Query 028215
Match_columns 212
No_of_seqs 340 out of 1451
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 5.6E-53 1.2E-57 359.0 17.5 166 42-208 10-175 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 5.9E-53 1.3E-57 365.0 15.4 164 43-209 37-201 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 1.8E-38 3.8E-43 270.8 0.6 162 42-208 9-170 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 99.9 2E-23 4.4E-28 181.7 13.0 135 72-207 37-174 (266)
5 COG2503 Predicted secreted aci 99.8 4.8E-20 1E-24 156.6 9.9 117 87-204 52-176 (274)
6 PRK11009 aphA acid phosphatase 99.6 1.2E-15 2.6E-20 131.0 10.6 98 109-206 62-170 (237)
7 TIGR01672 AphA HAD superfamily 99.5 1.2E-13 2.6E-18 118.7 11.2 95 109-206 62-168 (237)
8 TIGR01689 EcbF-BcbF capsule bi 99.4 3.6E-13 7.8E-18 105.3 8.6 75 111-206 2-88 (126)
9 smart00775 LNS2 LNS2 domain. T 99.0 1.2E-09 2.6E-14 88.2 8.3 80 112-207 1-85 (157)
10 PRK13288 pyrophosphatase PpaX; 99.0 4.7E-09 1E-13 87.4 9.9 92 109-203 2-129 (214)
11 COG0637 Predicted phosphatase/ 98.9 3E-09 6.4E-14 90.1 8.0 90 110-202 2-132 (221)
12 PRK13226 phosphoglycolate phos 98.9 7E-09 1.5E-13 87.7 10.1 93 109-204 11-143 (229)
13 PRK13225 phosphoglycolate phos 98.9 7.1E-09 1.5E-13 90.7 10.4 93 108-203 60-189 (273)
14 PF13344 Hydrolase_6: Haloacid 98.9 2.9E-09 6.2E-14 79.9 6.2 58 113-197 1-58 (101)
15 PLN02770 haloacid dehalogenase 98.9 8.3E-09 1.8E-13 88.5 9.8 51 150-203 105-155 (248)
16 PF08235 LNS2: LNS2 (Lipin/Ned 98.9 4.7E-09 1E-13 85.0 7.0 78 112-205 1-83 (157)
17 COG0546 Gph Predicted phosphat 98.9 1.4E-08 3.1E-13 85.5 9.9 93 109-204 3-137 (220)
18 TIGR01449 PGP_bact 2-phosphogl 98.9 1.3E-08 2.9E-13 84.0 9.1 50 151-203 83-132 (213)
19 PRK14988 GMP/IMP nucleotidase; 98.9 7.2E-09 1.6E-13 87.7 7.5 50 151-203 91-140 (224)
20 PRK11587 putative phosphatase; 98.9 2E-08 4.2E-13 84.2 10.1 91 109-202 2-129 (218)
21 PHA02530 pseT polynucleotide k 98.8 3.7E-08 7.9E-13 86.1 11.9 109 68-194 113-228 (300)
22 PLN03243 haloacid dehalogenase 98.8 2.3E-08 4.9E-13 86.9 9.4 50 151-203 107-156 (260)
23 TIGR01454 AHBA_synth_RP 3-amin 98.8 3.3E-08 7.1E-13 81.7 9.2 48 150-200 72-119 (205)
24 PRK13223 phosphoglycolate phos 98.8 4.8E-08 1E-12 85.1 10.7 94 107-203 10-148 (272)
25 PLN02575 haloacid dehalogenase 98.8 2.8E-08 6.1E-13 90.8 9.5 94 107-203 128-263 (381)
26 TIGR02009 PGMB-YQAB-SF beta-ph 98.8 4.9E-08 1.1E-12 78.7 9.6 48 151-203 86-133 (185)
27 TIGR03351 PhnX-like phosphonat 98.8 3.1E-08 6.7E-13 82.5 8.5 47 151-200 85-133 (220)
28 PRK13222 phosphoglycolate phos 98.8 7.1E-08 1.5E-12 80.2 10.6 50 151-203 91-140 (226)
29 TIGR01422 phosphonatase phosph 98.7 6.9E-08 1.5E-12 82.5 9.7 45 151-198 97-141 (253)
30 TIGR01684 viral_ppase viral ph 98.7 4.3E-08 9.2E-13 86.6 8.4 69 109-204 125-194 (301)
31 TIGR01548 HAD-SF-IA-hyp1 haloa 98.7 5.5E-08 1.2E-12 80.1 8.7 48 153-203 106-153 (197)
32 PLN02645 phosphoglycolate phos 98.7 2.6E-08 5.6E-13 88.4 7.2 64 108-198 26-89 (311)
33 TIGR02253 CTE7 HAD superfamily 98.7 5.8E-08 1.3E-12 80.7 8.4 47 151-200 92-138 (221)
34 PRK10826 2-deoxyglucose-6-phos 98.7 1.2E-07 2.7E-12 79.3 10.4 50 151-203 90-139 (222)
35 TIGR01990 bPGM beta-phosphoglu 98.7 1.2E-07 2.6E-12 76.5 9.7 47 152-203 86-132 (185)
36 TIGR01428 HAD_type_II 2-haloal 98.7 1.4E-07 2.9E-12 77.5 9.7 47 151-200 90-136 (198)
37 TIGR01662 HAD-SF-IIIA HAD-supe 98.7 3.3E-08 7.2E-13 76.3 5.6 68 111-196 1-73 (132)
38 PF06941 NT5C: 5' nucleotidase 98.7 3.7E-08 8.1E-13 81.3 6.1 91 113-204 5-129 (191)
39 PRK06698 bifunctional 5'-methy 98.7 6.7E-08 1.5E-12 90.0 8.3 50 151-203 328-377 (459)
40 cd01427 HAD_like Haloacid deha 98.7 5.7E-08 1.2E-12 72.7 6.4 66 112-198 1-66 (139)
41 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.6 6.3E-08 1.4E-12 83.8 6.9 63 111-196 2-64 (257)
42 PRK10444 UMP phosphatase; Prov 98.6 7E-08 1.5E-12 83.3 7.1 60 110-196 1-60 (248)
43 TIGR01452 PGP_euk phosphoglyco 98.6 7.8E-08 1.7E-12 83.9 7.1 61 110-197 2-62 (279)
44 TIGR01656 Histidinol-ppas hist 98.6 8.1E-08 1.8E-12 76.1 6.2 70 111-196 1-82 (147)
45 TIGR00338 serB phosphoserine p 98.6 1.7E-07 3.7E-12 78.0 8.0 85 109-198 13-127 (219)
46 PLN02954 phosphoserine phospha 98.6 3.4E-07 7.4E-12 76.5 9.5 86 108-196 10-124 (224)
47 PRK01158 phosphoglycolate phos 98.6 1.5E-07 3.2E-12 78.9 7.0 60 110-198 3-62 (230)
48 PLN02940 riboflavin kinase 98.6 3E-07 6.6E-12 84.0 9.5 93 108-203 9-141 (382)
49 PLN02779 haloacid dehalogenase 98.6 4.8E-07 1E-11 79.5 10.4 33 152-184 143-175 (286)
50 PHA03398 viral phosphatase sup 98.5 3.2E-07 6.8E-12 81.2 8.5 69 109-204 127-196 (303)
51 PRK10530 pyridoxal phosphate ( 98.5 2E-07 4.4E-12 79.8 7.1 59 110-197 3-61 (272)
52 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 3.5E-07 7.6E-12 78.0 8.3 67 108-202 6-73 (242)
53 PRK10976 putative hydrolase; P 98.5 2.3E-07 4.9E-12 79.7 7.1 60 110-198 2-61 (266)
54 PRK10725 fructose-1-P/6-phosph 98.5 6.8E-07 1.5E-11 72.4 9.5 91 108-203 3-133 (188)
55 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 3E-07 6.4E-12 75.0 7.3 45 151-198 78-122 (201)
56 PRK15126 thiamin pyrimidine py 98.5 2.7E-07 5.8E-12 79.7 7.3 60 110-198 2-61 (272)
57 PRK13478 phosphonoacetaldehyde 98.5 9.1E-07 2E-11 76.4 10.6 45 151-198 99-143 (267)
58 TIGR01549 HAD-SF-IA-v1 haloaci 98.5 3.6E-07 7.9E-12 71.9 7.3 73 112-184 1-95 (154)
59 TIGR01664 DNA-3'-Pase DNA 3'-p 98.5 5.8E-07 1.3E-11 73.1 8.5 75 109-197 12-95 (166)
60 TIGR02252 DREG-2 REG-2-like, H 98.5 4.1E-07 8.9E-12 74.8 7.6 47 152-202 104-150 (203)
61 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.5 3.4E-07 7.4E-12 78.8 7.2 60 111-197 2-61 (249)
62 TIGR01487 SPP-like sucrose-pho 98.5 4E-07 8.6E-12 76.0 7.2 58 111-197 2-59 (215)
63 PRK13582 thrH phosphoserine ph 98.5 2.9E-07 6.2E-12 75.8 6.2 45 150-198 65-109 (205)
64 COG0647 NagD Predicted sugar p 98.5 4E-07 8.7E-12 79.7 6.8 62 108-196 6-68 (269)
65 PRK10513 sugar phosphate phosp 98.5 4.3E-07 9.4E-12 78.0 7.0 58 110-196 3-60 (270)
66 TIGR01482 SPP-subfamily Sucros 98.4 4.5E-07 9.9E-12 75.5 6.3 57 113-198 1-57 (225)
67 PRK00192 mannosyl-3-phosphogly 98.4 5.9E-07 1.3E-11 77.9 7.1 60 110-198 4-63 (273)
68 COG0561 Cof Predicted hydrolas 98.4 7.5E-07 1.6E-11 76.5 7.4 60 109-197 2-61 (264)
69 PF13419 HAD_2: Haloacid dehal 98.4 2.3E-07 5E-12 72.8 3.8 52 150-204 74-126 (176)
70 TIGR01509 HAD-SF-IA-v3 haloaci 98.4 9.5E-07 2.1E-11 70.7 7.5 45 152-200 84-128 (183)
71 PRK09449 dUMP phosphatase; Pro 98.4 1.2E-06 2.6E-11 73.1 8.4 48 151-202 93-140 (224)
72 TIGR02461 osmo_MPG_phos mannos 98.4 8.6E-07 1.9E-11 75.3 7.1 56 112-197 1-56 (225)
73 TIGR01261 hisB_Nterm histidino 98.4 1E-06 2.2E-11 71.4 7.1 77 111-203 2-90 (161)
74 PRK03669 mannosyl-3-phosphogly 98.4 8.3E-07 1.8E-11 76.9 6.9 59 109-196 6-64 (271)
75 PRK08942 D,D-heptose 1,7-bisph 98.4 1.1E-06 2.4E-11 71.6 7.3 76 110-203 3-90 (181)
76 PF08282 Hydrolase_3: haloacid 98.4 8.6E-07 1.9E-11 73.5 6.7 56 113-197 1-56 (254)
77 TIGR01489 DKMTPPase-SF 2,3-dik 98.4 2.2E-06 4.9E-11 69.0 8.7 46 151-199 70-115 (188)
78 TIGR01993 Pyr-5-nucltdase pyri 98.4 1.5E-06 3.2E-11 70.6 7.6 44 151-200 82-125 (184)
79 TIGR00213 GmhB_yaeD D,D-heptos 98.4 8.3E-07 1.8E-11 72.2 6.0 52 111-180 2-53 (176)
80 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 8.3E-07 1.8E-11 69.0 5.7 67 111-194 1-68 (128)
81 PRK09552 mtnX 2-hydroxy-3-keto 98.4 1.8E-06 3.9E-11 72.4 8.1 81 110-193 3-111 (219)
82 TIGR00099 Cof-subfamily Cof su 98.3 1.2E-06 2.6E-11 74.9 6.9 57 112-197 1-57 (256)
83 PTZ00174 phosphomannomutase; P 98.3 9E-07 2E-11 75.9 6.1 48 108-181 3-50 (247)
84 COG3700 AphA Acid phosphatase 98.3 8.1E-07 1.8E-11 73.4 5.4 91 107-197 60-159 (237)
85 TIGR01670 YrbI-phosphatas 3-de 98.3 3.8E-07 8.3E-12 73.0 3.3 70 110-198 1-70 (154)
86 TIGR02247 HAD-1A3-hyp Epoxide 98.3 3E-06 6.5E-11 70.2 8.4 47 151-198 92-138 (211)
87 TIGR01486 HAD-SF-IIB-MPGP mann 98.3 1.8E-06 4E-11 74.0 7.1 57 113-198 2-58 (256)
88 TIGR02463 MPGP_rel mannosyl-3- 98.3 1.5E-06 3.2E-11 72.7 6.3 55 113-196 2-56 (221)
89 PHA02597 30.2 hypothetical pro 98.3 3.4E-06 7.4E-11 69.2 8.1 71 110-181 2-101 (197)
90 TIGR02254 YjjG/YfnB HAD superf 98.3 4E-06 8.7E-11 69.4 8.4 49 151-203 95-143 (224)
91 KOG2914 Predicted haloacid-hal 98.2 3.1E-06 6.8E-11 72.2 7.2 82 108-190 8-129 (222)
92 PRK12702 mannosyl-3-phosphogly 98.2 2.8E-06 6.1E-11 75.2 7.2 59 110-197 1-59 (302)
93 PLN02887 hydrolase family prot 98.2 3E-06 6.5E-11 81.5 7.8 59 109-196 307-365 (580)
94 TIGR01685 MDP-1 magnesium-depe 98.2 1.1E-06 2.3E-11 72.4 4.2 80 110-196 2-86 (174)
95 PLN02919 haloacid dehalogenase 98.2 5.6E-06 1.2E-10 84.5 9.8 44 153-199 161-205 (1057)
96 PRK10563 6-phosphogluconate ph 98.2 7E-06 1.5E-10 68.4 8.8 47 151-203 86-133 (221)
97 PRK11590 hypothetical protein; 98.2 1.3E-05 2.8E-10 67.1 10.1 41 152-195 94-135 (211)
98 TIGR01488 HAD-SF-IB Haloacid D 98.2 1.2E-05 2.7E-10 64.2 9.5 46 150-198 70-115 (177)
99 PRK09456 ?-D-glucose-1-phospha 98.2 5.6E-06 1.2E-10 68.3 7.6 31 152-182 83-113 (199)
100 TIGR01460 HAD-SF-IIA Haloacid 98.2 4E-06 8.6E-11 71.6 6.5 58 113-197 1-59 (236)
101 PRK06769 hypothetical protein; 98.2 1.9E-06 4E-11 70.3 4.0 71 109-198 3-78 (173)
102 PRK10748 flavin mononucleotide 98.1 9E-06 2E-10 69.2 7.4 44 151-203 111-154 (238)
103 TIGR01456 CECR5 HAD-superfamil 98.1 6.7E-06 1.5E-10 73.4 6.6 58 112-196 2-64 (321)
104 COG0560 SerB Phosphoserine pho 98.1 2.3E-05 5E-10 66.3 9.3 44 152-198 76-119 (212)
105 TIGR01663 PNK-3'Pase polynucle 98.1 2E-05 4.4E-10 74.9 9.6 77 108-199 166-251 (526)
106 smart00577 CPDc catalytic doma 98.0 3.6E-06 7.8E-11 66.9 2.7 92 109-205 1-95 (148)
107 TIGR01484 HAD-SF-IIB HAD-super 98.0 1.3E-05 2.9E-10 65.9 6.2 47 113-184 2-48 (204)
108 PRK14502 bifunctional mannosyl 98.0 2.2E-05 4.7E-10 76.5 7.6 61 107-196 413-473 (694)
109 PRK11133 serB phosphoserine ph 97.9 4.5E-05 9.8E-10 68.4 8.7 45 150-197 178-222 (322)
110 PLN02423 phosphomannomutase 97.9 1.9E-05 4.2E-10 67.9 5.9 47 108-181 4-51 (245)
111 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.9 3.5E-05 7.6E-10 63.1 6.9 44 152-198 86-129 (202)
112 TIGR01668 YqeG_hyp_ppase HAD s 97.9 5.9E-05 1.3E-09 61.2 7.7 62 108-196 23-84 (170)
113 TIGR01485 SPP_plant-cyano sucr 97.9 3E-05 6.5E-10 66.3 6.1 62 111-198 2-63 (249)
114 PRK09484 3-deoxy-D-manno-octul 97.9 1.8E-05 3.8E-10 65.1 4.4 71 109-198 20-90 (183)
115 TIGR02137 HSK-PSP phosphoserin 97.8 8.8E-05 1.9E-09 62.2 8.5 44 151-198 66-109 (203)
116 PRK10187 trehalose-6-phosphate 97.8 3.7E-05 8E-10 66.9 5.5 62 109-194 13-75 (266)
117 PRK08238 hypothetical protein; 97.7 0.00011 2.4E-09 69.3 8.2 85 108-195 8-111 (479)
118 TIGR02726 phenyl_P_delta pheny 97.7 2.5E-05 5.5E-10 63.9 3.3 72 109-199 6-77 (169)
119 KOG2882 p-Nitrophenyl phosphat 97.7 7.1E-05 1.5E-09 66.2 6.3 63 108-197 20-82 (306)
120 TIGR03333 salvage_mtnX 2-hydro 97.7 0.00013 2.7E-09 61.1 7.3 41 151-194 68-108 (214)
121 TIGR02471 sucr_syn_bact_C sucr 97.7 5.8E-05 1.3E-09 63.8 5.2 56 112-198 1-56 (236)
122 PF08645 PNK3P: Polynucleotide 97.7 3.1E-05 6.7E-10 62.6 3.2 69 111-196 1-83 (159)
123 PF11019 DUF2608: Protein of u 97.7 0.00014 3E-09 63.1 7.3 88 109-196 19-124 (252)
124 COG1011 Predicted hydrolase (H 97.7 0.00016 3.4E-09 60.1 7.3 48 151-202 97-144 (229)
125 TIGR02250 FCP1_euk FCP1-like p 97.7 0.00019 4.1E-09 57.9 7.5 96 107-206 3-110 (156)
126 TIGR01545 YfhB_g-proteo haloac 97.6 0.00023 5E-09 59.9 8.1 41 152-195 93-134 (210)
127 TIGR01686 FkbH FkbH-like domai 97.6 0.00015 3.2E-09 64.7 7.0 73 109-199 2-78 (320)
128 PF06888 Put_Phosphatase: Puta 97.6 0.00031 6.8E-09 60.4 8.4 84 112-198 2-115 (234)
129 PF12689 Acid_PPase: Acid Phos 97.6 0.00014 3E-09 59.7 5.7 82 109-196 2-86 (169)
130 PRK05446 imidazole glycerol-ph 97.6 0.00022 4.8E-09 64.9 7.5 78 109-204 1-92 (354)
131 TIGR01493 HAD-SF-IA-v2 Haloaci 97.6 7.4E-05 1.6E-09 59.9 3.7 41 151-201 88-128 (175)
132 PLN03017 trehalose-phosphatase 97.5 0.00018 3.9E-09 65.6 6.4 56 107-184 108-163 (366)
133 KOG1615 Phosphoserine phosphat 97.5 0.00043 9.3E-09 58.1 7.7 86 109-197 15-129 (227)
134 COG2179 Predicted hydrolase of 97.5 0.00041 8.9E-09 56.7 7.0 62 107-196 25-86 (175)
135 PF03031 NIF: NLI interacting 97.4 0.00014 3.1E-09 57.8 3.7 86 111-205 1-86 (159)
136 TIGR02251 HIF-SF_euk Dullard-l 97.4 0.00039 8.5E-09 56.2 6.1 78 110-191 1-79 (162)
137 KOG2116 Protein involved in pl 97.4 0.00044 9.6E-09 66.6 7.0 71 110-195 530-600 (738)
138 COG1778 Low specificity phosph 97.4 0.00026 5.7E-09 57.3 4.6 71 108-197 6-76 (170)
139 PF12710 HAD: haloacid dehalog 97.4 0.00023 4.9E-09 57.4 4.3 40 156-198 92-131 (192)
140 PLN02205 alpha,alpha-trehalose 97.3 0.00021 4.5E-09 71.7 4.4 71 108-204 594-668 (854)
141 COG4996 Predicted phosphatase 97.3 0.00042 9.1E-09 54.8 4.9 92 111-209 1-94 (164)
142 COG4850 Uncharacterized conser 97.3 0.00061 1.3E-08 61.0 6.5 86 110-205 161-248 (373)
143 COG1877 OtsB Trehalose-6-phosp 97.2 0.00045 9.8E-09 60.5 4.8 75 107-205 15-92 (266)
144 PLN02811 hydrolase 97.2 0.0012 2.7E-08 55.2 7.0 50 151-202 76-125 (220)
145 PF05152 DUF705: Protein of un 97.2 0.0023 5E-08 56.4 8.6 72 108-205 120-191 (297)
146 PRK14501 putative bifunctional 97.1 0.00057 1.2E-08 67.4 5.2 63 108-194 490-553 (726)
147 PLN02151 trehalose-phosphatase 97.1 0.001 2.2E-08 60.5 6.3 56 107-184 95-150 (354)
148 TIGR00685 T6PP trehalose-phosp 97.1 0.00067 1.4E-08 58.0 4.9 51 109-180 2-53 (244)
149 TIGR01691 enolase-ppase 2,3-di 97.0 0.0027 5.8E-08 54.0 7.7 32 151-182 93-124 (220)
150 KOG3040 Predicted sugar phosph 97.0 0.0018 3.9E-08 55.0 6.3 63 108-197 5-67 (262)
151 KOG3120 Predicted haloacid deh 97.0 0.0032 6.9E-08 53.9 7.8 87 108-197 11-126 (256)
152 COG5083 SMP2 Uncharacterized p 97.0 0.0013 2.7E-08 61.2 5.7 76 108-198 373-451 (580)
153 COG0241 HisB Histidinol phosph 96.9 0.0015 3.3E-08 54.1 4.7 76 110-203 5-92 (181)
154 PLN02382 probable sucrose-phos 96.8 0.0046 1E-07 57.3 7.6 66 108-199 7-72 (413)
155 COG5663 Uncharacterized conser 96.7 0.0022 4.8E-08 52.6 4.6 91 112-205 8-122 (194)
156 PTZ00445 p36-lilke protein; Pr 96.7 0.0024 5.3E-08 54.2 4.8 91 72-181 10-103 (219)
157 PLN02580 trehalose-phosphatase 96.6 0.0039 8.4E-08 57.4 6.0 56 107-184 116-171 (384)
158 TIGR02245 HAD_IIID1 HAD-superf 96.5 0.0071 1.5E-07 50.7 6.4 66 107-195 18-83 (195)
159 COG3769 Predicted hydrolase (H 96.5 0.0031 6.8E-08 54.0 4.1 58 109-196 6-63 (274)
160 PF09419 PGP_phosphatase: Mito 96.4 0.011 2.4E-07 48.5 6.6 48 107-179 38-87 (168)
161 PF02358 Trehalose_PPase: Treh 96.2 0.0029 6.2E-08 53.7 2.1 48 114-182 1-49 (235)
162 PF05116 S6PP: Sucrose-6F-phos 96.1 0.0068 1.5E-07 52.2 4.2 65 110-203 2-66 (247)
163 TIGR01544 HAD-SF-IE haloacid d 95.8 0.03 6.5E-07 49.4 6.9 54 140-196 108-161 (277)
164 PLN03064 alpha,alpha-trehalose 95.6 0.013 2.8E-07 59.4 4.5 83 108-205 589-674 (934)
165 PLN03063 alpha,alpha-trehalose 95.4 0.028 6.2E-07 56.2 5.9 75 109-204 506-583 (797)
166 KOG3109 Haloacid dehalogenase- 95.2 0.07 1.5E-06 45.7 6.8 92 107-203 12-146 (244)
167 COG4359 Uncharacterized conser 95.0 0.11 2.4E-06 43.5 7.3 39 150-188 70-108 (220)
168 KOG3085 Predicted hydrolase (H 94.7 0.11 2.3E-06 45.0 6.6 43 152-198 112-154 (237)
169 KOG1618 Predicted phosphatase 94.6 0.091 2E-06 47.4 6.2 46 108-180 33-82 (389)
170 TIGR02244 HAD-IG-Ncltidse HAD 92.9 0.18 4E-06 45.8 5.1 39 152-193 183-221 (343)
171 PF00702 Hydrolase: haloacid d 92.6 0.13 2.7E-06 41.8 3.4 44 151-197 125-168 (215)
172 TIGR01512 ATPase-IB2_Cd heavy 92.4 0.21 4.5E-06 47.7 5.1 46 151-199 360-406 (536)
173 TIGR01525 ATPase-IB_hvy heavy 91.9 0.3 6.4E-06 46.8 5.5 45 151-198 382-427 (556)
174 COG3882 FkbH Predicted enzyme 90.0 1.2 2.5E-05 42.5 7.2 65 107-181 219-283 (574)
175 COG4502 5'(3')-deoxyribonucleo 89.7 0.94 2E-05 36.5 5.5 96 109-205 2-122 (180)
176 TIGR01511 ATPase-IB1_Cu copper 89.4 0.65 1.4E-05 44.7 5.3 43 151-196 403-445 (562)
177 KOG2134 Polynucleotide kinase 88.5 0.37 8.1E-06 44.4 2.8 59 108-180 73-131 (422)
178 PF00702 Hydrolase: haloacid d 87.5 0.34 7.4E-06 39.2 1.8 18 111-128 2-19 (215)
179 PLN02177 glycerol-3-phosphate 86.5 3.4 7.4E-05 39.4 8.1 36 154-196 111-147 (497)
180 KOG3189 Phosphomannomutase [Li 84.1 1.7 3.6E-05 37.1 4.3 46 109-181 10-55 (252)
181 PRK11033 zntA zinc/cadmium/mer 83.7 2.2 4.8E-05 42.5 5.7 44 151-197 566-609 (741)
182 PF06189 5-nucleotidase: 5'-nu 83.2 1.4 3E-05 38.7 3.5 125 72-203 76-220 (264)
183 PLN02499 glycerol-3-phosphate 83.2 2.3 5E-05 40.6 5.3 33 161-197 101-134 (498)
184 KOG1605 TFIIF-interacting CTD 82.8 0.19 4.1E-06 44.1 -1.9 84 107-195 86-173 (262)
185 TIGR01106 ATPase-IIC_X-K sodiu 82.3 2.2 4.8E-05 44.0 5.2 43 151-196 566-608 (997)
186 TIGR01522 ATPase-IIA2_Ca golgi 82.2 2.5 5.5E-05 42.9 5.6 45 151-198 526-570 (884)
187 TIGR01497 kdpB K+-transporting 79.5 2.9 6.3E-05 41.4 4.8 44 151-197 444-487 (675)
188 PRK10671 copA copper exporting 79.4 3.4 7.5E-05 41.6 5.4 44 151-197 648-691 (834)
189 COG4229 Predicted enolase-phos 77.7 5.9 0.00013 33.4 5.4 29 151-179 101-129 (229)
190 PF05761 5_nucleotid: 5' nucle 76.5 3 6.4E-05 39.3 3.7 40 154-193 184-223 (448)
191 TIGR01647 ATPase-IIIA_H plasma 76.1 4.1 8.8E-05 40.7 4.8 44 151-197 440-483 (755)
192 TIGR01116 ATPase-IIA1_Ca sarco 76.0 4.1 9E-05 41.6 4.9 44 151-197 535-578 (917)
193 KOG4549 Magnesium-dependent ph 73.5 3.5 7.6E-05 32.6 2.8 79 109-196 4-85 (144)
194 PRK01122 potassium-transportin 73.5 5.8 0.00013 39.3 5.0 44 151-197 443-486 (679)
195 PRK14010 potassium-transportin 73.5 5.3 0.00012 39.6 4.8 44 151-197 439-482 (673)
196 COG2217 ZntA Cation transport 72.0 6.2 0.00013 39.4 4.8 45 151-198 535-579 (713)
197 KOG1344 Predicted histone deac 71.1 14 0.00031 32.2 6.2 101 70-196 218-323 (324)
198 TIGR01524 ATPase-IIIB_Mg magne 68.6 7.8 0.00017 39.4 4.8 43 151-196 513-555 (867)
199 TIGR01517 ATPase-IIB_Ca plasma 68.2 8 0.00017 39.6 4.9 44 151-197 577-620 (941)
200 TIGR01523 ATPase-IID_K-Na pota 67.4 8 0.00017 40.2 4.7 43 151-196 644-686 (1053)
201 TIGR01657 P-ATPase-V P-type AT 64.4 9.7 0.00021 39.5 4.7 43 151-196 654-696 (1054)
202 PRK10517 magnesium-transportin 64.1 9.9 0.00021 38.9 4.6 43 151-196 548-590 (902)
203 TIGR02468 sucrsPsyn_pln sucros 63.1 27 0.00059 36.5 7.5 46 157-205 788-839 (1050)
204 PRK15122 magnesium-transportin 62.7 11 0.00024 38.5 4.7 43 151-196 548-590 (903)
205 cd06591 GH31_xylosidase_XylS X 62.2 36 0.00078 30.2 7.4 24 154-177 64-87 (319)
206 PF06437 ISN1: IMP-specific 5' 61.5 72 0.0016 29.7 9.2 48 109-180 146-193 (408)
207 COG2044 Predicted peroxiredoxi 60.3 15 0.00032 28.6 3.9 52 110-180 35-86 (120)
208 cd05008 SIS_GlmS_GlmD_1 SIS (S 59.9 12 0.00027 27.7 3.5 28 154-181 58-85 (126)
209 KOG2470 Similar to IMP-GMP spe 59.8 10 0.00022 35.1 3.3 31 154-184 241-271 (510)
210 PF09949 DUF2183: Uncharacteri 59.6 14 0.0003 27.6 3.6 35 171-206 1-35 (100)
211 TIGR01494 ATPase_P-type ATPase 59.6 15 0.00033 34.5 4.8 33 151-183 345-377 (499)
