .... ++.++++|+.+
T Consensus 27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----~~~~-----~V~~iq~d~~~ 96 (205)
T COG0293 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----KPIP-----GVIFLQGDITD 96 (205)
T ss_pred chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----ccCC-----CceEEeeeccC
Confidence 34444455555554333 56899999999999999999763 235999999872 1111 58899999987
Q ss_pred CcCCC---------cccEEEEcCC
Q 028214 108 LEWRG---------HVDTVVMNPP 122 (212)
Q Consensus 108 ~~~~~---------~~D~i~~npp 122 (212)
..... .+|+|++|+.
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCC
Confidence 54321 4699998765
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.23 E-value=0.0018 Score=46.71 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=52.4
Q ss_pred eEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC--C-cccEEEEcCCCCCCCC-------CchHHHHHHHHh
Q 028214 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR--G-HVDTVVMNPPFGTRKK-------GVDMDFLSMALK 140 (212)
Q Consensus 73 ~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~--~-~~D~i~~nppy~~~~~-------~~~~~~l~~~~~ 140 (212)
+|+|+|+++.+++.++++++..+. ++++++.+-..+... . .+|++++|.-|-+..+ ......++.++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999999999999999999877 699999887776542 2 7999999999977622 344567777777
Q ss_pred hcC
Q 028214 141 VAS 143 (212)
Q Consensus 141 ~~~ 143 (212)
.+.
T Consensus 81 lL~ 83 (140)
T PF06962_consen 81 LLK 83 (140)
T ss_dssp HEE
T ss_pred hhc
Confidence 654
No 264
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=97.18 E-value=0.00044 Score=56.00 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=52.3
Q ss_pred EEEEcCCcChH-HHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcc--------cccCcCCCcccEEEEc
Q 028214 52 VADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD--------IRNLEWRGHVDTVVMN 120 (212)
Q Consensus 52 vlDlg~G~G~~-~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d--------~~~~~~~~~~D~i~~n 120 (212)
=+|+|.|+-.+ .+.-++......+++|++...+..|..|+..++. .+.+++.+ .........||+++||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 37888776654 3333344456899999999999999999999887 44444442 2222222269999999
Q ss_pred CCCCCC
Q 028214 121 PPFGTR 126 (212)
Q Consensus 121 ppy~~~ 126 (212)
|||...
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 999765
No 265
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.04 E-value=0.017 Score=41.04 Aligned_cols=87 Identities=30% Similarity=0.438 Sum_probs=56.2
Q ss_pred EEEEcCCcChHHHHHHHcCC--CeEEEEeCChHHHHHHHHHHhhcCCc-eEEEEccccc--CcCCC--cccEEEEcCCCC
Q 028214 52 VADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN--LEWRG--HVDTVVMNPPFG 124 (212)
Q Consensus 52 vlDlg~G~G~~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~-v~~~~~d~~~--~~~~~--~~D~i~~nppy~ 124 (212)
++|+|||+|... .+..... ..++++|+++.++..++......... +.+..+|... .+... .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 3333322 37899999999998865554332112 6788888776 45544 799996555544
Q ss_pred CCCCCchHHHHHHHHhhc
Q 028214 125 TRKKGVDMDFLSMALKVA 142 (212)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~ 142 (212)
+.. ....+....+..
T Consensus 131 ~~~---~~~~~~~~~~~l 145 (257)
T COG0500 131 LLP---PAKALRELLRVL 145 (257)
T ss_pred cCC---HHHHHHHHHHhc
Confidence 333 344555555444
No 266
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.02 E-value=0.0004 Score=58.31 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE 109 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~ 109 (212)
.++..|.|++||.|-+++.++..+ +.|++.|+++++++..+.|+..+.+ +++....|+.++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 378899999999999999999886 5999999999999999999998876 4888888877665
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.016 Score=48.13 Aligned_cols=139 Identities=23% Similarity=0.270 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc---CC--CeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC-------
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL---GA--DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR------- 111 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~---~~--~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~------- 111 (212)
+..++++|||+++..|.=++.+... .. ..|++-|.++..+......++.... +..+...|+..++..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 4468999999999999977666654 22 2799999999988888777654432 344444444333221
Q ss_pred -C--cccEEEEcCCCCCC---CC------------------CchHHHHHHHH---hhcCceEEEEec--CchHHHHHHHH
Q 028214 112 -G--HVDTVVMNPPFGTR---KK------------------GVDMDFLSMAL---KVASQAVYSLHK--TSTREHVKKAA 162 (212)
Q Consensus 112 -~--~~D~i~~nppy~~~---~~------------------~~~~~~l~~~~---~~~~~~~~~~~~--~~~~~~~~~~~ 162 (212)
. .||-|++|-|...- ++ ......+.+.+ +.++..+|..|+ |.--+.+.+.+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~ 311 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEA 311 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHH
Confidence 1 89999999998653 10 12234444444 344568888875 44455666666
Q ss_pred HhhcCCcceeEEEEEeecCCccc
Q 028214 163 LRDFNASSAEVLCELRYDVPQLY 185 (212)
Q Consensus 163 ~r~l~~~~~~~~~~~~~~~~~~~ 185 (212)
.+.+. +..-+...+-.+|...
T Consensus 312 L~~~~--~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198|consen 312 LQKVG--GAVELVDVSGDLPGLK 332 (375)
T ss_pred HHHhc--Ccccceeeccccccce
Confidence 56554 2323333444555544
No 268
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.92 E-value=0.05 Score=44.94 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHh-hc-C-CceEEEEcccccC----cC---CC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAA-DL-E-LDIDFVQCDIRNL----EW---RG 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~-~~~v~~~D~~~~~~~~a~~~~~-~~-~-~~v~~~~~d~~~~----~~---~~ 112 (212)
++..++|+|||+|.-+..+... + ....+++|+|..+++.+..++. .. . +.+..+++|..+. +. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4568999999999854443321 1 3479999999999999999887 22 2 2566689988663 11 11
Q ss_pred cccEEEE-cCCCCCCCCCchHHHHHHHHh
Q 028214 113 HVDTVVM-NPPFGTRKKGVDMDFLSMALK 140 (212)
Q Consensus 113 ~~D~i~~-nppy~~~~~~~~~~~l~~~~~ 140 (212)
...++++ ...+.-..+.....+++...+
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 3555553 334444455566677877766
No 269
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.86 E-value=0.0069 Score=46.59 Aligned_cols=77 Identities=29% Similarity=0.396 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~ 126 (212)
+...|.|+|||.+.++..+.. .-+|...|+... +-.++..|+...|.++ +.|++|+-...+-
T Consensus 72 ~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vPL~~~svDv~VfcLSLMG- 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVPLEDESVDVAVFCLSLMG- 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S--TT-EEEEEEES---S-
T ss_pred CCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCcCCCCceeEEEEEhhhhC-
Confidence 456999999999999865442 237999998641 1236778988888877 8999998665442
Q ss_pred CCCchHHHHHHHHhhcC
Q 028214 127 KKGVDMDFLSMALKVAS 143 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~ 143 (212)
..-..++.++.++++
T Consensus 135 --Tn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 135 --TNWPDFIREANRVLK 149 (219)
T ss_dssp --S-HHHHHHHHHHHEE
T ss_pred --CCcHHHHHHHHheec
Confidence 123467777777765
No 270
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.85 E-value=0.015 Score=46.77 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh----c-----------------------------
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD----L----------------------------- 94 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~----~----------------------------- 94 (212)
.+.+||-+|||.|.++-++|..|. .+.|.|.|-.|+-...-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 456999999999999999999988 899999998886544332210 0
Q ss_pred --------CCceEEEEcccccCcCCC----cccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEE
Q 028214 95 --------ELDIDFVQCDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS 148 (212)
Q Consensus 95 --------~~~v~~~~~d~~~~~~~~----~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~ 148 (212)
+.+.....||+.+.-... +||+|++. |..-+..-...+++.+.++++ +++++
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 003566777777765444 89988875 332233334456665555554 34444
No 271
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.00082 Score=57.48 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC-----CcccEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-----GHVDTVV 118 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-----~~~D~i~ 118 (212)
++-+|||.-|++|..++-.++. +..+|++.|.++.+++..+.|++.++. .++..+.|+..+.-. ..||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999998888865 467899999999999999999999977 578888888765432 2899999
Q ss_pred EcCCCCCCCCCchHHHHHHHHhhcC
Q 028214 119 MNPPFGTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 119 ~nppy~~~~~~~~~~~l~~~~~~~~ 143 (212)
.|| .|....|++.++....
T Consensus 189 LDP------yGs~s~FLDsAvqav~ 207 (525)
T KOG1253|consen 189 LDP------YGSPSPFLDSAVQAVR 207 (525)
T ss_pred cCC------CCCccHHHHHHHHHhh
Confidence 997 4777889998886654
No 272
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0019 Score=55.83 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCCCcccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHH---c--CCCeEEEEeCChHHHHHHH-
Q 028214 15 QFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL---L--GADQVIAIDIDSDSLELAS- 88 (212)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~---~--~~~~v~~~D~~~~~~~~a~- 88 (212)
.|+++..++.+|. ..+..+++++.... ......+|+-+|+|.|-+.....+ . ..-+++++|.||.++-..+
T Consensus 337 tFEkD~VKY~~Yq--~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~ 413 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQ--QAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN 413 (649)
T ss_pred hhhccchHHHHHH--HHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh
Confidence 4555556666655 33555555554443 222255789999999976444333 2 2348999999999987664
Q ss_pred HHHhhcCCceEEEEcccccCcCC-CcccEEEEc
Q 028214 89 ENAADLELDIDFVQCDIRNLEWR-GHVDTVVMN 120 (212)
Q Consensus 89 ~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~n 120 (212)
.|.+..+.+|+++..|.+++..+ .+.|++++-
T Consensus 414 ~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 414 RNFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred hchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 45555555899999999999976 599999863
No 273
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.66 E-value=0.03 Score=44.06 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=84.8
Q ss_pred EEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc-----CcCCCcccEEEEcCCCCCC-
Q 028214 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-----LEWRGHVDTVVMNPPFGTR- 126 (212)
Q Consensus 53 lDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~-----~~~~~~~D~i~~nppy~~~- 126 (212)
+..-|||-.++..+.+. ..+..++|+.+.=....+.|+.. +.++.+.++|-.. +++..+=-+|+.||||...
T Consensus 93 l~~YpGSP~lA~~llR~-qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~ 170 (279)
T COG2961 93 LRYYPGSPLLARQLLRE-QDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD 170 (279)
T ss_pred cccCCCCHHHHHHHcch-hceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc
Confidence 89999999999888875 55899999999999999988873 2289999999664 3333467899999999876
Q ss_pred CCCchHHHHHHHHhhcCceEEEEecCch-HHHHHHHHHhhcCCcce
Q 028214 127 KKGVDMDFLSMALKVASQAVYSLHKTST-REHVKKAALRDFNASSA 171 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~~~~~ 171 (212)
+.......++++++.-..++|.++.|.. +..+.... +.++.-+.
T Consensus 171 eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~-~~L~~~~i 215 (279)
T COG2961 171 EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFL-RALEALGI 215 (279)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHH-HHHhhcCc
Confidence 3344456677777766678888887764 44444433 55653333
No 274
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.47 E-value=0.011 Score=49.55 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCCC-cccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~-~~D~i~~nppy 123 (212)
.++..++|+|||.|.....++....+.++|++.++..+..+........+ +-.+..+|+..-++++ .||.+.+.-.-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 35668999999999999999988777999999998777666555444333 3445888888887776 89988864332
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
.+. ......+.+..+...
T Consensus 189 ~~~--~~~~~~y~Ei~rv~k 206 (364)
T KOG1269|consen 189 CHA--PDLEKVYAEIYRVLK 206 (364)
T ss_pred ccC--CcHHHHHHHHhcccC
Confidence 221 233455666666654
No 275
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.26 E-value=0.011 Score=46.72 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=60.3
Q ss_pred EEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc-----CcCCCcccEEEEcCCCCCCC
Q 028214 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-----LEWRGHVDTVVMNPPFGTRK 127 (212)
Q Consensus 53 lDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~-----~~~~~~~D~i~~nppy~~~~ 127 (212)
+..-.||-.++..+.+. ..+.+.+|+.+.-.+..+.|+.... ++.+.+.|... +++..+=-+|+.||||....
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~~-~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~ 139 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRDR-RVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKD 139 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TTS--EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STT
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccCC-ccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCch
Confidence 77888888888888775 5699999999999999998887542 79999999875 33333677999999998763
Q ss_pred -CCchHHHHHHHHhhcCceEEEEecCc
Q 028214 128 -KGVDMDFLSMALKVASQAVYSLHKTS 153 (212)
Q Consensus 128 -~~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (212)
.......+.++++.-..++|.++.|-
T Consensus 140 dy~~v~~~l~~a~kR~~~G~~~iWYPi 166 (245)
T PF04378_consen 140 DYQRVVDALAKALKRWPTGVYAIWYPI 166 (245)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeec
Confidence 33444667777777677888888774
No 276
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.25 E-value=0.077 Score=41.08 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC---CcccEEEEcCCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---GHVDTVVMNPPF 123 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~nppy 123 (212)
.++.+||++|=|-|+....+.+.....-+-+|.+++.++.++.+.-....+|-+..+-+.+.... ..||-|+.|- |
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT-y 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT-Y 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec-h
Confidence 48899999999999999999888777889999999999999888655444787777777665432 2799999763 1
Q ss_pred CCCCCCchHHHHHHHHhhcC-ceEEEEecCch
Q 028214 124 GTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 154 (212)
.. ..+....+.+.+.+.++ .++|..++--+
T Consensus 179 ~e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 179 SE-LYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hh-HHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 11 12233456667777665 57777776543
No 277
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.18 E-value=0.031 Score=46.17 Aligned_cols=88 Identities=17% Similarity=0.078 Sum_probs=71.3
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCCCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~ 129 (212)
...+|+|+|.|.++..+... ..++-+++.+...+..++++.. .| |+.+-+|.+.-.+ +-|+|++--..|+-.++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P--~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTP--KGDAIWMKWILHDWTDE 252 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC--cceecccccccCC--CcCeEEEEeecccCChH
Confidence 68999999999999999885 4479999999877777777764 43 7888888776633 56799998888887788
Q ss_pred chHHHHHHHHhhcC
Q 028214 130 VDMDFLSMALKVAS 143 (212)
Q Consensus 130 ~~~~~l~~~~~~~~ 143 (212)
.-..+++++....+
T Consensus 253 dcvkiLknC~~sL~ 266 (342)
T KOG3178|consen 253 DCVKILKNCKKSLP 266 (342)
T ss_pred HHHHHHHHHHHhCC
Confidence 88889999887765
No 278
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.17 E-value=0.0023 Score=49.00 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHH
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~ 90 (212)
..+.++||+|+|.|-++..++-. ...|++.|+|..|....++.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence 35679999999999999988875 45799999998887666543
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.03 E-value=0.015 Score=39.83 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCC
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID 80 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~ 80 (212)
+++.++..........+....+|+|||.|.+.-.+.+.|. +-+|+|.-
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 3444444444443333456899999999999888888876 57788863
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.01 E-value=0.12 Score=39.75 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEcccccC
Q 028214 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL 108 (212)
Q Consensus 36 ~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~--~~v~~~~~d~~~~ 108 (212)
....+++. .+++.|+|+|.-.|.-++..|+. +..+|+|+|++........ .+... .+|++++||..+.
T Consensus 23 ~~qeli~~---~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 23 AYQELIWE---LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp HHHHHHHH---H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSST
T ss_pred HHHHHHHH---hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCH
Confidence 33444444 37899999999999988877753 3569999999754432222 12211 1799999998764
Q ss_pred cCC---------CcccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEecCchHHHHHH
Q 028214 109 EWR---------GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK 160 (212)
Q Consensus 109 ~~~---------~~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (212)
..- ....+|+.|.--. ..-....++........+.|.++...-.++...
T Consensus 98 ~~~~~v~~~~~~~~~vlVilDs~H~---~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~ 155 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVLVILDSSHT---HEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPE 155 (206)
T ss_dssp HHHHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHH
T ss_pred HHHHHHHHhhccCCceEEEECCCcc---HHHHHHHHHHhCccCCCCCEEEEEecccccccc
Confidence 321 1455777654211 123344555544444456677666554444433
No 281
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.89 E-value=0.04 Score=44.49 Aligned_cols=94 Identities=26% Similarity=0.304 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCcChH-HHHHHHc-C-CCeEEEEeCChHHHHHHHHHHh-hc--CCceEEEEcccccCcCCC-cccEEEEc
Q 028214 48 SNKVVADFGCGCGTL-GAAATLL-G-ADQVIAIDIDSDSLELASENAA-DL--ELDIDFVQCDIRNLEWRG-HVDTVVMN 120 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~-~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~-~~--~~~v~~~~~d~~~~~~~~-~~D~i~~n 120 (212)
.+++|+=+|||.=-+ ++.+++. + ...|+++|+|+.+++.+++-+. .. +.+++++.+|..+..... .||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999997654 5555543 3 3579999999999999998777 22 337999999998876443 89998874
Q ss_pred CCCCCCCCCchHHHHHHHHhhc
Q 028214 121 PPFGTRKKGVDMDFLSMALKVA 142 (212)
Q Consensus 121 ppy~~~~~~~~~~~l~~~~~~~ 142 (212)
.--. ++.......+....+..
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m 220 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHM 220 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS
T ss_pred hhcc-cccchHHHHHHHHHhhC
Confidence 3211 12224455666665543
No 282
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.72 E-value=0.0033 Score=42.96 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=23.8
Q ss_pred EEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC---CcccEEEEcCC
Q 028214 53 ADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR---GHVDTVVMNPP 122 (212)
Q Consensus 53 lDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~---~~~D~i~~npp 122 (212)
||+|+..|..++.+++. +..+++++|..+. .+.+++.++..+. ++++++++..+.... .++|+++.|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999887777753 1237999999984 2233333332222 699999998765322 28999999854
No 283
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.72 E-value=0.042 Score=42.11 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC-------C-ceEEEEcccccCcCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDIRNLEWR 111 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-------~-~v~~~~~d~~~~~~~ 111 (212)
+.-.+.|+|||-|.+.+.++-. +..-++|.||--...+..+.+++..+ . |+.+...+.+.+.+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn 132 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN 132 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence 3456899999999999999954 55678999998777777777776553 2 678888888876654
No 284
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.66 E-value=0.024 Score=49.04 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=39.3
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEE---eCChHHHHHHHHHHhhcCCceEEEEcc--cccCcCCC-cccEEEE
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAI---DIDSDSLELASENAADLELDIDFVQCD--IRNLEWRG-HVDTVVM 119 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~v~~~~~d--~~~~~~~~-~~D~i~~ 119 (212)
.++||+|||+|+++..+..++. .+..+ |..+..+++|.++ | +-.+.+- ...++.++ .||+|=|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----G--vpa~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----G--VPAMIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----C--cchhhhhhccccccCCccchhhhhc
Confidence 4799999999999999998854 23232 4445566666555 2 2222222 23455555 7888754
No 285
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.63 E-value=0.11 Score=41.45 Aligned_cols=81 Identities=26% Similarity=0.440 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~ 126 (212)
....|.|+|||-+-++. +. ..+|+..|+.. .+-.++..|+.+.|..+ +.|++|+=...+-
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg- 240 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG- 240 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeec--------------CCCceeeccccCCcCccCcccEEEeeHhhhc-
Confidence 45689999999998765 33 44899999853 13467888999998887 9999886444321
Q ss_pred CCCchHHHHHHHHhhcC--ceEEEE
Q 028214 127 KKGVDMDFLSMALKVAS--QAVYSL 149 (212)
Q Consensus 127 ~~~~~~~~l~~~~~~~~--~~~~~~ 149 (212)
.....++.++.++++ +.+|+.
