BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028215
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I33|A Chain A, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I33|B Chain B, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I34|A Chain A, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
pdb|2I34|B Chain B, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
Length = 258
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 92 SGYSLKHAK--SANVSAGDGKDAWVFDIDETLLSNLPYYAAH---GFGSEIFNEDAFDEW 146
GY+ K +A + K A V D+DET+L N P+ A G G +D+W
Sbjct: 39 QGYNTGQLKLDAALAKGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPY----KWDDW 94
Query: 147 VDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAG 194
++ A+A ALP S+ F K + G I+ ++ R Q + T KNL G
Sbjct: 95 INKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVG 142
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 116 DIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLL 175
D+DET+L N PY ++ F+ + WVD ++ A+P ++ F + K+F +
Sbjct: 64 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 176 TGRNEFQRNTTEK 188
T R +++TEK
Sbjct: 124 TNR----KDSTEK 132
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 116 DIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLL 175
++DET+L N PY ++ F+ + WVD ++ A+P ++ F + K+F +
Sbjct: 64 NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 176 TGRNEFQRNTTEK 188
T R +++TEK
Sbjct: 124 TNR----KDSTEK 132
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 116 DIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLL 175
D++ET+L N PY ++ F+ + WVD ++ A+P ++ F + K+F +
Sbjct: 64 DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 176 TGRNEFQRNTTEK 188
T R +++TEK
Sbjct: 124 TNR----KDSTEK 132
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 116 DIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLL 175
D+DET+L N PY ++ F+ + WVD ++ A+P ++ F + K+F +
Sbjct: 65 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 176 TGRNEFQRNTTEK 188
T R ++++EK
Sbjct: 125 TNR----KDSSEK 133
>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
Length = 260
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 116 DIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLL 175
D+DET++ N Y + F+ + +WVD ++ A+P ++ F + G +F +
Sbjct: 64 DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 176 TG-RNEFQRNTT---EKNLLFAGYSDWKKLFLR 204
+ R++ ++ T K L F G +D K L L+
Sbjct: 124 SNRRDDVEKAGTVDDMKRLGFTGVND-KTLLLK 155
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 111 DAWVFDIDETLLSNLPYYAAHGF-----------GSEIFNED-AFDEWVDL-AKAPALPA 157
D W F D+ L+ LP Y HG GS IF D+ +DL A+A L
Sbjct: 189 DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXARATVLXG 248
Query: 158 SLTFYKELKQ 167
TFY L Q
Sbjct: 249 VPTFYTRLLQ 258
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 111 DAWVFDIDETLLSNLPYYAAHGF-----------GSEIFNED-AFDEWVDL-AKAPALPA 157
D W F D+ L+ LP Y HG GS IF D +DL A+A L
Sbjct: 189 DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG 248
Query: 158 SLTFYKELKQ 167
TFY L Q
Sbjct: 249 VPTFYTRLLQ 258
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 111 DAWVFDIDETLLSNLPYYAAHGF-----------GSEIFNED-AFDEWVDL-AKAPALPA 157
D W F D+ L+ LP Y HG GS IF D +DL A+A L
Sbjct: 189 DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG 248
Query: 158 SLTFYKELKQ 167
TFY L Q
Sbjct: 249 VPTFYTRLLQ 258
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 111 DAWVFDIDETLLSNLPYYAAHGF-----------GSEIFNED-AFDEWVDL-AKAPALPA 157
D W F D+ L+ LP Y HG GS IF D +DL A+A L
Sbjct: 189 DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG 248
Query: 158 SLTFYKELKQ 167
TFY L Q
Sbjct: 249 VPTFYTRLLQ 258
>pdb|1PA6|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PH3|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggtg
pdb|1PH4|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggcg
pdb|1PH7|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgigg
pdb|1PH8|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgcgg
pdb|1PH9|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
Length = 460
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 37 GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSL 96
D++++A D + +E +D EW V GY
Sbjct: 324 SDKELQAQDTFRTQFYVTKIEPSDVKEW--------------------------VKGYDR 357
Query: 97 KHAKSANVSAGDGKDAWVFDID------ETLLSNLPY----YAAHGFGSEIFNEDA 142
K KS+++ GK +F + T L+N Y Y G G+ FN A
Sbjct: 358 KTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKA 413
>pdb|1PH1|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttggggt
pdb|1PH6|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgtgg
pdb|1PHJ|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna Gg(3dr)
Gttttgggg
Length = 461
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 37 GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSL 96
D++++A D + +E +D EW V GY
Sbjct: 325 SDKELQAQDTFRTQFYVTKIEPSDVKEW--------------------------VKGYDR 358
Query: 97 KHAKSANVSAGDGKDAWVFDID------ETLLSNLPY----YAAHGFGSEIFNEDA 142
K KS+++ GK +F + T L+N Y Y G G+ FN A
Sbjct: 359 KTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKA 414
>pdb|1PH2|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg
pdb|1PH5|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg(3dr)gg
Length = 459
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 37 GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSL 96
D++++A D + +E +D EW V GY
Sbjct: 324 SDKELQAQDTFRTQFYVTKIEPSDVKEW--------------------------VKGYDR 357
Query: 97 KHAKSANVSAGDGKDAWVFDID------ETLLSNLPY----YAAHGFGSEIFNEDA 142
K KS+++ GK +F + T L+N Y Y G G+ FN A
Sbjct: 358 KTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKA 413
>pdb|1OTC|A Chain A, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
pdb|1KIX|A Chain A, Dimeric Structure Of The O. Nova Telomere End Binding
Protein Alpha Subunit With Bound Ssdna
pdb|2I0Q|A Chain A, Crystal Structure Of A Telomere Single-Strand Dna-Protein
Complex From O. Nova With Full-Length Alpha And Beta
Telomere Proteins
Length = 495
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 37 GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSL 96
D++++A D + +E +D EW V GY
Sbjct: 359 SDKELQAQDTFRTQFYVTKIEPSDVKEW--------------------------VKGYDR 392
Query: 97 KHAKSANVSAGDGKDAWVFDID------ETLLSNLPY----YAAHGFGSEIFNEDA 142
K KS+++ GK +F + T L+N Y Y G G+ FN A
Sbjct: 393 KTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKA 448
>pdb|4EPS|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04982)
From Bacteroides Ovatus Atcc 8483 At 1.85 A Resolution
Length = 510
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 27/149 (18%)
Query: 73 EFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLL----SNLPYY 128
E G++Y +D +VSG + AK + G WV + ++L + PY
Sbjct: 263 EVTHHLQVGDYYYADGSVVSGNEAEPAKDNCI----GIVCWVGNPXPSVLYKDVAGTPYT 318
Query: 129 AA------------HGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLT 176
A HG ++ E +PAL S+ + +T
Sbjct: 319 ATNDALLRSHPNCVHGLVXSLYTETG-------KFSPALTQSIHDWFXTTSFTSSYVSVT 371
Query: 177 GRNEFQRNTTEKNLLFAGYSDWKKLFLRY 205
G + N K L F GY++ + L L Y
Sbjct: 372 GYYDANENNKNKPLRFLGYNNSEVLDLYY 400
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 27.7 bits (60), Expect = 4.6, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 46 ELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSA--N 103
E+ WRF++E GE+DS T H+ +D GY+ K SA
Sbjct: 749 EINKQGWRFAIEWGHGGEYDS-------------TFHHWAADL-TYGGYTNKGINSAITR 794
Query: 104 VSAGDGKDAWVFD 116
KDAWV D
Sbjct: 795 FIRNHQKDAWVGD 807
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,824,646
Number of Sequences: 62578
Number of extensions: 290792
Number of successful extensions: 621
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 20
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)