212 PF03345 DDOST_48kD: Oligosacc 59.3 16 0.00035 34.3 4.7 46 158-209 14-59 (423)
213 cd05014 SIS_Kpsf KpsF-like pro 58.6 14 0.0003 27.6 3.5 29 154-182 59-87 (128)
214 smart00851 MGS MGS-like domain 57.0 23 0.00049 25.2 4.3 31 158-196 2-32 (90)
215 KOG0202 Ca2+ transporting ATPa 56.5 24 0.00052 36.1 5.6 46 151-199 582-627 (972)
216 cd05013 SIS_RpiR RpiR-like pro 55.3 17 0.00037 26.9 3.6 26 156-181 74-99 (139)
217 PF01380 SIS: SIS domain SIS d 55.0 19 0.0004 26.7 3.7 27 155-181 66-92 (131)
218 COG1184 GCD2 Translation initi 54.6 27 0.00058 31.3 5.1 43 155-197 129-173 (301)
219 PF10307 DUF2410: Hypothetical 54.1 31 0.00067 29.0 5.2 50 156-206 57-108 (197)
220 cd06598 GH31_transferase_CtsZ 53.8 46 0.00099 29.5 6.6 43 153-195 67-109 (317)
221 TIGR03127 RuMP_HxlB 6-phospho 53.4 17 0.00038 29.0 3.5 29 154-182 84-112 (179)
222 cd05710 SIS_1 A subgroup of th 53.3 19 0.00041 27.1 3.5 29 154-182 59-87 (120)
223 cd06595 GH31_xylosidase_XylS-l 52.4 33 0.00071 30.1 5.4 24 154-177 72-95 (292)
224 PF04312 DUF460: Protein of un 51.1 20 0.00043 28.5 3.4 42 112-179 45-86 (138)
225 KOG2832 TFIIF-interacting CTD 50.9 31 0.00067 31.9 5.0 80 109-209 188-267 (393)
226 cd06416 GH25_Lys1-like Lys-1 i 50.3 35 0.00076 27.9 4.9 67 90-180 68-134 (196)
227 cd05017 SIS_PGI_PMI_1 The memb 49.9 24 0.00051 26.4 3.6 26 154-179 55-80 (119)
228 smart00266 CAD Domains present 49.0 12 0.00027 26.6 1.7 22 109-130 37-58 (74)
229 cd05006 SIS_GmhA Phosphoheptos 48.9 23 0.0005 28.3 3.6 29 153-181 112-140 (177)
230 PF13701 DDE_Tnp_1_4: Transpos 48.9 1.6E+02 0.0034 27.7 9.6 18 109-126 138-155 (448)
231 cd06539 CIDE_N_A CIDE_N domain 48.5 13 0.00028 26.7 1.8 22 109-130 39-60 (78)
232 TIGR00441 gmhA phosphoheptose 48.0 25 0.00054 27.7 3.6 28 154-181 91-118 (154)
233 COG0474 MgtA Cation transport 47.6 28 0.0006 35.8 4.7 43 151-197 545-588 (917)
234 cd00532 MGS-like MGS-like doma 47.3 36 0.00078 25.3 4.2 34 155-196 11-44 (112)
235 TIGR01652 ATPase-Plipid phosph 47.0 15 0.00033 38.1 2.8 31 151-181 629-659 (1057)
236 PF05822 UMPH-1: Pyrimidine 5' 46.9 21 0.00046 31.0 3.2 56 138-196 75-130 (246)
237 KOG1050 Trehalose-6-phosphate 46.9 27 0.00059 35.1 4.3 69 108-208 501-573 (732)
238 cd05005 SIS_PHI Hexulose-6-pho 46.3 26 0.00057 28.1 3.5 30 153-182 86-115 (179)
239 PRK13937 phosphoheptose isomer 46.3 26 0.00056 28.6 3.5 29 153-181 117-145 (188)
240 TIGR02886 spore_II_AA anti-sig 45.4 82 0.0018 22.6 5.8 40 155-199 57-96 (106)
241 cd06537 CIDE_N_B CIDE_N domain 45.3 15 0.00033 26.5 1.7 21 110-130 39-59 (81)
242 PRK00994 F420-dependent methyl 45.1 56 0.0012 28.6 5.4 49 151-205 69-117 (277)
243 COG0731 Fe-S oxidoreductases [ 45.0 38 0.00083 30.3 4.6 30 151-180 90-120 (296)
244 cd01615 CIDE_N CIDE_N domain, 43.8 19 0.00041 25.8 2.0 22 109-130 39-60 (78)
245 cd06538 CIDE_N_FSP27 CIDE_N do 42.6 17 0.00038 26.1 1.7 21 110-130 39-59 (79)
246 cd06536 CIDE_N_ICAD CIDE_N dom 42.4 21 0.00046 25.7 2.1 22 109-130 41-62 (80)
247 PF10137 TIR-like: Predicted n 41.7 30 0.00065 26.9 3.0 15 165-179 20-34 (125)
248 cd04795 SIS SIS domain. SIS (S 41.6 34 0.00075 23.3 3.1 22 155-176 60-81 (87)
249 PF01740 STAS: STAS domain; I 41.1 19 0.00042 26.4 1.9 58 109-198 47-104 (117)
250 cd06414 GH25_LytC-like The Lyt 41.0 56 0.0012 26.6 4.8 70 87-180 68-137 (191)
251 cd01423 MGS_CPS_I_III Methylgl 40.1 59 0.0013 24.2 4.4 34 155-196 12-45 (116)
252 PF13580 SIS_2: SIS domain; PD 39.7 32 0.00068 26.6 2.9 23 155-177 116-138 (138)
253 cd06525 GH25_Lyc-like Lyc mura 39.7 67 0.0014 26.0 5.0 62 91-180 66-128 (184)
254 TIGR02244 HAD-IG-Ncltidse HAD 39.6 16 0.00035 33.2 1.4 16 108-123 10-25 (343)
255 cd03012 TlpA_like_DipZ_like Tl 39.4 53 0.0011 24.4 4.1 43 154-196 41-86 (126)
256 COG4087 Soluble P-type ATPase 39.2 51 0.0011 26.4 4.0 40 153-196 30-69 (152)
257 PRK13938 phosphoheptose isomer 38.9 40 0.00087 28.1 3.6 29 153-181 124-152 (196)
258 PLN03190 aminophospholipid tra 37.6 51 0.0011 35.0 4.8 31 151-181 724-754 (1178)
259 PF03033 Glyco_transf_28: Glyc 37.4 53 0.0011 24.5 3.8 34 157-196 14-47 (139)
260 cd06592 GH31_glucosidase_KIAA1 37.2 1.3E+02 0.0029 26.4 6.9 24 154-177 68-91 (303)
261 PF01993 MTD: methylene-5,6,7, 37.2 72 0.0016 28.0 4.9 49 150-204 67-115 (276)
262 cd07041 STAS_RsbR_RsbS_like Su 37.1 1.2E+02 0.0026 21.8 5.6 57 109-197 40-96 (109)
263 PF05221 AdoHcyase: S-adenosyl 36.8 52 0.0011 29.0 4.1 46 153-198 51-96 (268)
264 PRK05476 S-adenosyl-L-homocyst 36.1 61 0.0013 30.4 4.7 46 153-198 56-101 (425)
265 PF00578 AhpC-TSA: AhpC/TSA fa 35.9 78 0.0017 22.9 4.5 39 155-196 45-83 (124)
266 cd01424 MGS_CPS_II Methylglyox 35.8 67 0.0014 23.6 4.1 33 156-196 13-45 (110)
267 PRK04531 acetylglutamate kinas 35.5 1.4E+02 0.0031 27.7 7.0 70 93-197 21-90 (398)
268 PRK10886 DnaA initiator-associ 35.5 49 0.0011 27.6 3.6 28 154-181 121-148 (196)
269 PF09198 T4-Gluco-transf: Bact 35.2 11 0.00024 22.8 -0.2 13 58-70 9-21 (38)
270 TIGR02109 PQQ_syn_pqqE coenzym 35.0 96 0.0021 27.6 5.7 42 154-196 66-107 (358)
271 PRK13936 phosphoheptose isomer 35.0 50 0.0011 27.2 3.6 29 153-181 122-150 (197)
272 PRK00414 gmhA phosphoheptose i 34.8 50 0.0011 27.2 3.5 28 154-181 123-150 (192)
273 COG0279 GmhA Phosphoheptose is 34.7 51 0.0011 27.2 3.5 32 153-184 120-151 (176)
274 cd07043 STAS_anti-anti-sigma_f 34.7 1.5E+02 0.0033 20.3 5.7 57 110-198 38-94 (99)
275 PF07511 DUF1525: Protein of u 34.5 69 0.0015 24.6 4.0 64 49-116 26-90 (114)
276 PRK13762 tRNA-modifying enzyme 34.1 45 0.00097 29.9 3.3 28 153-180 142-169 (322)
277 KOG0207 Cation transport ATPas 33.1 70 0.0015 33.0 4.7 32 151-182 721-752 (951)
278 COG2216 KdpB High-affinity K+ 32.7 74 0.0016 31.1 4.6 44 151-198 445-489 (681)
279 TIGR00221 nagA N-acetylglucosa 32.5 2E+02 0.0043 26.4 7.4 86 110-202 123-220 (380)
280 COG2344 AT-rich DNA-binding pr 32.3 1E+02 0.0022 26.2 4.9 44 153-197 130-173 (211)
281 TIGR00936 ahcY adenosylhomocys 32.3 83 0.0018 29.3 4.9 46 153-198 40-85 (406)
282 TIGR00377 ant_ant_sig anti-ant 32.2 1.6E+02 0.0035 20.9 5.6 58 109-198 42-99 (108)
283 cd06415 GH25_Cpl1-like Cpl-1 l 32.1 1.3E+02 0.0029 24.5 5.7 68 87-180 65-132 (196)
284 cd00401 AdoHcyase S-adenosyl-L 31.1 91 0.002 29.1 4.9 46 153-198 44-89 (413)
285 cd06844 STAS Sulphate Transpor 30.9 1.5E+02 0.0032 21.1 5.2 56 109-197 38-94 (100)
286 COG1501 Alpha-glucosidases, fa 30.7 1.2E+02 0.0025 30.8 5.9 43 153-195 318-360 (772)
287 cd03018 PRX_AhpE_like Peroxire 30.6 1E+02 0.0023 23.2 4.5 40 154-196 47-86 (149)
288 PRK13717 conjugal transfer pro 30.6 1.1E+02 0.0023 24.1 4.5 61 108-177 43-103 (128)
289 PRK11337 DNA-binding transcrip 30.5 61 0.0013 28.0 3.5 28 154-181 199-226 (292)
290 cd06600 GH31_MGAM-like This fa 30.4 1E+02 0.0022 27.3 5.1 23 154-176 62-84 (317)
291 KOG2501 Thioredoxin, nucleored 30.3 1.1E+02 0.0023 24.9 4.6 39 155-196 52-93 (157)
292 KOG3128 Uncharacterized conser 30.3 83 0.0018 27.9 4.2 45 137-181 122-166 (298)
293 PRK05301 pyrroloquinoline quin 30.0 1.3E+02 0.0029 27.0 5.8 42 154-196 75-116 (378)
294 PRK02947 hypothetical protein; 29.9 65 0.0014 27.6 3.6 27 154-180 118-144 (246)
295 PF06434 Aconitase_2_N: Aconit 29.5 67 0.0015 27.1 3.4 44 153-196 37-85 (204)
296 COG3603 Uncharacterized conser 29.2 1.1E+02 0.0023 24.0 4.2 42 155-196 76-125 (128)
297 PF00857 Isochorismatase: Isoc 29.0 65 0.0014 25.2 3.2 38 159-196 101-139 (174)
298 PRK15482 transcriptional regul 29.0 68 0.0015 27.7 3.6 30 153-182 193-222 (285)
299 PF00070 Pyr_redox: Pyridine n 29.0 1.9E+02 0.004 19.6 5.2 41 157-197 10-57 (80)
300 PRK11557 putative DNA-binding 28.8 63 0.0014 27.7 3.3 30 153-182 186-215 (278)
301 TIGR02495 NrdG2 anaerobic ribo 28.8 1.7E+02 0.0038 23.2 5.8 38 155-195 76-113 (191)
302 cd06522 GH25_AtlA-like AtlA is 28.7 1.6E+02 0.0035 24.0 5.6 63 88-179 69-133 (192)
303 KOG2961 Predicted hydrolase (H 28.7 79 0.0017 26.0 3.6 15 109-123 42-56 (190)
304 PF02254 TrkA_N: TrkA-N domain 28.1 1.7E+02 0.0038 21.0 5.2 17 188-204 53-69 (116)
305 PF13439 Glyco_transf_4: Glyco 28.1 78 0.0017 23.6 3.4 24 158-181 18-41 (177)
306 PRK00881 purH bifunctional pho 28.1 1.3E+02 0.0028 29.1 5.4 34 155-196 14-47 (513)
307 TIGR03757 conj_TIGR03757 integ 28.0 92 0.002 23.9 3.7 63 50-116 28-91 (113)
308 cd06524 GH25_YegX-like YegX is 27.9 1.4E+02 0.0031 24.2 5.1 64 91-180 70-134 (194)
309 cd06603 GH31_GANC_GANAB_alpha 27.0 1E+02 0.0022 27.6 4.4 24 154-177 62-85 (339)
310 PRK10892 D-arabinose 5-phospha 26.9 71 0.0015 28.1 3.4 30 153-182 105-134 (326)
311 PF12694 MoCo_carrier: Putativ 26.9 64 0.0014 25.9 2.7 44 153-196 74-117 (145)
312 PF02017 CIDE-N: CIDE-N domain 26.5 39 0.00084 24.2 1.3 39 87-130 22-60 (78)
313 cd03017 PRX_BCP Peroxiredoxin 26.5 1.4E+02 0.003 22.1 4.6 39 155-196 43-81 (140)
314 COG0809 QueA S-adenosylmethion 26.5 55 0.0012 29.9 2.6 22 155-176 185-206 (348)
315 PF07664 FeoB_C: Ferrous iron 26.4 1.3E+02 0.0029 19.4 3.8 15 27-41 28-42 (54)
316 cd06589 GH31 The enzymes of gl 26.4 1.6E+02 0.0035 25.2 5.5 26 154-179 64-89 (265)
317 TIGR03278 methan_mark_10 putat 26.3 1.5E+02 0.0032 27.6 5.5 43 154-196 87-130 (404)
318 TIGR00393 kpsF KpsF/GutQ famil 26.2 77 0.0017 26.8 3.4 29 154-182 59-87 (268)
319 smart00481 POLIIIAc DNA polyme 26.2 1.9E+02 0.0042 18.9 4.9 39 158-196 17-56 (67)
320 TIGR03590 PseG pseudaminic aci 26.1 1.2E+02 0.0026 26.2 4.6 37 157-196 19-55 (279)
321 cd06523 GH25_PlyB-like PlyB is 26.1 2.4E+02 0.0051 22.7 6.1 61 87-180 65-126 (177)
322 PF00072 Response_reg: Respons 26.1 1E+02 0.0023 21.4 3.6 41 159-205 59-101 (112)
323 TIGR00511 ribulose_e2b2 ribose 26.1 1.5E+02 0.0032 26.4 5.2 28 169-196 141-168 (301)
324 PRK11543 gutQ D-arabinose 5-ph 25.8 80 0.0017 27.6 3.5 29 153-181 100-128 (321)
325 PF01713 Smr: Smr domain; Int 25.7 2.3E+02 0.005 19.5 5.3 42 154-196 11-58 (83)
326 PRK10949 protease 4; Provision 25.3 6.6E+02 0.014 24.8 9.9 42 107-175 110-151 (618)
327 TIGR01452 PGP_euk phosphoglyco 25.1 73 0.0016 27.4 3.0 26 154-180 144-169 (279)
328 cd06533 Glyco_transf_WecG_TagA 25.0 1.6E+02 0.0034 23.7 4.8 36 157-193 34-69 (171)
329 PRK10658 putative alpha-glucos 25.0 2.2E+02 0.0049 28.2 6.7 25 154-178 323-347 (665)
330 KOG3111 D-ribulose-5-phosphate 24.9 2.1E+02 0.0045 24.4 5.5 82 109-191 30-133 (224)
331 PRK08535 translation initiatio 24.9 1.6E+02 0.0035 26.2 5.3 37 160-196 135-173 (310)
332 COG0602 NrdG Organic radical a 24.8 79 0.0017 26.6 3.1 30 153-182 82-112 (212)
333 PF04244 DPRP: Deoxyribodipyri 24.4 1.6E+02 0.0035 25.1 4.9 53 154-209 47-103 (224)
334 PRK00075 cbiD cobalt-precorrin 24.3 95 0.002 28.6 3.7 35 88-123 319-353 (361)
335 TIGR02826 RNR_activ_nrdG3 anae 24.1 87 0.0019 24.8 3.1 25 156-180 75-99 (147)
336 cd05007 SIS_Etherase N-acetylm 23.7 98 0.0021 26.7 3.6 29 154-182 130-158 (257)
337 TIGR03365 Bsubt_queE 7-cyano-7 23.5 77 0.0017 26.9 2.8 25 156-180 87-111 (238)
338 cd02968 SCO SCO (an acronym fo 23.5 1.8E+02 0.0038 21.6 4.6 43 154-196 41-87 (142)
339 cd00431 cysteine_hydrolases Cy 23.4 1.2E+02 0.0027 23.2 3.8 38 160-197 100-138 (161)
340 COG1335 PncA Amidases related 23.3 1.3E+02 0.0027 24.4 4.0 37 161-197 124-161 (205)
341 cd01453 vWA_transcription_fact 23.3 3.8E+02 0.0081 21.6 6.8 32 87-120 87-118 (183)
342 PF02142 MGS: MGS-like domain 23.2 79 0.0017 22.7 2.5 32 157-196 1-32 (95)
343 PRK08063 enoyl-(acyl carrier p 23.2 1.8E+02 0.0039 23.7 5.0 34 159-192 18-51 (250)
344 TIGR01459 HAD-SF-IIA-hyp4 HAD- 23.0 79 0.0017 26.5 2.8 26 155-181 140-165 (242)
345 cd01422 MGS Methylglyoxal synt 23.0 1.4E+02 0.0031 22.4 4.0 34 155-196 11-47 (115)
346 TIGR00524 eIF-2B_rel eIF-2B al 23.0 1.7E+02 0.0036 26.1 5.0 38 159-196 140-180 (303)
347 PLN02494 adenosylhomocysteinas 22.8 1.5E+02 0.0034 28.3 4.9 44 155-198 56-99 (477)
348 PRK11382 frlB fructoselysine-6 22.8 97 0.0021 27.7 3.5 27 155-181 105-131 (340)
349 PF03193 DUF258: Protein of un 22.7 1.6E+02 0.0034 23.9 4.3 31 160-190 3-33 (161)
350 COG1056 NadR Nicotinamide mono 22.7 3.8E+02 0.0083 22.0 6.7 56 153-210 14-81 (172)
351 PF13477 Glyco_trans_4_2: Glyc 22.5 1.1E+02 0.0024 22.5 3.3 25 157-181 12-36 (139)
352 PRK14129 heat shock protein Hs 22.4 83 0.0018 23.9 2.4 23 108-130 17-39 (105)
353 cd07901 Adenylation_DNA_ligase 22.4 2E+02 0.0044 23.6 5.1 21 110-130 117-140 (207)
354 cd06604 GH31_glucosidase_II_Ma 22.4 1.7E+02 0.0037 26.1 5.0 23 154-176 62-84 (339)
355 PRK08335 translation initiatio 22.2 2.1E+02 0.0045 25.3 5.3 39 158-196 122-162 (275)
356 TIGR00274 N-acetylmuramic acid 22.1 1.1E+02 0.0023 27.1 3.5 27 155-181 139-165 (291)
357 PRK09437 bcp thioredoxin-depen 22.0 2.2E+02 0.0047 21.7 5.0 41 155-199 50-90 (154)
358 cd06601 GH31_lyase_GLase GLase 21.9 2.1E+02 0.0045 25.8 5.4 24 153-176 61-84 (332)
359 PRK05441 murQ N-acetylmuramic 21.9 1.1E+02 0.0024 27.1 3.6 28 154-181 143-170 (299)
360 PF05240 APOBEC_C: APOBEC-like 21.8 1.3E+02 0.0027 20.2 3.0 24 156-179 2-25 (55)
361 PF04123 DUF373: Domain of unk 21.8 1.7E+02 0.0036 26.8 4.7 30 152-181 47-78 (344)
362 PF00106 adh_short: short chai 21.7 2E+02 0.0044 21.7 4.7 36 159-194 14-51 (167)
363 PRK11302 DNA-binding transcrip 21.6 1E+02 0.0023 26.2 3.3 25 153-177 186-210 (284)
364 TIGR01890 N-Ac-Glu-synth amino 21.5 4.3E+02 0.0094 24.3 7.6 69 91-197 4-72 (429)
365 PF08534 Redoxin: Redoxin; In 21.5 2E+02 0.0043 21.6 4.6 39 155-196 48-86 (146)
366 PF13911 AhpC-TSA_2: AhpC/TSA 21.4 2.5E+02 0.0053 20.4 5.0 39 160-203 4-42 (115)
367 COG1737 RpiR Transcriptional r 21.4 1.1E+02 0.0024 26.6 3.4 29 153-181 188-216 (281)
368 PF09587 PGA_cap: Bacterial ca 21.3 4E+02 0.0086 22.4 6.9 66 110-196 37-107 (250)
369 cd02072 Glm_B12_BD B12 binding 21.1 2E+02 0.0043 22.4 4.5 44 153-196 62-110 (128)
370 PF04343 DUF488: Protein of un 21.1 2.7E+02 0.0058 20.8 5.2 39 158-196 2-46 (122)
371 COG0794 GutQ Predicted sugar p 21.0 1.1E+02 0.0024 25.8 3.2 26 156-181 100-125 (202)
372 PF14336 DUF4392: Domain of un 21.0 1.8E+02 0.0039 25.7 4.7 42 153-196 60-101 (291)
373 cd01011 nicotinamidase Nicotin 21.0 1.4E+02 0.0031 24.3 3.9 38 159-196 127-165 (196)
374 cd01014 nicotinamidase_related 20.9 1.5E+02 0.0033 23.0 3.9 38 160-197 89-127 (155)
375 cd06417 GH25_LysA-like LysA is 20.8 2.2E+02 0.0048 23.1 5.0 61 91-180 63-124 (195)
376 PF05761 5_nucleotid: 5' nucle 20.7 60 0.0013 30.7 1.7 16 108-123 10-25 (448)
377 PF04007 DUF354: Protein of un 20.7 97 0.0021 28.0 3.0 36 157-196 15-50 (335)
378 cd04250 AAK_NAGK-C AAK_NAGK-C: 20.6 3.8E+02 0.0082 23.1 6.7 26 93-124 3-28 (279)
379 PF13651 EcoRI_methylase: Aden 20.5 6.6E+02 0.014 23.0 9.3 102 109-210 92-204 (336)
380 COG1609 PurR Transcriptional r 20.4 3.1E+02 0.0068 24.2 6.2 42 155-196 160-207 (333)
381 cd00338 Ser_Recombinase Serine 20.2 2.2E+02 0.0047 21.0 4.5 20 157-176 83-102 (137)
382 cd00340 GSH_Peroxidase Glutath 20.2 1.9E+02 0.0041 22.3 4.3 43 154-196 39-87 (152)
383 TIGR01917 gly_red_sel_B glycin 20.1 2E+02 0.0044 27.1 5.0 43 155-197 322-367 (431)
384 PRK05234 mgsA methylglyoxal sy 20.1 1.8E+02 0.0039 22.9 4.1 34 155-196 16-52 (142)
385 PF15240 Pro-rich: Proline-ric 20.0 69 0.0015 26.6 1.7 17 5-21 1-17 (179)
386 PF04015 DUF362: Domain of unk 20.0 1.9E+02 0.0041 23.5 4.5 40 158-198 25-65 (206)
387 smart00463 SMR Small MutS-rela 20.0 1.7E+02 0.0037 20.0 3.6 44 153-196 13-65 (80)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=5.6e-53 Score=358.99 Aligned_cols=166 Identities=48% Similarity=0.866 Sum_probs=160.9
Q ss_pred cCCCCcCCchhhhhhhccccCccccCCchhhHHHHhhccCccccccHHHHHHHHHHHHhhccccCCCCCceEEEecCCCC
Q 028215 42 RAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (212)
Q Consensus 42 ~~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTL 121 (212)
.+.+++||.||||+||+||+++|++||++|++||++||+|+||.+|+++|+++|..|++++.+. +|+++|||||||+|+
T Consensus 10 ~~~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~-~dg~~A~V~DIDET~ 88 (229)
T TIGR01675 10 LSIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALS-GDGMDAWIFDVDDTL 88 (229)
T ss_pred ccCCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEcccccc
Confidence 5567999999999999999999999999999999999999999999999999999999999888 899999999999999
Q ss_pred CCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeE
Q 028215 122 LSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (212)
Q Consensus 122 ldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~L 201 (212)
|||.||+..++||+++|+++.|++|+..+++|++|++++++++|+++|++|+|+|||++.+++.|.+||+++||++|++|
T Consensus 89 LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~L 168 (229)
T TIGR01675 89 LSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHL 168 (229)
T ss_pred ccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 028215 202 FLRYRNR 208 (212)
Q Consensus 202 ilr~~~~ 208 (212)
+||+.++
T Consensus 169 iLR~~~d 175 (229)
T TIGR01675 169 ILRGLED 175 (229)
T ss_pred eecCCCC
Confidence 9998544
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=5.9e-53 Score=364.97 Aligned_cols=164 Identities=41% Similarity=0.772 Sum_probs=157.2
Q ss_pred CCCCcCCchhhhhhhccccCccccCCchhhHHHHhhccCccccccHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCC
Q 028215 43 AGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLL 122 (212)
Q Consensus 43 ~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLl 122 (212)
..+.+||.|||++||+||+++|++||++|++||++||+||||++|++.|+++|+.|++++... +++|||||||||++
T Consensus 37 ~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~~~~~~---~~dA~V~DIDET~L 113 (275)
T TIGR01680 37 RDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDLEVH---EKDTFLFNIDGTAL 113 (275)
T ss_pred cCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCcCC---CCCEEEEECccccc
Confidence 467899999999999999999999999999999999999999999999999999999887653 58999999999999
Q ss_pred CChhhHhhhcCCCCCCCHHHHH-HHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeE
Q 028215 123 SNLPYYAAHGFGSEIFNEDAFD-EWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (212)
Q Consensus 123 dn~~~~~~~~~g~~~~~~~~~~-~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~L 201 (212)
||.||+..++||+++|+++.|+ +|+..+++|++||+++|+++++++|++|+|+|||++.++++|++||+++||++|++|
T Consensus 114 sN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~L 193 (275)
T TIGR01680 114 SNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKL 193 (275)
T ss_pred cCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCccee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCc
Q 028215 202 FLRYRNRY 209 (212)
Q Consensus 202 ilr~~~~~ 209 (212)
+||+++|+
T Consensus 194 iLR~~~D~ 201 (275)
T TIGR01680 194 ILKDPQDN 201 (275)
T ss_pred eecCCCCC
Confidence 99987654
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=1.8e-38 Score=270.79 Aligned_cols=162 Identities=44% Similarity=0.748 Sum_probs=141.8
Q ss_pred cCCCCcCCchhhhhhhccccCccccCCchhhHHHHhhccCccccccHHHHHHHHHHHHhhccccCCCCCceEEEecCCCC
Q 028215 42 RAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (212)