T Consensus 241 --tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 241 --TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred --ccHHHHHHHHHHHhccCceEEEE
Confidence 122356777776654 345543
No 286
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.62 E-value=0.41 Score=35.57 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=55.3
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEE
Q 028214 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (212)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~ 102 (212)
+.||.-....+..+...+... ...+.+|+=+||=+-...+.-......+++-.|+|..--. .+.+ .++.
T Consensus 2 lsQfwYs~~T~~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~~-~F~f 70 (162)
T PF10237_consen 2 LSQFWYSDETAEFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGGD-EFVF 70 (162)
T ss_pred ccccccCHHHHHHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCCc-ceEE
Confidence 356666666666666555552 2356789999887766655552234558999999963322 2212 3444
Q ss_pred cccccCcC-----CCcccEEEEcCCCC
Q 028214 103 CDIRNLEW-----RGHVDTVVMNPPFG 124 (212)
Q Consensus 103 ~d~~~~~~-----~~~~D~i~~nppy~ 124 (212)
-|...... ..+||+|++||||-
T Consensus 71 yD~~~p~~~~~~l~~~~d~vv~DPPFl 97 (162)
T PF10237_consen 71 YDYNEPEELPEELKGKFDVVVIDPPFL 97 (162)
T ss_pred CCCCChhhhhhhcCCCceEEEECCCCC
Confidence 44443211 12899999999994
No 287
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.076 Score=44.08 Aligned_cols=120 Identities=11% Similarity=0.022 Sum_probs=70.4
Q ss_pred HHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-----ceEEEEccccc
Q 028214 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRN 107 (212)
Q Consensus 35 ~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~v~~~~~d~~~ 107 (212)
+.|..+.....+...++|||+|.|.|....++-.. + ...++.+|.|+..-+........... ...-+..|-.+
T Consensus 100 asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~ 179 (484)
T COG5459 100 ASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLS 179 (484)
T ss_pred HHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccC
Confidence 33444444446677889999999999877766654 2 34678888888665555443332221 23345556666
Q ss_pred CcCCCcccEEEEcCCCCCC-CCCchHHHHHHHHhhcC-ceEEEEecCch
Q 028214 108 LEWRGHVDTVVMNPPFGTR-KKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (212)
Q Consensus 108 ~~~~~~~D~i~~nppy~~~-~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 154 (212)
++..+.|++++..--.-+. ........+++...... ++.++++.+++
T Consensus 180 lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 180 LPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred CCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 6666688887753222221 22222235666665543 56677777654
No 288
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.52 E-value=0.056 Score=41.98 Aligned_cols=100 Identities=12% Similarity=0.156 Sum_probs=69.1
Q ss_pred HHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC------
Q 028214 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR------ 111 (212)
Q Consensus 38 ~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~------ 111 (212)
.+.....+....+.|+++|.|.|.++..+...+..+...+|+|+.-+.-.+...+....+...+++|++.+..+
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~~~ 119 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRFKIEKAFSES 119 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccceehHHhhcchh
Confidence 33444434457889999999999999999988888999999998777666655554444677788887754322
Q ss_pred ------C--cccEEEEcCCCCCCCCCchHHHHHHH
Q 028214 112 ------G--HVDTVVMNPPFGTRKKGVDMDFLSMA 138 (212)
Q Consensus 112 ------~--~~D~i~~nppy~~~~~~~~~~~l~~~ 138 (212)
+ ..=-|+.|.||.... ....+|++..
T Consensus 120 ~~Rpw~d~~p~~H~IGNLPf~i~~-pliik~l~~~ 153 (326)
T KOG0821|consen 120 LKRPWEDDPPNVHIIGNLPFSVST-PLIIKWLENI 153 (326)
T ss_pred hcCCcccCCCceEEeccCCccccc-hHHHHHHhhc
Confidence 1 123588999986542 2344555543
No 289
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.17 E-value=0.45 Score=41.19 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=61.6
Q ss_pred EEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCCCCCC
Q 028214 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~nppy~~~ 126 (212)
+++-+|||.--+...+..-|...++.+|+|+-.++.+...-..-.....+...|.....+++ +||+|+.=+-+++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 89999999999999999888889999999999998886544222225778889988888877 99999976666554
No 290
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.02 E-value=0.11 Score=36.75 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCcCh-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC--cccEEEE-cCCC
Q 028214 48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVM-NPPF 123 (212)
Q Consensus 48 ~~~~vlDlg~G~G~-~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~D~i~~-nppy 123 (212)
+..+++|+|.|.=. .+..+.++|. .|+++|+++. ++. . .+.++..|+.+...+- ..|+|++ +||
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~--g~~~v~DDif~P~l~iY~~a~lIYSiRPP- 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E--GVNFVVDDIFNPNLEIYEGADLIYSIRPP- 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------STTEE---SSS--HHHHTTEEEEEEES---
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c--CcceeeecccCCCHHHhcCCcEEEEeCCC-
Confidence 44599999999775 5666777775 8999999986 222 2 4778999998755432 7899997 776
Q ss_pred CCCCCCchHHHHHHHHhhcC
Q 028214 124 GTRKKGVDMDFLSMALKVAS 143 (212)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~ 143 (212)
.+.....++-+.+...
T Consensus 81 ----~El~~~il~lA~~v~a 96 (127)
T PF03686_consen 81 ----PELQPPILELAKKVGA 96 (127)
T ss_dssp ----TTSHHHHHHHHHHHT-
T ss_pred ----hHHhHHHHHHHHHhCC
Confidence 4455555554444443
No 291
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.80 E-value=0.16 Score=41.24 Aligned_cols=57 Identities=26% Similarity=0.336 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc
Q 028214 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (212)
Q Consensus 36 ~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (212)
++...... ....++.|+|+.+|+|..++.+...+. ..+|+|+++..++.+.+++...
T Consensus 211 l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 33344443 345889999999999999999998755 8999999999999999988754
No 292
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.78 E-value=0.16 Score=41.54 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=60.4
Q ss_pred CCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHH--hh---------------------------------
Q 028214 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA--AD--------------------------------- 93 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~--~~--------------------------------- 93 (212)
.-+||-+|||.|.++..++..|. .+-|-|.+-.|+-...-.+ -.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999998876 5777777766653222111 00
Q ss_pred ----cCC--ceEEEEcccccCcCCC----cccEEEEcCCCCCCCCCchHHHHHHHHhhcC-ceEEEEe
Q 028214 94 ----LEL--DIDFVQCDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH 150 (212)
Q Consensus 94 ----~~~--~v~~~~~d~~~~~~~~----~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 150 (212)
++. ....+.||+.+.-... .||+|+.. |..-+..-...+++.+.++++ +++++=+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeechHHHHHHHHHHHHhccCCcEEEec
Confidence 000 1233556666554333 59988876 333344455677777777764 4555433
No 293
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.63 E-value=0.03 Score=44.94 Aligned_cols=38 Identities=34% Similarity=0.477 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHH
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL 84 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~ 84 (212)
..+++|||+|||+|..++.+...+...+...|.|...+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 47899999999999999999988877899999988777
No 294
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.60 E-value=0.92 Score=36.46 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcCCC-CCCEEEEEcCCcCh--HHHHHHH--cCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccc
Q 028214 34 SRMLYTAENSFGDV-SNKVVADFGCGCGT--LGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (212)
Q Consensus 34 ~~~l~~~~~~~~~~-~~~~vlDlg~G~G~--~~~~~~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (212)
...+..+...+... .=...||+|||--. ..=++++ .+.++|+=+|.||-.+..++..+..+.. ...++++|+.+
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence 34455555554333 33689999999432 2333333 3567999999999999999988877652 48899999987
Q ss_pred CcC--C-----C-----cccEEEEcCCCCCCCC-CchHHHHHHHHhhcCceEEEEec
Q 028214 108 LEW--R-----G-----HVDTVVMNPPFGTRKK-GVDMDFLSMALKVASQAVYSLHK 151 (212)
Q Consensus 108 ~~~--~-----~-----~~D~i~~nppy~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 151 (212)
... . . +.=.+++....|+..+ ......+......+..+.|+.+.
T Consensus 133 p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 133 PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 432 1 1 3336788888887755 44456777777766655555444
No 295
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.40 E-value=0.13 Score=41.66 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccCcC---CCcccEE
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEW---RGHVDTV 117 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~---~~~~D~i 117 (212)
...++++-+|.|.|.+.++.+++. ..++.-+|+|...++..++-....- .++.+..||...+.. .+.||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 357899999999999999999874 4689999999999999988776542 278899999776543 3489999
Q ss_pred EEcCC--CCCCCCCchHHHHHHHHhhcCceEEEEecCch
Q 028214 118 VMNPP--FGTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (212)
Q Consensus 118 ~~npp--y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (212)
+.+.. -.....--...+.......+++..|.+.-...
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 97532 11111111123334444555555555554443
No 296
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.24 E-value=0.23 Score=41.73 Aligned_cols=42 Identities=29% Similarity=0.216 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~ 89 (212)
.-+.++|+|+|.|.++..++-...-.|.++|-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 446899999999999999996655699999999766655544
No 297
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.10 E-value=0.35 Score=38.54 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCEEEEEcCCcChHHHHHHHc---------CCCeEEEEeCChHHHHHHHHHHhh
Q 028214 49 NKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAAD 93 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~---------~~~~v~~~D~~~~~~~~a~~~~~~ 93 (212)
+-+|+|+|+|+|.++.-+.+. ...+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999998887753 124899999999998888887765
No 298
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.98 E-value=0.039 Score=44.35 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCce-EEEEcccccCcCCC-cccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v-~~~~~d~~~~~~~~-~~D~i~~nppy~~ 125 (212)
.+..++|.|||.|-.+.. .+...++|.|++...+..++.. +. ....+|+.+.+... +||.+++-..-||
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~------~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS------GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC------CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 477999999999965431 2445789999998888777654 33 68999999999877 9999998877777
Q ss_pred C-CCCchHHHHHHHHhhc
Q 028214 126 R-KKGVDMDFLSMALKVA 142 (212)
Q Consensus 126 ~-~~~~~~~~l~~~~~~~ 142 (212)
. ........+++..+..
T Consensus 116 lsT~~RR~~~l~e~~r~l 133 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVL 133 (293)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 6 3333444555555443
No 299
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.94 E-value=0.18 Score=42.26 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCCC---cccEEE
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG---HVDTVV 118 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~---~~D~i~ 118 (212)
...++.+|+|..|..|.-+..++.. ...+++|.|.+.+-.+..++.+...|. .++...+|+...+... ....|+
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~iL 289 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYIL 289 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEEE
Confidence 4456789999999999987777743 356899999999999999999988888 5777799998853322 567899
Q ss_pred EcCCCCCC
Q 028214 119 MNPPFGTR 126 (212)
Q Consensus 119 ~nppy~~~ 126 (212)
+||+..-.
T Consensus 290 ~DpscSgS 297 (413)
T KOG2360|consen 290 VDPSCSGS 297 (413)
T ss_pred eCCCCCCC
Confidence 99998654
No 300
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=93.91 E-value=0.11 Score=35.72 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCCCC------------CchHHHHHHHHhhc
Q 028214 113 HVDTVVMNPPFGTRKK------------GVDMDFLSMALKVA 142 (212)
Q Consensus 113 ~~D~i~~nppy~~~~~------------~~~~~~l~~~~~~~ 142 (212)
+||+|+.||||..... .....++..++..+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll 43 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL 43 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh
Confidence 5999999999977631 12234777777666
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=0.43 Score=39.89 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=50.0
Q ss_pred ccCCCChHHH-------HHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc---------CCCeEEEEeCChHHHHHH
Q 028214 24 EQYPTGPHIA-------SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELA 87 (212)
Q Consensus 24 ~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~---------~~~~v~~~D~~~~~~~~a 87 (212)
.+|.|.+.+. +.-+...+..++...+-.++|+|+|+|.++.-+.+. ...++.-+|+|+...+.=
T Consensus 46 GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Q 125 (370)
T COG1565 46 GDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQ 125 (370)
T ss_pred CCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHH
Confidence 3577766553 333444455545555678999999999987777653 245899999999988777
Q ss_pred HHHHhhc
Q 028214 88 SENAADL 94 (212)
Q Consensus 88 ~~~~~~~ 94 (212)
+++++..
T Consensus 126 k~~L~~~ 132 (370)
T COG1565 126 KETLKAT 132 (370)
T ss_pred HHHHhcc
Confidence 7777654
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=93.60 E-value=0.25 Score=40.10 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=22.7
Q ss_pred ceEEEEcccccCc---CCCcccEEEEcCCCCC
Q 028214 97 DIDFVQCDIRNLE---WRGHVDTVVMNPPFGT 125 (212)
Q Consensus 97 ~v~~~~~d~~~~~---~~~~~D~i~~nppy~~ 125 (212)
+..++++|+.+.. ...++|+|++||||..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence 4578999998853 2238999999999964
No 303
>PTZ00357 methyltransferase; Provisional
Probab=93.59 E-value=0.2 Score=45.28 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=47.2
Q ss_pred EEEEEcCCcChHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHH---hhc-------CCceEEEEcccccCcCCC---
Q 028214 51 VVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENA---ADL-------ELDIDFVQCDIRNLEWRG--- 112 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~~~----~-~~~v~~~D~~~~~~~~a~~~~---~~~-------~~~v~~~~~d~~~~~~~~--- 112 (212)
.|+-+|+|.|-+...+.+. + .-+++++|.|+.++.....+. ..+ |..|+++..|...+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999764333322 3 238999999977655544443 222 225899999999985431
Q ss_pred ---------cccEEEE
Q 028214 113 ---------HVDTVVM 119 (212)
Q Consensus 113 ---------~~D~i~~ 119 (212)
++|+||+
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 6999997
No 304
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.50 E-value=0.24 Score=38.43 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=50.2
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----CcccEEEEcCCCCC
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----GHVDTVVMNPPFGT 125 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~nppy~~ 125 (212)
-++||+||=+....+.. .+.-.|+.||+++. .-.+.+.|+++.+.+ ++||+|.+......
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~--------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ--------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC--------------CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 58999999866544432 23336999999861 245788898887653 28999999887765
Q ss_pred CCCCch-HHHHHHHHhhc
Q 028214 126 RKKGVD-MDFLSMALKVA 142 (212)
Q Consensus 126 ~~~~~~-~~~l~~~~~~~ 142 (212)
...... -..+.++...+
T Consensus 117 VP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 533222 24455555444
No 305
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.44 E-value=0.28 Score=38.75 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHH----HHHHHHHHhhcCCceEEEEcccccCcCCC----cccE
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDS----LELASENAADLELDIDFVQCDIRNLEWRG----HVDT 116 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~----~~~a~~~~~~~~~~v~~~~~d~~~~~~~~----~~D~ 116 (212)
.++.+||=||+++|..-..+... +..-|+++|.++.+ +..|+++. |+-.+..|+.-.-..- -.|+
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt-----NiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT-----NIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-----CceeeeccCCCchheeeeeeeEEE
Confidence 47899999999999977776654 34579999988544 33333332 7888888887654322 6899
Q ss_pred EEEcCC
Q 028214 117 VVMNPP 122 (212)
Q Consensus 117 i~~npp 122 (212)
|++|-+
T Consensus 230 IFaDva 235 (317)
T KOG1596|consen 230 IFADVA 235 (317)
T ss_pred EeccCC
Confidence 998765
No 306
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.40 E-value=0.16 Score=40.29 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHH
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELAS 88 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~ 88 (212)
...+++|++||+|.++..+... ...|+..|+++..+.+.+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence 5789999999999999988764 558999999987765554
No 307
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.22 E-value=0.16 Score=42.69 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhh-------cCC---ceEEEE
Q 028214 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-------LEL---DIDFVQ 102 (212)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~-------~~~---~v~~~~ 102 (212)
.+-+......++..+++...|+|+|.|....+.+.. ++..-+|+++....-+.|..+... .|. .++.++
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~ 257 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH 257 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecc
Confidence 333444555556678899999999999987777754 567888999876666555554432 232 578899
Q ss_pred cccccCcCCC----cccEEEEcCC
Q 028214 103 CDIRNLEWRG----HVDTVVMNPP 122 (212)
Q Consensus 103 ~d~~~~~~~~----~~D~i~~npp 122 (212)
+++.+..... ..++|++|-.
T Consensus 258 gsf~~~~~v~eI~~eatvi~vNN~ 281 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQTEATVIFVNNV 281 (419)
T ss_pred cccCCHHHHHHHhhcceEEEEecc
Confidence 9987654322 6888888754
No 308
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.35 E-value=0.69 Score=35.42 Aligned_cols=82 Identities=18% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHc-C-CCeEEEEeCChHHH----HHHHHHHhh--cCC-ceEEEEcccccCcCCCccc
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSL----ELASENAAD--LEL-DIDFVQCDIRNLEWRGHVD 115 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~-~-~~~v~~~D~~~~~~----~~a~~~~~~--~~~-~v~~~~~d~~~~~~~~~~D 115 (212)
+..++.+|+|+-.|.|.++..++.. + ...|++.-.++... +..+.+... ... |++.+-.+...+......|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 4457899999999999999988865 3 34677765543311 111111111 111 5666666666666555788
Q ss_pred EEEEcCCCCCC
Q 028214 116 TVVMNPPFGTR 126 (212)
Q Consensus 116 ~i~~nppy~~~ 126 (212)
+++.+.-||..
T Consensus 125 ~~~~~~~yhdm 135 (238)
T COG4798 125 LVPTAQNYHDM 135 (238)
T ss_pred ccccchhhhhh
Confidence 88888777765
No 309
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.09 E-value=1 Score=36.70 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC---------C-
Q 028214 46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---------G- 112 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------~- 112 (212)
...++.||=-|+|+|. ++.+++++++ +++.+|++++..+...+.++..| ++.....|+.+...- +
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 3578899999999995 6788888877 89999999999988888888766 677788887764321 1
Q ss_pred -cccEEEEcCCCCC
Q 028214 113 -HVDTVVMNPPFGT 125 (212)
Q Consensus 113 -~~D~i~~nppy~~ 125 (212)
..|+++.|.--.+
T Consensus 113 G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 113 GDVDILVNNAGIVT 126 (300)
T ss_pred CCceEEEecccccc
Confidence 6888887765433
No 310
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.52 E-value=3 Score=35.47 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=48.1
Q ss_pred CEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC----cccEEEEcC
Q 028214 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG----HVDTVVMNP 121 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~----~~D~i~~np 121 (212)
++||-+|| |.++..++ +.+..+|+..|-+.+.++.+...... +++.++.|+.+...-. .+|+|+.=.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 46888998 44444433 34546999999998888877666533 5888999988774321 679888644
Q ss_pred CC
Q 028214 122 PF 123 (212)
Q Consensus 122 py 123 (212)
|+
T Consensus 77 p~ 78 (389)
T COG1748 77 PP 78 (389)
T ss_pred Cc
Confidence 44
No 311
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.24 E-value=0.57 Score=38.62 Aligned_cols=45 Identities=31% Similarity=0.447 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEcCCc-ChHHHHHHH-cCCCeEEEEeCChHHHHHHHH
Q 028214 45 GDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~-G~~~~~~~~-~~~~~v~~~D~~~~~~~~a~~ 89 (212)
+-..+.++|-+|+|. |..+...|+ .|+.+|+.+|+++..++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 335788999999995 666666665 488899999999999999998
No 312
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.19 E-value=0.46 Score=38.00 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (212)
+..++.++||+|||.-......+.....+++..|..+.-.+..++.++
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 455788999999999877665555456789999999888876666553
No 313
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.61 E-value=0.47 Score=36.06 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCcChHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEc-ccccCc---------CCCccc
Q 028214 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQC-DIRNLE---------WRGHVD 115 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~-d~~~~~---------~~~~~D 115 (212)
++.+|||+||..|.-+-.+.+. +...|.|+|+..- ..-. .++++++ |+.+.. +.-..|
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~--Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE--GATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC--CcccccccccCCHHHHHHHHHhCCCCccc
Confidence 6889999999999988887765 4568999998421 0001 2444444 444321 112799
Q ss_pred EEEEcCCC
Q 028214 116 TVVMNPPF 123 (212)
Q Consensus 116 ~i~~nppy 123 (212)
+|++|..=
T Consensus 139 vVlSDMap 146 (232)
T KOG4589|consen 139 VVLSDMAP 146 (232)
T ss_pred EEEeccCC
Confidence 99998653
No 314
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=89.97 E-value=2.7 Score=30.48 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=50.1
Q ss_pred EEEEEcCCcCh---HHHHHHHcCCCeEEEEeCC--hHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Ccc
Q 028214 51 VVADFGCGCGT---LGAAATLLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (212)
Q Consensus 51 ~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~ 114 (212)
++|=.|+++|. ++..+++.+...|+.+.-+ ....+.....++..+.++.+++.|+.+...- ...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l 81 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPL 81 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56667766543 3444444456688888888 5555555555555556899999998754221 279
Q ss_pred cEEEEcCCCCCC
Q 028214 115 DTVVMNPPFGTR 126 (212)
Q Consensus 115 D~i~~nppy~~~ 126 (212)
|+++.|......
T Consensus 82 d~li~~ag~~~~ 93 (167)
T PF00106_consen 82 DILINNAGIFSD 93 (167)
T ss_dssp SEEEEECSCTTS
T ss_pred cccccccccccc
Confidence 999988877653
No 315
>PRK13699 putative methylase; Provisional
Probab=89.01 E-value=0.22 Score=39.09 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=21.3
Q ss_pred eEEEEcccccCc--CC-CcccEEEEcCCCCC
Q 028214 98 IDFVQCDIRNLE--WR-GHVDTVVMNPPFGT 125 (212)
Q Consensus 98 v~~~~~d~~~~~--~~-~~~D~i~~nppy~~ 125 (212)
.+++++|+.+.. .+ .++|+|++||||..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i 32 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLV 32 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCccc
Confidence 367889987753 22 39999999999963
No 316
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=88.21 E-value=0.72 Score=42.22 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (212)
.+..++|..+|-|++.+++.+.|. .|+++|++|-+.-+.+..++
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHh
Confidence 456899999999999999999985 89999999999877666553
No 317
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.00 E-value=11 Score=29.35 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCcC----hHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccc-ccCcCCC-cccEEE
Q 028214 48 SNKVVADFGCGCG----TLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRG-HVDTVV 118 (212)
Q Consensus 48 ~~~~vlDlg~G~G----~~~~~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~-~~~~~~~-~~D~i~ 118 (212)
+-+.+++..|+-| .+++.+|. +-..+++.+-.++......++.+...+. .++|+.++. .++...- ..|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 5677888865543 23333342 3345899999998888788888877665 369998884 3333322 799999
Q ss_pred EcC
Q 028214 119 MNP 121 (212)
Q Consensus 119 ~np 121 (212)
.|.
T Consensus 121 VDc 123 (218)
T PF07279_consen 121 VDC 123 (218)
T ss_pred EeC
Confidence 875
No 318
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.51 E-value=2 Score=29.39 Aligned_cols=59 Identities=27% Similarity=0.422 Sum_probs=40.6
Q ss_pred CCcChHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---CC--cccEEEEcC
Q 028214 57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RG--HVDTVVMNP 121 (212)
Q Consensus 57 ~G~G~~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~~--~~D~i~~np 121 (212)
||.|.++..+++. +..+|+.+|.++..++.++.. .+.++.+|..+... .. +.|.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 5667777777643 344899999999998877665 36789999887532 11 788777653
No 319
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.45 E-value=5.1 Score=27.95 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=45.0
Q ss_pred CCEEEEEcCCcCh-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC--cccEEEEc
Q 028214 49 NKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVMN 120 (212)
Q Consensus 49 ~~~vlDlg~G~G~-~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~D~i~~n 120 (212)
..+|+++|.|.=. ++..++++|. .++++|+++. +.. . .+++...|+.+...+- ..|+|++-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~-~--g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP-E--GLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc-c--cceEEEccCCCccHHHhhCccceeec
Confidence 3489999988664 5667777775 8999999986 222 2 4788999998765543 78888873
No 320
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.21 E-value=5.5 Score=30.91 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
++++++-.|++ |.++..++ +.|. +|+.++.++...+.+.+.+...+.++.+++.|+.+.... .
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57789988864 44444443 3454 799999988766666555554444677888887653211 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
..|.|+.+...
T Consensus 82 ~id~vi~~ag~ 92 (253)
T PRK08217 82 QLNGLINNAGI 92 (253)
T ss_pred CCCEEEECCCc
Confidence 57999988654
No 321
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.72 E-value=5.5 Score=31.22 Aligned_cols=77 Identities=23% Similarity=0.213 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.++.++...+.....++..+.++.++..|+.+...- .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 367889999976654 3334444455 899999988777766666554444677888888764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
+.|.++.|....
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 689999887654
No 322
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.67 E-value=12 Score=28.34 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=54.9
Q ss_pred ccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHH--cCCCeEEEEeCChHHHHHHHHHHhhcCCc
Q 028214 20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLELD 97 (212)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~~ 97 (212)
.|.+.||.-.+..+..++...... ...+.+|--+.|-+=.+-..... .+..+|+-.|.|. ++...|
T Consensus 47 DwQlsqfwy~~eta~~La~e~v~~--s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDk--------RFe~yg-- 114 (217)
T KOG3350|consen 47 DWQLSQFWYSDETARKLAAERVEA--SGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDK--------RFELYG-- 114 (217)
T ss_pred chhhhhhhcCHHHHHHHHHHHHhh--cccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehh--------hHHhcc--
Confidence 466777776666666665555543 22445666666554331111111 1345888888874 344443
Q ss_pred eEEEEcccccCcC-C----CcccEEEEcCCCCCC
Q 028214 98 IDFVQCDIRNLEW-R----GHVDTVVMNPPFGTR 126 (212)
Q Consensus 98 v~~~~~d~~~~~~-~----~~~D~i~~nppy~~~ 126 (212)
-+|+.-|...... + ..||+|+.||||-..
T Consensus 115 ~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~ 148 (217)
T KOG3350|consen 115 TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSE 148 (217)
T ss_pred ceeEEeccCCCCCCHHHHHhcccEEEeCCccccc
Confidence 4566666554321 1 189999999999754
No 323
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.51 E-value=4.4 Score=34.45 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh
Q 028214 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 93 (212)
+..++++||-+.+|-....-.+.. ++++|++||+||......+-....
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHHH
Confidence 345788999998665555555554 577999999999998887766543
No 324
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.03 E-value=6.9 Score=31.03 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccCcCC----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~v~~~~~d~~~~~~~----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.++.++...+.+.+.+... +.++.++..|+.+...- .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 367888988877664 3444445555 8999999987776666555432 33677888888764321 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
..|+++.|.-.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 47888887643
No 325
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.89 E-value=2.4 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCc-Ch-HHHHHHHcCCCeEEEEeCC
Q 028214 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDID 80 (212)
Q Consensus 48 ~~~~vlDlg~G~-G~-~~~~~~~~~~~~v~~~D~~ 80 (212)
.+.+|+=+|||. |. ++..+++.|..+++.+|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 678999999983 44 4556667788899999976
No 326
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.85 E-value=2.1 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=30.3
Q ss_pred EEcCCcC--hHHHHHH--Hc-CCCeEEEEeCChHHHHHHHHH--HhhcCC--ceEEEEccc
Q 028214 54 DFGCGCG--TLGAAAT--LL-GADQVIAIDIDSDSLELASEN--AADLEL--DIDFVQCDI 105 (212)
Q Consensus 54 Dlg~G~G--~~~~~~~--~~-~~~~v~~~D~~~~~~~~a~~~--~~~~~~--~v~~~~~d~ 105 (212)
|+|++.| ....... .. ...+|+++|.++..++..+.+ +..+.. .+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555443 23 356899999999999999988 444322 344444433
No 327
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.77 E-value=7.4 Score=30.56 Aligned_cols=76 Identities=25% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh--cCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~v~~~~~d~~~~~~~---------- 111 (212)
..++++|-.|++.|. +...+++.|. +|+.++.++...+...+.+.. .+.++.++..|+.+...-
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467889988876553 2333444455 899999988877766666554 233677888888764321
Q ss_pred -CcccEEEEcCCC
Q 028214 112 -GHVDTVVMNPPF 123 (212)
Q Consensus 112 -~~~D~i~~nppy 123 (212)
...|.++.|.-.
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 158999987654
No 328
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.70 E-value=0.27 Score=42.52 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=50.2
Q ss_pred CCEEEEEcCCcChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcC-------CC-cccEEE
Q 028214 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-------RG-HVDTVV 118 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~-------~~-~~D~i~ 118 (212)
+.+++-+|-|.|.+...+... +...+++++++|.+++.|.++.....- +..+...|..++.. .+ .||+++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 457888999999998888744 556899999999999999998753321 23344444433221 12 899998
Q ss_pred Ec
Q 028214 119 MN 120 (212)
Q Consensus 119 ~n 120 (212)
.|
T Consensus 376 ~d 377 (482)
T KOG2352|consen 376 VD 377 (482)
T ss_pred EE
Confidence 64
No 329
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.39 E-value=2.3 Score=35.62 Aligned_cols=45 Identities=38% Similarity=0.474 Sum_probs=36.0
Q ss_pred CCCCEEEEEcCCc-ChHHHHHHHc-CCCeEEEEeCChHHHHHHHHHH
Q 028214 47 VSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASENA 91 (212)
Q Consensus 47 ~~~~~vlDlg~G~-G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~~ 91 (212)
.++.+++-+|||. |.+++.+++. |+.+|+++|.+++.++.|++..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 3455899999995 6666666654 7789999999999999998854
No 330
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.36 E-value=7.5 Score=30.35 Aligned_cols=77 Identities=25% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.++++++-.|++.|. +...+++.|. +|+.++.++...+...+.+...+.++.++..|+.+...- .
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 357889999965443 2333334454 899999988776666655555444688889998764311 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
+.|.++.+.-+.
T Consensus 84 ~id~li~~ag~~ 95 (253)
T PRK06172 84 RLDYAFNNAGIE 95 (253)
T ss_pred CCCEEEECCCCC
Confidence 569999887653
No 331
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.31 E-value=2.3 Score=35.48 Aligned_cols=50 Identities=32% Similarity=0.386 Sum_probs=38.6
Q ss_pred hhcCCCCCCEEEEEcCC-cChHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHh
Q 028214 42 NSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAA 92 (212)
Q Consensus 42 ~~~~~~~~~~vlDlg~G-~G~~~~~~~~-~~~~~v~~~D~~~~~~~~a~~~~~ 92 (212)
...+..++++|+-.|+| .|..++.+++ .+ .+|+++|.+++-.+.|++--.
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA 211 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA 211 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC
Confidence 33345678999999988 3347777886 56 699999999999999988743
No 332
>PRK08303 short chain dehydrogenase; Provisional
Probab=85.25 E-value=5.4 Score=32.65 Aligned_cols=74 Identities=22% Similarity=0.149 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCCh----------HHHHHHHHHHhhcCCceEEEEcccccCcCC--
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS----------DSLELASENAADLELDIDFVQCDIRNLEWR-- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~----------~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-- 111 (212)
..+++++-.|++.|+ +...+++.|. +|+.++.+. +.++.+.+.+...+.++.+++.|+.+...-
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 467899999977664 3333444455 788888762 334444444444444567788888764321
Q ss_pred ---------CcccEEEEcC
Q 028214 112 ---------GHVDTVVMNP 121 (212)
Q Consensus 112 ---------~~~D~i~~np 121 (212)
...|+++.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 1579999887
No 333
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.18 E-value=8 Score=30.96 Aligned_cols=77 Identities=29% Similarity=0.350 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
..++++|-.|+++|. +...+++.|. +|+.++.++..++.+.+.+...+.++.++..|+.+...- .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 367788888866553 2333344455 799999988777665555554444677888898764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|....
T Consensus 83 ~id~li~nAg~~ 94 (275)
T PRK05876 83 HVDVVFSNAGIV 94 (275)
T ss_pred CCCEEEECCCcC
Confidence 479999888653
No 334
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=84.95 E-value=0.75 Score=36.37 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcChHH--HHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC----cccEEEEcCC
Q 028214 49 NKVVADFGCGCGTLG--AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG----HVDTVVMNPP 122 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~--~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~----~~D~i~~npp 122 (212)
+-+|+++-+|.|..- ...+..++.-|-++|+|+-+-+.-.-|.-.+- +...|+..+..++ ++|++++.||
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L----~k~~~I~~lt~kefd~l~~~m~lMSPp 78 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNL----VKTRNIQSLTVKEFDKLQANMLLMSPP 78 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccch----hhccccceeeHhhhhhcccceEeeCCC
Confidence 457899999999864 44444456678899999988777666622111 1222222222221 7999999999
Q ss_pred CCCC
Q 028214 123 FGTR 126 (212)
Q Consensus 123 y~~~ 126 (212)
..+.
T Consensus 79 CQPf 82 (338)
T KOG0919|consen 79 CQPF 82 (338)
T ss_pred CCch
Confidence 9876
No 335
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.75 E-value=6.7 Score=32.12 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~---------- 111 (212)
..+++++-.|+++|+ ++..+++.|. +|+.+.-++...+.+.+.+... +.++.++..|+.+...-
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467888888876654 3334444554 8999988877666555544332 22678888998764321
Q ss_pred -CcccEEEEcCCC
Q 028214 112 -GHVDTVVMNPPF 123 (212)
Q Consensus 112 -~~~D~i~~nppy 123 (212)
...|+++.|.-.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 158999988754
No 336
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.67 E-value=10 Score=29.70 Aligned_cols=75 Identities=28% Similarity=0.342 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|=.| |+|.++..+++ .|. +|+.++-+....+.....+...+.++.++.+|+.+...-
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3678899888 45555555553 355 899999988777766666555444677889998864321
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
...|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 157999988765
No 337
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.50 E-value=8.3 Score=27.43 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=46.6
Q ss_pred CCCCCCEEEEEcCCcCh--HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-CcccEEEEcC
Q 028214 45 GDVSNKVVADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMNP 121 (212)
Q Consensus 45 ~~~~~~~vlDlg~G~G~--~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~np 121 (212)
+..++++++=+|+|--. ....++..|..+++.+.-+.+..+...+.+.. ..++++..+ ++... ..+|+|+.-.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~--~~~~~~~~~--~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG--VNIEAIPLE--DLEEALQEADIVINAT 83 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG--CSEEEEEGG--GHCHHHHTESEEEE-S
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc--cccceeeHH--HHHHHHhhCCeEEEec
Confidence 45689999999987443 33344455787899999887655554444422 145555443 22211 1799999877
Q ss_pred CCC
Q 028214 122 PFG 124 (212)
Q Consensus 122 py~ 124 (212)
|-.
T Consensus 84 ~~~ 86 (135)
T PF01488_consen 84 PSG 86 (135)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 338
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.45 E-value=1.1 Score=36.24 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=25.1
Q ss_pred ceEEEEcccccCcC-CCcc-cEEEEcCCCCCC
Q 028214 97 DIDFVQCDIRNLEW-RGHV-DTVVMNPPFGTR 126 (212)
Q Consensus 97 ~v~~~~~d~~~~~~-~~~~-D~i~~nppy~~~ 126 (212)
++++.++|+.+... ..+- |+|++||||.+.
T Consensus 156 ~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~ 187 (274)
T COG0338 156 NATIENGDFEEVLADADSGDDFVYCDPPYLPL 187 (274)
T ss_pred cCeEEcCCHHHHHhhccCCCcEEEeCCCCCcc
Confidence 58999999998876 3355 899999999885
No 339
>PRK07035 short chain dehydrogenase; Provisional
Probab=84.31 E-value=9.1 Score=29.86 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|=.|++.|. +...+++.|. +|+.++.++...+...+.+...+.++.+++.|+.+...- .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356788888877664 3344445555 899999988777666655554444567778887654321 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
+.|+++.+..+
T Consensus 85 ~id~li~~ag~ 95 (252)
T PRK07035 85 RLDILVNNAAA 95 (252)
T ss_pred CCCEEEECCCc
Confidence 57999977764
No 340
>PRK14851 hypothetical protein; Provisional
Probab=84.29 E-value=4.4 Score=37.19 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=62.1
Q ss_pred CchHHHHHHhccCCCCCCcccccccCCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEe
Q 028214 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCG-CGT-LGAAATLLGADQVIAID 78 (212)
Q Consensus 1 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D 78 (212)
|+...|.+.+.+++-........+.|...-.+... ... ...++.+|+-+||| .|+ ++..+++.|..+++-+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ry~R~~~l~g~---e~Q---~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD 74 (679)
T PRK14851 1 MKIDSHLETLQTLGISSAAEYREAAFSRNIGLFTP---GEQ---ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIAD 74 (679)
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHhhhhHHhcCH---HHH---HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEc
Confidence 56777777777666433322333333322111100 111 12367899999998 676 46666677888888888
Q ss_pred CChH-------------------HHHHHHHHHhhcCC--ceEEEEcccccCcCC---CcccEEEE
Q 028214 79 IDSD-------------------SLELASENAADLEL--DIDFVQCDIRNLEWR---GHVDTVVM 119 (212)
Q Consensus 79 ~~~~-------------------~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~---~~~D~i~~ 119 (212)
.|.- -.+.+++.+...+. +++.+...+...... ..+|+|+.
T Consensus 75 ~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid 139 (679)
T PRK14851 75 FDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLD 139 (679)
T ss_pred CCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEE
Confidence 5411 12344444444332 666666665432111 27999884
No 341
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.21 E-value=0.75 Score=36.78 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeC
Q 028214 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI 79 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~ 79 (212)
..+++.++|+++|||.++..+-.++. .|++-|+
T Consensus 25 ~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDl 57 (330)
T COG3392 25 DLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDL 57 (330)
T ss_pred ccCCCeeeeeccCccHHHHHHHHhcc-hhhhchH
Confidence 34778999999999999999998865 7888886
No 342
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.99 E-value=8.6 Score=29.88 Aligned_cols=73 Identities=21% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C-
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G- 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~- 112 (212)
++++++=.|++.|. +...+++.|. +|+.++.++..++.+.+.+...+..+..+..|+.+...- .
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 57889999988876 4555555555 799999998888777666655444555666676543211 2
Q ss_pred cccEEEEcC
Q 028214 113 HVDTVVMNP 121 (212)
Q Consensus 113 ~~D~i~~np 121 (212)
..|+++.|.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 588999886
No 343
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=83.88 E-value=3.9 Score=27.38 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=34.9
Q ss_pred CEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCC-cccEEEEcCC
Q 028214 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPP 122 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~i~~npp 122 (212)
++|| +.||+|..+..++. ..++.++.+|..+++.+.+..++.... .+|+|+.-|.