Q Consensus 42 ~~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTL 121 (212)
......+|.||+++||+|| .+|.+ ++|+.++.+ |+++||.+|+++++.+|+.|++...+. +++++|||||||||+
T Consensus 9 ~~~~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~-~~~~~avv~DIDeTv 83 (229)
T PF03767_consen 9 LSTAALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDE-ADKPPAVVFDIDETV 83 (229)
T ss_dssp ---------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHH-HTSEEEEEEESBTTT
T ss_pred hhHHHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhc-cCCCcEEEEECCccc
Confidence 4457889999999999999 99955 999999999 999999999999999999999998877 689999999999999
Q ss_pred CCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeE
Q 028215 122 LSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (212)
Q Consensus 122 ldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~L 201 (212)
|+|.+|+..+.+++..|+++.|++|+..+.++++||+++|+++++++|++|+|+|||++.+++.|++||+++||+.|++|
T Consensus 84 Lsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l 163 (229)
T PF03767_consen 84 LSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHL 163 (229)
T ss_dssp EEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCG
T ss_pred ccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchh
Confidence 99999998888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 028215 202 FLRYRNR 208 (212)
Q Consensus 202 ilr~~~~ 208 (212)
+||++++
T Consensus 164 ~lr~~~~ 170 (229)
T PF03767_consen 164 ILRPDKD 170 (229)
T ss_dssp EEEEESS
T ss_pred ccccccc
Confidence 9998775
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.90 E-value=2e-23 Score=181.65 Aligned_cols=135 Identities=26% Similarity=0.358 Sum_probs=120.6
Q ss_pred hHHHHhhccCccccccHHHHHHHHHHHHhhcc-ccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhc
Q 028215 72 VEFVQKYMTGEHYLSDSEIVSGYSLKHAKSAN-VSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLA 150 (212)
Q Consensus 72 ~~~v~~y~~~~~Y~~D~~~v~~~A~~y~~~~~-~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~ 150 (212)
..-+..|.+++.|+.....+.+.|..++.+.. .. .++++|||||||||+++|.||+..+.+++.+|+++.|++|+...
T Consensus 37 ~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~-~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~ 115 (266)
T TIGR01533 37 TMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKV-KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAA 115 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcC
Confidence 45667889999999999988888888875543 33 46789999999999999999998888888899999999999999
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC--CeEEeecCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW--KKLFLRYRN 207 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~--~~Lilr~~~ 207 (212)
.++++||+.+++++|+++|++++|+|||++..++.|.++|+++|++.+ +++++|++.
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~ 174 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK 174 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC
Confidence 999999999999999999999999999999999999999999999865 589999653
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=99.82 E-value=4.8e-20 Score=156.65 Aligned_cols=117 Identities=27% Similarity=0.431 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHHHhh-----ccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHH
Q 028215 87 DSEIVSGYSLKHAKS-----ANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTF 161 (212)
Q Consensus 87 D~~~v~~~A~~y~~~-----~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lel 161 (212)
+.+++.-|++.-++. ..+. .++++|||+|||||+|||+||.......+.+|+|+.|++|+....+.++||+.||
T Consensus 52 E~~AL~~Q~yn~Ak~~~d~~~k~~-k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eF 130 (274)
T COG2503 52 EYQALYLQAYNSAKIALDTQAKKK-KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEF 130 (274)
T ss_pred HHHHHHHHHhhhHHHHHHhhhccc-cCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHH
Confidence 355677777766633 3444 5778899999999999999998887777889999999999999999999999999
Q ss_pred HHHHHHCCCeEEEEcCCChhc-hHHHHHHHHHCCCCCC--CeEEee
Q 028215 162 YKELKQLGFKIFLLTGRNEFQ-RNTTEKNLLFAGYSDW--KKLFLR 204 (212)
Q Consensus 162 l~~Lk~~G~kI~~vTgR~~~~-~~~T~~nL~~~G~~~~--~~Lilr 204 (212)
+++.-++|.+|+|+|+|.... ...|+++|.+.|++.- ++++|+
T Consensus 131 l~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk 176 (274)
T COG2503 131 LNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK 176 (274)
T ss_pred HHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe
Confidence 999999999999999999876 8999999999999975 467765
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.64 E-value=1.2e-15 Score=130.98 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCceEEEecCCCCCCChhh--HhhhcCC--CCCC--CHHHHHHHHHh--cCCCCChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 109 GKDAWVFDIDETLLSNLPY--YAAHGFG--SEIF--NEDAFDEWVDL--AKAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~--~~~~~~g--~~~~--~~~~~~~wv~~--~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
++.+|+||||||++||+|+ +.++.|+ ...| +++.|+.|... ..+.|.||++++|++|+++|++|+++|||++
T Consensus 62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~ 141 (237)
T PRK11009 62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTA 141 (237)
T ss_pred CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3559999999999998885 4455564 3456 44567667664 3467788899999999999999999999998
Q ss_pred hchHHHHHHHHH-CCC--CCCCeEEeecC
Q 028215 181 FQRNTTEKNLLF-AGY--SDWKKLFLRYR 206 (212)
Q Consensus 181 ~~~~~T~~nL~~-~G~--~~~~~Lilr~~ 206 (212)
..++.|.++|.+ +|+ ..+..+++-++
T Consensus 142 ~k~~~t~~~Llk~~gip~~~~f~vil~gd 170 (237)
T PRK11009 142 TKTETVSKTLADDFHIPADNMNPVIFAGD 170 (237)
T ss_pred cccHHHHHHHHHHcCCCcccceeEEEcCC
Confidence 888889999986 999 45556666544
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.51 E-value=1.2e-13 Score=118.68 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCC---------HHHHHHHHHhcCC--CCChhHHHHHHHHHHCCCeEEEEcC
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFN---------EDAFDEWVDLAKA--PALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~---------~~~~~~wv~~~~~--~~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
++.+|+|||||||+||.|++ . +|...++ +..|+.|...... .+.+++.++|++++++|++++++||
T Consensus 62 ~p~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTn 138 (237)
T TIGR01672 62 PPIAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTG 138 (237)
T ss_pred CCeEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeC
Confidence 34499999999999999986 2 3322233 4678999887654 5555599999999999999999999
Q ss_pred CChhchHHHHHHHH-HCCCCCCCeEEeecC
Q 028215 178 RNEFQRNTTEKNLL-FAGYSDWKKLFLRYR 206 (212)
Q Consensus 178 R~~~~~~~T~~nL~-~~G~~~~~~Lilr~~ 206 (212)
|.+...+.+.++|. .+|++.+...++..+
T Consensus 139 r~~~k~~~~a~~ll~~lGi~~~f~~i~~~d 168 (237)
T TIGR01672 139 RTPGKTDTVSKTLAKNFHIPAMNPVIFAGD 168 (237)
T ss_pred CCCCcCHHHHHHHHHHhCCchheeEEECCC
Confidence 97654555666665 699998877776543
No 8
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.45 E-value=3.6e-13 Score=105.31 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=63.4
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchH------
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN------ 184 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~------ 184 (212)
++|+|||||||+.+.. .+|. ..++.+++.+.+++++++|++|+++|||+...+.
T Consensus 2 K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i 61 (126)
T TIGR01689 2 KRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKI 61 (126)
T ss_pred CEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhcccccc
Confidence 6899999999986410 0111 1368899999999999999999999999987766
Q ss_pred ------HHHHHHHHCCCCCCCeEEeecC
Q 028215 185 ------TTEKNLLFAGYSDWKKLFLRYR 206 (212)
Q Consensus 185 ------~T~~nL~~~G~~~~~~Lilr~~ 206 (212)
.|.+||.++|++ |++|+||.+
T Consensus 62 ~~~~~~~t~~wL~k~~ip-Yd~l~~~kp 88 (126)
T TIGR01689 62 NIHTLPIIILWLNQHNVP-YDEIYVGKP 88 (126)
T ss_pred chhhHHHHHHHHHHcCCC-CceEEeCCC
Confidence 999999999999 899999985
No 9
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.02 E-value=1.2e-09 Score=88.23 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=59.4
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
.|++||||||+++... .+.. ++ .++....|++.+++++++++|++++++|||+..+...|.++|.
T Consensus 1 iVisDIDGTL~~sd~~--~~~~---~~----------~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 1 IVISDIDGTITKSDVL--GHVV---PI----------IGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CEEEecCCCCcccccc--cccc---cc----------cccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4899999999986310 0000 00 1123567999999999999999999999999999888999998
Q ss_pred H-----CCCCCCCeEEeecCC
Q 028215 192 F-----AGYSDWKKLFLRYRN 207 (212)
Q Consensus 192 ~-----~G~~~~~~Lilr~~~ 207 (212)
. ++++. ..+++++..
T Consensus 66 ~~~~~~~~lp~-g~li~~~g~ 85 (157)
T smart00775 66 QIKQDGHNLPH-GPVLLSPDR 85 (157)
T ss_pred HhhhccccCCC-ceEEEcCCc
Confidence 8 45763 467777653
No 10
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.96 E-value=4.7e-09 Score=87.35 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCceEEEecCCCCCCChhhHhh------hcCCCCC--------------------CCHHHHHHHHH----------hcCC
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA------HGFGSEI--------------------FNEDAFDEWVD----------LAKA 152 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~------~~~g~~~--------------------~~~~~~~~wv~----------~~~~ 152 (212)
..++|+||+||||+|+.+.+.. ..++... ++++.+.+... ....
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHHDELV 81 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3679999999999999886543 1222111 11222222111 1245
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
+++||+.++++.|+++|++++++||.++. .+...|+..|+..|...++
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~---~~~~~l~~~gl~~~f~~i~ 129 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRD---TVEMGLKLTGLDEFFDVVI 129 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCChhceeEEE
Confidence 78999999999999999999999999865 3446788899998765554
No 11
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.94 E-value=3e-09 Score=90.12 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=63.8
Q ss_pred CceEEEecCCCCCCChhhHhhh------cCCCC---------------------------C--CCHHHHHHHHH------
Q 028215 110 KDAWVFDIDETLLSNLPYYAAH------GFGSE---------------------------I--FNEDAFDEWVD------ 148 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~------~~g~~---------------------------~--~~~~~~~~wv~------ 148 (212)
.+|+|||+||||+||.+.+.+. .+|.. . .....-..+..
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE 81 (221)
T ss_pred CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence 5799999999999999977651 23311 0 01111111111
Q ss_pred hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEE
Q 028215 149 LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 149 ~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
....+++||+.++++.|+++|++++++|++++. .+...|...|+..|...+
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~---~~~~~L~~~gl~~~f~~~ 132 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSPRR---AAERVLARLGLLDYFDVI 132 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCChHH---HHHHHHHHccChhhcchh
Confidence 245799999999999999999999999999875 455788889988775443
No 12
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.93 E-value=7e-09 Score=87.74 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=64.0
Q ss_pred CCceEEEecCCCCCCChhhHhh------hcCCCCCCC------------------------H----HHHHHHHH------
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA------HGFGSEIFN------------------------E----DAFDEWVD------ 148 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~------~~~g~~~~~------------------------~----~~~~~wv~------ 148 (212)
.+++||||+||||+|+.+.+.. ..+|..+.+ . +....+..
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEALI 90 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999886654 123321111 0 00111111
Q ss_pred hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEee
Q 028215 149 LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 149 ~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr 204 (212)
....+++||+.+++++|+++|++++++||.+.. .....|+++|+..+...+.-
T Consensus 91 ~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~---~~~~~l~~~~l~~~f~~i~~ 143 (229)
T PRK13226 91 GTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEY---LARLILPQLGWEQRCAVLIG 143 (229)
T ss_pred hhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHH---HHHHHHHHcCchhcccEEEe
Confidence 124688999999999999999999999999874 33467888898876555543
No 13
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.93 E-value=7.1e-09 Score=90.67 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=64.7
Q ss_pred CCCceEEEecCCCCCCChhhHhh------hcCCCCC----------------------CCHHHHHHHH-------H--hc
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAA------HGFGSEI----------------------FNEDAFDEWV-------D--LA 150 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~------~~~g~~~----------------------~~~~~~~~wv-------~--~~ 150 (212)
+..++++||+||||+|+.+.+.. ..+|..+ ++++.+.+.. . ..
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999999876553 1233211 1111111111 1 13
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..+++||+.++|+.|+++|++++++||..+. .+...|+..|+..|...+.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~---~~~~~L~~~gl~~~F~~vi 189 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQ---NIEAFLQRQGLRSLFSVVQ 189 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCChhheEEEE
Confidence 4578999999999999999999999999875 4447889999987765543
No 14
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.91 E-value=2.9e-09 Score=79.94 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=49.6
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
++||+||||+.. ..++||+.+++++|+++|.+++|+||++...++...+.|++
T Consensus 1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 689999999963 26899999999999999999999999998888888899999
Q ss_pred CCCCC
Q 028215 193 AGYSD 197 (212)
Q Consensus 193 ~G~~~ 197 (212)
.|++.
T Consensus 54 ~Gi~~ 58 (101)
T PF13344_consen 54 LGIPV 58 (101)
T ss_dssp TTTT-
T ss_pred cCcCC
Confidence 99984
No 15
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=8.3e-09 Score=88.47 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=42.6
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
...+++||+.++|+.|+++|++++++||.++.. +...|+++|+..|...++
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~---~~~~l~~~gl~~~Fd~iv 155 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN---AELMISLLGLSDFFQAVI 155 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH---HHHHHHHcCChhhCcEEE
Confidence 357889999999999999999999999998754 447888899988765443
No 16
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.89 E-value=4.7e-09 Score=84.95 Aligned_cols=78 Identities=28% Similarity=0.293 Sum_probs=59.4
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
.||+|||||+..|.- .. +.+. ..++....||+.+++++++++||++.++|+|+..+...|..||.
T Consensus 1 VVvsDIDGTiT~SD~-~G-~i~~-------------~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV-LG-HILP-------------ILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred CEEEeccCCcCccch-hh-hhhh-------------ccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 489999999997731 00 0000 01223578999999999999999999999999999999999999
Q ss_pred HC-----CCCCCCeEEeec
Q 028215 192 FA-----GYSDWKKLFLRY 205 (212)
Q Consensus 192 ~~-----G~~~~~~Lilr~ 205 (212)
.. ++|. .-+++.+
T Consensus 66 ~~~q~~~~lP~-Gpv~~sP 83 (157)
T PF08235_consen 66 QHQQQGHNLPD-GPVLLSP 83 (157)
T ss_pred HHHhCCccCCC-CCEEECC
Confidence 99 8884 3445543
No 17
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.87 E-value=1.4e-08 Score=85.51 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=65.7
Q ss_pred CCceEEEecCCCCCCChhhHhh------hcCCCCCCCH----------------------------HHHHHHHH------
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA------HGFGSEIFNE----------------------------DAFDEWVD------ 148 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~------~~~g~~~~~~----------------------------~~~~~wv~------ 148 (212)
..++|+||+||||+|+.+.+.. ..++..+.++ +.+..|..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (220)
T COG0546 3 MIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTAY 82 (220)
T ss_pred CCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 3679999999999999886554 1222211111 12222211
Q ss_pred hcC--CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEee
Q 028215 149 LAK--APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 149 ~~~--~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr 204 (212)
... ..++||+.++|..|+++|++++++||+++.. +...|+++|+..|...+.-
T Consensus 83 ~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~---~~~~l~~~gl~~~F~~i~g 137 (220)
T COG0546 83 AELLESRLFPGVKELLAALKSAGYKLGIVTNKPERE---LDILLKALGLADYFDVIVG 137 (220)
T ss_pred HhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHH---HHHHHHHhCCccccceEEc
Confidence 112 4799999999999999999999999999864 4467888999998766654
No 18
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.86 E-value=1.3e-08 Score=83.96 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=41.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..++.||+.++++.|+++|++++++||.+.. .....|++.|+..+...+.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~ 132 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTP---LARPLLELLGLAKYFSVLI 132 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCcHhhCcEEE
Confidence 3678999999999999999999999998764 3447888899987654443
No 19
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.85 E-value=7.2e-09 Score=87.72 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=39.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
...++||+.++++.|+++|++++++||.+.... ...|+.+|+..|...+.
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~---~~~l~~~~l~~~fd~iv 140 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAHPHNL---AVKLEHTGLDAHLDLLL 140 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHH---HHHHHHCCcHHHCCEEE
Confidence 368899999999999999999999999876533 34577788877654333
No 20
>PRK11587 putative phosphatase; Provisional
Probab=98.85 E-value=2e-08 Score=84.15 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=60.8
Q ss_pred CCceEEEecCCCCCCChhhHhh------hcCCC-----------C-----------CCCH----HHHHHHH---H--hcC
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA------HGFGS-----------E-----------IFNE----DAFDEWV---D--LAK 151 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~------~~~g~-----------~-----------~~~~----~~~~~wv---~--~~~ 151 (212)
+.++||||+||||+|+.+.+.. ..+|. . ..+. +.+.++. . ...