T Consensus 4 ~~IL-l~C~~G~sSS~l~~-----------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pq 59 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN-----------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQ 59 (95)
T ss_pred cEEE-EECCCchhHHHHHH-----------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECch
Confidence 3455 77888865554442 234444556667778777776654322 7999999775
No 344
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=83.84 E-value=8.1 Score=31.44 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=43.0
Q ss_pred CCCCEEEEEcCCcCh-HHH--HHHHcCCCeEEEEeCCh---HHHHHHHHHHhhcCCceEEEEcccccCcC--C--CcccE
Q 028214 47 VSNKVVADFGCGCGT-LGA--AATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNLEW--R--GHVDT 116 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~-~~~--~~~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~v~~~~~d~~~~~~--~--~~~D~ 116 (212)
.++++++=+|+| |. .++ .++..|..+|+.++.++ +..+...+.+...+..+.+...|+.+... . ..+|+
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 467889999987 54 222 23345776799999885 22332223332222123344445443211 1 15799
Q ss_pred EEEcCCCCCC
Q 028214 117 VVMNPPFGTR 126 (212)
Q Consensus 117 i~~nppy~~~ 126 (212)
|+.+-|-...
T Consensus 203 lINaTp~Gm~ 212 (289)
T PRK12548 203 LVNATLVGMK 212 (289)
T ss_pred EEEeCCCCCC
Confidence 9988776543
No 345
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.79 E-value=10 Score=29.63 Aligned_cols=76 Identities=24% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..+++++-.|++.| ++..++ +.|. +|+.++.+++..+.....++..+.++.++..|+.+...-
T Consensus 9 ~~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 9 LAGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46788998886544 444433 4455 899999988776666555555444678888887764321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
.+.|.++.+.-..
T Consensus 87 ~~id~vi~~ag~~ 99 (256)
T PRK06124 87 GRLDILVNNVGAR 99 (256)
T ss_pred CCCCEEEECCCCC
Confidence 1568999877653
No 346
>PRK05866 short chain dehydrogenase; Provisional
Probab=83.73 E-value=9.6 Score=30.86 Aligned_cols=74 Identities=28% Similarity=0.387 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcChHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++=.|++.| ++..+ ++.|. +|+.++.+++..+...+.+...+..+.++..|+.+...- .
T Consensus 39 ~~k~vlItGasgg-IG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5678888886554 34443 34444 899999998777666665554444677888888764311 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
..|+++.|.-.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 57999987654
No 347
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.35 E-value=11 Score=29.50 Aligned_cols=75 Identities=29% Similarity=0.298 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
.+++++=.|++.|. +...++..|. +|+.++.++...+.+...+...+.++.++..|+.+...- ..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 56788888865543 2333444455 899999988776666555554444678889888754321 15
Q ss_pred ccEEEEcCCC
Q 028214 114 VDTVVMNPPF 123 (212)
Q Consensus 114 ~D~i~~nppy 123 (212)
.|.++.+.-+
T Consensus 83 ~d~vi~~ag~ 92 (258)
T PRK07890 83 VDALVNNAFR 92 (258)
T ss_pred ccEEEECCcc
Confidence 7999987754
No 348
>PRK06194 hypothetical protein; Provisional
Probab=83.31 E-value=10 Score=30.29 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
+++++|=.|+ +|.++..++ +.|. +|+.+|.++...+.....+...+.++.++.+|+.+...- .
T Consensus 5 ~~k~vlVtGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITGA-ASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678887774 455444444 3454 899999887766555554444344678899998764221 1
Q ss_pred cccEEEEcCCCCC
Q 028214 113 HVDTVVMNPPFGT 125 (212)
Q Consensus 113 ~~D~i~~nppy~~ 125 (212)
..|+|+.|.-...
T Consensus 83 ~id~vi~~Ag~~~ 95 (287)
T PRK06194 83 AVHLLFNNAGVGA 95 (287)
T ss_pred CCCEEEECCCCCC
Confidence 4799998876643
No 349
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.03 E-value=11 Score=29.83 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
++++++-.|++.|. +...++..|. +|+.++.++..++.+...++..+.++.++..|+.+...- ..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 67789998877654 2333444555 788889888777766666665554678888998764321 15
Q ss_pred ccEEEEcCCCCC
Q 028214 114 VDTVVMNPPFGT 125 (212)
Q Consensus 114 ~D~i~~nppy~~ 125 (212)
.|.++.+..+..
T Consensus 88 id~li~~ag~~~ 99 (265)
T PRK07097 88 IDILVNNAGIIK 99 (265)
T ss_pred CCEEEECCCCCC
Confidence 899998876643
No 350
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=83.01 E-value=5.9 Score=32.45 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc
Q 028214 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (212)
.+.+|.-+|+|-..+...+++. +.+|.++|+|+..+...+..+...
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHHH
Confidence 5679999999988788888876 559999999999998887776654
No 351
>PRK07904 short chain dehydrogenase; Provisional
Probab=82.96 E-value=7.7 Score=30.61 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHH-HHHHHHHHhhcCC-ceEEEEcccccCcC-----C-----
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-LELASENAADLEL-DIDFVQCDIRNLEW-----R----- 111 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~-~~~a~~~~~~~~~-~v~~~~~d~~~~~~-----~----- 111 (212)
+++++|-.|++.| ++..++ +.+..+|+.++.++.. ++.+.+.++..+. ++.++..|+.+... .
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 5678898887554 444444 4444589999887664 5555444544433 68888888875432 0
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|+++.|....
T Consensus 86 g~id~li~~ag~~ 98 (253)
T PRK07904 86 GDVDVAIVAFGLL 98 (253)
T ss_pred CCCCEEEEeeecC
Confidence 1589888776543
No 352
>PRK07109 short chain dehydrogenase; Provisional
Probab=82.91 E-value=11 Score=31.25 Aligned_cols=76 Identities=25% Similarity=0.289 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCcChHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..+++++=.|++.| ++..+ ++.|. +|+.++.++..++...+.++..+.++.++..|+.+...-
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 35678888886544 44433 44455 899999998877777666665555778888898764321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|+++.|....
T Consensus 84 g~iD~lInnAg~~ 96 (334)
T PRK07109 84 GPIDTWVNNAMVT 96 (334)
T ss_pred CCCCEEEECCCcC
Confidence 1589999877543
No 353
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.78 E-value=9.3 Score=31.68 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
..++++|-.|+++|. +...+++.|. +|+.++.++..++...+.++..+.++.++..|+.+...- .
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456788888875543 2333444555 799999998888777777666665677788887653210 2
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|.-+.
T Consensus 84 ~iD~lVnnAG~~ 95 (330)
T PRK06139 84 RIDVWVNNVGVG 95 (330)
T ss_pred CCCEEEECCCcC
Confidence 579999887643
No 354
>PRK07791 short chain dehydrogenase; Provisional
Probab=82.71 E-value=23 Score=28.43 Aligned_cols=77 Identities=22% Similarity=0.211 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCCh---------HHHHHHHHHHhhcCCceEEEEcccccCcCC---
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRNLEWR--- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~---------~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~--- 111 (212)
.+++++|-.|++.|+ +...+++.|. +|+.++.+. ...+.+...+...+.++.++..|+.+...-
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 467889999977765 2333444555 788887754 444444444444344677788888763211
Q ss_pred --------CcccEEEEcCCCC
Q 028214 112 --------GHVDTVVMNPPFG 124 (212)
Q Consensus 112 --------~~~D~i~~nppy~ 124 (212)
...|.++.|.-+.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 2679999887653
No 355
>PRK07677 short chain dehydrogenase; Provisional
Probab=82.57 E-value=10 Score=29.58 Aligned_cols=73 Identities=27% Similarity=0.295 Sum_probs=46.3
Q ss_pred CCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Ccc
Q 028214 49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (212)
Q Consensus 49 ~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~ 114 (212)
+++++-.|++.|. +...+++.|. +|+.++.++...+.+.+.+...+.++.++..|+.+...- ...
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 3578878876553 2333344455 899999988766666555544333677888888653211 157
Q ss_pred cEEEEcCC
Q 028214 115 DTVVMNPP 122 (212)
Q Consensus 115 D~i~~npp 122 (212)
|.++.|..
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99997764
No 356
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.50 E-value=9.7 Score=29.54 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=45.5
Q ss_pred CEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccCcCC--------CcccE
Q 028214 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR--------GHVDT 116 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~v~~~~~d~~~~~~~--------~~~D~ 116 (212)
++++-.| |+|.++..++ +.|. +|++++.++...+...+..... +.++.+++.|+.+...- ..+|.
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 4677777 4455555444 3344 8999999887665544444332 22688899998875321 14799
Q ss_pred EEEcCCC
Q 028214 117 VVMNPPF 123 (212)
Q Consensus 117 i~~nppy 123 (212)
++.+..+
T Consensus 80 vv~~ag~ 86 (243)
T PRK07102 80 VLIAVGT 86 (243)
T ss_pred EEECCcC
Confidence 9987654
No 357
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=82.45 E-value=3.2 Score=33.34 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=23.1
Q ss_pred ceEEEEcccccCcCCC-cccEEEEcCCCCC
Q 028214 97 DIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 97 ~v~~~~~d~~~~~~~~-~~D~i~~nppy~~ 125 (212)
++++.++|+.+..... .-|+|++||||..
T Consensus 155 ~v~i~~~Df~~~i~~~~~~dfvYlDPPY~~ 184 (266)
T TIGR00571 155 NTTFLCGSFEKILAMVDDDSFVYCDPPYLP 184 (266)
T ss_pred CCEEEECCHHHHHhhcCCCCEEEECCCCCC
Confidence 5889999998876432 6679999999954
No 358
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.34 E-value=11 Score=29.64 Aligned_cols=74 Identities=27% Similarity=0.342 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcChHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccCcCC-------Cccc
Q 028214 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR-------GHVD 115 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~----~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~v~~~~~d~~~~~~~-------~~~D 115 (212)
.+++++=.|++.| ++.. +++.|. +|++++.++...+.+...+... +.++.++..|+.+...- .+.|
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 5678888886555 3333 344455 8999999887666655554432 33577888888653211 2689
Q ss_pred EEEEcCCC
Q 028214 116 TVVMNPPF 123 (212)
Q Consensus 116 ~i~~nppy 123 (212)
.++.|.-.
T Consensus 84 ~lv~~ag~ 91 (259)
T PRK06125 84 ILVNNAGA 91 (259)
T ss_pred EEEECCCC
Confidence 99988654
No 359
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.32 E-value=4.5 Score=33.79 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=44.6
Q ss_pred CCCCEEEEEcCCc-Ch-HHHHHHHcCCCeEEEEeCCh---------------------HHHHHHHHHHhhcCC--ceEEE
Q 028214 47 VSNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFV 101 (212)
Q Consensus 47 ~~~~~vlDlg~G~-G~-~~~~~~~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~v~~~ 101 (212)
.+..+|+=+|||. |. ++..+++.|..+++.+|-|. .-.+.+++.++..+. +++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3678999999983 43 45556667877899999863 122444455554432 56666
Q ss_pred EcccccCcCC---CcccEEEE
Q 028214 102 QCDIRNLEWR---GHVDTVVM 119 (212)
Q Consensus 102 ~~d~~~~~~~---~~~D~i~~ 119 (212)
..++...... ..+|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEE
Confidence 6665321111 26898885
No 360
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.70 E-value=14 Score=28.85 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
++++++=.|++.|. +...+++.|. +|+.++.++...+.+...+...+.++.++..|+.+...- ..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 56788877765543 2333344455 899999888777766666555444677888888764311 15
Q ss_pred ccEEEEcCCC
Q 028214 114 VDTVVMNPPF 123 (212)
Q Consensus 114 ~D~i~~nppy 123 (212)
.|.++.|...
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 7999988764
No 361
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.60 E-value=6.5 Score=35.60 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=41.8
Q ss_pred CEEEEEcCCcChHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---C--CcccEEEEcC
Q 028214 50 KVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---R--GHVDTVVMNP 121 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~--~~~D~i~~np 121 (212)
.+++=+ |.|.++..+++. ...+++.+|.|++.++.+++. ...++.||..+... . .+.|.+++--
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 345554 455555555432 234899999999999888652 46789999887531 1 1788877643
No 362
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=81.38 E-value=2.1 Score=33.40 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHh
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAA 92 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~-~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (212)
...-|+..+...+...++.+.+|..-|+|..+..+. ++...++++.|.||-+.+.|+....
T Consensus 27 HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 27 HVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 344456677777777899999999999999877777 4456689999999999988877663
No 363
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=81.04 E-value=7.1 Score=34.84 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhc-C-CceEEEEcccccCcCC-----C-ccc
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL-E-LDIDFVQCDIRNLEWR-----G-HVD 115 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~-~-~~v~~~~~d~~~~~~~-----~-~~D 115 (212)
.+++||--| |+|+++.++.++ ++++++-.|.|+..+....+.+... + .++.++.+|+.+...- . +.|
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 678888777 778888777754 6789999999999998888877663 2 2788999999886432 1 699
Q ss_pred EEEEcCCCCCC
Q 028214 116 TVVMNPPFGTR 126 (212)
Q Consensus 116 ~i~~nppy~~~ 126 (212)
+|+--..|-|.
T Consensus 328 ~VfHAAA~KHV 338 (588)
T COG1086 328 IVFHAAALKHV 338 (588)
T ss_pred eEEEhhhhccC
Confidence 99976666443
No 364
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.01 E-value=5.5 Score=33.33 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCCh---------------------HHHHHHHHHHhhcCC--ceEEEE
Q 028214 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ 102 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~v~~~~ 102 (212)
...+|+=+||| .|. ++..+++.|..+++.+|-|. .-.+.++++++..+. +++...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 66899999998 343 45556667888999999762 122344455554332 566666
Q ss_pred cccccCcC---CCcccEEEE
Q 028214 103 CDIRNLEW---RGHVDTVVM 119 (212)
Q Consensus 103 ~d~~~~~~---~~~~D~i~~ 119 (212)
.++..... -..+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIID 122 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEE
Confidence 55532111 126898885
No 365
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.00 E-value=9.5 Score=29.76 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=45.8
Q ss_pred CEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----CcccEEEEc
Q 028214 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----GHVDTVVMN 120 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----~~~D~i~~n 120 (212)
+++|-.|+ +|.++..++ +.| .+|++++-++...+.........+.++.++.+|+.+...- ...|.++.|
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 46777775 444444444 334 4899998887665555544444444678888888764211 168999987
Q ss_pred CCCC
Q 028214 121 PPFG 124 (212)
Q Consensus 121 ppy~ 124 (212)
.-+.
T Consensus 81 ag~~ 84 (257)
T PRK09291 81 AGIG 84 (257)
T ss_pred CCcC
Confidence 6543
No 366
>PRK08589 short chain dehydrogenase; Validated
Probab=80.47 E-value=14 Score=29.28 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.++.+ ...+...+.+...+.++.++..|+.+...- .
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 367788888876654 2333444454 89999988 444444444444444677888888764221 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|..+.
T Consensus 82 ~id~li~~Ag~~ 93 (272)
T PRK08589 82 RVDVLFNNAGVD 93 (272)
T ss_pred CcCEEEECCCCC
Confidence 579999887654
No 367
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.45 E-value=16 Score=31.40 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---C--CcccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---R--GHVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~--~~~D~i~~ 119 (212)
..++++=+|+ |.++..+++. ....|+.+|.+++.++.+++... .+.++.+|..+... . .++|.|++
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~----~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP----NTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC----CCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4577888777 5554444432 23489999999998877766432 46788998865421 1 27888887
Q ss_pred cCC
Q 028214 120 NPP 122 (212)
Q Consensus 120 npp 122 (212)
-.+
T Consensus 304 ~~~ 306 (453)
T PRK09496 304 LTN 306 (453)
T ss_pred CCC
Confidence 544
No 368
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.27 E-value=15 Score=28.63 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..++++|=.|+ +|.++..+++ .|. +|+.++.++...+.....++..+.++.++..|+.+...-
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46788998884 5665555554 355 899999988777666666655444677888888764321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|.++.+....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 1479999887654
No 369
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=79.54 E-value=17 Score=28.91 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
++++++-.|++.|. +...+++.|. +|+.++.++...+...+.+...+.++.+++.|+.+...- .+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56788888865543 2333334455 899999987766655555544444678889998764321 15
Q ss_pred ccEEEEcCCC
Q 028214 114 VDTVVMNPPF 123 (212)
Q Consensus 114 ~D~i~~nppy 123 (212)
.|+++.|...
T Consensus 88 id~li~~ag~ 97 (278)
T PRK08277 88 CDILINGAGG 97 (278)
T ss_pred CCEEEECCCC
Confidence 7999987653
No 370
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=79.45 E-value=25 Score=28.33 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccCcC---------
Q 028214 46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW--------- 110 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~--------- 110 (212)
.+.++++|--|.++|+ ....+++.|+ +|+..+.+++..+.+.+.+...+. ++..+..|+.+.+.
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 3578899999998886 4556666666 899999999888777776655443 57888899875432
Q ss_pred ---CCcccEEEEcCCCCC
Q 028214 111 ---RGHVDTVVMNPPFGT 125 (212)
Q Consensus 111 ---~~~~D~i~~nppy~~ 125 (212)
..+.|+++.|.-...
T Consensus 84 ~~~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALG 101 (270)
T ss_pred HHhCCCCCEEEEcCCcCC
Confidence 127899998776554
No 371
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.30 E-value=11 Score=33.71 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=41.1
Q ss_pred CEEEEEcCCcChHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---C--CcccEEEEc
Q 028214 50 KVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---R--GHVDTVVMN 120 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~--~~~D~i~~n 120 (212)
.+++=+|| |.++..+++. ...+++.+|.|++.++.+++. ....+.+|..+... . +++|.++..
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 34555555 5555555532 234799999999988888642 47889999887531 1 278877653
No 372
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=79.12 E-value=18 Score=28.05 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
+++++|-.|+ +|.++..++ +.+. +|+.++.++.....+...+...+.++.++..|+.+...- .
T Consensus 2 ~~~~ilItGa-s~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGG-GGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4677888885 455554444 3344 899999988776666555554444688889998764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.+....
T Consensus 80 ~~d~vi~~ag~~ 91 (250)
T TIGR03206 80 PVDVLVNNAGWD 91 (250)
T ss_pred CCCEEEECCCCC
Confidence 479998887653
No 373
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.11 E-value=8.1 Score=28.90 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCCh
Q 028214 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS 81 (212)
Q Consensus 51 ~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~~ 81 (212)
+|+-+||| .|. +...+++.|..+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 36778887 354 45555667877899998764
No 374
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.89 E-value=18 Score=28.34 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
..++++|=.|++.|. +...+++.|. +|+.++.+. ..+.+.+.....+.++.++..|+.+...- .
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999976654 2333444455 788888773 33334444433333677888888764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.++.+..+.
T Consensus 91 ~id~li~~ag~~ 102 (258)
T PRK06935 91 KIDILVNNAGTI 102 (258)
T ss_pred CCCEEEECCCCC
Confidence 579999887653
No 375
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.87 E-value=11 Score=33.85 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhc-----C----CceEEEEcccccCcCC-
Q 028214 46 DVSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL-----E----LDIDFVQCDIRNLEWR- 111 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~-----~----~~v~~~~~d~~~~~~~- 111 (212)
...++++|-.| |+|.++..+++ .|. +|++++.+....+.....+... + .++.++.+|+.+...-
T Consensus 77 ~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 77 TKDEDLAFVAG-ATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred cCCCCEEEEEC-CCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 34566777777 45666665553 344 8999998877665444333221 1 1478899999874321
Q ss_pred ---CcccEEEEcCCC
Q 028214 112 ---GHVDTVVMNPPF 123 (212)
Q Consensus 112 ---~~~D~i~~nppy 123 (212)
...|+||++...
T Consensus 155 ~aLggiDiVVn~AG~ 169 (576)
T PLN03209 155 PALGNASVVICCIGA 169 (576)
T ss_pred HHhcCCCEEEEcccc
Confidence 168999887543
No 376
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.86 E-value=6.1 Score=30.90 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=43.2
Q ss_pred CCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCC-------------------hHHHHHHHHHHhhcCC--ceEEEEcc
Q 028214 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID-------------------SDSLELASENAADLEL--DIDFVQCD 104 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~-------------------~~~~~~a~~~~~~~~~--~v~~~~~d 104 (212)
...+|+=+||| .|. ++..+++.|..+++.+|-| ..-.+.+.++++..+. +++.+..+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 56799999998 344 4666667788888888643 2223555555555433 55555555
Q ss_pred cccCcCC---CcccEEEE
Q 028214 105 IRNLEWR---GHVDTVVM 119 (212)
Q Consensus 105 ~~~~~~~---~~~D~i~~ 119 (212)
+...... ..+|+|+.
T Consensus 100 i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 100 LDAENAEELIAGYDLVLD 117 (228)
T ss_pred eCHHHHHHHHhCCCEEEE
Confidence 4221111 16898885
No 377
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.80 E-value=7 Score=30.29 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=25.4
Q ss_pred CCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCC
Q 028214 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~ 80 (212)
+..+|+=+||| .|. ++..+++.|..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 66789999998 354 4556667788889999987
No 378
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.51 E-value=20 Score=28.01 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|=.|+ +|.++..++ +.|. +|+.++.++...+.+.+.+...+.++.+++.|+.+...-
T Consensus 5 ~~~~~vlItGa-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 5 LNGKTAVVTGA-ASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35678887665 445444444 4455 799999998777666666655554677889998764421
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|+++.+.-+.
T Consensus 83 ~~~d~vi~~ag~~ 95 (262)
T PRK13394 83 GSVDILVSNAGIQ 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 1479998877553
No 379
>PRK08703 short chain dehydrogenase; Provisional
Probab=78.11 E-value=26 Score=26.98 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcC-CceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~~---------- 111 (212)
.++++++-.|| +|.++..++ +.|. +|+.++.++...+.....+...+ ..+.+...|+.+....
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 46788999995 444444444 3444 79999998876665555543322 1345566665432100
Q ss_pred ----CcccEEEEcCCC
Q 028214 112 ----GHVDTVVMNPPF 123 (212)
Q Consensus 112 ----~~~D~i~~nppy 123 (212)
...|.|+.+.-.
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 246888876653
No 380
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.99 E-value=6 Score=33.43 Aligned_cols=44 Identities=41% Similarity=0.638 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCc-ChHHHHHHHc-CCCeEEEEeCChHHHHHHHHH
Q 028214 47 VSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (212)
Q Consensus 47 ~~~~~vlDlg~G~-G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~~ 90 (212)
.++.+|+..|||. |..++.+++. +..++++++.++...+.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4678999999887 7777777755 444699999999988888775
No 381
>PRK06720 hypothetical protein; Provisional
Probab=77.80 E-value=26 Score=26.01 Aligned_cols=77 Identities=26% Similarity=0.282 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
+++.++-.|++.|. +...+++.|. +|+.+|.++...+.+.+.+...+..+.++..|+.+...- ..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56788888877654 3334445554 899999887766655455544343566778887653210 15
Q ss_pred ccEEEEcCCCCC
Q 028214 114 VDTVVMNPPFGT 125 (212)
Q Consensus 114 ~D~i~~nppy~~ 125 (212)
.|.++.|.....
T Consensus 94 iDilVnnAG~~~ 105 (169)
T PRK06720 94 IDMLFQNAGLYK 105 (169)
T ss_pred CCEEEECCCcCC
Confidence 899998866543
No 382
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=77.76 E-value=4.4 Score=27.15 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=32.6
Q ss_pred EcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-CcccEEEEcC
Q 028214 55 FGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMNP 121 (212)
Q Consensus 55 lg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~np 121 (212)
+.||+|..+..+++ .+++.++.++..+++.+.+..+.... ..+|+|++-|
T Consensus 4 ~~Cg~G~sTS~~~~-----------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P 54 (96)
T cd05564 4 LVCSAGMSTSILVK-----------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP 54 (96)
T ss_pred EEcCCCchHHHHHH-----------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh
Confidence 56788875444332 34555666666778888887766433 3799999966
No 383
>PRK09242 tropinone reductase; Provisional
Probab=77.74 E-value=20 Score=27.99 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccCcCC-----------
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~----------- 111 (212)
.++++|-.|++.|. +...+++.|. +|+.++.+++..+.....+... +.++.++..|+.+...-
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57889988875543 2333334455 8999998887776665555443 33677888888764210
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|.++.+..+.
T Consensus 87 g~id~li~~ag~~ 99 (257)
T PRK09242 87 DGLHILVNNAGGN 99 (257)
T ss_pred CCCCEEEECCCCC
Confidence 1689999887653
No 384
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.67 E-value=21 Score=28.09 Aligned_cols=75 Identities=25% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|=.|+ +|.++..++ +.|. +|+.++.++...+...+.+...+.++.++..|+.+...-
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35778888885 455544444 4455 899999988776665555544344677888888765421
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
.+.|.|+.+.-+
T Consensus 86 ~~id~vi~~Ag~ 97 (263)
T PRK07814 86 GRLDIVVNNVGG 97 (263)
T ss_pred CCCCEEEECCCC
Confidence 157999887654
No 385
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=77.64 E-value=20 Score=27.99 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
.++++|-.|+++|. +...++..|. +++.++.+....+.+...+...+.++.++..|+.+...- ..
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57899999966554 2333344455 788888877766655554444344577788888765321 15
Q ss_pred ccEEEEcCCC
Q 028214 114 VDTVVMNPPF 123 (212)
Q Consensus 114 ~D~i~~nppy 123 (212)
+|.++.+..+
T Consensus 89 ~d~li~~ag~ 98 (255)
T PRK06113 89 VDILVNNAGG 98 (255)
T ss_pred CCEEEECCCC
Confidence 7999987765
No 386
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.61 E-value=24 Score=27.28 Aligned_cols=75 Identities=20% Similarity=0.110 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.++++++=.|+ +|.++..+++ .|. +|++++.++...+...+.++..+.++.++..|+.+...-
T Consensus 5 ~~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 5 LAGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35678887775 5555555543 344 788999887766655555544444688899998764321
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
...|.++.+.-.
T Consensus 83 ~~id~vi~~ag~ 94 (250)
T PRK12939 83 GGLDGLVNNAGI 94 (250)
T ss_pred CCCCEEEECCCC
Confidence 157998877544
No 387
>PRK07062 short chain dehydrogenase; Provisional
Probab=77.60 E-value=19 Score=28.26 Aligned_cols=77 Identities=22% Similarity=0.211 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~---------- 111 (212)
.++++++-.|++.|. +...+++.|. +|+.++.++...+.+.+.+... +.++.++..|+.+...-
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467889999976654 3333444455 7999999887766655544332 22567788888765321
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
...|.++.|..+.
T Consensus 85 ~g~id~li~~Ag~~ 98 (265)
T PRK07062 85 FGGVDMLVNNAGQG 98 (265)
T ss_pred cCCCCEEEECCCCC
Confidence 1579999887543
No 388
>PRK06949 short chain dehydrogenase; Provisional
Probab=77.52 E-value=21 Score=27.78 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..+++++-.| |+|.++..++ +.|. +|++++.+++.++.....++..+.++.++..|+.+...-
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4678888888 4555544444 3344 799999998877666655544333677888887653211
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
...|+++.+...
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 147999987664
No 389
>PRK06196 oxidoreductase; Provisional
Probab=77.50 E-value=26 Score=28.54 Aligned_cols=72 Identities=25% Similarity=0.236 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..+++++=.|++ |.++..++ +.|. +|++++.++...+.+...+. .+.++..|+.+...-
T Consensus 24 l~~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 24 LSGKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 367788888865 44555444 3454 89999988776554443332 367788888765321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|+++.|..+.
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 2589999887653
No 390
>PRK05872 short chain dehydrogenase; Provisional
Probab=77.39 E-value=19 Score=29.15 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.++.++..++...+.+.. +..+..+..|+.+...- .
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467889988865543 2333334455 899999988776655444432 22455566777654211 2
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|.-..
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 589999887654
No 391
>PRK08643 acetoin reductase; Validated
Probab=77.37 E-value=20 Score=27.93 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cc
Q 028214 49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 113 (212)
+++++=.|+. |.++..++ +.|. +|+.++.++...+.+...+...+.++.++..|+.+...- ..
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3567777754 44444444 3454 899999988777666665554444677888998765321 15
Q ss_pred ccEEEEcCCCC
Q 028214 114 VDTVVMNPPFG 124 (212)
Q Consensus 114 ~D~i~~nppy~ 124 (212)
.|.++.+..+.
T Consensus 80 id~vi~~ag~~ 90 (256)
T PRK08643 80 LNVVVNNAGVA 90 (256)
T ss_pred CCEEEECCCCC
Confidence 79999887553
No 392
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.15 E-value=23 Score=27.50 Aligned_cols=75 Identities=25% Similarity=0.272 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
+++++|=.| |+|.++..+++. |. +|++++.++...+.....+...+.++.++..|+.+...- .
T Consensus 3 ~~~~vlItG-~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTG-AASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456777666 566666666643 44 899999988777666555555455788888998754321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+|+.+..+.
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 479999876543
No 393
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.99 E-value=9.9 Score=30.72 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC-CCcccEEEEcCC
Q 028214 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RGHVDTVVMNPP 122 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~i~~npp 122 (212)
.+++...|+|+..|.-+-.+.+++- .|+++|--+-+ +++-..| .++-...|..++.+ ....|..+||..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma-----~sL~dtg-~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMA-----QSLMDTG-QVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhh-----hhhhccc-ceeeeeccCcccccCCCCCceEEeehh
Confidence 3678999999999999999998744 89999976522 2222222 68888899888877 348999999976
No 394
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.83 E-value=24 Score=27.17 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++-.|+ +|.++..++ +.|. +|++++-++.........+...+.++.++.+|+.+...- .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5678887775 565555544 3444 899999887666555555544444688889998764210 1
Q ss_pred cccEEEEcCCCCC
Q 028214 113 HVDTVVMNPPFGT 125 (212)
Q Consensus 113 ~~D~i~~nppy~~ 125 (212)
.+|.|+.+.....
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 5799988876543
No 395
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.80 E-value=7.6 Score=34.39 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCcCh-HHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 028214 47 VSNKVVADFGCGCGT-LGAAATLL-GADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~-~~~~~~~~-~~~~v~~~D~~~~~~~~a~~ 89 (212)
.++++|+-+|||.=. .++..++. |+ .|+++|.+++..+.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 478999999999654 55556644 66 89999999999888876
No 396
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.42 E-value=23 Score=27.29 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
..++++-.|+ +|.++..+++ .|. +|+.++.++...+...+.++..+.++.++.+|+.+...- .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3467888884 5555555553 455 899999987766555554444333678889998765421 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.++.+.-+.
T Consensus 83 ~id~lv~~ag~~ 94 (241)
T PRK07454 83 CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEECCCcc
Confidence 479999877654
No 397
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.20 E-value=24 Score=27.24 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
+++++|=.|++ |.++..++ +.|. +|++++-++...+.....+.. +.++.++.+|+.+...- .
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 56788888754 44444433 4455 799999998766655555443 33678889998765422 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
.+|.|+.+..+
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 57999988765
No 398
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.14 E-value=10 Score=31.77 Aligned_cols=45 Identities=36% Similarity=0.497 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCc-ChHHHHHHH-cCCCeEEEEeCChHHHHHHHHH
Q 028214 46 DVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN 90 (212)
Q Consensus 46 ~~~~~~vlDlg~G~-G~~~~~~~~-~~~~~v~~~D~~~~~~~~a~~~ 90 (212)
..+++++.-+|||. |.-.+.-++ .++.+++++|+++.-++.|++-
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 34677888888874 444444443 3678999999999999988765
No 399
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.07 E-value=41 Score=27.43 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~---------- 111 (212)
..++.|+--||-+|+ ++.++++.|. +++-+-...+.++...+.++..+. ++.+++.|+.+...-
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 378899999999996 5666777766 555555555555555444443332 488999999876432
Q ss_pred -CcccEEEEcCCCCCC
Q 028214 112 -GHVDTVVMNPPFGTR 126 (212)
Q Consensus 112 -~~~D~i~~nppy~~~ 126 (212)
...|+.+.|--+...
T Consensus 89 fg~vDvLVNNAG~~~~ 104 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLV 104 (282)
T ss_pred cCCCCEEEecCccccc
Confidence 178999999877653
No 400
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.91 E-value=10 Score=30.49 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCcChHHHHHHHcC------CCeEEEEeCCh
Q 028214 48 SNKVVADFGCGCGTLGAAATLLG------ADQVIAIDIDS 81 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~~------~~~v~~~D~~~ 81 (212)
++..++|+|||.|.++..++..- ...++.+|-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 56799999999999999998652 34788888753
No 401
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.80 E-value=9.6 Score=32.82 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcCh-HHHHHHH-cCCCeEEEEeCChHHHHHHHH
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGT-LGAAATL-LGADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~-~~~~~~~-~~~~~v~~~D~~~~~~~~a~~ 89 (212)
|-++.+....++..... ...+++|+-+|+|.=. .....++ .|. +|+.+|.++...+.|+.
T Consensus 182 ~g~g~s~~~~i~r~t~~---~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 182 YGCRESLIDGIKRATDV---MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred chhchhhHHHHHHhcCC---CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 55666666555544422 3578999999999643 3333333 355 89999999887776654
No 402
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.78 E-value=26 Score=27.67 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|-.|+ +|.++..++ ..|. +|+.++.+++..+.....+...+.++.++..|+.+...-
T Consensus 7 ~~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 7 FAGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36778888885 555544444 3344 799999987766555444444333567788888653311
Q ss_pred CcccEEEEcCC
Q 028214 112 GHVDTVVMNPP 122 (212)
Q Consensus 112 ~~~D~i~~npp 122 (212)
...|.++.|..
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 14799998763
No 403
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.65 E-value=5.1 Score=34.99 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=45.0
Q ss_pred CCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCChHH-------------------HHHHHHHHhhcC--CceEEEEcc
Q 028214 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDSDS-------------------LELASENAADLE--LDIDFVQCD 104 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~~~~-------------------~~~a~~~~~~~~--~~v~~~~~d 104 (212)
.+.+||-+||| .|. +.--++..|...+..+|+|.== ...|.+.++... .++.++++|
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 57799999986 343 4444555577788888865210 122333333333 268889999
Q ss_pred cccCcCCC----cccEEEE
Q 028214 105 IRNLEWRG----HVDTVVM 119 (212)
Q Consensus 105 ~~~~~~~~----~~D~i~~ 119 (212)
+.+....- +||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 98874432 6888874
No 404
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.59 E-value=24 Score=27.49 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.++++|=.|++.| ++..++ +.|. +|+.++.++...+.....++..+.++.++..|+.+...- .
T Consensus 8 ~~k~~lItGas~g-iG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQG-IGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 5778888885544 444444 4454 899999887766665555544443567788887754311 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
.+|.++.+...
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 58999988765
No 405
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=75.30 E-value=5.1 Score=33.11 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=35.7
Q ss_pred cccEEEEcCCCCCCCCCchHHHHHHHHhhcCceEE-EEecCchHHHHHHHHH--hhcCCcceeEEEEEeecCCccccc
Q 028214 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVY-SLHKTSTREHVKKAAL--RDFNASSAEVLCELRYDVPQLYKF 187 (212)
Q Consensus 113 ~~D~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--r~l~~~~~~~~~~~~~~~~~~~~~ 187 (212)
+.|+|++||||. .-.+++..+....+..+. .-.+..+-.++...+. +.|. +...-..+.|.+|..+..
T Consensus 135 eADIVVTNPPFS-----LFrEyv~~Li~~~KkFlIIGN~NaiTYkeiFplik~nk~Wl--G~~~~g~~~F~vP~~~~~ 205 (336)
T PF13651_consen 135 EADIVVTNPPFS-----LFREYVAQLIEYDKKFLIIGNINAITYKEIFPLIKENKIWL--GYTFRGDMWFRVPDDYEL 205 (336)
T ss_pred cCCEEEeCCCcH-----HHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhcCcEEe--ccccCCceeeecCCCCcc
Confidence 899999999986 334666666666553322 2234445444444332 2222 111112344666766533
No 406
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=75.28 E-value=23 Score=34.34 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCc-ChH-HHHHHHcCCC-------------eEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC---c
Q 028214 48 SNKVVADFGCGC-GTL-GAAATLLGAD-------------QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL---E 109 (212)
Q Consensus 48 ~~~~vlDlg~G~-G~~-~~~~~~~~~~-------------~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~---~ 109 (212)
+.++|+-+|||. |.. ...+++.+.. .|+..|.++...+.+.+... +++.++.|+.+. .
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~----~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE----NAEAVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC----CCceEEeecCCHHHHH
Confidence 356899999973 543 3333343222 37888998766655544332 344555554442 2
Q ss_pred CC-CcccEEEEcCCC
Q 028214 110 WR-GHVDTVVMNPPF 123 (212)
Q Consensus 110 ~~-~~~D~i~~nppy 123 (212)
.. ...|+|++-.|+
T Consensus 644 ~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 644 KYVSQVDVVISLLPA 658 (1042)
T ss_pred HhhcCCCEEEECCCc
Confidence 21 259998877665
No 407
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.16 E-value=25 Score=27.30 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~---------- 111 (212)
.++++++=.|+ +|.++..++ +.|. +|++++.++...+...+.+...+. ++.++..|+......
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 36788998885 555554444 3344 899999988766655555544332 566677776532110
Q ss_pred ---CcccEEEEcCC
Q 028214 112 ---GHVDTVVMNPP 122 (212)
Q Consensus 112 ---~~~D~i~~npp 122 (212)
.+.|.|+.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 15799987753
No 408
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.03 E-value=42 Score=27.01 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHh-hc-CCceEEEEcccccCcCC--C--ccc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAA-DL-ELDIDFVQCDIRNLEWR--G--HVD 115 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~----~-~~~v~~~D~~~~~~~~a~~~~~-~~-~~~v~~~~~d~~~~~~~--~--~~D 115 (212)
..+..++|+|+|+..-+..+... + ..+.+.+|++...++...+.+. .. ++.+.-+++|....... . +==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 35789999999998765555432 2 3588999999988866544443 32 23666778886543221 1 111
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHhhcCceEEEEe
Q 028214 116 TVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (212)
Q Consensus 116 ~i~~nppy~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (212)
+++......-..++.-.-|+.........+=|+++
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 33333333333445555566655555443334333
No 409
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.80 E-value=6.1 Score=30.32 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=41.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCc
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (212)
.++..|++.|.--|..++..|.. | ..+|+++|+|-....-+..... .+.+++++..+..
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p----~i~f~egss~dpa 131 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP----DILFIEGSSTDPA 131 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC----CeEEEeCCCCCHH
Confidence 47889999999999887777753 3 3589999998544433322211 6899999987653
No 410
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.72 E-value=25 Score=28.60 Aligned_cols=77 Identities=23% Similarity=0.192 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCC-hHHHHHHHHHHhhcCCceEEEEcccccCcCC----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEWR----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.+|.+ ....+.....+...+.++.++..|+.+...- .
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 467889988877664 3444455555 78888874 3334444444444444677888888763211 2
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|.-+.
T Consensus 89 ~iD~li~nAG~~ 100 (306)
T PRK07792 89 GLDIVVNNAGIT 100 (306)
T ss_pred CCCEEEECCCCC
Confidence 579999876553
No 411
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=74.55 E-value=6.9 Score=31.47 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHH
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~ 86 (212)
|+.+..-....+..... . ...+.+|++||.|.+...+. ...++..|+|+..+..