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLEQIEATDTEG 81 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhcC
Confidence 3579999999999999876542 11221 0 0111 1222211 1 235
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEE
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
.+++||+.++|+.|+++|++++++||.+.. .+...+...|+..++.++
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~---~~~~~l~~~~l~~~~~i~ 129 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVP---VASARHKAAGLPAPEVFV 129 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCch---HHHHHHHhcCCCCccEEE
Confidence 688999999999999999999999998764 234567778886444444
No 21
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.85 E-value=3.7e-08 Score=86.12 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=76.6
Q ss_pred CchhhHHHHhhccCccccccHHHHHHHHHHHH---hh----ccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCH
Q 028215 68 PSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHA---KS----ANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNE 140 (212)
Q Consensus 68 P~~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~---~~----~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~ 140 (212)
+++|...+... ++... ..+.+..+...+. .. +.+. ..++++++||+|||+.++.. ..+|
T Consensus 113 ~e~~~~R~~~R--~~~~~-~~~~i~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~D~dgtl~~~~~--------~~~~-- 178 (300)
T PHA02530 113 VEELVKRNRKR--GERAV-PEDVLRSMFKQMKEYRGLVWPVYTAD-PGLPKAVIFDIDGTLAKMGG--------RSPY-- 178 (300)
T ss_pred HHHHHHHHHcc--CcCCC-CHHHHHHHHHHHHHhcCCCCceeccC-CCCCCEEEEECCCcCcCCCC--------CCcc--
Confidence 45677666664 22222 3344443333332 11 1222 34578999999999998743 1223
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCC
Q 028215 141 DAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAG 194 (212)
Q Consensus 141 ~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G 194 (212)
+|......+++|++.++++.|+++|++++++|||++..+..+.++|...|
T Consensus 179 ----~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~ 228 (300)
T PHA02530 179 ----DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD 228 (300)
T ss_pred ----chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcC
Confidence 35556677999999999999999999999999999999999999998887
No 22
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.81 E-value=2.3e-08 Score=86.90 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..+++||+.++|+.|+++|++++++||++... +...|+.+|+..|...++
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~---~~~~l~~~gl~~~Fd~ii 156 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRY---LERAIEAVGMEGFFSVVL 156 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH---HHHHHHHcCCHhhCcEEE
Confidence 56789999999999999999999999998753 446788889987654444
No 23
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.79 E-value=3.3e-08 Score=81.74 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=39.8
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCe
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK 200 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~ 200 (212)
...++.||+.+++++|+++|++++++||++... +...|+..|+..+..
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~---~~~~l~~~~l~~~f~ 119 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPR---ARSLLEALGLLPLFD 119 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHHHcCChhhee
Confidence 356889999999999999999999999987653 446788889976643
No 24
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.79 E-value=4.8e-08 Score=85.09 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=63.5
Q ss_pred CCCCceEEEecCCCCCCChhhHhh------hcCCCCC------------------------------CCHHHHH------
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAA------HGFGSEI------------------------------FNEDAFD------ 144 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~------~~~g~~~------------------------------~~~~~~~------ 144 (212)
+.-+++||||+||||+|+.+.+.. ..+|... .+++.+.
T Consensus 10 ~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (272)
T PRK13223 10 GRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALF 89 (272)
T ss_pred CccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHH
Confidence 356889999999999999876553 1122110 1111121
Q ss_pred -HHHHh--cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 145 -EWVDL--AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 145 -~wv~~--~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
++... ...+++||+.++++.|+++|++++++||.++. .....|.+.|+..|...+.
T Consensus 90 ~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~---~~~~~l~~~~i~~~f~~i~ 148 (272)
T PRK13223 90 MEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPER---FVAPLLDQMKIGRYFRWII 148 (272)
T ss_pred HHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHH---HHHHHHHHcCcHhhCeEEE
Confidence 11111 23578999999999999999999999998875 3346777888877655443
No 25
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.79 E-value=2.8e-08 Score=90.81 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=65.0
Q ss_pred CCCCceEEEecCCCCCCChh-hHhh------hcCCCC-----------------------C--CCHHHHHHHHH------
Q 028215 107 GDGKDAWVFDIDETLLSNLP-YYAA------HGFGSE-----------------------I--FNEDAFDEWVD------ 148 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~-~~~~------~~~g~~-----------------------~--~~~~~~~~wv~------ 148 (212)
+.+.++||||+||||+|+.+ .+.. ..+|.. + .++..+.++..
T Consensus 128 ~~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y 207 (381)
T PLN02575 128 GCGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIY 207 (381)
T ss_pred cCCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 56889999999999999887 3321 112211 0 01111221211
Q ss_pred ----hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 149 ----LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 149 ----~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
.....++||+.++|+.|+++|++++++||++.. .+...|+++|+..|...+.
T Consensus 208 ~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~---~~~~~L~~lgL~~yFd~Iv 263 (381)
T PLN02575 208 QALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRK---TLENAIGSIGIRGFFSVIV 263 (381)
T ss_pred HHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCCHHHceEEE
Confidence 134678999999999999999999999999875 4446788899988765554
No 26
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.77 E-value=4.9e-08 Score=78.75 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=38.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..++.||+.++++.|+++|++++++||+ . .....|+..|+..|...+.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~----~~~~~l~~~~l~~~f~~v~ 133 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-K----NADRILAKLGLTDYFDAIV 133 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-h----hHHHHHHHcChHHHCCEee
Confidence 4689999999999999999999999998 2 2346788889877654443
No 27
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.77 E-value=3.1e-08 Score=82.53 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=38.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC--CCCe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS--DWKK 200 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~--~~~~ 200 (212)
..++.||+.++++.|+++|++++++||++..... ..|+++|+. .|..
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~---~~l~~~~l~~~~~f~ 133 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAE---RLLEKLGWTVGDDVD 133 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHH---HHHHHhhhhhhccCC
Confidence 3589999999999999999999999999876544 577778886 5543
No 28
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.77 E-value=7.1e-08 Score=80.21 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=41.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
...+.||+.++++.|+++|++++++||..+... ...++++|+..+...++
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~---~~~l~~~~l~~~f~~~~ 140 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFV---APLLEALGIADYFSVVI 140 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHH---HHHHHHcCCccCccEEE
Confidence 467999999999999999999999999987533 36788889987655554
No 29
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.73 E-value=6.9e-08 Score=82.50 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=38.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..+++||+.++|++|+++|++++++||++..... ..|+++|+..|
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~---~~l~~~gl~~~ 141 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMD---VVAPEAALQGY 141 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHH---HHHHHHHhcCC
Confidence 4689999999999999999999999999876443 56777787766
No 30
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.73 E-value=4.3e-08 Score=86.59 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCC-hhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPAL-PASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~-pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
-++.|+||+||||++... +..+. ||+.++|++|+++|++++++||+++... .
T Consensus 125 ~~kvIvFDLDgTLi~~~~------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v---~ 177 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEE------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHV---V 177 (301)
T ss_pred cceEEEEecCCCCcCCCC------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHH---H
Confidence 477999999999997621 12234 9999999999999999999999987644 3
Q ss_pred HHHHHCCCCCCCeEEee
Q 028215 188 KNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 188 ~nL~~~G~~~~~~Lilr 204 (212)
+.|++.|+..|...+.-
T Consensus 178 ~~L~~lGLd~YFdvIIs 194 (301)
T TIGR01684 178 ESMRKVKLDRYFDIIIS 194 (301)
T ss_pred HHHHHcCCCcccCEEEE
Confidence 78999999988655554
No 31
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.73 E-value=5.5e-08 Score=80.10 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
.+.+++.++|+.|+++|++++++||+++. .+...|+..|+..|...+.
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~---~~~~~l~~~gl~~~f~~~~ 153 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRK---DAAKFLTTHGLEILFPVQI 153 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHH---HHHHHHHHcCchhhCCEEE
Confidence 44556699999999999999999999875 3447888999987654443
No 32
>PLN02645 phosphoglycolate phosphatase
Probab=98.73 E-value=2.6e-08 Score=88.42 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
+..++++|||||||++. ..++||+.+++++|+++|++++|+|||+...+....
T Consensus 26 ~~~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~ 78 (311)
T PLN02645 26 DSVETFIFDCDGVIWKG---------------------------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYG 78 (311)
T ss_pred HhCCEEEEeCcCCeEeC---------------------------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence 35789999999999974 147899999999999999999999999988777778
Q ss_pred HHHHHCCCCCC
Q 028215 188 KNLLFAGYSDW 198 (212)
Q Consensus 188 ~nL~~~G~~~~ 198 (212)
+.|++.|++..
T Consensus 79 ~~l~~lGi~~~ 89 (311)
T PLN02645 79 KKFESLGLNVT 89 (311)
T ss_pred HHHHHCCCCCC
Confidence 88999999754
No 33
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.71 E-value=5.8e-08 Score=80.71 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=39.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK 200 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~ 200 (212)
..++.||+.++|++|+++|++++++||.+... ....|++.|+..|..
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~---~~~~l~~~~l~~~f~ 138 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVK---QWEKLERLGVRDFFD 138 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHhCChHHhcc
Confidence 35889999999999999999999999997643 345788899987643
No 34
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.71 E-value=1.2e-07 Score=79.34 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=41.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..+++||+.++++.|+++|++++++||.... .+...++..|+..|...+.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~ 139 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLH---MLEAVLTMFDLRDYFDALA 139 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHH---HHHHHHHhCcchhcccEEE
Confidence 4689999999999999999999999998765 3446788899988765554
No 35
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.70 E-value=1.2e-07 Score=76.46 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
.+++||+.++|+.|+++|++++++|++... ...|++.|+..+...++
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~-----~~~l~~~~l~~~f~~~~ 132 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKNA-----PTVLEKLGLIDYFDAIV 132 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCccH-----HHHHHhcCcHhhCcEEE
Confidence 478999999999999999999999987532 24688889887654443
No 36
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.68 E-value=1.4e-07 Score=77.52 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK 200 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~ 200 (212)
..++.||+.+++++|+++|++++++||.+... ....|++.|+..+..
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~---~~~~l~~~gl~~~fd 136 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAM---LKSLVKHAGLDDPFD 136 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHCCChhhhh
Confidence 46789999999999999999999999988753 336778889876543
No 37
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.68 E-value=3.3e-08 Score=76.27 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=50.7
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhc-----hHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-----RNT 185 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~-----~~~ 185 (212)
++++||+||||.++.++.. .| ....+.|++.+++++|+++|++++++||++... .+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~------------~~------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~ 62 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVD------------DE------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR 62 (132)
T ss_pred CEEEEeCCCceecCCCCCC------------CH------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH
Confidence 5899999999997522110 11 113789999999999999999999999998322 234
Q ss_pred HHHHHHHCCCC
Q 028215 186 TEKNLLFAGYS 196 (212)
Q Consensus 186 T~~nL~~~G~~ 196 (212)
..+.++..|+.
T Consensus 63 ~~~~l~~~~l~ 73 (132)
T TIGR01662 63 VARRLEELGVP 73 (132)
T ss_pred HHHHHHHCCCC
Confidence 55678888887
No 38
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.67 E-value=3.7e-08 Score=81.26 Aligned_cols=91 Identities=19% Similarity=0.340 Sum_probs=59.8
Q ss_pred EEEecCCCCCCChhhHhh---hcCCCCC-CCH------HHHHHH--------------HHh----cCCCCChhHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAA---HGFGSEI-FNE------DAFDEW--------------VDL----AKAPALPASLTFYKE 164 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~---~~~g~~~-~~~------~~~~~w--------------v~~----~~~~~~pg~lell~~ 164 (212)
|.+||||||.|..+.+.. ..|+..+ .+. ..+..| ... ...+|+||+.|.+++
T Consensus 5 I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~~ 84 (191)
T PF06941_consen 5 IAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEALKK 84 (191)
T ss_dssp EEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHHHHH
T ss_pred EEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHHHHH
Confidence 899999999998765443 2344320 110 112222 111 357999999999999
Q ss_pred HHHCCCeEEEEcCCChh----chHHHHHHHHHC--CCCCCCeEEee
Q 028215 165 LKQLGFKIFLLTGRNEF----QRNTTEKNLLFA--GYSDWKKLFLR 204 (212)
Q Consensus 165 Lk~~G~kI~~vTgR~~~----~~~~T~~nL~~~--G~~~~~~Lilr 204 (212)
|.+.|+.++++|+|+.. ..+.|.+||+++ +++ ++++++-
T Consensus 85 L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~ 129 (191)
T PF06941_consen 85 LRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFT 129 (191)
T ss_dssp HHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEE
T ss_pred HHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEe
Confidence 99999999999999876 467899999998 444 6677764
No 39
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.67 E-value=6.7e-08 Score=89.97 Aligned_cols=50 Identities=10% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..+++||+.++|++|+++|++++++||++... +...|+.+|+..|...++
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~---~~~~l~~~~l~~~f~~i~ 377 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEY---LRAIVSYYDLDQWVTETF 377 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHHHCCcHhhcceeE
Confidence 46889999999999999999999999998754 446788899987754444
No 40
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.66 E-value=5.7e-08 Score=72.73 Aligned_cols=66 Identities=32% Similarity=0.389 Sum_probs=52.4
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
+++||+||||....++... .....+.|++.+++++|+++|++++++||+... ....+++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~---~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKSRR---EVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHH---HHHHHHH
Confidence 4799999999987553322 234588999999999999999999999999854 4557888
Q ss_pred HCCCCCC
Q 028215 192 FAGYSDW 198 (212)
Q Consensus 192 ~~G~~~~ 198 (212)
..|+..+
T Consensus 60 ~~~~~~~ 66 (139)
T cd01427 60 ELGLDDY 66 (139)
T ss_pred HcCCchh
Confidence 8887543
No 41
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.64 E-value=6.3e-08 Score=83.76 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=53.2
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
++++||+||||++... ..-.++|++.++++.|+++|++++|+|||+...++...+.|
T Consensus 2 k~i~~D~DGtl~~~~~-----------------------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDA-----------------------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCC-----------------------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 5899999999996410 00128999999999999999999999999988777788899
Q ss_pred HHCCCC
Q 028215 191 LFAGYS 196 (212)
Q Consensus 191 ~~~G~~ 196 (212)
++.|++
T Consensus 59 ~~~g~~ 64 (257)
T TIGR01458 59 QRLGFD 64 (257)
T ss_pred HHcCCC
Confidence 999987
No 42
>PRK10444 UMP phosphatase; Provisional
Probab=98.64 E-value=7e-08 Score=83.32 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=54.1
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.++||+||||++. ..++|++.++++.|+++|.+++++|||+...+....+.
T Consensus 1 ~~~v~~DlDGtL~~~---------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~ 53 (248)
T PRK10444 1 IKNVICDIDGVLMHD---------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANR 53 (248)
T ss_pred CcEEEEeCCCceEeC---------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 368999999999975 15799999999999999999999999998888888899
Q ss_pred HHHCCCC
Q 028215 190 LLFAGYS 196 (212)
Q Consensus 190 L~~~G~~ 196 (212)
|.+.|++
T Consensus 54 l~~~G~~ 60 (248)
T PRK10444 54 FATAGVD 60 (248)
T ss_pred HHHcCCC
Confidence 9999996
No 43
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.63 E-value=7.8e-08 Score=83.87 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=53.4
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.++|+|||||||++. ..++||+.+++++|+++|++++++|||+...+......
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~ 54 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALK 54 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 578999999999864 15789999999999999999999999987777777788
Q ss_pred HHHCCCCC
Q 028215 190 LLFAGYSD 197 (212)
Q Consensus 190 L~~~G~~~ 197 (212)
|+++|+..
T Consensus 55 l~~~G~~~ 62 (279)
T TIGR01452 55 FARLGFNG 62 (279)
T ss_pred HHHcCCCC
Confidence 99999874
No 44
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.61 E-value=8.1e-08 Score=76.06 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=52.1
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhc--------
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-------- 182 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~-------- 182 (212)
++++||+||||.++...+ | ...|.+| .+.||+.+++++|+++|++++++||.++..
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~~------~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~ 64 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDDW------QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEA 64 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHHe------EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHH
Confidence 479999999999875311 1 1124333 689999999999999999999999987411
Q ss_pred ----hHHHHHHHHHCCCC
Q 028215 183 ----RNTTEKNLLFAGYS 196 (212)
Q Consensus 183 ----~~~T~~nL~~~G~~ 196 (212)
...+...|++.|+.
T Consensus 65 ~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 65 FRAPNGRVLELLRQLGVA 82 (147)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 13455678888887
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.60 E-value=1.7e-07 Score=77.99 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=57.4
Q ss_pred CCceEEEecCCCCCCChhhHhhh-cCCCC-------------CCCH----------------HHHHHHHHhcCCCCChhH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAH-GFGSE-------------IFNE----------------DAFDEWVDLAKAPALPAS 158 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~-~~g~~-------------~~~~----------------~~~~~wv~~~~~~~~pg~ 158 (212)
.+++++||+||||+++..+..-. .+|.. ..+. +.+.++. ...++.||+
T Consensus 13 ~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 90 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVR--ENLPLTEGA 90 (219)
T ss_pred cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHH--hcCCcCCCH
Confidence 47799999999999986643311 12210 0110 1111111 346789999
Q ss_pred HHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 159 lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
.++++.|+++|++++++||..... ....+++.|+..+
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~~---~~~~l~~~~i~~~ 127 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDLF---AEHVKDKLGLDAA 127 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHH---HHHHHHHcCCCce
Confidence 999999999999999999987643 3356777888764
No 46
>PLN02954 phosphoserine phosphatase
Probab=98.59 E-value=3.4e-07 Score=76.45 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=59.0
Q ss_pred CCCceEEEecCCCCCCChhhHhh-hcCCC---------------CCCC-------------HHHHHHHHHhcCCCCChhH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAA-HGFGS---------------EIFN-------------EDAFDEWVDLAKAPALPAS 158 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~-~~~g~---------------~~~~-------------~~~~~~wv~~~~~~~~pg~ 158 (212)
..+++|+||+||||+++.....- ..+|. .++. .+.+.++.......+.||+
T Consensus 10 ~~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~ 89 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGI 89 (224)
T ss_pred ccCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccH
Confidence 35889999999999997553221 11221 0110 1223333333345689999
Q ss_pred HHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 159 lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.++++.|+++|++++++||..+.. +...|+.+|++
T Consensus 90 ~e~l~~l~~~g~~~~IvS~~~~~~---i~~~l~~~gi~ 124 (224)
T PLN02954 90 PELVKKLRARGTDVYLVSGGFRQM---IAPVAAILGIP 124 (224)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHH---HHHHHHHhCCC
Confidence 999999999999999999998754 44677788886
No 47
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.57 E-value=1.5e-07 Score=78.86 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=47.6
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++||||||++.. ....|.+.+.+++|+++|++++++|||+..... ..
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~---~~ 53 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNVLCFAR---AA 53 (230)
T ss_pred eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCchHHHH---HH
Confidence 4789999999999752 135678899999999999999999999976433 45
Q ss_pred HHHCCCCCC
Q 028215 190 LLFAGYSDW 198 (212)
Q Consensus 190 L~~~G~~~~ 198 (212)
++..|++.+
T Consensus 54 ~~~l~~~~~ 62 (230)
T PRK01158 54 AKLIGTSGP 62 (230)
T ss_pred HHHhCCCCc
Confidence 566777654
No 48
>PLN02940 riboflavin kinase
Probab=98.57 E-value=3e-07 Score=84.00 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=62.1
Q ss_pred CCCceEEEecCCCCCCChhhHhh------hcCCCC---------------------------CCCHHH----HHHHHH--
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAA------HGFGSE---------------------------IFNEDA----FDEWVD-- 148 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~------~~~g~~---------------------------~~~~~~----~~~wv~-- 148 (212)
+..++|+||+||||+|+.+.+.. ..+|.. +.+.+. +.+...
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQ 88 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 45889999999999999886553 122210 000111 111111
Q ss_pred hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH-HCCCCCCCeEEe
Q 028215 149 LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL-FAGYSDWKKLFL 203 (212)
Q Consensus 149 ~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~-~~G~~~~~~Lil 203 (212)
.....++||+.+++++|+++|++++++||.++.. +...|. ..|+..|...++
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~---~~~~l~~~~gl~~~Fd~ii 141 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRAN---IEAKISCHQGWKESFSVIV 141 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH---HHHHHHhccChHhhCCEEE
Confidence 1346789999999999999999999999998653 335665 578877655544
No 49
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.57 E-value=4.8e-07 Score=79.46 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
.+++||+.++|++|+++|++++++||.+.....
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~ 175 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVS 175 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence 489999999999999999999999998775444
No 50
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.54 E-value=3.2e-07 Score=81.20 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=54.7
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCC-ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPA-LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~-~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
-++.++|||||||+.... +..+ -|++.++|++|+++|++++++|+.++... .
T Consensus 127 ~~~~i~~D~D~TL~~~~~------------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v---~ 179 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEE------------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHV---V 179 (303)
T ss_pred eccEEEEecCCCccCCCC------------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHH---H
Confidence 478999999999997521 1223 49999999999999999999998876533 5
Q ss_pred HHHHHCCCCCCCeEEee
Q 028215 188 KNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 188 ~nL~~~G~~~~~~Lilr 204 (212)
..|.++|+..+...+.-
T Consensus 180 ~~Le~lgL~~yFDvII~ 196 (303)
T PHA03398 180 HSLKETKLEGYFDIIIC 196 (303)
T ss_pred HHHHHcCCCccccEEEE
Confidence 78999999988655543
No 51
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.54 E-value=2e-07 Score=79.84 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=47.6
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++||||||+++. ....|.+.+.+++++++|++++++|||+... +...
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~---~~~~ 53 (272)
T PRK10530 3 YRVIALDLDGTLLTPK--------------------------KTILPESLEALARAREAGYKVIIVTGRHHVA---IHPF 53 (272)
T ss_pred ccEEEEeCCCceECCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHH
Confidence 5799999999999751 1456788999999999999999999999753 3356
Q ss_pred HHHCCCCC
Q 028215 190 LLFAGYSD 197 (212)
Q Consensus 190 L~~~G~~~ 197 (212)
+++.|+..
T Consensus 54 ~~~l~~~~ 61 (272)
T PRK10530 54 YQALALDT 61 (272)
T ss_pred HHhcCCCC
Confidence 67777764
No 52
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.53 E-value=3.5e-07 Score=78.05 Aligned_cols=67 Identities=10% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
+..++++||+|||+++. ..++||+.+++++|+++|++++++||.++. .....
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~ 57 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLH 57 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHH
Confidence 45789999999999964 267999999999999999999999998764 22234
Q ss_pred HHHHHCCCCC-CCeEE
Q 028215 188 KNLLFAGYSD-WKKLF 202 (212)
Q Consensus 188 ~nL~~~G~~~-~~~Li 202 (212)
+.|++.|++. +...+
T Consensus 58 ~~L~~~gl~~~~~~~I 73 (242)
T TIGR01459 58 KTLKSLGINADLPEMI 73 (242)
T ss_pred HHHHHCCCCccccceE
Confidence 6789999986 54333
No 53
>PRK10976 putative hydrolase; Provisional
Probab=98.53 E-value=2.3e-07 Score=79.66 Aligned_cols=60 Identities=22% Similarity=0.158 Sum_probs=47.8
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++||||||+++. ...-|.+.+.+++++++|++++++|||+.... ...
T Consensus 2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~---~~~ 52 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRHHVDV---GQI 52 (266)
T ss_pred ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCChHHH---HHH
Confidence 4789999999999751 14567889999999999999999999997633 345
Q ss_pred HHHCCCCCC
Q 028215 190 LLFAGYSDW 198 (212)
Q Consensus 190 L~~~G~~~~ 198 (212)
++..|+..+
T Consensus 53 ~~~l~~~~~ 61 (266)
T PRK10976 53 RDNLEIKSY 61 (266)
T ss_pred HHhcCCCCe
Confidence 667777653
No 54
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.53 E-value=6.8e-07 Score=72.43 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCCceEEEecCCCCCCChhhHhh------hcCCCC---------------------------CCCHHHHHH----HHH--
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAA------HGFGSE---------------------------IFNEDAFDE----WVD-- 148 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~------~~~g~~---------------------------~~~~~~~~~----wv~-- 148 (212)
++.++|+||+||||+|+.+.+.. ..+|.. ..+.+.+.. ...
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVKSM 82 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999876543 122211 001111111 111
Q ss_pred -hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 149 -LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 149 -~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
....+++|+ .+++..|+++ ++++++||.++.... ..|+++|+..|...+.
T Consensus 83 ~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~---~~l~~~~l~~~fd~i~ 133 (188)
T PRK10725 83 LLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAE---ALLAHLGLRRYFDAVV 133 (188)
T ss_pred HhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHH---HHHHhCCcHhHceEEE
Confidence 134467786 6999999876 899999998875433 6889999988755444
No 55
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.52 E-value=3e-07 Score=75.00 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=37.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..++.||+.++++.|+++|++++++||+..... ...++.+|+..+
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~---~~~l~~~g~~~~ 122 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLA---KKVAEKLNPDYV 122 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHH---HHHHHHhCCCeE
Confidence 568899999999999999999999999987544 466777787654
No 56
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.52 E-value=2.7e-07 Score=79.65 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=48.6
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++||||||+++. ....+.+.+.+++|+++|++++++|||+... ....
T Consensus 2 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~ 52 (272)
T PRK15126 2 ARLAAFDMDGTLLMPD--------------------------HHLGEKTLSTLARLRERDITLTFATGRHVLE---MQHI 52 (272)
T ss_pred ccEEEEeCCCcCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH---HHHH
Confidence 5789999999999751 1466788999999999999999999999753 3356
Q ss_pred HHHCCCCCC
Q 028215 190 LLFAGYSDW 198 (212)
Q Consensus 190 L~~~G~~~~ 198 (212)
+++.|+..+
T Consensus 53 ~~~l~~~~~ 61 (272)
T PRK15126 53 LGALSLDAY 61 (272)
T ss_pred HHHcCCCCc
Confidence 777787754
No 57
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.51 E-value=9.1e-07 Score=76.41 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=36.2
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
...++||+.++|+.|+++|++++++||.++.... ..|+.+|+.++
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~---~~l~~~~l~~~ 143 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMD---VVVPLAAAQGY 143 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHH---HHHHHHhhcCC
Confidence 4688999999999999999999999999886433 55666665544
No 58
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.51 E-value=3.6e-07 Score=71.85 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=48.4
Q ss_pred eEEEecCCCCCCChhhHhh------hcCCC----------CCCC-----HHHHHHHHH-hcCCCCChhHHHHHHHHHHCC
Q 028215 112 AWVFDIDETLLSNLPYYAA------HGFGS----------EIFN-----EDAFDEWVD-LAKAPALPASLTFYKELKQLG 169 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~------~~~g~----------~~~~-----~~~~~~wv~-~~~~~~~pg~lell~~Lk~~G 169 (212)
+++||+||||+|+.+.+.. ..++. .+.. ...|.+... .......||+.++++.|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 5899999999999765332 11221 0100 012222221 134567899999999999999
Q ss_pred CeEEEEcCCChhchH
Q 028215 170 FKIFLLTGRNEFQRN 184 (212)
Q Consensus 170 ~kI~~vTgR~~~~~~ 184 (212)
++++++||++.....
T Consensus 81 ~~~~i~T~~~~~~~~ 95 (154)
T TIGR01549 81 IKLGIISNGSLRAQK 95 (154)
T ss_pred CeEEEEeCCchHHHH
Confidence 999999999876544
No 59
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.50 E-value=5.8e-07 Score=73.10 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=53.6
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhch-----
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQR----- 183 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~----- 183 (212)
..+.++||+||||+.+... .. .+.+++.| ..+.||+.++|+.|+++|++++++||.+...+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~---~~---~~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~ 77 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSG---KV---FPTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSA 77 (166)
T ss_pred cCcEEEEeCCCceEecCCC---Cc---ccCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccH
Confidence 3578999999999975320 00 01234444 13689999999999999999999999876311
Q ss_pred ----HHHHHHHHHCCCCC
Q 028215 184 ----NTTEKNLLFAGYSD 197 (212)
Q Consensus 184 ----~~T~~nL~~~G~~~ 197 (212)
..+...|+.+|++.
T Consensus 78 ~~~~~~i~~~l~~~gl~~ 95 (166)
T TIGR01664 78 ESFKNKIEAFLEKLKVPI 95 (166)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 23456789999863
No 60
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.50 E-value=4.1e-07 Score=74.84 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEE
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
..++||+.+++++|+++|++++++||.+.. ....|++.|+..+...+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~----~~~~l~~~~l~~~fd~i 150 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR----LRGLLEALGLLEYFDFV 150 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh----HHHHHHHCCcHHhcceE
Confidence 367999999999999999999999997653 24578888987654333
No 61
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.49 E-value=3.4e-07 Score=78.77 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=50.3
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
+.++|||||||++. ..++|++.+++++|+++|++++|+||++....+...+.|
T Consensus 2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 58999999999974 146789999999999999999999986654555667889
Q ss_pred HHCCCCC
Q 028215 191 LFAGYSD 197 (212)
Q Consensus 191 ~~~G~~~ 197 (212)
++.|++.
T Consensus 55 ~~~g~~~ 61 (249)
T TIGR01457 55 ASFDIPA 61 (249)
T ss_pred HHcCCCC
Confidence 9999875
No 62
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.48 E-value=4e-07 Score=75.96 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=46.0
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
+.|++||||||+++. ....|.+.+.+++|+++|++++++|||+..... ..+
T Consensus 2 k~v~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~---~~~ 52 (215)
T TIGR01487 2 KLVAIDIDGTLTEPN--------------------------RMISERAIEAIRKAEKKGIPVSLVTGNTVPFAR---ALA 52 (215)
T ss_pred cEEEEecCCCcCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCcchhHH---HHH
Confidence 689999999999751 146678899999999999999999999976433 345
Q ss_pred HHCCCCC
Q 028215 191 LFAGYSD 197 (212)
Q Consensus 191 ~~~G~~~ 197 (212)
+..++..
T Consensus 53 ~~l~~~~ 59 (215)
T TIGR01487 53 VLIGTSG 59 (215)
T ss_pred HHhCCCC
Confidence 5666663
No 63
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.48 E-value=2.9e-07 Score=75.79 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=38.0
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
...++.||+.++++.|+++ ++++++|+..... +...|+++|++.+
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~---~~~~l~~~gl~~~ 109 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEF---AGPLMRQLGWPTL 109 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH---HHHHHHHcCCchh
Confidence 4567899999999999999 9999999998863 4468888898764
No 64
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.45 E-value=4e-07 Score=79.70 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=54.3
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
+..++++||+||||.+- ..++||+.+++++|+++|.+++|+||++...++...
T Consensus 6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~ 58 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVA 58 (269)
T ss_pred hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 46789999999999953 278999999999999999999999999998888788
Q ss_pred HHHHH-CCCC
Q 028215 188 KNLLF-AGYS 196 (212)
Q Consensus 188 ~nL~~-~G~~ 196 (212)
+.|.. .|.+
T Consensus 59 ~~L~~~~~~~ 68 (269)
T COG0647 59 ARLSSLGGVD 68 (269)
T ss_pred HHHHhhcCCC
Confidence 88988 5553
No 65
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.45 E-value=4.3e-07 Score=77.99 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=46.6
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++||||||+++. ...-|.+.+.+++|+++|++++++|||+.... ...
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~---~~~ 53 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRPYAGV---HRY 53 (270)
T ss_pred eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCChHHH---HHH
Confidence 5789999999999751 14567889999999999999999999997643 345
Q ss_pred HHHCCCC
Q 028215 190 LLFAGYS 196 (212)
Q Consensus 190 L~~~G~~ 196 (212)
++..|+.
T Consensus 54 ~~~l~~~ 60 (270)
T PRK10513 54 LKELHME 60 (270)
T ss_pred HHHhCCC
Confidence 6666764
No 66
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.43 E-value=4.5e-07 Score=75.52 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=44.3
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
++|||||||+++.. ...|.+.+.+++|+++|++++++|||+..... +-++.
T Consensus 1 i~~DlDGTLl~~~~--------------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~---~~~~~ 51 (225)
T TIGR01482 1 IASDIDGTLTDPNR--------------------------AINESALEAIRKAESVGIPVVLVTGNSVQFAR---ALAKL 51 (225)
T ss_pred CeEeccCccCCCCc--------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHH---HHHHH
Confidence 58999999998621 35577889999999999999999999986544 45566
Q ss_pred CCCCCC
Q 028215 193 AGYSDW 198 (212)
Q Consensus 193 ~G~~~~ 198 (212)
.|++.+
T Consensus 52 l~~~~~ 57 (225)
T TIGR01482 52 IGTPDP 57 (225)
T ss_pred hCCCCe
Confidence 676543
No 67
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.42 E-value=5.9e-07 Score=77.89 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=48.4
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++||||||+++. ....+++.+.+++|+++|++++++|||+... ....
T Consensus 4 ~kli~~DlDGTLl~~~--------------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~---~~~~ 54 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------------------------TYSYEPAKPALKALKEKGIPVIPCTSKTAAE---VEVL 54 (273)
T ss_pred ceEEEEcCcccCcCCC--------------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHH
Confidence 6799999999999741 1356789999999999999999999998754 3356
Q ss_pred HHHCCCCCC
Q 028215 190 LLFAGYSDW 198 (212)
Q Consensus 190 L~~~G~~~~ 198 (212)
+++.|+..+
T Consensus 55 ~~~l~l~~~ 63 (273)
T PRK00192 55 RKELGLEDP 63 (273)
T ss_pred HHHcCCCCC
Confidence 777787654
No 68
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.41 E-value=7.5e-07 Score=76.47 Aligned_cols=60 Identities=27% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
.++.++|||||||++.. ....+.+.+.+++++++|++++++|||+-.. ...
T Consensus 2 ~~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~---~~~ 52 (264)
T COG0561 2 MIKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRPLPD---VLS 52 (264)
T ss_pred CeeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCChHH---HHH
Confidence 36799999999999862 1477889999999999999999999999753 345
Q ss_pred HHHHCCCCC
Q 028215 189 NLLFAGYSD 197 (212)
Q Consensus 189 nL~~~G~~~ 197 (212)
.++..|+..
T Consensus 53 ~~~~l~~~~ 61 (264)
T COG0561 53 ILEELGLDG 61 (264)
T ss_pred HHHHcCCCc
Confidence 666667764
No 69
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.41 E-value=2.3e-07 Score=72.78 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=42.4
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC-CeEEee
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW-KKLFLR 204 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~-~~Lilr 204 (212)
...++.||+.++++.|+++|++++++|+.+.. .....|++.|+..+ +.++..
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~---~~~~~l~~~~~~~~f~~i~~~ 126 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRE---RIERVLERLGLDDYFDEIISS 126 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHH---HHHHHHHHTTHGGGCSEEEEG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcc---ccccccccccccccccccccc
Confidence 56799999999999999999999999999764 34478888888865 455544
No 70
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.41 E-value=9.5e-07 Score=70.72 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=36.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCe
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK 200 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~ 200 (212)
.++.||+.++++.|+++|++++++||.+... . ..+.+.|+..+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~---~~~~~~~l~~~f~ 128 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-A---VLVQELGLRDLFD 128 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-H---HHHHhcCCHHHCC
Confidence 6889999999999999999999999998754 2 3334478876543
No 71
>PRK09449 dUMP phosphatase; Provisional
Probab=98.41 E-value=1.2e-06 Score=73.10 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=38.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEE
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
..+++||+.++++.|+ +|++++++||.+.. .+...|++.|+..|...+
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~---~~~~~l~~~~l~~~fd~v 140 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTE---LQQVRLERTGLRDYFDLL 140 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHH---HHHHHHHhCChHHHcCEE
Confidence 3578999999999999 68999999998764 344678888987764333
No 72
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.39 E-value=8.6e-07 Score=75.29 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=45.1
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
.|+|||||||++.. ...|++.+.+++|+++|++++++|||+... ....++
T Consensus 1 li~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~---~~~~~~ 50 (225)
T TIGR02461 1 VIFTDLDGTLLPPG---------------------------YEPGPAREALEELKDLGFPIVFVSSKTRAE---QEYYRE 50 (225)
T ss_pred CEEEeCCCCCcCCC---------------------------CCchHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHH
Confidence 37899999999741 245678999999999999999999999764 335677
Q ss_pred HCCCCC
Q 028215 192 FAGYSD 197 (212)
Q Consensus 192 ~~G~~~ 197 (212)
+.|+..
T Consensus 51 ~lg~~~ 56 (225)
T TIGR02461 51 ELGVEP 56 (225)
T ss_pred HcCCCC
Confidence 788754
No 73
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.38 E-value=1e-06 Score=71.38 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=54.5
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh---------
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF--------- 181 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~--------- 181 (212)
++++||.||||..+.+. .|.... ....+++||+.++|++|+++|++++++||.+..
T Consensus 2 ~~~~~d~dg~l~~~~~~---------~~~~~~------~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~ 66 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS---------DFQVDA------LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD 66 (161)
T ss_pred CEEEEeCCCCccccCCC---------ccccCC------HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence 68999999999986331 110000 012378999999999999999999999997421
Q ss_pred ---chHHHHHHHHHCCCCCCCeEEe
Q 028215 182 ---QRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 182 ---~~~~T~~nL~~~G~~~~~~Lil 203 (212)
....+.+.|..+|+. ++..+.
T Consensus 67 ~~~~~~~~~~~l~~~gl~-fd~ii~ 90 (161)
T TIGR01261 67 FDGPHNLMLQIFRSQGII-FDDVLI 90 (161)
T ss_pred HHHHHHHHHHHHHHCCCc-eeEEEE
Confidence 123455668899998 666655
No 74
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.38 E-value=8.3e-07 Score=76.89 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
.++.|++||||||++... ...+.+.+.+++|+++|++++++|||+..... .
T Consensus 6 ~~~lI~~DlDGTLL~~~~--------------------------~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~---~ 56 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHT--------------------------YDWQPAAPWLTRLREAQVPVILCSSKTAAEML---P 56 (271)
T ss_pred CCeEEEEeCccCCcCCCC--------------------------cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHH---H
Confidence 478999999999997511 23467889999999999999999999976443 4
Q ss_pred HHHHCCCC
Q 028215 189 NLLFAGYS 196 (212)
Q Consensus 189 nL~~~G~~ 196 (212)
.++..|+.
T Consensus 57 ~~~~l~~~ 64 (271)
T PRK03669 57 LQQTLGLQ 64 (271)
T ss_pred HHHHhCCC
Confidence 56666774
No 75
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.38 E-value=1.1e-06 Score=71.63 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=52.7
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhc-------
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ------- 182 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~------- 182 (212)
.|+++||.||||..+...+.. .+.. ..++||+.+++++|+++|++++++||.+...
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~-----------~~~~------~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~ 65 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVK-----------SPDE------WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEA 65 (181)
T ss_pred ccEEEEECCCCcccCCccccC-----------CHHH------eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHH
Confidence 689999999998766422211 1222 2789999999999999999999999986310
Q ss_pred -----hHHHHHHHHHCCCCCCCeEEe
Q 028215 183 -----RNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 183 -----~~~T~~nL~~~G~~~~~~Lil 203 (212)
.+.....|++.|+. ++..+.
T Consensus 66 ~~~~~~~~~~~~l~~~g~~-f~~i~~ 90 (181)
T PRK08942 66 QLNALHEKMDWSLADRGGR-LDGIYY 90 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEE
Confidence 12233456677874 555554
No 76
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.37 E-value=8.6e-07 Score=73.54 Aligned_cols=56 Identities=30% Similarity=0.397 Sum_probs=45.3
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
|++||||||+++. ..+-|.+++.++.|+++|++++++|||+... ....+..
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~---~~~~~~~ 51 (254)
T PF08282_consen 1 IFSDLDGTLLNSD--------------------------GKISPETIEALKELQEKGIKLVIATGRSYSS---IKRLLKE 51 (254)
T ss_dssp EEEECCTTTCSTT--------------------------SSSCHHHHHHHHHHHHTTCEEEEECSSTHHH---HHHHHHH
T ss_pred cEEEECCceecCC--------------------------CeeCHHHHHHHHhhcccceEEEEEccCcccc---ccccccc
Confidence 6899999999741 1466899999999999999999999999764 3456666
Q ss_pred CCCCC
Q 028215 193 AGYSD 197 (212)
Q Consensus 193 ~G~~~ 197 (212)
.++..
T Consensus 52 ~~~~~ 56 (254)
T PF08282_consen 52 LGIDD 56 (254)
T ss_dssp TTHCS
T ss_pred ccchh
Confidence 77763
No 77
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.36 E-value=2.2e-06 Score=68.96 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=38.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK 199 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~ 199 (212)
..++.||+.++++.|+++|++++++|+......+ ..++..|+..+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~---~~l~~~~l~~~f 115 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFID---PVLEGIGEKDVF 115 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHH---HHHHHcCChhhe
Confidence 4689999999999999999999999999875433 567778887654
No 78
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.36 E-value=1.5e-06 Score=70.62 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK 200 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~ 200 (212)
..++.||+.++|+.|+ ++++++||.+... ....|++.|+..|..
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~---~~~~l~~~gl~~~fd 125 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAH---ARRALNRLGIEDCFD 125 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHH---HHHHHHHcCcHhhhC
Confidence 3568999999999997 5799999998753 447788889987643
No 79
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.36 E-value=8.3e-07 Score=72.22 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=40.9
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
++++||.||||+...+|- ...+ ...++||+.++|++|+++|++++++||.+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~---------~~~~---------~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV---------HEID---------NFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCC---------CCHH---------HeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 689999999999643221 0111 237899999999999999999999999885
No 80
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.35 E-value=8.3e-07 Score=68.99 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=44.9
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCC-ChhchHHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGR-NEFQRNTTEKN 189 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR-~~~~~~~T~~n 189 (212)
++++||+||||++.... .+ .. ++ . +.. .+++||+.++++.|+++|++++++|++ +.... ...
T Consensus 1 kli~~DlD~Tl~~~~~~--~~--~~---~~-~----~~~--~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~---~~~ 63 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENI--VV--GE---DP-I----IDL--EVTIKEIRDKLQTLKKNGFLLALASYNDDPHVA---YEL 63 (128)
T ss_pred CEEEEeCCCCCCCCCcc--cc--cC---Cc-c----hhh--HHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHH---HHH
Confidence 57899999999975210 00 00 00 0 000 068999999999999999999999999 55432 345
Q ss_pred HHHCC
Q 028215 190 LLFAG 194 (212)
Q Consensus 190 L~~~G 194 (212)
|+..|
T Consensus 64 l~~~~ 68 (128)
T TIGR01681 64 LKIFE 68 (128)
T ss_pred HHhcc
Confidence 55555
No 81
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.35 E-value=1.8e-06 Score=72.43 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=53.4
Q ss_pred CceEEEecCCCCCCChhhHhh-hcCCCC--------------CC-----------CHHHHHHHHH--hcCCCCChhHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAA-HGFGSE--------------IF-----------NEDAFDEWVD--LAKAPALPASLTF 161 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~-~~~g~~--------------~~-----------~~~~~~~wv~--~~~~~~~pg~lel 161 (212)
+.+++||.||||+++...+.- ..++.. .+ .....++... ....++.||+.++
T Consensus 3 ~~~vifDfDgTi~~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~pG~~e~ 82 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNIIAIMKKFAPPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLLETAEIREGFHEF 82 (219)
T ss_pred CcEEEEcCCCCCCcchhhHHHHHHhCHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHHhCCCcCcCHHHH
Confidence 458999999999988775531 123210 00 0000111111 1357899999999
Q ss_pred HHHHHHCCCeEEEEcCCChhchHHHHHHHHHC
Q 028215 162 YKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (212)
Q Consensus 162 l~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~ 193 (212)
++.|+++|++++++||......+ ..|++.
T Consensus 83 l~~l~~~g~~~~IvS~~~~~~i~---~il~~~ 111 (219)
T PRK09552 83 VQFVKENNIPFYVVSGGMDFFVY---PLLQGL 111 (219)
T ss_pred HHHHHHcCCeEEEECCCcHHHHH---HHHHHh
Confidence 99999999999999999875444 455555
No 82
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.34 E-value=1.2e-06 Score=74.89 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=45.3
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
.++|||||||++.. ...-+.+.+.+++|+++|++++++|||+... ....+.
T Consensus 1 li~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~---~~~~~~ 51 (256)
T TIGR00099 1 LIFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRPYKE---VKNILK 51 (256)
T ss_pred CEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHH
Confidence 37899999999751 1456788999999999999999999999653 335667
Q ss_pred HCCCCC
Q 028215 192 FAGYSD 197 (212)
Q Consensus 192 ~~G~~~ 197 (212)
+.|+..
T Consensus 52 ~~~~~~ 57 (256)
T TIGR00099 52 ELGLDT 57 (256)
T ss_pred HcCCCC
Confidence 777763
No 83
>PTZ00174 phosphomannomutase; Provisional
Probab=98.34 E-value=9e-07 Score=75.88 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=41.1
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
...+.|++||||||+++. ....|.+.+.+++++++|++++++|||+..
T Consensus 3 ~~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~~~ 50 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSDYP 50 (247)
T ss_pred CCCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 357899999999999762 145677899999999999999999999875
No 84
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.33 E-value=8.1e-07 Score=73.39 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=64.5
Q ss_pred CCCCceEEEecCCCCCCChhhHhh--hcCCCCCC----CHHHHHHHHHhc--CCCCChhHHHHHHHHHHCCCeEEEEcCC
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAA--HGFGSEIF----NEDAFDEWVDLA--KAPALPASLTFYKELKQLGFKIFLLTGR 178 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~--~~~g~~~~----~~~~~~~wv~~~--~~~~~pg~lell~~Lk~~G~kI~~vTgR 178 (212)
+..+-+|-||||+|+|-++|++.. ..|....+ ++..|++-.... -.-|.+-+.+|+...+.+|-+|+|+|||
T Consensus 60 G~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGR 139 (237)
T COG3700 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGR 139 (237)
T ss_pred CCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecC
Confidence 446779999999999999886543 22332222 245566555432 3467778899999999999999999999
Q ss_pred ChhchHHHHHHHHH-CCCCC
Q 028215 179 NEFQRNTTEKNLLF-AGYSD 197 (212)
Q Consensus 179 ~~~~~~~T~~nL~~-~G~~~ 197 (212)
+....+.+.+.|.+ +.+..
T Consensus 140 t~gk~d~vsk~Lak~F~i~~ 159 (237)
T COG3700 140 TPGKTDTVSKTLAKNFHITN 159 (237)
T ss_pred CCCcccccchhHHhhcccCC
Confidence 98876666666643 45543
No 85
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.32 E-value=3.8e-07 Score=73.01 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=47.3
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.++++|||||||+++..++...+ . + . ..-...++. .+++|+++|++++++||++.. .+...
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~--~--~----~------~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~---~~~~~ 61 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNG--E--E----I------KAFNVRDGY--GIRCALKSGIEVAIITGRKAK---LVEDR 61 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCC--c--E----E------EEEechhHH--HHHHHHHCCCEEEEEECCCCH---HHHHH
Confidence 36899999999998754332210 0 0 0 000122232 799999999999999999875 34478
Q ss_pred HHHCCCCCC
Q 028215 190 LLFAGYSDW 198 (212)
Q Consensus 190 L~~~G~~~~ 198 (212)
++++|+..+
T Consensus 62 l~~~gi~~~ 70 (154)
T TIGR01670 62 CKTLGITHL 70 (154)
T ss_pred HHHcCCCEE
Confidence 888998854
No 86
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.31 E-value=3e-06 Score=70.20 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..++.||+.++++.|+++|++++++||.+..... ....+...|+..+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~ 138 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMAL 138 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhh
Confidence 4578999999999999999999999997654321 1223444555433
No 87
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.29 E-value=1.8e-06 Score=73.97 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=45.4
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
+++||||||+++.. ..++.+.+.+++|+++|++++++|||+... ....+++
T Consensus 2 i~~DlDGTll~~~~--------------------------~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~---~~~~~~~ 52 (256)
T TIGR01486 2 IFTDLDGTLLDPHG--------------------------YDWGPAKEVLERLQELGIPVIPCTSKTAAE---VEYLRKE 52 (256)
T ss_pred EEEcCCCCCcCCCC--------------------------cCchHHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHH
Confidence 78999999997521 244568999999999999999999999764 3467778
Q ss_pred CCCCCC
Q 028215 193 AGYSDW 198 (212)
Q Consensus 193 ~G~~~~ 198 (212)
.|++.+
T Consensus 53 ~~~~~~ 58 (256)
T TIGR01486 53 LGLEDP 58 (256)
T ss_pred cCCCCc
Confidence 888643
No 88
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.29 E-value=1.5e-06 Score=72.66 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=43.3
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
|++||||||+++.. ...+.+.+.++.|+++|++++++|||+..... ..++.