T Consensus 7 y~GgK~~l~~~i~~~~p---~-~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 7 WAGGKTSLLPEIKKHLP---K-NFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLINL 60 (266)
T ss_pred cCccHHHHHHHHHHhcC---c-ccCEEEEecCCcchhheeec---CcEEEEecCCHHHHHH
Confidence 55554444443333332 1 22589999999999988553 2368889999988743
No 412
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.55 E-value=28 Score=26.71 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
++++++-.|++ |.++..++ +.|. +|++++-++...+.+.+.....+ ++.++..|+.+...- .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 56789999975 44444333 3345 89999998876665544443332 577888888764311 1
Q ss_pred cccEEEEcCC
Q 028214 113 HVDTVVMNPP 122 (212)
Q Consensus 113 ~~D~i~~npp 122 (212)
..|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 3688887664
No 413
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.41 E-value=9.3 Score=32.36 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCC
Q 028214 47 VSNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (212)
Q Consensus 47 ~~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~ 80 (212)
..+.+|+=+||| .|. ++..+++.|..+++.+|-|
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467789999998 454 4556667788889999987
No 414
>PRK08328 hypothetical protein; Provisional
Probab=74.34 E-value=12 Score=29.31 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCC
Q 028214 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~ 80 (212)
.+.+|+=+||| .|. ++..+++.|..+++.+|-|
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56789999998 354 4566667788889998854
No 415
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.27 E-value=20 Score=30.93 Aligned_cols=73 Identities=32% Similarity=0.339 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCcChH--HHHHHHcCCCeEEEEeCCh-HHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTL--GAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~--~~~~~~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~ 124 (212)
.+++++=+|+|.... +..++..|. .|+++|.+. ..++.....+... .++++.+|..+.. ...+|+|+.++-..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~-~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGEL--GIELVLGEYPEEF-LEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc--CCEEEeCCcchhH-hhcCCEEEECCCCC
Confidence 568899998877433 222334455 899999975 3333322333433 3567777765522 12699999877653
No 416
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=73.88 E-value=17 Score=29.74 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=39.7
Q ss_pred EEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEccccc
Q 028214 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCDIRN 107 (212)
Q Consensus 51 ~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (212)
+||-+||| .|. +...++..|..+++.+|.|. .-.+.|.+++..... +++.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 36667766 333 34444455777888888541 112444445544332 67777777765
Q ss_pred CcCC--CcccEEEE
Q 028214 108 LEWR--GHVDTVVM 119 (212)
Q Consensus 108 ~~~~--~~~D~i~~ 119 (212)
.... .+||+|+.
T Consensus 81 ~~~~f~~~fdvVi~ 94 (291)
T cd01488 81 KDEEFYRQFNIIIC 94 (291)
T ss_pred hhHHHhcCCCEEEE
Confidence 4322 28999997
No 417
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=73.68 E-value=42 Score=27.12 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccCcCC---------C-
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR---------G- 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~v~~~~~d~~~~~~~---------~- 112 (212)
..+++++--|+-+|+ ++..++++|. +++.+--+++.++...+.++.. ++.+.++..|+.+...- .
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 456788888877775 4555666655 8999999988888777777654 45788999998775432 1
Q ss_pred -cccEEEEcCCCCCC
Q 028214 113 -HVDTVVMNPPFGTR 126 (212)
Q Consensus 113 -~~D~i~~nppy~~~ 126 (212)
..|+++-|--|...
T Consensus 83 ~~IdvLVNNAG~g~~ 97 (265)
T COG0300 83 GPIDVLVNNAGFGTF 97 (265)
T ss_pred CcccEEEECCCcCCc
Confidence 68999999888776
No 418
>PRK09072 short chain dehydrogenase; Provisional
Probab=73.60 E-value=30 Score=27.12 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----------Ccc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------GHV 114 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------~~~ 114 (212)
+++++|=.|++.|. +...+++.|. +|++++.++...+.....+. .+.++.++..|+.+...- ...
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 46678888865543 2333444455 79999998877665554442 233677888888764321 147
Q ss_pred cEEEEcCCCC
Q 028214 115 DTVVMNPPFG 124 (212)
Q Consensus 115 D~i~~nppy~ 124 (212)
|.++.+..+.
T Consensus 82 d~lv~~ag~~ 91 (263)
T PRK09072 82 NVLINNAGVN 91 (263)
T ss_pred CEEEECCCCC
Confidence 9999886654
No 419
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.50 E-value=21 Score=28.11 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCCEEEEEcCCcC-hHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCG-TLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G-~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------- 111 (212)
.+++++|-.|+++| .++..++ +.|. +|+.++.++...+.+++..+..+ .+.++..|+.+...-
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHHH
Confidence 36789999998763 5555444 4454 78888887654333333222222 234677787654211
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
...|+++.|.-+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 1579999887553
No 420
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.38 E-value=12 Score=31.07 Aligned_cols=44 Identities=36% Similarity=0.446 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCcChH-HHHHHH-cCCCeEEEEeCChHHHHHHHHH
Q 028214 47 VSNKVVADFGCGCGTL-GAAATL-LGADQVIAIDIDSDSLELASEN 90 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~-~~~~~~-~~~~~v~~~D~~~~~~~~a~~~ 90 (212)
.++.++.-.|+|.=.+ .+.-++ +|+.+++|+|+|++-.+.|++-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4677777777765333 333333 3788999999999999888764
No 421
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=73.33 E-value=11 Score=32.76 Aligned_cols=75 Identities=23% Similarity=0.145 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCcChH--HHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTL--GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~--~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~ 125 (212)
.+++|+-+|-|--.. ...+.+.| ..|+..|.++.......+..... ++++..+.... .....+|+|+.+|-...
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~--~i~~~~g~~~~-~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLE--GIEVELGSHDD-EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCccchhhhhhhcc--CceeecCccch-hccccCCEEEECCCCCC
Confidence 478899999884443 33344545 59999998877722222211111 56677666555 22237999999996544
Q ss_pred C
Q 028214 126 R 126 (212)
Q Consensus 126 ~ 126 (212)
.
T Consensus 82 ~ 82 (448)
T COG0771 82 T 82 (448)
T ss_pred C
Confidence 3
No 422
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.93 E-value=25 Score=27.49 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|-.|+++|+ +...+++.|. +|+.++.++. +.+.+..+..+.++.++..|+.+...- .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 367889988876664 2333444455 7888776532 223333333344677888888764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
+.|+++.|.-..
T Consensus 83 ~iD~lv~~ag~~ 94 (251)
T PRK12481 83 HIDILINNAGII 94 (251)
T ss_pred CCCEEEECCCcC
Confidence 589999887653
No 423
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.78 E-value=16 Score=33.28 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCEEEEEcCCcCh--HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC---CC--cccEEEEc
Q 028214 49 NKVVADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RG--HVDTVVMN 120 (212)
Q Consensus 49 ~~~vlDlg~G~G~--~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~~--~~D~i~~n 120 (212)
..+++=+|||.=. ++..+.+.+. +++.+|.|++.++.+++. ...++.||..+... .. +.|++++-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 3567777766432 2222333334 799999999999888653 36789999887631 12 78877753
No 424
>PRK05650 short chain dehydrogenase; Provisional
Probab=72.40 E-value=30 Score=27.33 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=45.7
Q ss_pred EEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cccc
Q 028214 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHVD 115 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~D 115 (212)
+++-.|+ +|.++..++ +.|. +|+.++.++...+.+...+...+.++.++..|+.+...- ..+|
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5676675 444444443 4444 799999887766665555554444677888888764321 1589
Q ss_pred EEEEcCCCC
Q 028214 116 TVVMNPPFG 124 (212)
Q Consensus 116 ~i~~nppy~ 124 (212)
.++.|....
T Consensus 80 ~lI~~ag~~ 88 (270)
T PRK05650 80 VIVNNAGVA 88 (270)
T ss_pred EEEECCCCC
Confidence 999886654
No 425
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.31 E-value=11 Score=28.71 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=9.5
Q ss_pred ccEEEEcCCCCCCCC
Q 028214 114 VDTVVMNPPFGTRKK 128 (212)
Q Consensus 114 ~D~i~~nppy~~~~~ 128 (212)
.|+|++||||.....
T Consensus 1 VdliitDPPY~~~~~ 15 (231)
T PF01555_consen 1 VDLIITDPPYNIGKD 15 (231)
T ss_dssp EEEEEE---TSSSCS
T ss_pred CCEEEECCCCCCCCC
Confidence 489999999987644
No 426
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=72.00 E-value=16 Score=29.61 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEcccccCcCC----CcccEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWR----GHVDTV 117 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~----~~~D~i 117 (212)
.+++||-.| |+|.++..+++. |. +|++++.++.............+ .+++++.+|+.+...- ..+|.|
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 356788777 578877777654 44 78888776543222222111111 2678999998875321 157888
Q ss_pred EEcCC
Q 028214 118 VMNPP 122 (212)
Q Consensus 118 ~~npp 122 (212)
+-...
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 76543
No 427
>PLN02780 ketoreductase/ oxidoreductase
Probab=71.97 E-value=23 Score=29.21 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEccccc
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRN 107 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~ 107 (212)
.+++++-.|+++|. ++..+++.|. +|+.++.+++.++...+.++.. +.++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 46788988876664 4444555565 7999999988887766665442 1255666777653
No 428
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.64 E-value=18 Score=29.94 Aligned_cols=45 Identities=40% Similarity=0.522 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEcCC-cChHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 028214 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 45 ~~~~~~~vlDlg~G-~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~ 89 (212)
...++++|+-.||| .|..++.+++. |..+|+++|.+++..+.+++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 33467888888864 22344445543 55579999999988888865
No 429
>PLN02427 UDP-apiose/xylose synthase
Probab=71.60 E-value=13 Score=31.38 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHh-hcCCceEEEEcccccCcCC----CcccEE
Q 028214 47 VSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNLEWR----GHVDTV 117 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~-~~~~~v~~~~~d~~~~~~~----~~~D~i 117 (212)
.+.++||-.| |+|.++..+++. +..+|+++|.+............ ....+++++.+|+.+...- ..+|+|
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 3556788666 889888877753 33489999976543322211100 0111588999998764321 157887
Q ss_pred E
Q 028214 118 V 118 (212)
Q Consensus 118 ~ 118 (212)
+
T Consensus 91 i 91 (386)
T PLN02427 91 I 91 (386)
T ss_pred E
Confidence 7
No 430
>PRK06138 short chain dehydrogenase; Provisional
Probab=71.44 E-value=35 Score=26.38 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
++++++=.||. |.++..++ +.| .+|+.++-++...+....... .+.++.++..|+.+...- .
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56788888865 44444433 444 489999988766655544443 233678889998764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.|+.+..+.
T Consensus 81 ~id~vi~~ag~~ 92 (252)
T PRK06138 81 RLDVLVNNAGFG 92 (252)
T ss_pred CCCEEEECCCCC
Confidence 589998877654
No 431
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=71.41 E-value=26 Score=27.46 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=45.3
Q ss_pred EEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC-----------CCcccE
Q 028214 51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RGHVDT 116 (212)
Q Consensus 51 ~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-----------~~~~D~ 116 (212)
++|-.|++.|. +...+++.|. +|+.++.++..++.+...+...+ ++.++..|+.+... ....|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 56777766543 2333344455 79999999877766665554433 57778888765321 026899
Q ss_pred EEEcCCC
Q 028214 117 VVMNPPF 123 (212)
Q Consensus 117 i~~nppy 123 (212)
++.|.-.
T Consensus 80 li~naG~ 86 (259)
T PRK08340 80 LVWNAGN 86 (259)
T ss_pred EEECCCC
Confidence 9987654
No 432
>PRK07326 short chain dehydrogenase; Provisional
Probab=71.23 E-value=32 Score=26.33 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++-.| |+|.++..+++ .+. +|++++.++.......+.+... ..+.++.+|+.+...- .
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457888888 46666555553 344 7999999887665554444322 2577888887654210 1
Q ss_pred cccEEEEcCC
Q 028214 113 HVDTVVMNPP 122 (212)
Q Consensus 113 ~~D~i~~npp 122 (212)
..|.|+.+.-
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 5788886653
No 433
>PRK07024 short chain dehydrogenase; Provisional
Probab=71.13 E-value=25 Score=27.55 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=44.8
Q ss_pred CEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Ccc
Q 028214 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~ 114 (212)
++++=.|+ +|.++..++ +.|. +|+.++.+++.++...+.+...+ ++.++..|+.+...- ...
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 46777775 444444444 4455 89999998877665544443333 678888998764311 147
Q ss_pred cEEEEcCCC
Q 028214 115 DTVVMNPPF 123 (212)
Q Consensus 115 D~i~~nppy 123 (212)
|+++.|.-.
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999987654
No 434
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=71.10 E-value=6.3 Score=32.23 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=42.9
Q ss_pred cCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhc----CC--ceEEEEcccccCcC-----C-CcccEEEE
Q 028214 56 GCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL----EL--DIDFVQCDIRNLEW-----R-GHVDTVVM 119 (212)
Q Consensus 56 g~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~----~~--~v~~~~~d~~~~~~-----~-~~~D~i~~ 119 (212)
-.|+|+++.++.++ ++.+++.+|.|+..+-..++.+... ++ .+.++.+|+.+... . ..+|+|+-
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 45889999888865 4678999999999998888777422 12 23456889876532 1 27999997
Q ss_pred cCCCCCC
Q 028214 120 NPPFGTR 126 (212)
Q Consensus 120 nppy~~~ 126 (212)
-..|-|.
T Consensus 84 aAA~KhV 90 (293)
T PF02719_consen 84 AAALKHV 90 (293)
T ss_dssp ------H
T ss_pred ChhcCCC
Confidence 6666443
No 435
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=70.88 E-value=36 Score=25.37 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=22.4
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHhh---cCceEEEEecC-chHHHHH
Q 028214 116 TVVMNPPFGTRKKGVDMDFLSMALKV---ASQAVYSLHKT-STREHVK 159 (212)
Q Consensus 116 ~i~~nppy~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~-~~~~~~~ 159 (212)
.|++||||... ..|++++... .+..+.+++.. .+-.+..
T Consensus 64 ~vf~NPPYS~~-----~~~v~kaae~~~~~g~~~VmLlpa~tst~W~~ 106 (166)
T TIGR01712 64 AVWLNPPYSRP-----DIFVNKTAWFTEARQAAEVILIEADLSTVWWP 106 (166)
T ss_pred eEEecCCCCcH-----HHHHHHHHHHHHhhCCeEEEEEecCCcchhHH
Confidence 79999999643 6787776432 22334444433 3344443
No 436
>PRK06197 short chain dehydrogenase; Provisional
Probab=70.79 E-value=37 Score=27.44 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccCcCC---------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR--------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~--------- 111 (212)
..+++++=.|+. |.++..++ +.|. +|+.++.++...+.+.+.+... +.++.++..|+.+...-
T Consensus 14 ~~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 14 QSGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 467788877754 44444444 4455 7888888876665554444322 22678888998765321
Q ss_pred --CcccEEEEcCCC
Q 028214 112 --GHVDTVVMNPPF 123 (212)
Q Consensus 112 --~~~D~i~~nppy 123 (212)
...|+++.|...
T Consensus 92 ~~~~iD~li~nAg~ 105 (306)
T PRK06197 92 AYPRIDLLINNAGV 105 (306)
T ss_pred hCCCCCEEEECCcc
Confidence 158999987754
No 437
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.78 E-value=11 Score=28.56 Aligned_cols=38 Identities=39% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEcCCc-Ch-HHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 028214 51 VVADFGCGC-GT-LGAAATLLGADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 51 ~vlDlg~G~-G~-~~~~~~~~~~~~v~~~D~~~~~~~~a~~ 89 (212)
+|.-+|.|- |. .+..++..|. +|+|+|+|++.++...+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh
Confidence 444555542 21 2334445455 99999999987766543
No 438
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.72 E-value=45 Score=25.63 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++-.|+ +|.++..+++ .|. +|+.++.++...+.....+...+.++.++..|+.+...- .
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4577888884 6666665543 355 899999887665554444444444678888888664321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.++.+....
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 579999876543
No 439
>PRK06181 short chain dehydrogenase; Provisional
Probab=70.65 E-value=35 Score=26.71 Aligned_cols=72 Identities=26% Similarity=0.275 Sum_probs=45.8
Q ss_pred CEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Ccc
Q 028214 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~ 114 (212)
+++|-.| |+|.++..++ ..+. +|++++.++...+.+.+.+...+.++.++..|+.+...- ...
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4677666 4555555544 3344 899999987766655555554444677888888764321 157
Q ss_pred cEEEEcCCC
Q 028214 115 DTVVMNPPF 123 (212)
Q Consensus 115 D~i~~nppy 123 (212)
|.|+.+.-.
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999877543
No 440
>PRK06701 short chain dehydrogenase; Provisional
Probab=70.42 E-value=35 Score=27.49 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=45.9
Q ss_pred CCCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCCh-HHHHHHHHHHhhcCCceEEEEcccccCcCC----------
Q 028214 46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 46 ~~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------- 111 (212)
..+++++|-.|++.|. ++..+++.|. +|+.++.++ ...+.....++..+.++.++..|+.+...-
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467889988865553 3333444454 788887764 233333334444444677888888764321
Q ss_pred -CcccEEEEcCCC
Q 028214 112 -GHVDTVVMNPPF 123 (212)
Q Consensus 112 -~~~D~i~~nppy 123 (212)
...|+++.+...
T Consensus 122 ~~~iD~lI~~Ag~ 134 (290)
T PRK06701 122 LGRLDILVNNAAF 134 (290)
T ss_pred cCCCCEEEECCcc
Confidence 157999977654
No 441
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=70.36 E-value=32 Score=28.08 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++-.|+. |.++..++ +.|. +|+.++.++...+.+.+.+...+.++.++..|+.+...- .
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 46778888865 44444444 4454 899999887666555444432223677888888764321 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
..|+++.|...
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 48999988754
No 442
>PRK07831 short chain dehydrogenase; Provisional
Probab=70.14 E-value=44 Score=26.17 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=48.4
Q ss_pred CCCEEEEEcCC-cCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-cC-CceEEEEcccccCcCC----------
Q 028214 48 SNKVVADFGCG-CGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LE-LDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~-~~v~~~~~d~~~~~~~---------- 111 (212)
++++++=.|++ +|. +...++..|. +|+.+|.++..++.+.+.++. .+ .++.+++.|+.+...-
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888863 343 3333444555 799999888777666655543 23 2577888888754211
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
...|+++.|.-+.
T Consensus 95 ~g~id~li~~ag~~ 108 (262)
T PRK07831 95 LGRLDVLVNNAGLG 108 (262)
T ss_pred cCCCCEEEECCCCC
Confidence 1579999887653
No 443
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=70.06 E-value=3.5 Score=35.07 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.2
Q ss_pred CCEEEEEcCCcChHHHHHH
Q 028214 49 NKVVADFGCGCGTLGAAAT 67 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~ 67 (212)
.-+|+|+|||+|..++.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999997765553
No 444
>PRK08267 short chain dehydrogenase; Provisional
Probab=69.72 E-value=29 Score=27.14 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=45.8
Q ss_pred CEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC------------CCc
Q 028214 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW------------RGH 113 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~------------~~~ 113 (212)
+++|-.|++ |.++..++ +.|. +|+.++.++..++.+..... +.++.+++.|+.+... ..+
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 357777755 44444444 4454 89999998877666555443 2367888888876431 115
Q ss_pred ccEEEEcCCCCC
Q 028214 114 VDTVVMNPPFGT 125 (212)
Q Consensus 114 ~D~i~~nppy~~ 125 (212)
.|.++.+.....