T Consensus 2 i~~DlDGTLL~~~~--------------------------~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~---~~~~~ 52 (221)
T TIGR02463 2 VFSDLDGTLLDSHS--------------------------YDWQPAAPWLTRLQEAGIPVILCTSKTAAEVE---YLQKA 52 (221)
T ss_pred EEEeCCCCCcCCCC--------------------------CCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHHHH
Confidence 78999999997511 24555889999999999999999999986444 45566
Q ss_pred CCCC
Q 028215 193 AGYS 196 (212)
Q Consensus 193 ~G~~ 196 (212)
.|+.
T Consensus 53 l~~~ 56 (221)
T TIGR02463 53 LGLT 56 (221)
T ss_pred cCCC
Confidence 6765
No 89
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.28 E-value=3.4e-06 Score=69.22 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=44.7
Q ss_pred CceEEEecCCCCCCChh----hHhhhcCC---------CC---------CCCHHH----HHHHHH---hcCCCCChhHHH
Q 028215 110 KDAWVFDIDETLLSNLP----YYAAHGFG---------SE---------IFNEDA----FDEWVD---LAKAPALPASLT 160 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~----~~~~~~~g---------~~---------~~~~~~----~~~wv~---~~~~~~~pg~le 160 (212)
.++||||+||||+|..+ ...+.++. .. +.+++. +..+.. ....+++||+.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 57999999999999765 22222211 00 011111 222221 134679999999
Q ss_pred HHHHHHHCCCeEEEEcCCChh
Q 028215 161 FYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 161 ll~~Lk~~G~kI~~vTgR~~~ 181 (212)
++++|++++ +++++|+.+..
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~~~ 101 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALGDS 101 (197)
T ss_pred HHHHHHhcC-CEEEEeCCccc
Confidence 999999975 67888887654
No 90
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.27 E-value=4e-06 Score=69.44 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..++.||+.+++++|+++ ++++++||.+.... ...|+++|+..|...+.
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~---~~~l~~~~l~~~fd~i~ 143 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQ---YKRLRKSGLFPFFDDIF 143 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHH---HHHHHHCCcHhhcCEEE
Confidence 357899999999999999 99999999876533 35688889877644333
No 91
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.24 E-value=3.1e-06 Score=72.21 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCCceEEEecCCCCCCChhhHhhh------cCCCCCCC-------------------------HHHHHHHHHh-------
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAH------GFGSEIFN-------------------------EDAFDEWVDL------- 149 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~------~~g~~~~~-------------------------~~~~~~wv~~------- 149 (212)
.+.-+++||+|||++||...|... .+|. +|+ +..+.++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk-~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~ 86 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGK-PYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDR 86 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCC-CChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 356799999999999999887751 2332 221 2122222221
Q ss_pred --cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 150 --AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 150 --~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
....++||+.+|++.|+.+|++++++|++++...+.-..++
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~ 129 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRH 129 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh
Confidence 46789999999999999999999999999988776544444
No 92
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.24 E-value=2.8e-06 Score=75.22 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=46.1
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
++.|++||||||++... ...+.+.+.+++|+++|++|+++|||+..... ..
T Consensus 1 ~KLIftDLDGTLLd~~~--------------------------~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~---~l 51 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEF--------------------------NSYGAARQALAALERRSIPLVLYSLRTRAQLE---HL 51 (302)
T ss_pred CcEEEEeCCCCCcCCCC--------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH---HH
Confidence 46899999999998522 23456789999999999999999999986544 45
Q ss_pred HHHCCCCC
Q 028215 190 LLFAGYSD 197 (212)
Q Consensus 190 L~~~G~~~ 197 (212)
+++.|+..
T Consensus 52 ~~~Lgl~~ 59 (302)
T PRK12702 52 CRQLRLEH 59 (302)
T ss_pred HHHhCCCC
Confidence 56667764
No 93
>PLN02887 hydrolase family protein
Probab=98.24 E-value=3e-06 Score=81.45 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
+.+.|++||||||+++. ...-+.+.+.+++++++|++++++|||+..... .
T Consensus 307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~---~ 357 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKARPAVI---D 357 (580)
T ss_pred CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHH---H
Confidence 46799999999999752 145678899999999999999999999976433 4
Q ss_pred HHHHCCCC
Q 028215 189 NLLFAGYS 196 (212)
Q Consensus 189 nL~~~G~~ 196 (212)
.++..|+.
T Consensus 358 ~l~~L~l~ 365 (580)
T PLN02887 358 ILKMVDLA 365 (580)
T ss_pred HHHHhCcc
Confidence 55555654
No 94
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.24 E-value=1.1e-06 Score=72.35 Aligned_cols=80 Identities=14% Similarity=-0.007 Sum_probs=52.9
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHH----HHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCC-ChhchH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDE----WVDLAKAPALPASLTFYKELKQLGFKIFLLTGR-NEFQRN 184 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~----wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR-~~~~~~ 184 (212)
++.+|||+|+|+++.+-+--. +.++.+..-++ -......+++||+.++++.|+++|++++++||+ +..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--- 74 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLL----GGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--- 74 (174)
T ss_pred CcEEEEeCCCCCcCccccccc----CCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH---
Confidence 578999999999975322111 12222111000 011234688999999999999999999999998 553
Q ss_pred HHHHHHHHCCCC
Q 028215 185 TTEKNLLFAGYS 196 (212)
Q Consensus 185 ~T~~nL~~~G~~ 196 (212)
.....|..+|+.
T Consensus 75 ~~~~~L~~~~l~ 86 (174)
T TIGR01685 75 WAYEILGTFEIT 86 (174)
T ss_pred HHHHHHHhCCcC
Confidence 334677888876
No 95
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.22 E-value=5.6e-06 Score=84.54 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC-CCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS-DWK 199 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~-~~~ 199 (212)
.++||+.+++++|+++|++++++||...... ...|+++|+. .|.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~---~~~L~~~gl~~~~F 205 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKV---DANLAAAGLPLSMF 205 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHH---HHHHHHcCCChhHC
Confidence 4799999999999999999999999877543 3678889985 443
No 96
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.22 E-value=7e-06 Score=68.43 Aligned_cols=47 Identities=4% Similarity=0.107 Sum_probs=37.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCC-eEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK-KLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~-~Lil 203 (212)
..++.||+.++++.| +++++++||.+.. .+...|+++|+..|. ..+.
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~---~~~~~l~~~~l~~~F~~~v~ 133 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVS---KMQHSLGKTGMLHYFPDKLF 133 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHH---HHHHHHHhcChHHhCcceEe
Confidence 468899999999998 4999999998754 455678889998775 3443
No 97
>PRK11590 hypothetical protein; Provisional
Probab=98.21 E-value=1.3e-05 Score=67.13 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCCChhHHHHH-HHHHHCCCeEEEEcCCChhchHHHHHHHHHCCC
Q 028215 152 APALPASLTFY-KELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (212)
Q Consensus 152 ~~~~pg~lell-~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~ 195 (212)
..+.||+.+++ +.++++|++++++||+++.. +...+..+|+
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~---~~~il~~l~~ 135 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPL---VEQVYFDTPW 135 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHH---HHHHHHHccc
Confidence 56799999999 57888999999999999863 3467777775
No 98
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.20 E-value=1.2e-05 Score=64.22 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
...++.||+.++++.++++|++++++|+.... .+...++++|+..+
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~---~i~~~~~~~g~~~~ 115 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDF---FVEPVAEKLGIDDV 115 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHH---HHHHHHHHcCCchh
Confidence 45678899999999999999999999999875 44467788888754
No 99
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.20 E-value=5.6e-06 Score=68.28 Aligned_cols=31 Identities=16% Similarity=0.471 Sum_probs=28.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
.++.||+.++++.|+++|++++++||.+...
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~ 113 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH 113 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhh
Confidence 4689999999999999999999999988653
No 100
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.18 E-value=4e-06 Score=71.57 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=49.2
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
++||+||||++.. .++|++.+.++.++++|+++.++||.+...+....+.|.+
T Consensus 1 ~lfD~DGvL~~~~---------------------------~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLGH---------------------------KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcCC---------------------------ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999862 5688999999999999999999998776666677788888
Q ss_pred -CCCCC
Q 028215 193 -AGYSD 197 (212)
Q Consensus 193 -~G~~~ 197 (212)
.|++.
T Consensus 54 ~~g~~~ 59 (236)
T TIGR01460 54 LLGVDV 59 (236)
T ss_pred hcCCCC
Confidence 78764
No 101
>PRK06769 hypothetical protein; Validated
Probab=98.16 E-value=1.9e-06 Score=70.31 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhc-----h
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-----R 183 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~-----~ 183 (212)
+.++++||.||||--. ++ +.......++||+.++|++|+++|++++++||.+... .
T Consensus 3 ~~~~~~~d~d~~~~~~-~~------------------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~ 63 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD-TT------------------IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATI 63 (173)
T ss_pred CCcEEEEeCCCcccCC-CC------------------CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCH
Confidence 5789999999999421 00 0001223789999999999999999999999987421 1
Q ss_pred HHHHHHHHHCCCCCC
Q 028215 184 NTTEKNLLFAGYSDW 198 (212)
Q Consensus 184 ~~T~~nL~~~G~~~~ 198 (212)
..+...|+..|+..+
T Consensus 64 ~~~~~~l~~~g~~~~ 78 (173)
T PRK06769 64 ADFVQELKGFGFDDI 78 (173)
T ss_pred HHHHHHHHhCCcCEE
Confidence 234455778887653
No 102
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.11 E-value=9e-06 Score=69.18 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
..++.||+.++|+.|+++ ++++++||.+.. ++..|+..|...++
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~ 154 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVL 154 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeE
Confidence 367889999999999875 999999997653 36678877655444
No 103
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.10 E-value=6.7e-06 Score=73.38 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=48.0
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC----CCeEEEEcCCChhchHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL----GFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~----G~kI~~vTgR~~~~~~~T~ 187 (212)
+++|||||||+++. +++|++.++++.|+++ |+++.++||..........
T Consensus 2 ~~ifD~DGvL~~g~---------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~ 54 (321)
T TIGR01456 2 GFAFDIDGVLFRGK---------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARA 54 (321)
T ss_pred EEEEeCcCceECCc---------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHH
Confidence 79999999999862 5699999999999998 9999999998755444444
Q ss_pred HHH-HHCCCC
Q 028215 188 KNL-LFAGYS 196 (212)
Q Consensus 188 ~nL-~~~G~~ 196 (212)
+.| ++.|++
T Consensus 55 ~~l~~~lG~~ 64 (321)
T TIGR01456 55 EEISSLLGVD 64 (321)
T ss_pred HHHHHHcCCC
Confidence 555 888886
No 104
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.09 E-value=2.3e-05 Score=66.25 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
.+..||+.++++.++++|++++++||..... +..-.++.|+..+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l---v~~ia~~lg~d~~ 119 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL---VEPIAERLGIDYV 119 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHH---HHHHHHHhCCchh
Confidence 7899999999999999999999999999853 4466677899865
No 105
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.07 E-value=2e-05 Score=74.94 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=55.5
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh------
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF------ 181 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~------ 181 (212)
+..++++||+||||+.+... ..| +.++++|. .++||+.+.|+.|+++|++|+++||.+..
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg---~~~---~~~~~d~~--------~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~ 231 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSG---KVF---PKGPDDWQ--------IIFPEIPEKLKELEADGFKICIFTNQGGIARGKIN 231 (526)
T ss_pred ccCcEEEEECCCCccccCCC---ccC---CCCHHHee--------ecccCHHHHHHHHHHCCCEEEEEECCcccccCccc
Confidence 45789999999999975220 001 12445551 25899999999999999999999997762
Q ss_pred ---chHHHHHHHHHCCCCCCC
Q 028215 182 ---QRNTTEKNLLFAGYSDWK 199 (212)
Q Consensus 182 ---~~~~T~~nL~~~G~~~~~ 199 (212)
....+...|+.+|++ ++
T Consensus 232 ~~~~~~ki~~iL~~lgip-fd 251 (526)
T TIGR01663 232 ADDFKAKIEAIVAKLGVP-FQ 251 (526)
T ss_pred HHHHHHHHHHHHHHcCCc-eE
Confidence 113356778889998 54
No 106
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.00 E-value=3.6e-06 Score=66.85 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=54.7
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCC-HHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFN-EDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~-~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
+++.+|+|+||||+.+..-- ........+. ......-.......+.||+.++|+.|+ +|++++++|+.+....+
T Consensus 1 ~k~~lvldld~tl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~--- 75 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRS-FKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYAD--- 75 (148)
T ss_pred CCcEEEEeCCCCeECCCCCc-CCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHH---
Confidence 36789999999999874200 0000000000 000000001123477999999999998 67999999999986544
Q ss_pred HHHHHCCCCC-C-CeEEeec
Q 028215 188 KNLLFAGYSD-W-KKLFLRY 205 (212)
Q Consensus 188 ~nL~~~G~~~-~-~~Lilr~ 205 (212)
..|+..|+.. + +.++-+.
T Consensus 76 ~il~~l~~~~~~f~~i~~~~ 95 (148)
T smart00577 76 PVLDLLDPKKYFGYRRLFRD 95 (148)
T ss_pred HHHHHhCcCCCEeeeEEECc
Confidence 4566777743 3 4455543
No 107
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.00 E-value=1.3e-05 Score=65.91 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=39.2
Q ss_pred EEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 113 vvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
++||+||||+++.. .++-|.+.+.+++|+++|++++++|||+.....
T Consensus 2 i~~D~DgTL~~~~~-------------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~ 48 (204)
T TIGR01484 2 LFFDLDGTLLDPNA-------------------------HELSPETIEALERLREAGVKVVLVTGRSLAEIK 48 (204)
T ss_pred EEEeCcCCCcCCCC-------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence 78999999997410 146689999999999999999999999986444
No 108
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.96 E-value=2.2e-05 Score=76.47 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T 186 (212)
+-.++.|++||||||+++.. ...+.+.+.++.|+++|++++++|||+.....
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~--------------------------~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~-- 464 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT--------------------------YSYSTALDALRLLKDKELPLVFCSAKTMGEQD-- 464 (694)
T ss_pred CceeeEEEEECcCCCcCCCC--------------------------ccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHH--
Confidence 34678999999999998621 23356788999999999999999999976433
Q ss_pred HHHHHHCCCC
Q 028215 187 EKNLLFAGYS 196 (212)
Q Consensus 187 ~~nL~~~G~~ 196 (212)
..++..|+.
T Consensus 465 -~l~~~Lgl~ 473 (694)
T PRK14502 465 -LYRNELGIK 473 (694)
T ss_pred -HHHHHcCCC
Confidence 455666765
No 109
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.93 E-value=4.5e-05 Score=68.42 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=36.6
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
...++.||+.++++.|++.|++++++||......+ ..+++.|+..
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~---~l~~~Lgld~ 222 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFAD---YLRDKLRLDA 222 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHH---HHHHHcCCCe
Confidence 35789999999999999999999999998865433 4556678764
No 110
>PLN02423 phosphomannomutase
Probab=97.92 E-value=1.9e-05 Score=67.86 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=37.3
Q ss_pred CCCceEE-EecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 108 DGKDAWV-FDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 108 ~~~~avv-fDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.++++++ |||||||+++. ...-|.+.+.+++|+++ ++++++|||+..
T Consensus 4 ~~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~~~ 51 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSDLS 51 (245)
T ss_pred CccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcCHH
Confidence 3566666 99999999752 13457889999999977 999999999653
No 111
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.90 E-value=3.5e-05 Score=63.14 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=36.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..+.|++.++++.++++|++++++|+.++...+ ..++..|+..+
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~---~~~~~lg~~~~ 129 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVK---PLARILGIDNA 129 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHH---HHHHHcCCcce
Confidence 468999999999999999999999999986444 56677788754
No 112
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.87 E-value=5.9e-05 Score=61.24 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=47.9
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
.+.+++++|+|||++.. ....+.|++.+++++|+++|++++++||.+... ...
T Consensus 23 ~~v~~vv~D~Dgtl~~~-------------------------~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~--~~~ 75 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP-------------------------DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQ--RAK 75 (170)
T ss_pred CCCCEEEEecCCccccC-------------------------CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHH--HHH
Confidence 46789999999999853 113688999999999999999999999987321 223
Q ss_pred HHHHHCCCC
Q 028215 188 KNLLFAGYS 196 (212)
Q Consensus 188 ~nL~~~G~~ 196 (212)
..++..|+.
T Consensus 76 ~~~~~~gl~ 84 (170)
T TIGR01668 76 AVEKALGIP 84 (170)
T ss_pred HHHHHcCCE
Confidence 445667765
No 113
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.86 E-value=3e-05 Score=66.28 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=45.5
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
..|+.|+||||++... ...+..|...+++++++++|++++++|||+..... .-+
T Consensus 2 ~li~tDlDGTLl~~~~-----------------------~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~---~~~ 55 (249)
T TIGR01485 2 LLLVSDLDNTLVDHTD-----------------------GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYK---ELQ 55 (249)
T ss_pred eEEEEcCCCcCcCCCC-----------------------CChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHH---HHH
Confidence 3688999999997310 01145688899999999999999999999975433 445
Q ss_pred HHCCCCCC
Q 028215 191 LFAGYSDW 198 (212)
Q Consensus 191 ~~~G~~~~ 198 (212)
+.+++...
T Consensus 56 ~~~~~~~p 63 (249)
T TIGR01485 56 KQKPLLTP 63 (249)
T ss_pred hcCCCCCC
Confidence 55676543
No 114
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.86 E-value=1.8e-05 Score=65.09 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
++++++||+||||+++.-++...+-....|+ . .. ...++.|+++|++++++|||+.. .+..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~--------~------~d--~~~i~~L~~~Gi~v~I~T~~~~~---~v~~ 80 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFN--------V------RD--GYGIRCLLTSGIEVAIITGRKSK---LVED 80 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEe--------c------cc--hHHHHHHHHCCCEEEEEeCCCcH---HHHH
Confidence 5889999999999986322111100000110 0 11 23677888999999999999875 3446
Q ss_pred HHHHCCCCCC
Q 028215 189 NLLFAGYSDW 198 (212)
Q Consensus 189 nL~~~G~~~~ 198 (212)
.++++|+..+
T Consensus 81 ~l~~lgl~~~ 90 (183)
T PRK09484 81 RMTTLGITHL 90 (183)
T ss_pred HHHHcCCcee
Confidence 7788888753
No 115
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.84 E-value=8.8e-05 Score=62.20 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=37.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..++.||+.++++.++++| +++++||.... .+...+++.|+..+
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~~~---~~~~il~~lgi~~~ 109 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTFYE---FSQPLMRQLGFPTL 109 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCChHH---HHHHHHHHcCCchh
Confidence 4588999999999999985 99999999875 45567888899854
No 116
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.79 E-value=3.7e-05 Score=66.93 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHH-CCCeEEEEcCCChhchHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQ-LGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~-~G~kI~~vTgR~~~~~~~T~ 187 (212)
...+++||+||||++..+. .....+-|.+.+.|+.|++ .|++++++|||+.....
T Consensus 13 ~~~li~~D~DGTLl~~~~~---------------------p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~--- 68 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPH---------------------PDQVVVPDNILQGLQLLATANDGALALISGRSMVELD--- 68 (266)
T ss_pred CCEEEEEecCCCCCCCCCC---------------------cccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHH---
Confidence 3468999999999974110 0113567899999999998 79999999999986443
Q ss_pred HHHHHCC
Q 028215 188 KNLLFAG 194 (212)
Q Consensus 188 ~nL~~~G 194 (212)
+++...+
T Consensus 69 ~~~~~~~ 75 (266)
T PRK10187 69 ALAKPYR 75 (266)
T ss_pred HhcCccc
Confidence 4454444
No 117
>PRK08238 hypothetical protein; Validated
Probab=97.74 E-value=0.00011 Score=69.33 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=56.1
Q ss_pred CCCceEEEecCCCCCCChhhHhhhc--CCCCCCC-----------HHHHHHHHH------hcCCCCChhHHHHHHHHHHC
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHG--FGSEIFN-----------EDAFDEWVD------LAKAPALPASLTFYKELKQL 168 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~--~g~~~~~-----------~~~~~~wv~------~~~~~~~pg~lell~~Lk~~ 168 (212)
......+||+||||+.+.-.+...- ....|+. .....+... ....|..||+.+++++++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 3456899999999998766544311 1111111 011111111 13456789999999999999
Q ss_pred CCeEEEEcCCChhchHHHHHHHHHCCC
Q 028215 169 GFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (212)
Q Consensus 169 G~kI~~vTgR~~~~~~~T~~nL~~~G~ 195 (212)
|++++++|++++...+ ..++..|+
T Consensus 88 G~~v~LaTas~~~~a~---~i~~~lGl 111 (479)
T PRK08238 88 GRKLVLATASDERLAQ---AVAAHLGL 111 (479)
T ss_pred CCEEEEEeCCCHHHHH---HHHHHcCC
Confidence 9999999999986444 56667786
No 118
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.73 E-value=2.5e-05 Score=63.88 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
..+++|||+|||+.|..-+|...+-.-..|+ ...| .-++.|+++|++++++||++.. .+..
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~--------------~~D~--~~~~~L~~~Gi~laIiT~k~~~---~~~~ 66 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFD--------------IKDG--MGVIVLQLCGIDVAIITSKKSG---AVRH 66 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEe--------------cchH--HHHHHHHHCCCEEEEEECCCcH---HHHH
Confidence 4789999999999998665554321111221 1122 2477889999999999999875 4457
Q ss_pred HHHHCCCCCCC
Q 028215 189 NLLFAGYSDWK 199 (212)
Q Consensus 189 nL~~~G~~~~~ 199 (212)
.|+.+|+..|.
T Consensus 67 ~l~~lgi~~~f 77 (169)
T TIGR02726 67 RAEELKIKRFH 77 (169)
T ss_pred HHHHCCCcEEE
Confidence 88889998654
No 119
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=97.73 E-value=7.1e-05 Score=66.21 Aligned_cols=63 Identities=27% Similarity=0.409 Sum_probs=56.1
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
++.+.++||-||+|+.- ..++||+.+.++.|++.|.+++|+||.+...++.-.
T Consensus 20 ~~~DtfifDcDGVlW~g---------------------------~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWLG---------------------------EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hhcCEEEEcCCcceeec---------------------------CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 56889999999998842 279999999999999999999999999988888888
Q ss_pred HHHHHCCCCC
Q 028215 188 KNLLFAGYSD 197 (212)
Q Consensus 188 ~nL~~~G~~~ 197 (212)
+.++++|+..
T Consensus 73 kK~~~lG~~~ 82 (306)
T KOG2882|consen 73 KKFAKLGFNS 82 (306)
T ss_pred HHHHHhCccc
Confidence 8888999884
No 120
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.70 E-value=0.00013 Score=61.09 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAG 194 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G 194 (212)
..++.||+.++++.|+++|++++++|+..+...+ ..|+..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~---~il~~~~ 108 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVY---PLLEGIV 108 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHH---HHHHhhC
Confidence 5789999999999999999999999999875444 4455543
No 121
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.69 E-value=5.8e-05 Score=63.82 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=39.3
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
.+++|+||||+++.+.. +...+.++ ++++|++++++|||+..... +.+.
T Consensus 1 li~~DlDgTLl~~~~~~---------------------------~~~~~~~~-~~~~gi~~viaTGR~~~~v~---~~~~ 49 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGL---------------------------ASFVELLR-GSGDAVGFGIATGRSVESAK---SRYA 49 (236)
T ss_pred CeEEeccccccCCHHHH---------------------------HHHHHHHH-hcCCCceEEEEeCCCHHHHH---HHHH
Confidence 37899999999753211 11225666 68999999999999986444 5667
Q ss_pred HCCCCCC
Q 028215 192 FAGYSDW 198 (212)
Q Consensus 192 ~~G~~~~ 198 (212)
..++...