T Consensus 78 id~vi~~ag~~~ 89 (260)
T PRK08267 78 LDVLFNNAGILR 89 (260)
T ss_pred CCEEEECCCCCC
Confidence 699998876543
No 445
>PRK08265 short chain dehydrogenase; Provisional
Probab=69.67 E-value=36 Score=26.75 Aligned_cols=73 Identities=25% Similarity=0.229 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.++++++-.|++.|. +...+++.|. +|+.++.++...+...+.. +.++.+++.|+.+...- .
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356788888865443 2333344455 8999999876544433322 23577888898765321 1
Q ss_pred cccEEEEcCCC
Q 028214 113 HVDTVVMNPPF 123 (212)
Q Consensus 113 ~~D~i~~nppy 123 (212)
..|.++.|..+
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 57999988654
No 446
>COG4889 Predicted helicase [General function prediction only]
Probab=69.61 E-value=7.9 Score=36.66 Aligned_cols=45 Identities=20% Similarity=0.036 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----------CCCeEEEEeCChHHHHHHHHHHh
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----------GADQVIAIDIDSDSLELASENAA 92 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----------~~~~v~~~D~~~~~~~~a~~~~~ 92 (212)
++-+|||.++|||.+..-+... ......+.||---++-.|.-|++
T Consensus 845 ~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiNIe 899 (1518)
T COG4889 845 QSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAINIE 899 (1518)
T ss_pred CCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH
Confidence 4568999999999986555431 12356677766555555655554
No 447
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=69.28 E-value=2.8 Score=33.62 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=29.7
Q ss_pred EEEEcccccCcCCCcccEEEEcCCCCCCCCCchHHHHHHHHh
Q 028214 99 DFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALK 140 (212)
Q Consensus 99 ~~~~~d~~~~~~~~~~D~i~~nppy~~~~~~~~~~~l~~~~~ 140 (212)
++.+.|+..+....++|+++.||||.....+..-..+..+.+
T Consensus 189 kv~qeDaN~LikkI~~DilYLDpPYN~rqYs~nYhLLe~IA~ 230 (330)
T COG3392 189 KVYQEDANELIKKISGDILYLDPPYNARQYSANYHLLETIAR 230 (330)
T ss_pred HHHHhhHHHHHHhcCCCEEEeCCCccccccchHHHHHHHHHh
Confidence 456667666666668999999999998866655555554443
No 448
>PRK06198 short chain dehydrogenase; Provisional
Probab=69.18 E-value=44 Score=26.00 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.++++++-.|++ |.++..++ ..|...|+.++.++.........+...+.++.++..|+.+...-
T Consensus 4 ~~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 366788888854 44544444 34553499999886655444334433333577788888754311
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
...|.++.+.-.
T Consensus 83 g~id~li~~ag~ 94 (260)
T PRK06198 83 GRLDALVNAAGL 94 (260)
T ss_pred CCCCEEEECCCc
Confidence 147998877654
No 449
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.99 E-value=3.5 Score=33.38 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCChHHHHH
Q 028214 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (212)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~ 86 (212)
|+.+.......+..... . +.+.+|++||.|.+.+.+... .+++..|++++.+..
T Consensus 8 w~GGK~~l~~~i~~~lP---~--~~~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lvn~ 61 (274)
T COG0338 8 WAGGKSKLLDQIIPHLP---E--GVSYIEPFVGGGAVFINLAAK--KKYILNDINPDLVNL 61 (274)
T ss_pred cCCchHHHHHHHHHhCC---C--CceeeCCccCcceeeeehhhh--hhhhHhcCCHHHHHH
Confidence 56665555444444443 2 229999999999999888864 478999999988743
No 450
>PRK10904 DNA adenine methylase; Provisional
Probab=68.29 E-value=6 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.1
Q ss_pred ceEEEEcccccCcCCC-cccEEEEcCCCCC
Q 028214 97 DIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (212)
Q Consensus 97 ~v~~~~~d~~~~~~~~-~~D~i~~nppy~~ 125 (212)
++++.++|+.+..... .=|+|++||||..
T Consensus 157 ~v~i~~~Df~~~i~~~~~~~fvYlDPPY~~ 186 (271)
T PRK10904 157 NAFFYCESYADSMARADKGSVVYCDPPYAP 186 (271)
T ss_pred CCEEEECCHHHHHhhcCCCcEEEECCCCCC
Confidence 5889999998875433 5679999999953
No 451
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=68.25 E-value=42 Score=24.94 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=37.6
Q ss_pred CCcC--hHHHHHHHc-C-CCeEEEEeCChH--HHH---HHHHHHhhcCC-ceE-EEEcccccCcCC-----CcccEEEEc
Q 028214 57 CGCG--TLGAAATLL-G-ADQVIAIDIDSD--SLE---LASENAADLEL-DID-FVQCDIRNLEWR-----GHVDTVVMN 120 (212)
Q Consensus 57 ~G~G--~~~~~~~~~-~-~~~v~~~D~~~~--~~~---~a~~~~~~~~~-~v~-~~~~d~~~~~~~-----~~~D~i~~n 120 (212)
+|.| +++..+++. + ...++++-.+.. ..+ .+..|++.... .+. ....|+.++... ..||.|++|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 3555 466666654 4 557777766532 222 22344443311 232 244455554432 289999999
Q ss_pred CCCCC
Q 028214 121 PPFGT 125 (212)
Q Consensus 121 ppy~~ 125 (212)
-|..-
T Consensus 83 FPH~G 87 (166)
T PF10354_consen 83 FPHVG 87 (166)
T ss_pred CCCCC
Confidence 99765
No 452
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=68.15 E-value=25 Score=28.62 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEcccccCcCCC----cccEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWRG----HVDTV 117 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~~----~~D~i 117 (212)
.++++|-.| |+|.++..+++. |. +|+++..++.............+ .+++++.+|+.+...-. ..|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 467888887 677777666643 44 78777666543332222111111 25788999988754211 57988
Q ss_pred EEcCCC
Q 028214 118 VMNPPF 123 (212)
Q Consensus 118 ~~nppy 123 (212)
+.+...
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 876543
No 453
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.13 E-value=46 Score=29.03 Aligned_cols=72 Identities=21% Similarity=0.154 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCcChH--HHHHHHcCCCeEEEEeCChH-HHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCC
Q 028214 48 SNKVVADFGCGCGTL--GAAATLLGADQVIAIDIDSD-SLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~--~~~~~~~~~~~v~~~D~~~~-~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~ 124 (212)
.+++++=+|+|.-.+ +..+++.|. +|+++|.++. ......+.++..| +++..++... ....+|+|+..|-..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~g--v~~~~~~~~~--~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALG--ATVRLGPGPT--LPEDTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcC--CEEEECCCcc--ccCCCCEEEECCCcC
Confidence 567899999884433 223334455 7999996543 3333344455554 5555554333 122689999877543
No 454
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.06 E-value=37 Score=27.13 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCc-ChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 48 SNKVVADFGCGC-GTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 48 ~~~~vlDlg~G~-G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.++++|=.|+++ +.++..++ +.|. +|+.++.++...+.+++.....+.. .+++.|+.+...-
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 567899999862 34444444 4455 7888888754333333332322323 4677888765321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
.+.|+++.|.-+.
T Consensus 82 g~iDilVnnAG~~ 94 (274)
T PRK08415 82 GKIDFIVHSVAFA 94 (274)
T ss_pred CCCCEEEECCccC
Confidence 2689999887653
No 455
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=68.06 E-value=25 Score=28.94 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----CcccEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----GHVDTVV 118 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~ 118 (212)
+++++|-.| |+|.++..+++. + ..+|++++.++............ .+++++.+|+.+...- ..+|.|+
T Consensus 3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 467888777 577777776653 3 24788888765433222222211 2588899998875421 1589998
Q ss_pred EcCCC
Q 028214 119 MNPPF 123 (212)
Q Consensus 119 ~nppy 123 (212)
.+...
T Consensus 80 h~Ag~ 84 (324)
T TIGR03589 80 HAAAL 84 (324)
T ss_pred ECccc
Confidence 76543
No 456
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=67.99 E-value=32 Score=27.03 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEe-CChHHHHHHHHHHh-hcCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAID-IDSDSLELASENAA-DLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D-~~~~~~~~a~~~~~-~~~~~v~~~~~d~~~~~~~---------- 111 (212)
.+++++|=.|++.|+ +...+++.|. +|+.+. .+++..+...+.++ ..+.++.++..|+.+...-
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467889988876664 3444445555 677664 45555444433333 2234678899998764211
Q ss_pred -CcccEEEEcCC
Q 028214 112 -GHVDTVVMNPP 122 (212)
Q Consensus 112 -~~~D~i~~npp 122 (212)
...|+++.|..
T Consensus 85 ~g~id~lv~nAg 96 (260)
T PRK08416 85 FDRVDFFISNAI 96 (260)
T ss_pred cCCccEEEECcc
Confidence 15799998763
No 457
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.98 E-value=25 Score=26.75 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccC
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (212)
..+.+|+--|+|.|+ +-..+++.|+ +|+++--++..+...-+.... .+..+++|+..+
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p~---~I~Pi~~Dls~w 65 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETPS---LIIPIVGDLSAW 65 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCCc---ceeeeEecccHH
Confidence 367888988888886 3444555555 899999988776655444332 488899998764
No 458
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.89 E-value=26 Score=29.73 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=33.5
Q ss_pred CEEEEEcCCcChHHHHHHHc-CCCeEEE---EeCChHHHHHHHHHHhhcCCceEEEEcccccC
Q 028214 50 KVVADFGCGCGTLGAAATLL-GADQVIA---IDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~~-~~~~v~~---~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (212)
..++++|||-|-++..++.. +..+++- +|-...-++.=+.....+...++=+..|+.++
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dL 246 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDL 246 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhc
Confidence 58999999999999999965 3445555 55443333332222222212333445555444
No 459
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=67.74 E-value=30 Score=27.34 Aligned_cols=68 Identities=25% Similarity=0.259 Sum_probs=37.3
Q ss_pred EEEEcCC-cCh-HHHHHHHcCCCeEEEEeCChH-------------------HHHHHHHHHhhcCC--ceEEEEccccc-
Q 028214 52 VADFGCG-CGT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCDIRN- 107 (212)
Q Consensus 52 vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~v~~~~~d~~~- 107 (212)
|+=+||| .|. +...++..|..+++.+|.|.- -.+.|.++++.... +++.+..++.+
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~~ 81 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGPE 81 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCChh
Confidence 5666665 333 344444557788888886411 12344445544432 56677776632
Q ss_pred --CcC--CCcccEEEE
Q 028214 108 --LEW--RGHVDTVVM 119 (212)
Q Consensus 108 --~~~--~~~~D~i~~ 119 (212)
+.. -.+||+|+.
T Consensus 82 ~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 82 QDFNDTFFEQFHIIVN 97 (234)
T ss_pred hhchHHHHhCCCEEEE
Confidence 111 127999986
No 460
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=67.65 E-value=62 Score=25.90 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHcCCCeEEEEeCC-hHHHHHHHHHHhhcC----CceEEEEcccc
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID-SDSLELASENAADLE----LDIDFVQCDIR 106 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~----~~v~~~~~d~~ 106 (212)
+.+..+..............|+.+|||-=....-+.. +. .+.-.|+| |+.++.-++.+...+ .+..++..|+.
T Consensus 65 ~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 3444555555443222345799999998776654432 22 24445554 667776666666533 26677778875
Q ss_pred cCcCC-----C-----cccEEEEcCCCCCCCCCchHHHHHHHHhhc
Q 028214 107 NLEWR-----G-----HVDTVVMNPPFGTRKKGVDMDFLSMALKVA 142 (212)
Q Consensus 107 ~~~~~-----~-----~~D~i~~nppy~~~~~~~~~~~l~~~~~~~ 142 (212)
. ... . ..-++++-..+...+.......++.+....
T Consensus 143 ~-~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~ 187 (260)
T TIGR00027 143 Q-DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELS 187 (260)
T ss_pred h-hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhC
Confidence 1 111 1 233555555554444555555666554443
No 461
>PRK07201 short chain dehydrogenase; Provisional
Probab=67.44 E-value=37 Score=30.77 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..+++++-.|++ |.++..++ +.|. +|+.++.++...+.....+...+.++.++..|+.+...-
T Consensus 369 ~~~k~vlItGas-~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 369 LVGKVVLITGAS-SGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 346778877754 44444444 4454 899999988777666555554444688888998764321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|+++.|..+.
T Consensus 447 g~id~li~~Ag~~ 459 (657)
T PRK07201 447 GHVDYLVNNAGRS 459 (657)
T ss_pred CCCCEEEECCCCC
Confidence 1579999887653
No 462
>PRK05855 short chain dehydrogenase; Validated
Probab=67.04 E-value=40 Score=29.77 Aligned_cols=75 Identities=28% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+.++|-.|+ +|.++..++ +.|. +|+.++.++...+.....++..+.++.++..|+.+...- .
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4567887775 555555444 3445 799999998777666666555555788899998875421 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|.-..
T Consensus 392 ~id~lv~~Ag~~ 403 (582)
T PRK05855 392 VPDIVVNNAGIG 403 (582)
T ss_pred CCcEEEECCccC
Confidence 479999887653
No 463
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=67.02 E-value=41 Score=26.25 Aligned_cols=74 Identities=26% Similarity=0.404 Sum_probs=43.8
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|-.|+..| ++..++ +.|. +|++++.++. +...+.+...+.++..++.|+.+...-
T Consensus 8 l~~k~~lItG~~~g-IG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 8 LEGKVAVVTGCDTG-LGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46788888887554 444444 4454 7888887542 222222333333577888888753211
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|+++.|.-+.
T Consensus 84 ~~~D~li~~Ag~~ 96 (253)
T PRK08993 84 GHIDILVNNAGLI 96 (253)
T ss_pred CCCCEEEECCCCC
Confidence 1589999887654
No 464
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=66.81 E-value=47 Score=25.72 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=45.6
Q ss_pred EEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Cccc
Q 028214 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHVD 115 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~D 115 (212)
+++=.|+ +|.++..++ +.|. +|+.++.++...+...+.+...+.++.++..|+.+...- ...|
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5666775 455444444 4454 899999887666555555554454678888898764321 1469
Q ss_pred EEEEcCCCC
Q 028214 116 TVVMNPPFG 124 (212)
Q Consensus 116 ~i~~nppy~ 124 (212)
.++.+....
T Consensus 80 ~vi~~ag~~ 88 (254)
T TIGR02415 80 VMVNNAGVA 88 (254)
T ss_pred EEEECCCcC
Confidence 999887653
No 465
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=66.67 E-value=12 Score=25.55 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=31.7
Q ss_pred EcCCcChHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC---CcccEEEEcC
Q 028214 55 FGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---GHVDTVVMNP 121 (212)
Q Consensus 55 lg~G~G~~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~np 121 (212)
+.||+|..+..++.. .++.++.+|..+++.+.+..+.... ..+|+|++-|
T Consensus 6 lvCg~G~STSlla~k-----------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 6 IICAAGMSSSMMAKK-----------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred EECCCchHHHHHHHH-----------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 778888855544432 3444455666677777777665432 2699999854
No 466
>PRK12829 short chain dehydrogenase; Provisional
Probab=66.67 E-value=51 Score=25.65 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|-.|++ |.++..+++ .|. +|++++.++...+...+..... ++.++..|+.+...-
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 477899988865 555555443 355 7999999877665444333222 467788888764321
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|.|+.+....
T Consensus 85 ~~~d~vi~~ag~~ 97 (264)
T PRK12829 85 GGLDVLVNNAGIA 97 (264)
T ss_pred CCCCEEEECCCCC
Confidence 1579998776543
No 467
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.61 E-value=57 Score=25.15 Aligned_cols=75 Identities=25% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++=.| |+|.++..+++ .|. +|+.++-++...+.....+...+.++.++..|+.+...- .
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567888777 55555555553 344 899999887666555444443333566788888765421 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+|+.+..+.
T Consensus 83 ~id~vi~~ag~~ 94 (250)
T PRK07774 83 GIDYLVNNAAIY 94 (250)
T ss_pred CCCEEEECCCCc
Confidence 579999877653
No 468
>PRK06914 short chain dehydrogenase; Provisional
Probab=66.48 E-value=48 Score=26.21 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=45.9
Q ss_pred CCEEEEEcCCcChHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEcccccCcCC----------C
Q 028214 49 NKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWR----------G 112 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~----------~ 112 (212)
++++|-.|++ |.++..+ +..|. +|++++-+++..+.........+ .++.++..|+.+...- .
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 4567877754 4444444 34454 89999888776655544443332 2678888998774321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.|+.+....
T Consensus 81 ~id~vv~~ag~~ 92 (280)
T PRK06914 81 RIDLLVNNAGYA 92 (280)
T ss_pred CeeEEEECCccc
Confidence 579998886553
No 469
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=66.46 E-value=49 Score=25.81 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=44.5
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.++.++.. ......+...+.++.++..|+.+...- .
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV-HEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 356788888865543 2333444454 79999987643 333333333344677788888764211 1
Q ss_pred cccEEEEcCC
Q 028214 113 HVDTVVMNPP 122 (212)
Q Consensus 113 ~~D~i~~npp 122 (212)
..|.++.|..
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 5799988764
No 470
>PRK08628 short chain dehydrogenase; Provisional
Probab=66.35 E-value=43 Score=26.07 Aligned_cols=74 Identities=28% Similarity=0.336 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
.+++++|=.|++ |.++..++ +.|. +|+.++.++...+.. +.+...+.++.++..|+.+...-
T Consensus 5 l~~~~ilItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 5 LKDKVVIVTGGA-SGIGAAISLRLAEEGA-IPVIFGRSAPDDEFA-EELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred cCCCEEEEeCCC-ChHHHHHHHHHHHcCC-cEEEEcCChhhHHHH-HHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 467788888865 44444444 4455 688888777655333 33333344678888888764321
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
...|.|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (258)
T PRK08628 82 GRIDGLVNNAGV 93 (258)
T ss_pred CCCCEEEECCcc
Confidence 157999988764
No 471
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=66.35 E-value=55 Score=28.09 Aligned_cols=78 Identities=24% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCcChHHH---HHH-HcCCCeEEEEeCChHHH------------HHHHHHHhhcCCceEEEEcccccCcCC
Q 028214 48 SNKVVADFGCGCGTLGA---AAT-LLGADQVIAIDIDSDSL------------ELASENAADLELDIDFVQCDIRNLEWR 111 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~---~~~-~~~~~~v~~~D~~~~~~------------~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (212)
.++++|-.|+.+|.-.. ..+ ..|. .+++++...... +...+.++..|..+..+++|+.+....
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v 118 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAFGAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK 118 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHHHcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 46799999998876322 112 3444 678887533211 123333444454566788898764221
Q ss_pred -----------CcccEEEEcCCCCCC
Q 028214 112 -----------GHVDTVVMNPPFGTR 126 (212)
Q Consensus 112 -----------~~~D~i~~nppy~~~ 126 (212)
.+.|+++-|..|...
T Consensus 119 ~~lie~I~e~~G~IDiLVnSaA~~~r 144 (398)
T PRK13656 119 QKVIELIKQDLGQVDLVVYSLASPRR 144 (398)
T ss_pred HHHHHHHHHhcCCCCEEEECCccCCC
Confidence 178999999888755
No 472
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=66.09 E-value=17 Score=31.74 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEcCCcChHHHHHHHc--C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcc----
Q 028214 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCD---- 104 (212)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vlDlg~G~G~~~~~~~~~--~-~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d---- 104 (212)
...+.+......-+....+.++|+|.|.|.-.-.+... . ...++.||.+..+.+....+.+.-...-+.+...
T Consensus 184 ~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~ 263 (491)
T KOG2539|consen 184 LVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFH 263 (491)
T ss_pred HHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchh
Confidence 34444444444335567788999999988754444432 2 4578899999999999988887511111111111
Q ss_pred --cccCcCCCcccEEEEcCCCCCCCCCchH
Q 028214 105 --IRNLEWRGHVDTVVMNPPFGTRKKGVDM 132 (212)
Q Consensus 105 --~~~~~~~~~~D~i~~nppy~~~~~~~~~ 132 (212)
....+....||+|++.--.++...+...
T Consensus 264 r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R 293 (491)
T KOG2539|consen 264 RQRLPIDIKNGYDLVICAHKLHELGSKFSR 293 (491)
T ss_pred cccCCCCcccceeeEEeeeeeeccCCchhh
Confidence 1122222379999987665555444433
No 473
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=65.48 E-value=17 Score=30.06 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCc-ChHHHHHHH--cCCCeEEEEeCChHHHHHHHH
Q 028214 47 VSNKVVADFGCGC-GTLGAAATL--LGADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 47 ~~~~~vlDlg~G~-G~~~~~~~~--~~~~~v~~~D~~~~~~~~a~~ 89 (212)
.++++|+-.|||. |.+++.+++ .+..+|+++|.++.-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4688999998752 223344444 345689999999888888764
No 474
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=65.45 E-value=33 Score=28.42 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCcChHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----CcccEEEE
Q 028214 48 SNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----GHVDTVVM 119 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~ 119 (212)
.+++||-.| |+|.++..+++. |. +|++++-++............ +.+++++.+|+.+...- ..+|.|+-
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 567888888 578777777653 44 788887765433322222211 22588889998764311 15788886
Q ss_pred cCCC
Q 028214 120 NPPF 123 (212)
Q Consensus 120 nppy 123 (212)
....
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 5543
No 475
>PRK06182 short chain dehydrogenase; Validated
Probab=65.38 E-value=34 Score=27.01 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
++++++=.|++ |.++..+++ .|. +|++++.+++.++.... . ++.++.+|+.+...- .
T Consensus 2 ~~k~vlItGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~----~--~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QKKVALVTGAS-SGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS----L--GVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----C--CCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 35678877754 445555543 344 89999988766543321 1 367788888764321 1
Q ss_pred cccEEEEcCCCCC
Q 028214 113 HVDTVVMNPPFGT 125 (212)
Q Consensus 113 ~~D~i~~nppy~~ 125 (212)
..|+++.|..+..
T Consensus 74 ~id~li~~ag~~~ 86 (273)
T PRK06182 74 RIDVLVNNAGYGS 86 (273)
T ss_pred CCCEEEECCCcCC
Confidence 5799999887654
No 476
>PLN02253 xanthoxin dehydrogenase
Probab=65.32 E-value=48 Score=26.25 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~----------- 111 (212)
..++++|-.|+ +|.++..++ +.|. +|+.++.++...+.....+.. +.++.+++.|+.+...-
T Consensus 16 l~~k~~lItGa-s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 16 LLGKVALVTGG-ATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 35678888885 455555544 3444 899999887655444433321 22577888888764321
Q ss_pred CcccEEEEcCCC
Q 028214 112 GHVDTVVMNPPF 123 (212)
Q Consensus 112 ~~~D~i~~nppy 123 (212)
...|.++.|.-.
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 157999987644
No 477
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=64.81 E-value=12 Score=29.44 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhcCCceEEEEcccccCcCCC--cccEEEEcCCCCC
Q 028214 81 SDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVMNPPFGT 125 (212)
Q Consensus 81 ~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~D~i~~nppy~~ 125 (212)
...+......+. ++++.+.|........ .-|+|++||||..
T Consensus 147 ~~~l~~~~~~l~----~~~i~~~d~~~~~~~~~~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 147 LERLEKFSQRLQ----NVEIENRDFDEVIERYDSPNDFVYLDPPYYS 189 (260)
T ss_dssp HHHHHHHHHHHH----HEEEEEC-CHGGGTT--TTE-EEEE--S-TT
T ss_pred HHHHHHHHHHhC----CceeEehhHHHHHhhccCCCeEEEEcCcccc
Confidence 333444444444 4788888888776543 6889999999987
No 478
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=64.79 E-value=48 Score=25.96 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|-.|++.|. +...+++.|. +|+.++.++..++...+.. +.++.+++.|+.+...- .
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 357788988876554 2333444454 7999999877665544332 22567788887764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|+++.|..+.
T Consensus 80 ~id~li~~ag~~ 91 (263)
T PRK06200 80 KLDCFVGNAGIW 91 (263)
T ss_pred CCCEEEECCCCc
Confidence 579999887653
No 479
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.41 E-value=22 Score=29.90 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCc-Ch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEcc
Q 028214 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (212)
Q Consensus 48 ~~~~vlDlg~G~-G~-~~~~~~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~v~~~~~d 104 (212)
+..+|+=+|||. |. ++..+++.|..+++.+|-|. .-.+.+.++++..+. +++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 568999999983 44 45566677888898888653 223555666655443 45555444
Q ss_pred cccCc---CCCcccEEEEc
Q 028214 105 IRNLE---WRGHVDTVVMN 120 (212)
Q Consensus 105 ~~~~~---~~~~~D~i~~n 120 (212)
+.... .-..+|+|+.-
T Consensus 107 i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 107 LTWSNALDELRDADVILDG 125 (355)
T ss_pred cCHHHHHHHHhCCCEEEEC
Confidence 43211 11279998863
No 480
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=64.24 E-value=55 Score=25.24 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=46.5
Q ss_pred CEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------Ccc
Q 028214 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (212)
Q Consensus 50 ~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~~~ 114 (212)
+++|=.| |+|.++..+++ .|. +|++++.++...+.........+.++.++..|+.+...- ...
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 3566666 55666665554 344 899999987766655554444444688889998865310 157
Q ss_pred cEEEEcCCC
Q 028214 115 DTVVMNPPF 123 (212)
Q Consensus 115 D~i~~nppy 123 (212)
|.|+.+.-.
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 988877654
No 481
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.23 E-value=29 Score=28.72 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=38.8
Q ss_pred EEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEccccc
Q 028214 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCDIRN 107 (212)
Q Consensus 51 ~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (212)
+|+=+||| .|. ++..++..|..+++.+|.|. .-.+.|.+.++..+. +++....++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 36667765 232 33444455878888888541 112444555554332 66777777664
Q ss_pred CcC----CCcccEEEE
Q 028214 108 LEW----RGHVDTVVM 119 (212)
Q Consensus 108 ~~~----~~~~D~i~~ 119 (212)
... -.+||+|+.
T Consensus 81 ~~~~~~f~~~~DvVv~ 96 (312)
T cd01489 81 PDFNVEFFKQFDLVFN 96 (312)
T ss_pred ccchHHHHhcCCEEEE
Confidence 311 128999886
No 482
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=64.21 E-value=21 Score=28.10 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=24.5
Q ss_pred CCCEEEEEcCC-cChH-HHHHHHcCCCeEEEEeCC
Q 028214 48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDID 80 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~~-~~~~~~~~~~~v~~~D~~ 80 (212)
...+|+=+||| .|.. ...+++.|..+++-+|-|
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 56789999997 5553 455556788889988865
No 483
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=64.19 E-value=44 Score=26.60 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC----------CC-c
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW----------RG-H 113 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~----------~~-~ 113 (212)
+++.++--|+.+|+ ....++..|. +|+...-..+.++.....+.. ..+.+...|+.+... .. +
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 56788888988886 4555566666 899999999888877776654 256777888776532 11 7
Q ss_pred ccEEEEcCCCCCC
Q 028214 114 VDTVVMNPPFGTR 126 (212)
Q Consensus 114 ~D~i~~nppy~~~ 126 (212)
.|+++.|--....
T Consensus 82 iDiLvNNAGl~~g 94 (246)
T COG4221 82 IDILVNNAGLALG 94 (246)
T ss_pred ccEEEecCCCCcC
Confidence 9999988655443
No 484
>PRK08251 short chain dehydrogenase; Provisional
Probab=64.14 E-value=57 Score=25.18 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=47.5
Q ss_pred CCEEEEEcCCcChHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccCcCC-----------
Q 028214 49 NKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR----------- 111 (212)
Q Consensus 49 ~~~vlDlg~G~G~~~~~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~~~----------- 111 (212)
+++++-.| |+|.++..+++ .+ .+|+.++.++...+.....+... +.++.++..|+.+...-
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35677777 45665555553 34 48999998887766555544332 33688889998865311
Q ss_pred CcccEEEEcCCCC
Q 028214 112 GHVDTVVMNPPFG 124 (212)
Q Consensus 112 ~~~D~i~~nppy~ 124 (212)
...|.++.|.-+.
T Consensus 80 ~~id~vi~~ag~~ 92 (248)
T PRK08251 80 GGLDRVIVNAGIG 92 (248)
T ss_pred CCCCEEEECCCcC
Confidence 1579999887553
No 485
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=64.08 E-value=44 Score=26.12 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcC----C--CcccEE
Q 028214 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW----R--GHVDTV 117 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~----~--~~~D~i 117 (212)
..++++-.|+ +|.++..++ ..+ .+|+++.-++....... .. +.+++++.+|+.+... . ..+|+|
T Consensus 16 ~~~~ilItGa-sG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~---~~-~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGA-TGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKTSL---PQ-DPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECC-CcHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhc---cc-CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 4578888884 444444443 334 47888876655432211 11 1257889999876311 1 258999
Q ss_pred EEcCCCC
Q 028214 118 VMNPPFG 124 (212)
Q Consensus 118 ~~nppy~ 124 (212)
+++++..
T Consensus 90 i~~~g~~ 96 (251)
T PLN00141 90 ICATGFR 96 (251)
T ss_pred EECCCCC
Confidence 9988764
No 486
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=63.81 E-value=57 Score=25.16 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
.+++++|=.|++.|. +...+++.|. +|+.++-++. ..+.+.....+.++.++..|+.+...- .
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 367889999976543 2333334455 8988887642 223333333333577888888764321 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.++.+..+.
T Consensus 80 ~~d~li~~ag~~ 91 (248)
T TIGR01832 80 HIDILVNNAGII 91 (248)
T ss_pred CCCEEEECCCCC
Confidence 589999887654
No 487
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=63.67 E-value=27 Score=27.71 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=23.5
Q ss_pred CCCEEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCC
Q 028214 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (212)
Q Consensus 48 ~~~~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~ 80 (212)
...+|+=+||| .|. ++..+++.|..+++.+|-|
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 67899999997 344 4555556687788888754
No 488
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.64 E-value=43 Score=26.23 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCc-ChHH----HHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGC-GTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~-G~~~----~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------- 111 (212)
..+++++-.|+++ +.++ ..+++.|. +|+.++.+....+.+++.. +..+.+++.|+.+...-
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678899999873 3444 44444455 7888877644333332221 11467788888754211
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
.+.|+++.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 1589999887654
No 489
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=63.62 E-value=37 Score=25.89 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCc-Ch-HHHHHHHcCCCeEEEEeCChH-------------------HHHHHHHHHhhcCC--ceEEEEcc
Q 028214 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCD 104 (212)
Q Consensus 48 ~~~~vlDlg~G~-G~-~~~~~~~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~v~~~~~d 104 (212)
...+|+=+|||. |. +...++..|..+++.+|-+.- -.+.+.++++..+. +++.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 567899998874 22 344444568888999986521 12444555555443 45555554
Q ss_pred cccCcCC--CcccEEEEc
Q 028214 105 IRNLEWR--GHVDTVVMN 120 (212)
Q Consensus 105 ~~~~~~~--~~~D~i~~n 120 (212)
+.+.... .+||+|+..
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 4322111 289999864
No 490
>PRK06114 short chain dehydrogenase; Provisional
Probab=63.16 E-value=66 Score=25.04 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCcChHHHHHH----HcCCCeEEEEeCCh-HHHHHHHHHHhhcCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------- 111 (212)
.+++++|-.|++. .++..++ +.|. +|+.++.+. ..++...+.+...+.++.++..|+.+...-
T Consensus 6 ~~~k~~lVtG~s~-gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 6 LDGQVAFVTGAGS-GIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3677888888544 4554444 3354 888888764 233444444444344677888888764311
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
.+.|.++.|....
T Consensus 84 ~g~id~li~~ag~~ 97 (254)
T PRK06114 84 LGALTLAVNAAGIA 97 (254)
T ss_pred cCCCCEEEECCCCC
Confidence 1479999888654
No 491
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=63.10 E-value=45 Score=26.95 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCC-cChH-HHHHHHcCCCeEEEEeCC
Q 028214 47 VSNKVVADFGCG-CGTL-GAAATLLGADQVIAIDID 80 (212)
Q Consensus 47 ~~~~~vlDlg~G-~G~~-~~~~~~~~~~~v~~~D~~ 80 (212)
..+.+|+=+||| .|.. +..+++.|..+++.+|.|
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467899999998 5654 444556677789988865
No 492
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.89 E-value=44 Score=26.59 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCc--Ch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGCGC--GT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~G~--G~---~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------- 111 (212)
.+++++|-.|++. |+ ++..+++.|. +|+.++.++...+..++..+..+ ....++.|+.+...-
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 3678899999875 42 3444445555 78888776543333333323223 223577888764321
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
...|+++.|.-..
T Consensus 83 ~g~iD~lVnnAG~~ 96 (271)
T PRK06505 83 WGKLDFVVHAIGFS 96 (271)
T ss_pred hCCCCEEEECCccC
Confidence 2689999887543
No 493
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.75 E-value=28 Score=27.19 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=39.1
Q ss_pred EEEEEcCCcChHHHHHH----HcCCCeEEEEeCChHHHHHHHH-HHhhcCCceEEEEcccccCcC--C---CcccEEEEc
Q 028214 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASE-NAADLELDIDFVQCDIRNLEW--R---GHVDTVVMN 120 (212)
Q Consensus 51 ~vlDlg~G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~--~---~~~D~i~~n 120 (212)
+++=+||| .++..++ +.|. .|+.+|.+++.++.... .. ....+++|..+... + ..+|+++.-
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~-----~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL-----DTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc-----ceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 45556665 4444443 4444 89999999988776433 22 46788888776431 1 179988864
No 494
>PRK06500 short chain dehydrogenase; Provisional
Probab=62.56 E-value=64 Score=24.80 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCcChHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC-----------C
Q 028214 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 112 (212)
++++++=.|++. .++..+ ++.|. +|++++.++..++...+.. +.++.+++.|..+.... .
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 566788777654 444443 34455 8999998876554443332 33566777787654211 1
Q ss_pred cccEEEEcCCCC
Q 028214 113 HVDTVVMNPPFG 124 (212)
Q Consensus 113 ~~D~i~~nppy~ 124 (212)
..|.++.+..+.
T Consensus 80 ~id~vi~~ag~~ 91 (249)
T PRK06500 80 RLDAVFINAGVA 91 (249)
T ss_pred CCCEEEECCCCC
Confidence 579999887654
No 495
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=62.41 E-value=15 Score=33.66 Aligned_cols=74 Identities=19% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCcChHHHHHH-Hc-------C-----CCeEEEEeCChHH---HHHH-----------HHHHhh-----cC
Q 028214 48 SNKVVADFGCGCGTLGAAAT-LL-------G-----ADQVIAIDIDSDS---LELA-----------SENAAD-----LE 95 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~~~-~~-------~-----~~~v~~~D~~~~~---~~~a-----------~~~~~~-----~~ 95 (212)
+.-+|+|+|=|+|.-.+... .. . .-+++++|..|-. +..+ ++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34589999999997433333 11 1 2378999975422 2211 111111 11
Q ss_pred ----------CceEEEEcccccCcCCC--cccEEEEcC
Q 028214 96 ----------LDIDFVQCDIRNLEWRG--HVDTVVMNP 121 (212)
Q Consensus 96 ----------~~v~~~~~d~~~~~~~~--~~D~i~~np 121 (212)
+.++++.+|+.+..... .+|+++.|+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~ 174 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG 174 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC
Confidence 14568889988755432 699999996
No 496
>PRK08278 short chain dehydrogenase; Provisional
Probab=62.34 E-value=53 Score=26.05 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHHHcCCCeEEEEeCChHH-------HHHHHHHHhhcCCceEEEEcccccCcCC------
Q 028214 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDS-------LELASENAADLELDIDFVQCDIRNLEWR------ 111 (212)
Q Consensus 48 ~~~~vlDlg~G~G~---~~~~~~~~~~~~v~~~D~~~~~-------~~~a~~~~~~~~~~v~~~~~d~~~~~~~------ 111 (212)
.+++++=.|++.|. +...+++.|. +|+.++.+... ++...+.+...+.++.++..|+.+...-
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 56788888875543 2333334455 78888876431 3333333344444677888888765321
Q ss_pred -----CcccEEEEcCCCC
Q 028214 112 -----GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -----~~~D~i~~nppy~ 124 (212)
...|.++.+..+.
T Consensus 84 ~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 84 AVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHhCCCCEEEECCCCc
Confidence 1589999887654
No 497
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=62.06 E-value=48 Score=26.42 Aligned_cols=45 Identities=40% Similarity=0.501 Sum_probs=29.6
Q ss_pred CCCCCCEEEEEcCC-cChHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 028214 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (212)
Q Consensus 45 ~~~~~~~vlDlg~G-~G~~~~~~~~~-~~~~v~~~D~~~~~~~~a~~ 89 (212)
...++++|+-.|+| .|..++.+++. |..+|+++|.++...+.+++
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 34478889888764 22234444433 55569999999888777765
No 498
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.61 E-value=52 Score=25.93 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=44.4
Q ss_pred CCCCEEEEEcC-CcChHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCC----------
Q 028214 47 VSNKVVADFGC-GCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (212)
Q Consensus 47 ~~~~~vlDlg~-G~G~~~~~~~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~---------- 111 (212)
.+++++|=.|+ |++.++..++ +.|. +|+..+.+....+.+++.....+ ....++.|+.+...-
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHHH
Confidence 36788999997 3555555555 3455 77777655433333333333222 234677888764221
Q ss_pred -CcccEEEEcCCCC
Q 028214 112 -GHVDTVVMNPPFG 124 (212)
Q Consensus 112 -~~~D~i~~nppy~ 124 (212)
.+.|+++.|.-..
T Consensus 82 ~g~iD~lVnnAG~~ 95 (261)
T PRK08690 82 WDGLDGLVHSIGFA 95 (261)
T ss_pred hCCCcEEEECCccC
Confidence 1689999987654
No 499
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=61.26 E-value=44 Score=23.68 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEEcCC-cCh-HHHHHHHcCCCeEEEEeCC
Q 028214 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (212)
Q Consensus 51 ~vlDlg~G-~G~-~~~~~~~~~~~~v~~~D~~ 80 (212)
+|+=+||| .|. +...+++.|..+++.+|-+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 36667776 343 3444555677788888865
No 500
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.22 E-value=38 Score=29.79 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCcChHHHH--HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccCcCCCcccEEEEcCCCCC
Q 028214 48 SNKVVADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (212)
Q Consensus 48 ~~~~vlDlg~G~G~~~~~--~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~nppy~~ 125 (212)
.+++++=+|.|.-..+.. +...|. +|++.|.++...+. ++..+ +.+..++...... ..+|+|+..|....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~----l~~~g--~~~~~~~~~~~~l-~~~D~VV~SpGi~~ 82 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP----HAERG--VATVSTSDAVQQI-ADYALVVTSPGFRP 82 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH----HHhCC--CEEEcCcchHhHh-hcCCEEEECCCCCC
Confidence 678899999885444333 334454 89999977654332 23333 4444333211101 25899999986543
Done!