T Consensus 50 ~l~l~~~ 56 (236)
T TIGR02471 50 KLNLPSP 56 (236)
T ss_pred hCCCCCC
Confidence 7777543
No 122
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.69 E-value=3.1e-05 Score=62.62 Aligned_cols=69 Identities=25% Similarity=0.402 Sum_probs=44.3
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCC--CHHHHHHHHHhcCCCCC-hhHHHHHHHHHHCCCeEEEEcCCChh------
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIF--NEDAFDEWVDLAKAPAL-PASLTFYKELKQLGFKIFLLTGRNEF------ 181 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~--~~~~~~~wv~~~~~~~~-pg~lell~~Lk~~G~kI~~vTgR~~~------ 181 (212)
|.+.||+||||+.+.. +..| ++++| ..+ |++.+.|++|.+.||+|+++||-..-
T Consensus 1 Kia~fD~DgTLi~~~s--------~~~f~~~~~D~---------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~ 63 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS--------GKKFPKDPDDW---------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGE 63 (159)
T ss_dssp SEEEE-SCTTTEE-ST--------STTS-SSTCGG---------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTC
T ss_pred CEEEEeCCCCccCCCC--------CCcCcCCHHHh---------hhcchhHHHHHHHHHhcCCeEEEEeCcccccccccc
Confidence 4688999999997632 1112 12333 444 47999999999999999999985321
Q ss_pred -----chHHHHHHHHHCCCC
Q 028215 182 -----QRNTTEKNLLFAGYS 196 (212)
Q Consensus 182 -----~~~~T~~nL~~~G~~ 196 (212)
........++..|++
T Consensus 64 ~~~~~~~~ki~~il~~l~ip 83 (159)
T PF08645_consen 64 KDLENFHEKIENILKELGIP 83 (159)
T ss_dssp CHHHHHHHHHHHHHHHCTS-
T ss_pred chHHHHHHHHHHHHHHcCCc
Confidence 123345566778888
No 123
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.67 E-value=0.00014 Score=63.13 Aligned_cols=88 Identities=25% Similarity=0.369 Sum_probs=62.5
Q ss_pred CCceEEEecCCCCCCChhh-----HhhhcC------CCCCCC--HHHHHHHH----HhcCC-CCChhHHHHHHHHHHCCC
Q 028215 109 GKDAWVFDIDETLLSNLPY-----YAAHGF------GSEIFN--EDAFDEWV----DLAKA-PALPASLTFYKELKQLGF 170 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~-----~~~~~~------g~~~~~--~~~~~~wv----~~~~~-~~~pg~lell~~Lk~~G~ 170 (212)
..--||||||+||+-...+ |....+ +..... ...+.+|+ ...+. ..=+.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 3457999999999965321 111101 011111 24456776 33343 445788999999999999
Q ss_pred eEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 171 KIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 171 kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
+++-+|.|+...+..|.+.|++.|+.
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 99999999999999999999999998
No 124
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.66 E-value=0.00016 Score=60.06 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEE
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
..++.|++.++|+.++.+ ++++++||-... .....|++.|+.++...+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~---~~~~~l~~~gl~~~Fd~v 144 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARP---HQERKLRQLGLLDYFDAV 144 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChH---HHHHHHHHcCChhhhheE
Confidence 368999999999999999 999999996543 345789999988765433
No 125
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.66 E-value=0.00019 Score=57.94 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred CCCCceEEEecCCCCCCChhhHhhh---cCCCCCCCHHH---HHHH---HHhcCCCCChhHHHHHHHHHHCCCeEEEEcC
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAH---GFGSEIFNEDA---FDEW---VDLAKAPALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~---~~g~~~~~~~~---~~~w---v~~~~~~~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
..++..+|+|+|+||+.+....... .+.....+.+. ...+ .......+.||+.++|+.|++. +++++.|+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeC
Confidence 3578999999999999874321000 00000000000 0000 0012246789999999999855 99999999
Q ss_pred CChhchHHHHHHHHHCCCCC-C--CeEEeecC
Q 028215 178 RNEFQRNTTEKNLLFAGYSD-W--KKLFLRYR 206 (212)
Q Consensus 178 R~~~~~~~T~~nL~~~G~~~-~--~~Lilr~~ 206 (212)
.++.......+ ..+... + +.++-|.+
T Consensus 82 ~~~~yA~~vl~---~ldp~~~~F~~ri~~rd~ 110 (156)
T TIGR02250 82 GTRAYAQAIAK---LIDPDGKYFGDRIISRDE 110 (156)
T ss_pred CcHHHHHHHHH---HhCcCCCeeccEEEEecc
Confidence 99876664444 445442 2 34555653
No 126
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.65 E-value=0.00023 Score=59.91 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCCChhHHHHHH-HHHHCCCeEEEEcCCChhchHHHHHHHHHCCC
Q 028215 152 APALPASLTFYK-ELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (212)
Q Consensus 152 ~~~~pg~lell~-~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~ 195 (212)
..+.||+.++++ .++++|++++++||+++...+ ...+..|+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~---~ia~~~~~ 134 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVE---AVYFDSNF 134 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHH---HHHHhccc
Confidence 367899999996 788899999999999986433 44445444
No 127
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.63 E-value=0.00015 Score=64.66 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
.+|++|+|+|+||+...- ...+-.+. .-.++.||+.++++.|+++|++++++|++++. .+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~--~e~g~~~i-------------~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~---~a~~ 63 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVL--GEDGIDNL-------------NLSPLHKTLQEKIKTLKKQGFLLALASKNDED---DAKK 63 (320)
T ss_pred CeEEEEEcCCCCCCCCEE--ccCCcccc-------------ccCccHHHHHHHHHHHHhCCCEEEEEcCCCHH---HHHH
Confidence 478999999999996410 00000000 01256899999999999999999999999875 3446
Q ss_pred HHHH----CCCCCCC
Q 028215 189 NLLF----AGYSDWK 199 (212)
Q Consensus 189 nL~~----~G~~~~~ 199 (212)
.|++ .|+..+.
T Consensus 64 ~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 64 VFERRKDFILQAEDF 78 (320)
T ss_pred HHHhCccccCcHHHe
Confidence 6777 6666543
No 128
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.60 E-value=0.00031 Score=60.43 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=59.1
Q ss_pred eEEEecCCCCCCCh-hhHhhhcCCCCCC--------CHHHHHHHHHh-------------------cCCCCChhHHHHHH
Q 028215 112 AWVFDIDETLLSNL-PYYAAHGFGSEIF--------NEDAFDEWVDL-------------------AKAPALPASLTFYK 163 (212)
Q Consensus 112 avvfDIDgTLldn~-~~~~~~~~g~~~~--------~~~~~~~wv~~-------------------~~~~~~pg~lell~ 163 (212)
.+|||.|+|+++-. ..+.-..++.+.. ....|.+++.. ...|+.||+.++++
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~ 81 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR 81 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence 48999999999743 3333333443221 11234444431 46799999999999
Q ss_pred HH--HHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 164 EL--KQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 164 ~L--k~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
.+ +..|+.++++|....-..+ .+|+++|+...
T Consensus 82 ~l~~~~~~~~~~IiSDaNs~fI~---~iL~~~gl~~~ 115 (234)
T PF06888_consen 82 FLAKNQRGFDLIIISDANSFFIE---TILEHHGLRDC 115 (234)
T ss_pred HHHhcCCCceEEEEeCCcHhHHH---HHHHhCCCccc
Confidence 99 4579999999999886555 79999999864
No 129
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.59 E-value=0.00014 Score=59.68 Aligned_cols=82 Identities=21% Similarity=0.144 Sum_probs=44.5
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHH-HHHH--hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFD-EWVD--LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNT 185 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~-~wv~--~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~ 185 (212)
-|+.||||+|.||++-.-+.. ...||....-. .-+. ......+|++.++|+.|+++|++++++|..++. +.
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P--~~ 75 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP--DW 75 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H--HH
T ss_pred CCcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh--HH
Confidence 378999999999997532211 11222111000 0111 123578999999999999999999999976554 35
Q ss_pred HHHHHHHCCCC
Q 028215 186 TEKNLLFAGYS 196 (212)
Q Consensus 186 T~~nL~~~G~~ 196 (212)
..+-|+.++++
T Consensus 76 A~~~L~~l~i~ 86 (169)
T PF12689_consen 76 ARELLKLLEID 86 (169)
T ss_dssp HHHHHHHTT-C
T ss_pred HHHHHHhcCCC
Confidence 56788888888
No 130
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.58 E-value=0.00022 Score=64.85 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=55.4
Q ss_pred CCceEEEecCCCCCCChh--hHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCC-------
Q 028215 109 GKDAWVFDIDETLLSNLP--YYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN------- 179 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~--~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~------- 179 (212)
++++++||.||||..... |+... ....++.||+.++|++|+++|++++++||.+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~-----------------~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~ 63 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDS-----------------LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSF 63 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccC-----------------cccceECcCHHHHHHHHHhCCCeEEEEECCccccCccc
Confidence 367999999999997532 11110 1235899999999999999999999999952
Q ss_pred -hh----chHHHHHHHHHCCCCCCCeEEee
Q 028215 180 -EF----QRNTTEKNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 180 -~~----~~~~T~~nL~~~G~~~~~~Lilr 204 (212)
+. ....+...+...|+. ++.++..
T Consensus 64 ~~~~l~~~~~~i~~iL~~~gl~-fd~i~i~ 92 (354)
T PRK05446 64 PQEDFDPPHNLMMQIFESQGIK-FDEVLIC 92 (354)
T ss_pred cHHHHhhHHHHHHHHHHHcCCc-eeeEEEe
Confidence 11 123455678888886 5556554
No 131
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.56 E-value=7.4e-05 Score=59.85 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeE
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~L 201 (212)
..++.||+.++|+ +++++||.+..... ..|++.|+..+...
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~---~~l~~~~l~~~fd~ 128 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFD---QFAQQAGLPWYFDR 128 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHH---HHHHHCCCHHHHhh
Confidence 4678999999998 38899998876443 57888888876443
No 132
>PLN03017 trehalose-phosphatase
Probab=97.54 E-value=0.00018 Score=65.65 Aligned_cols=56 Identities=21% Similarity=0.073 Sum_probs=41.7
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
.+++.++++|+||||+.-.. . ...+.+-|++.+.|++|. +|++++++|||+.....
T Consensus 108 ~~k~~llflD~DGTL~Piv~---~------------------p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~ 163 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVD---D------------------PDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVY 163 (366)
T ss_pred cCCCeEEEEecCCcCcCCcC---C------------------cccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHH
Confidence 44567888999999993100 0 012357799999999999 88999999999976443
No 133
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00043 Score=58.06 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=59.5
Q ss_pred CCceEEEecCCCCCCChhhHhhh---c------------CCC-CCCC-------------HHHHHHHHHhcCCCCChhHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAH---G------------FGS-EIFN-------------EDAFDEWVDLAKAPALPASL 159 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~---~------------~g~-~~~~-------------~~~~~~wv~~~~~~~~pg~l 159 (212)
..++|+||+|-|++.-...-.-. + .++ .+|. ..+..+++.+.+....||+.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~ 94 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIR 94 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHH
Confidence 46799999999999754321110 1 111 1231 24455666667888999999
Q ss_pred HHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 160 TFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 160 ell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
+|...|+++|.+++++||--+...+... ..+|++.
T Consensus 95 eLv~~L~~~~~~v~liSGGF~~~i~~Va---~~Lgi~~ 129 (227)
T KOG1615|consen 95 ELVSRLHARGTQVYLISGGFRQLIEPVA---EQLGIPK 129 (227)
T ss_pred HHHHHHHHcCCeEEEEcCChHHHHHHHH---HHhCCcH
Confidence 9999999999999999998766555433 3458874
No 134
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.47 E-value=0.00041 Score=56.72 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=49.6
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T 186 (212)
..|.+++++|+|.||+.- ....+-|.+.+.+..++++|++++++||..+.-..
T Consensus 25 ~~Gikgvi~DlDNTLv~w-------------------------d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~-- 77 (175)
T COG2179 25 AHGIKGVILDLDNTLVPW-------------------------DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVA-- 77 (175)
T ss_pred HcCCcEEEEeccCceecc-------------------------cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHH--
Confidence 357999999999999952 11256788999999999999999999998775333
Q ss_pred HHHHHHCCCC
Q 028215 187 EKNLLFAGYS 196 (212)
Q Consensus 187 ~~nL~~~G~~ 196 (212)
.+.+++|++
T Consensus 78 -~~~~~l~v~ 86 (175)
T COG2179 78 -RAAEKLGVP 86 (175)
T ss_pred -hhhhhcCCc
Confidence 577777877
No 135
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.42 E-value=0.00014 Score=57.75 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=49.6
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
+.+|||+||||+++...-.. +.+...- .-.........||+.+||+.+.+ .+.+++.|+..+.......+.|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~------~~~~~~~-~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL------PYDFKII-DQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT------T-SEEEE-TEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCC------Cccccee-ccccceeEeeCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhh
Confidence 57999999999986431100 0000000 00000113578999999999954 4999999999988877777777
Q ss_pred HHCCCCCCCeEEeec
Q 028215 191 LFAGYSDWKKLFLRY 205 (212)
Q Consensus 191 ~~~G~~~~~~Lilr~ 205 (212)
...+-. +.+.+.|.
T Consensus 73 dp~~~~-~~~~~~r~ 86 (159)
T PF03031_consen 73 DPNGKL-FSRRLYRD 86 (159)
T ss_dssp TTTTSS-EEEEEEGG
T ss_pred hhhccc-cccccccc
Confidence 653322 34555554
No 136
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.40 E-value=0.00039 Score=56.18 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=47.3
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCC-HHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFN-EDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~-~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
++.+|+|+||||+.+..--... ...|. .-..+.-...-.....||+.+||+.|.+. ++|++.|+.++...+...+
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~ 76 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV---DADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLD 76 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC---CCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHH
Confidence 4689999999999773211000 00000 00000000001235789999999999988 9999999999876665444
Q ss_pred HHH
Q 028215 189 NLL 191 (212)
Q Consensus 189 nL~ 191 (212)
.|.
T Consensus 77 ~ld 79 (162)
T TIGR02251 77 ILD 79 (162)
T ss_pred HHC
Confidence 443
No 137
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.38 E-value=0.00044 Score=66.63 Aligned_cols=71 Identities=21% Similarity=0.241 Sum_probs=51.5
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
-+.||-|||||+.-+.-. .+ .+. + -++.=...|+.+|+...+++||++.|+|+|.-.+...|...
T Consensus 530 ~kIVISDIDGTITKSDvL-Gh-~lp---~----------iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~y 594 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVL-GH-VLP---M----------IGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQY 594 (738)
T ss_pred CcEEEecCCCceEhhhhh-hh-hhh---h----------hcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHH
Confidence 457889999999966321 11 000 0 11222457999999999999999999999999998888877
Q ss_pred HHHCCC
Q 028215 190 LLFAGY 195 (212)
Q Consensus 190 L~~~G~ 195 (212)
|+...=
T Consensus 595 L~nv~Q 600 (738)
T KOG2116|consen 595 LKNVEQ 600 (738)
T ss_pred HHHHhh
Confidence 766543
No 138
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.36 E-value=0.00026 Score=57.34 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=50.8
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
...+-+|||+||||.|-.-||..++-....|+ ...|. -++.|.+.|++++++|||... ..+
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFn--------------v~DG~--Gik~l~~~Gi~vAIITGr~s~---ive 66 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFN--------------VRDGH--GIKLLLKSGIKVAIITGRDSP---IVE 66 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeee--------------ccCcH--HHHHHHHcCCeEEEEeCCCCH---HHH
Confidence 35788999999999998777665432222332 22332 367888999999999999876 344
Q ss_pred HHHHHCCCCC
Q 028215 188 KNLLFAGYSD 197 (212)
Q Consensus 188 ~nL~~~G~~~ 197 (212)
+..+..|+..
T Consensus 67 ~Ra~~LGI~~ 76 (170)
T COG1778 67 KRAKDLGIKH 76 (170)
T ss_pred HHHHHcCCce
Confidence 6778888873
No 139
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.36 E-value=0.00023 Score=57.36 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
|++.++++.++++|++++++|+.++. .+...++..|++..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~---~i~~~~~~~~i~~~ 131 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDE---IIEPIAERLGIDDD 131 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHH---HHHHHHHHTTSSEG
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHH---HHHHHHHHcCCCce
Confidence 44449999999999999999999875 34456778899863
No 140
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.33 E-value=0.00021 Score=71.74 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHH-HHCCCeEEEEcCCChhchHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKEL-KQLGFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~L-k~~G~kI~~vTgR~~~~~~~T 186 (212)
.+++++++|+||||+...+. ...+-|++.++|+.| ++.|..++++|||+....+
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~-----------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~-- 648 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI-----------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLA-- 648 (854)
T ss_pred hcCeEEEEecCCcccCCccc-----------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHH--
Confidence 35789999999999965211 125668999999998 7789999999999886444
Q ss_pred HHHHHH---CCCCCCCeEEee
Q 028215 187 EKNLLF---AGYSDWKKLFLR 204 (212)
Q Consensus 187 ~~nL~~---~G~~~~~~Lilr 204 (212)
+++.. .++-.-...++|
T Consensus 649 -~~f~~~~~l~laaEHG~~ir 668 (854)
T PLN02205 649 -DWFSPCEKLGIAAEHGYFLR 668 (854)
T ss_pred -HHhCCCCCeEEEEeCCEEEE
Confidence 55533 233333344555
No 141
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.30 E-value=0.00042 Score=54.81 Aligned_cols=92 Identities=18% Similarity=0.114 Sum_probs=63.0
Q ss_pred ceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHH--hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVD--LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~--~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
.+|+||.|||++|.-..-.- ..||..-+-+.-.. ..+..+.|.+.++++.++..|+-+..+|=..+. ...+
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl----~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~---kA~~ 73 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSL----EPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFED---KAIK 73 (164)
T ss_pred CcEEEeCCCcccccccchhc----CCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchH---HHHH
Confidence 37999999999985321110 12332111111111 124578999999999999999999999887764 5668
Q ss_pred HHHHCCCCCCCeEEeecCCCc
Q 028215 189 NLLFAGYSDWKKLFLRYRNRY 209 (212)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~ 209 (212)
.|+.+|+..|++.+.-.|-.|
T Consensus 74 aLral~~~~yFhy~ViePhP~ 94 (164)
T COG4996 74 ALRALDLLQYFHYIVIEPHPY 94 (164)
T ss_pred HHHHhchhhhEEEEEecCCCh
Confidence 899999999988777655544
No 142
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00061 Score=60.99 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=66.8
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhc-CCCCChhHHHHHHHHHHCC-CeEEEEcCCChhchHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLA-KAPALPASLTFYKELKQLG-FKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~-~~~~~pg~lell~~Lk~~G-~kI~~vTgR~~~~~~~T~ 187 (212)
.-.+|-|||+|+..+--- - -....|+.|.... .-+++||+..+|+.|.+.| ..|+|+|+++.....-..
T Consensus 161 ~igiISDiDDTV~~T~V~-----~----~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~ 231 (373)
T COG4850 161 GIGIISDIDDTVKVTGVT-----E----GPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQ 231 (373)
T ss_pred ceeeeeccccceEecccc-----c----chHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHH
Confidence 447899999999976210 0 0124577777764 4689999999999999999 999999999998877777
Q ss_pred HHHHHCCCCCCCeEEeec
Q 028215 188 KNLLFAGYSDWKKLFLRY 205 (212)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~ 205 (212)
+.+.+.+|| +.-++||.
T Consensus 232 efi~~~~~P-~GPl~L~~ 248 (373)
T COG4850 232 EFITNRNFP-YGPLLLRR 248 (373)
T ss_pred HHHhcCCCC-CCchhHhh
Confidence 788888899 56677763
No 143
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.00045 Score=60.51 Aligned_cols=75 Identities=17% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-CCeEEEEcCCChhchHH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNT 185 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G~kI~~vTgR~~~~~~~ 185 (212)
..++.+++||.||||.+-.++ ...+++.++++++|+.|.++ ...++++|||+....+
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~- 72 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELE- 72 (266)
T ss_pred cccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHH-
Confidence 347889999999999975331 12358999999999999999 4579999999986444
Q ss_pred HHHHHH--HCCCCCCCeEEeec
Q 028215 186 TEKNLL--FAGYSDWKKLFLRY 205 (212)
Q Consensus 186 T~~nL~--~~G~~~~~~Lilr~ 205 (212)
.++. ..|+-+......|.
T Consensus 73 --~~~~v~~i~l~aehGa~~r~ 92 (266)
T COG1877 73 --RLFGVPGIGLIAEHGAEVRD 92 (266)
T ss_pred --HhcCCCCccEEEecceEEec
Confidence 3443 23334445566653
No 144
>PLN02811 hydrolase
Probab=97.18 E-value=0.0012 Score=55.20 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEE
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
..+++||+.++|+.|+++|++++++||...... +...++..|+..|.+.+
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~--~~~~~~~~~l~~~f~~i 125 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHF--DLKTQRHGELFSLMHHV 125 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhH--HHHHcccHHHHhhCCEE
Confidence 567899999999999999999999999876432 22233334555554333
No 145
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.16 E-value=0.0023 Score=56.44 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=56.5
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
..+..||||+|+||+.... ..-.+.|.+.+-+..|+++|.-+++=|.-.+.+..
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~--- 173 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVR--- 173 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------------------ccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHH---
Confidence 3567999999999996421 01145688899999999999999999988776544
Q ss_pred HHHHHCCCCCCCeEEeec
Q 028215 188 KNLLFAGYSDWKKLFLRY 205 (212)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~ 205 (212)
+.|++.|+++++.+++-+
T Consensus 174 ~sl~~~~L~~~Fd~ii~~ 191 (297)
T PF05152_consen 174 HSLKELKLEGYFDIIICG 191 (297)
T ss_pred HHHHHhCCccccEEEEeC
Confidence 788888999988877754
No 146
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.15 E-value=0.00057 Score=67.36 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=46.1
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-CCeEEEEcCCChhchHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G~kI~~vTgR~~~~~~~T 186 (212)
.+++.++||+||||++.... .....+-+.+.+.|+.|.++ |+.|+++|||+....+
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~---------------------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~-- 546 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD---------------------PELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLE-- 546 (726)
T ss_pred ccceEEEEecCccccCCCCC---------------------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHH--
Confidence 35789999999999975210 01235678999999999995 9999999999975433
Q ss_pred HHHHHHCC
Q 028215 187 EKNLLFAG 194 (212)
Q Consensus 187 ~~nL~~~G 194 (212)
+++...+
T Consensus 547 -~~~~~~~ 553 (726)
T PRK14501 547 -RWFGDLP 553 (726)
T ss_pred -HHhCCCC
Confidence 4444333
No 147
>PLN02151 trehalose-phosphatase
Probab=97.13 E-value=0.001 Score=60.55 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
..++.++++|+||||+.-.+ ....+.+-|++++.|+.|. ++.+++++|||+.....
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~---------------------~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~ 150 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVD---------------------DPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCREKVS 150 (354)
T ss_pred cCCceEEEEecCccCCCCCC---------------------CcccccCCHHHHHHHHHHh-cCCCEEEEECCCHHHHH
Confidence 34677899999999994211 0123468899999999999 55799999999976433
No 148
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.13 E-value=0.00067 Score=58.02 Aligned_cols=51 Identities=29% Similarity=0.383 Sum_probs=39.2
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-CCeEEEEcCCCh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNE 180 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G~kI~~vTgR~~ 180 (212)
++.+++||+||||....+ . ...+.+-|++.+.|+.|.++ +..|+++|||+.
T Consensus 2 ~~~~l~lD~DGTL~~~~~---------~------------p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP---------D------------PDAAVVSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred CcEEEEEecCccccCCcC---------C------------CcccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 467899999999996411 0 01246789999999999887 577899999975
No 149
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.04 E-value=0.0027 Score=54.05 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
+.++.||+.++|++|+++|++++++||.+...
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~ 124 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA 124 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 45799999999999999999999999998653
No 150
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.02 E-value=0.0018 Score=55.03 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=55.5
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
.+.+++++||-|||... ..++||+.|.++.|+..+.+|=|+||.+...+....
T Consensus 5 ~~v~gvLlDlSGtLh~e---------------------------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~ 57 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIE---------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLH 57 (262)
T ss_pred cccceEEEeccceEecc---------------------------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHH
Confidence 35789999999999864 248999999999999999999999999988777788
Q ss_pred HHHHHCCCCC
Q 028215 188 KNLLFAGYSD 197 (212)
Q Consensus 188 ~nL~~~G~~~ 197 (212)
+.|.+.||.-
T Consensus 58 ~rL~rlgf~v 67 (262)
T KOG3040|consen 58 ERLQRLGFDV 67 (262)
T ss_pred HHHHHhCCCc
Confidence 8999999974
No 151
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.02 E-value=0.0032 Score=53.88 Aligned_cols=87 Identities=21% Similarity=0.388 Sum_probs=62.1
Q ss_pred CCCceEEEecCCCCCCC-hhhHhhhcCCCC--------CCCHHHHHHHHHh-------------------cCCCCChhHH
Q 028215 108 DGKDAWVFDIDETLLSN-LPYYAAHGFGSE--------IFNEDAFDEWVDL-------------------AKAPALPASL 159 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn-~~~~~~~~~g~~--------~~~~~~~~~wv~~-------------------~~~~~~pg~l 159 (212)
..+-.++||.|.|++|- +..|.....+.. .|....|++++.+ ...|..||+.
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv 90 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMV 90 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHH
Confidence 35668999999999974 333332222211 1222347777752 4679999999
Q ss_pred HHHHHHHHCCC-eEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 160 TFYKELKQLGF-KIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 160 ell~~Lk~~G~-kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
++++.+++.|. .++++|....-..+ ++|+++|+.+
T Consensus 91 ~lik~~ak~g~~eliIVSDaNsfFIe---~~Lea~~~~d 126 (256)
T KOG3120|consen 91 RLIKSAAKLGCFELIIVSDANSFFIE---EILEAAGIHD 126 (256)
T ss_pred HHHHHHHhCCCceEEEEecCchhHHH---HHHHHccHHH
Confidence 99999999995 99999998776544 7999999864
No 152
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.01 E-value=0.0013 Score=61.15 Aligned_cols=76 Identities=25% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
...+.||+|||||+.-+... .. .+ -..++.=-.-|+.+++.....+||+|.++|+|+-.+...|.
T Consensus 373 ~n~kiVVsDiDGTITkSD~~-Gh-v~-------------~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTr 437 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDAL-GH-VK-------------QMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTR 437 (580)
T ss_pred CCCcEEEEecCCcEEehhhH-HH-HH-------------HHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhh
Confidence 35778999999999966322 11 00 01122223568889999999999999999999998888887
Q ss_pred HHHH---HCCCCCC
Q 028215 188 KNLL---FAGYSDW 198 (212)
Q Consensus 188 ~nL~---~~G~~~~ 198 (212)
..|+ +.|+.-+
T Consensus 438 sylrnieQngykLp 451 (580)
T COG5083 438 SYLRNIEQNGYKLP 451 (580)
T ss_pred hHHHhhhhcCccCC
Confidence 7664 4566544
No 153
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0015 Score=54.15 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=52.1
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh--------
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF-------- 181 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~-------- 181 (212)
.+++++|-||||..-.+-|. .+ +++| ...||+.+.+..|++.|++++++||-+.-
T Consensus 5 ~k~lflDRDGtin~d~~~yv--------~~---~~~~------~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~ 67 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV--------DS---LDDF------QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEA 67 (181)
T ss_pred CcEEEEcCCCceecCCCccc--------Cc---HHHh------ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHH
Confidence 68999999999986533110 11 2222 78999999999999999999999995421
Q ss_pred c----hHHHHHHHHHCCCCCCCeEEe
Q 028215 182 Q----RNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 182 ~----~~~T~~nL~~~G~~~~~~Lil 203 (212)
. -+.....|+..|.. .+.++.
T Consensus 68 ~f~~~~~~m~~~l~~~gv~-id~i~~ 92 (181)
T COG0241 68 DFDKLHNKMLKILASQGVK-IDGILY 92 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEE
Confidence 1 12234566777864 444443
No 154
>PLN02382 probable sucrose-phosphatase
Probab=96.78 E-value=0.0046 Score=57.30 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=42.7
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
..+..|+.||||||+++.. . +....+....+++++.++|+.++++|||+.....
T Consensus 7 ~~~~lI~sDLDGTLL~~~~---~--------------------~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~--- 60 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDHHD---P--------------------ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYK--- 60 (413)
T ss_pred CCCEEEEEcCCCcCcCCCC---c--------------------cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHH---
Confidence 3456888899999997510 0 0011123345557889999999999999975433
Q ss_pred HHHHHCCCCCCC
Q 028215 188 KNLLFAGYSDWK 199 (212)
Q Consensus 188 ~nL~~~G~~~~~ 199 (212)
+-++..++...+
T Consensus 61 ~l~~~~~l~~p~ 72 (413)
T PLN02382 61 ELRKEKPLLTPD 72 (413)
T ss_pred HHHHhCCCCCCC
Confidence 445556665443
No 155
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0022 Score=52.60 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=62.4
Q ss_pred eEEEecCCCCCCChhhHhh---hcCC-------CCCC--------CHHHHHHHHHhcC------CCCChhHHHHHHHHHH
Q 028215 112 AWVFDIDETLLSNLPYYAA---HGFG-------SEIF--------NEDAFDEWVDLAK------APALPASLTFYKELKQ 167 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~---~~~g-------~~~~--------~~~~~~~wv~~~~------~~~~pg~lell~~Lk~ 167 (212)
-+.+|||||+.+-. ++.. ..|. ...| ..+.+.+|....+ +..-.++...+..+++
T Consensus 8 ~~ciDIDGtit~~~-t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e 86 (194)
T COG5663 8 RCCIDIDGTITDDP-TFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKE 86 (194)
T ss_pred heeeccCCceecCc-ccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 46799999998742 2221 0011 0112 2466778877532 3445566677777776
Q ss_pred CCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEeec
Q 028215 168 LGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRY 205 (212)
Q Consensus 168 ~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr~ 205 (212)
+ .+++++|+|.......|-.||....++ |++|.+-+
T Consensus 87 ~-~~L~~itar~~dl~~iT~~~l~~q~ih-~~~l~i~g 122 (194)
T COG5663 87 E-HRLIYITARKADLTRITYAWLFIQNIH-YDHLEIVG 122 (194)
T ss_pred h-ceeeeeehhhHHHHHHHHHHHHHhccc-hhhhhhhc
Confidence 6 799999999999889999999999999 77776543
No 156
>PTZ00445 p36-lilke protein; Provisional
Probab=96.71 E-value=0.0024 Score=54.21 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=59.5
Q ss_pred hHHHHhhccCccccccHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHH---H
Q 028215 72 VEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWV---D 148 (212)
Q Consensus 72 ~~~v~~y~~~~~Y~~D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv---~ 148 (212)
.+.++.|..++++. ...--+.|..+.+.++. .|.++|++|+|-||+.- | -|| |.+.. .
T Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~---~GIk~Va~D~DnTlI~~------H-sgG-------~~~~~~~~~ 70 (219)
T PTZ00445 10 HDAFKEYIESGLFD--HLNPHESADKFVDLLNE---CGIKVIASDFDLTMITK------H-SGG-------YIDPDNDDI 70 (219)
T ss_pred HHHHHHHHHhcccc--cCCHHHHHHHHHHHHHH---cCCeEEEecchhhhhhh------h-ccc-------ccCCCcchh
Confidence 34566777776664 23333455555555544 47999999999999962 1 111 11110 0
Q ss_pred hcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 149 LAKAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 149 ~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.--..+.|...++++.|++.|++|++||=+++.
T Consensus 71 ~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 71 RVLTSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred hhhccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 001246788999999999999999999988764
No 157
>PLN02580 trehalose-phosphatase
Probab=96.65 E-value=0.0039 Score=57.39 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
..++.+++||.||||..-.+ + -..+.+-|++.+.|+.|.+. .+++++|||+.....
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~------------~---------Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~ 171 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVD------------D---------PDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVY 171 (384)
T ss_pred hcCCeEEEEecCCccCCCCC------------C---------cccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHH
Confidence 34577899999999985311 0 12357789999999999988 589999999976443
No 158
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.54 E-value=0.0071 Score=50.72 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T 186 (212)
..+++.+|+|+||||++...- .. ....-..|++.+||+.+.+ .+.|++-|+......+.
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~--~~-----------------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~- 76 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSP--AE-----------------TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEI- 76 (195)
T ss_pred CCCCcEEEEeCCCceEccccc--CC-----------------CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHH-
Confidence 467899999999999974110 00 1113568999999999988 69999999998765553
Q ss_pred HHHHHHCCC
Q 028215 187 EKNLLFAGY 195 (212)
Q Consensus 187 ~~nL~~~G~ 195 (212)
.+...|+
T Consensus 77 --~l~~l~~ 83 (195)
T TIGR02245 77 --KMTELGV 83 (195)
T ss_pred --HHHHhcc
Confidence 4444444
No 159
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.51 E-value=0.0031 Score=54.00 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=40.7
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
-+..|+.|+||||+.. + |++ ..+...+.+|++.|++|+++|+++........+
T Consensus 6 ~~~lIFtDlD~TLl~~-------~-----ye~---------------~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~ 58 (274)
T COG3769 6 MPLLIFTDLDGTLLPH-------S-----YEW---------------QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQK 58 (274)
T ss_pred cceEEEEcccCcccCC-------C-----CCC---------------CccchHHHHHHHcCCeEEEeccchHHHHHHHHH
Confidence 3668899999999972 1 110 123567889999999999999999865553333
Q ss_pred HHHHCCCC
Q 028215 189 NLLFAGYS 196 (212)
Q Consensus 189 nL~~~G~~ 196 (212)
..|++
T Consensus 59 ---~l~v~ 63 (274)
T COG3769 59 ---SLGVQ 63 (274)
T ss_pred ---hcCCC
Confidence 34555
No 160
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.40 E-value=0.011 Score=48.50 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=38.3
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCC--eEEEEcCCC
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGF--KIFLLTGRN 179 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~--kI~~vTgR~ 179 (212)
..|.+++|||.|.||..-. +..+-|...+.++++++.+. +|.++||+.
T Consensus 38 ~~Gik~li~DkDNTL~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY-------------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred hcCceEEEEcCCCCCCCCC-------------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4689999999999998531 12566788888999998876 499999984
No 161
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=96.17 E-value=0.0029 Score=53.68 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=28.9
Q ss_pred EEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCC-CeEEEEcCCChhc
Q 028215 114 VFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLG-FKIFLLTGRNEFQ 182 (212)
Q Consensus 114 vfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G-~kI~~vTgR~~~~ 182 (212)
+||.||||..-.+. ...+.+.|++.++|+.|.+.. ..|+++|||+...
T Consensus 1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 58999999964210 123578999999999999884 4799999999754
No 162
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.12 E-value=0.0068 Score=52.18 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
+..++.|+|||+++..+ .......++++.....++.++++|||+-.... +-
T Consensus 2 ~~ll~sDlD~Tl~~~~~--------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~---~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD--------------------------EALARLEELLEQQARPEILFVYVTGRSLESVL---RL 52 (247)
T ss_dssp SEEEEEETBTTTBHCHH--------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHH---HH
T ss_pred CEEEEEECCCCCcCCCH--------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHH---HH
Confidence 46789999999992211 11222334444445778999999999976443 67
Q ss_pred HHHCCCCCCCeEEe
Q 028215 190 LLFAGYSDWKKLFL 203 (212)
Q Consensus 190 L~~~G~~~~~~Lil 203 (212)
+++.+++.-+-+|.
T Consensus 53 ~~~~~l~~Pd~~I~ 66 (247)
T PF05116_consen 53 LREYNLPQPDYIIT 66 (247)
T ss_dssp HHHCT-EE-SEEEE
T ss_pred HHhCCCCCCCEEEe
Confidence 77778775444443
No 163
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=95.80 E-value=0.03 Score=49.43 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 140 EDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 140 ~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.+...+.+.+...++.||+.+|++.|+++|++++++||..... ...-|+++|+.
T Consensus 108 ~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~---Ie~vL~~lgl~ 161 (277)
T TIGR01544 108 KAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV---LEEVLRQAGVY 161 (277)
T ss_pred HHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH---HHHHHHHcCCC
Confidence 3344444444678999999999999999999999999998753 44677778874
No 164
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.65 E-value=0.013 Score=59.44 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=52.6
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-CCeEEEEcCCChhchHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G~kI~~vTgR~~~~~~~T 186 (212)
.++.+++||.||||..-.+.-.. .-.-+.+..+.+.|+++++|+.|.+. +..|+++|||+....+
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~------------~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le-- 654 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGR------------RGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLD-- 654 (934)
T ss_pred ccceEEEEecCceeccCCCCccc------------ccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHH--
Confidence 35679999999999964221000 00001112356779999999999976 7899999999986544
Q ss_pred HHHHHHCC--CCCCCeEEeec
Q 028215 187 EKNLLFAG--YSDWKKLFLRY 205 (212)
Q Consensus 187 ~~nL~~~G--~~~~~~Lilr~ 205 (212)
+++...+ +-+-...++|.
T Consensus 655 -~~fg~~~L~LaAEHG~~~R~ 674 (934)
T PLN03064 655 -ENFGEFDMWLAAENGMFLRH 674 (934)
T ss_pred -HHhCCCCceEEeeCCeEEec
Confidence 5664433 33223455553
No 165
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.40 E-value=0.028 Score=56.24 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=50.2
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-CCeEEEEcCCChhchHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G~kI~~vTgR~~~~~~~T~ 187 (212)
++.+++||.||||..-.+. +- ....+.+.|++.++|+.|.+. +..|+++|||+....+
T Consensus 506 ~~rll~LDyDGTL~~~~~~---------~~---------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~--- 564 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNS---------QI---------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILD--- 564 (797)
T ss_pred cCeEEEEecCccccCCCCC---------cc---------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHH---
Confidence 5679999999999942110 00 012246789999999999876 7899999999886444
Q ss_pred HHHHHCC--CCCCCeEEee
Q 028215 188 KNLLFAG--YSDWKKLFLR 204 (212)
Q Consensus 188 ~nL~~~G--~~~~~~Lilr 204 (212)
+++...+ +-+-....+|
T Consensus 565 ~~~~~~~l~l~aeHG~~~r 583 (797)
T PLN03063 565 KNFGEYNIWLAAENGMFLR 583 (797)
T ss_pred HHhCCCCCcEEEeCCEEEe
Confidence 5664433 3322345555
No 166
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=95.20 E-value=0.07 Score=45.71 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCCCCCChhhHhh-----------hcCC---------------------------CCCCCHHHHHHHHH
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAA-----------HGFG---------------------------SEIFNEDAFDEWVD 148 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~-----------~~~g---------------------------~~~~~~~~~~~wv~ 148 (212)
+.+.+.++||||+||.--+.-.+. ..+| +..++.+.+.+++.
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~ 91 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVH 91 (244)
T ss_pred CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhh
Confidence 456789999999999854321111 1122 12345667777776
Q ss_pred h----cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC-CeEEe
Q 028215 149 L----AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW-KKLFL 203 (212)
Q Consensus 149 ~----~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~-~~Lil 203 (212)
. ...+|=+-.+++|-.|+.++ ..+.||.++.+ .++.|++.|+.+- +.++.
T Consensus 92 ~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H---A~r~Lk~LGieDcFegii~ 146 (244)
T KOG3109|consen 92 GRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVH---AIRILKKLGIEDCFEGIIC 146 (244)
T ss_pred ccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHH---HHHHHHHhChHHhccceeE
Confidence 4 34778888899999999887 66778888754 4488999999873 44443
No 167
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.11 Score=43.50 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=32.6
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
..+..-||..++++..++++++++++|+-.........+
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe 108 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFE 108 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHH
Confidence 457888999999999999999999999988766554333
No 168
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.67 E-value=0.11 Score=45.01 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=33.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
-....++++++++|+.+|..+.++|+-+...+ .-|...|+..|
T Consensus 112 ~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~----~~l~~~~l~~~ 154 (237)
T KOG3085|consen 112 WKYLDGMQELLQKLRKKGTILGIISNFDDRLR----LLLLPLGLSAY 154 (237)
T ss_pred ceeccHHHHHHHHHHhCCeEEEEecCCcHHHH----HHhhccCHHHh
Confidence 35678999999999999999999999887654 24555566443
No 169
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=94.63 E-value=0.091 Score=47.36 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC----CCeEEEEcCCCh
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL----GFKIFLLTGRNE 180 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~----G~kI~~vTgR~~ 180 (212)
..+-+++|||||+|+.- ..++||+.+.++.|.++ .++.+|+||-..
T Consensus 33 ~~~fgfafDIDGVL~RG---------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg 82 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFRG---------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGG 82 (389)
T ss_pred CCceeEEEecccEEEec---------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCC
Confidence 45668999999999852 27899999999999988 899999999653
No 170
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=92.91 E-value=0.18 Score=45.80 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=32.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHC
Q 028215 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~ 193 (212)
..+.||+.++|++|+++|++++++||++....+ ..|+.+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~---~im~~l 221 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTD---KGMKYL 221 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHH---HHHHHh
Confidence 566999999999999999999999999886444 556554
No 171
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.61 E-value=0.13 Score=41.75 Aligned_cols=44 Identities=34% Similarity=0.431 Sum_probs=36.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..++.|++.++++.|++.|++++++||..+. .+....+..|+..
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~---~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNES---TASAIAKQLGIFD 168 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHH---HHHHHHHHTTSCS
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccccc---ccccccccccccc
Confidence 4588999999999999999999999998775 3345677889853
No 172
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=92.39 E-value=0.21 Score=47.70 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCCCChhHHHHHHHHHHCCC-eEEEEcCCChhchHHHHHHHHHCCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGF-KIFLLTGRNEFQRNTTEKNLLFAGYSDWK 199 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~-kI~~vTgR~~~~~~~T~~nL~~~G~~~~~ 199 (212)
..++.||+.+++++|+++|+ +++++||.++. .+...+++.|+..+.
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~---~a~~i~~~lgi~~~f 406 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRA---VAERVARELGIDEVH 406 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHH---HHHHHHHHcCChhhh
Confidence 46899999999999999999 99999999875 455778888987653
No 173
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=91.90 E-value=0.3 Score=46.81 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=38.5
Q ss_pred CCCCChhHHHHHHHHHHCC-CeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLG-FKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G-~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
+.++.||+.+++++|+++| ++++++||.++. .+..-++++|+..+
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~---~a~~i~~~lgi~~~ 427 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRS---AAEAVAAELGIDEV 427 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHH---HHHHHHHHhCCCee
Confidence 5689999999999999999 999999999875 34467788899754
No 174
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.98 E-value=1.2 Score=42.48 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=44.7
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+..++|.|+|+|+||+--. .+..+..+-... ..++.+++...+++++.|+++|+-++++|-..+.
T Consensus 219 g~~kK~LVLDLDNTLWGGV--IGedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~ 283 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGV--IGEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEK 283 (574)
T ss_pred CcccceEEEecCCcccccc--cccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCchh
Confidence 5578999999999998531 111111111010 1134467778899999999999999999988775
No 175
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=89.69 E-value=0.94 Score=36.52 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCceEEEecCCCCCCChhhHhhh-cCCCCCCCH-HHHHHHHH----------------h----cCCCCChhHHHHHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAH-GFGSEIFNE-DAFDEWVD----------------L----AKAPALPASLTFYKELK 166 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~-~~g~~~~~~-~~~~~wv~----------------~----~~~~~~pg~lell~~Lk 166 (212)
.++.+.+|||.||.+...-|... .+-..++-. +...-|-. + ......|++.+.+++|-
T Consensus 2 ~kk~iaIDmD~vLadll~ewv~~~N~y~D~~lk~~di~gwdik~yv~~~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt 81 (180)
T COG4502 2 NKKTIAIDMDTVLADLLREWVKRYNIYKDKLLKMSDIKGWDIKNYVKPECGKIYDILKEPHFFRNLGVQPFAQTVLKELT 81 (180)
T ss_pred CCceEEeeHHHHHHHHHHHHHHHhhhccccCcChHhhcccchhhccCccCCeeeeeccCcchhhhcCccccHHHHHHHHH
Confidence 36789999999999876655432 111111111 11111111 0 23577899999999998
Q ss_pred HCCCeEEEEcCC--ChhchHHHHHHHH-HCCCCCCCeEEeec
Q 028215 167 QLGFKIFLLTGR--NEFQRNTTEKNLL-FAGYSDWKKLFLRY 205 (212)
Q Consensus 167 ~~G~kI~~vTgR--~~~~~~~T~~nL~-~~G~~~~~~Lilr~ 205 (212)
+. +.|.++|.. .....+.--+||. .+-|-.+.++++-+
T Consensus 82 ~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCg 122 (180)
T COG4502 82 SI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCG 122 (180)
T ss_pred hh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEec
Confidence 77 999999987 3344556667874 46776777777654
No 176
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=89.38 E-value=0.65 Score=44.71 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..++.|++.+++++|+++|++++++||.++.. ....+++.|++
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~---a~~ia~~lgi~ 445 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT---AKAVAKELGIN 445 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHH---HHHHHHHcCCc
Confidence 35789999999999999999999999998753 34566778886
No 177
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=88.55 E-value=0.37 Score=44.42 Aligned_cols=59 Identities=27% Similarity=0.356 Sum_probs=41.9
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
.+.+.+.||+|||+++|.+- ..|. -++.+| ....|.+.+=++.|.+.|++++|.|+...
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg---~vf~---~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~ 131 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSG---KVFP---KGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNG 131 (422)
T ss_pred CCcceEEEecCCceeecCCc---ceee---ccCccc--------eeeccccchhhhhhccCCeEEEEEecccc
Confidence 46789999999999998541 1111 112233 25567777778899999999999998653
No 178
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=87.47 E-value=0.34 Score=39.16 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=16.0
Q ss_pred ceEEEecCCCCCCChhhH
Q 028215 111 DAWVFDIDETLLSNLPYY 128 (212)
Q Consensus 111 ~avvfDIDgTLldn~~~~ 128 (212)
++|+||.||||+++.+.+
T Consensus 2 ~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp SEEEEECCTTTBESHHEE
T ss_pred eEEEEecCCCcccCeEEE
Confidence 689999999999987766
No 179
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=86.52 E-value=3.4 Score=39.44 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH-CCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF-AGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~-~G~~ 196 (212)
..|.+.+ .++++|.. +++|+.++...+ .++++ .|+.
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Ve---pfa~~~LGid 147 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVE---PFVKTFLGAD 147 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHH---HHHHHcCCCC
Confidence 4555554 44567754 999999986444 56665 5777
No 180
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=84.06 E-value=1.7 Score=37.05 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=36.4
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
..-.+.||+||||.-. .....|.+.++|+.|+.+ +.|.++-|++-.
T Consensus 10 ~~~l~lfdvdgtLt~~--------------------------r~~~~~e~~~~l~~lr~~-v~ig~VggsDl~ 55 (252)
T KOG3189|consen 10 EETLCLFDVDGTLTPP--------------------------RQKVTPEMLEFLQKLRKK-VTIGFVGGSDLS 55 (252)
T ss_pred CceEEEEecCCccccc--------------------------cccCCHHHHHHHHHHhhh-eEEEEeecHHHH
Confidence 3447899999999853 126778999999998877 899999998743
No 181
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=83.70 E-value=2.2 Score=42.52 Aligned_cols=44 Identities=25% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..++.|++.+.+++|+++|++++++||.++. .+....++.|+..
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~---~a~~ia~~lgi~~ 609 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPR---AAAAIAGELGIDF 609 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHcCCCe
Confidence 4589999999999999999999999998775 4446778889874
No 182
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=83.20 E-value=1.4 Score=38.68 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=69.8
Q ss_pred hHHHHhhccC---ccccccHHHHHHHHHHHHhhccccC----CCCCceEEEecCCCCCCChh--hHhhhcCCCCCCCHHH
Q 028215 72 VEFVQKYMTG---EHYLSDSEIVSGYSLKHAKSANVSA----GDGKDAWVFDIDETLLSNLP--YYAAHGFGSEIFNEDA 142 (212)
Q Consensus 72 ~~~v~~y~~~---~~Y~~D~~~v~~~A~~y~~~~~~~~----~~~~~avvfDIDgTLldn~~--~~~~~~~g~~~~~~~~ 142 (212)
.+|+..|-.. +....|+..+++..+.-+.-+.... .+..--|.||=|++|.+... .|...+ -+.
T Consensus 76 ~~Yl~af~v~LFLSan~~DV~~Ai~~G~~Aa~v~~~~~~~~~~~~qlRIAFDgDaVLfsDesE~vy~~~G-------L~~ 148 (264)
T PF06189_consen 76 YPYLKAFNVDLFLSANEDDVQEAIDAGIPAATVLPSPPDDDESDDQLRIAFDGDAVLFSDESERVYQEQG-------LEA 148 (264)
T ss_pred HHHHHHhCCceEeeCCHHHHHHHHHcCCCcEEeecCCCCCCCCCCceEEEEcCCeEeecCcchHhHHhcc-------HHH
Confidence 4566555433 2334466655554443222221110 13345799999999997533 333321 123
Q ss_pred HHHHHHhcC-C----CCChhHHHHHHHHHHC------CCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 143 FDEWVDLAK-A----PALPASLTFYKELKQL------GFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 143 ~~~wv~~~~-~----~~~pg~lell~~Lk~~------G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
|.+...... . -|+...++-|.+++++ -+++++||.|+...-+-.++-|+.-|+.--+-++|
T Consensus 149 F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFL 220 (264)
T PF06189_consen 149 FHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFL 220 (264)
T ss_pred HHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHh
Confidence 333333222 2 3445556666677655 37899999999665566778899888884333444
No 183
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=83.18 E-value=2.3 Score=40.58 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=24.9
Q ss_pred HHHHHHHCCCeEEEEcCCChhchHHHHHHHHH-CCCCC
Q 028215 161 FYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF-AGYSD 197 (212)
Q Consensus 161 ll~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~-~G~~~ 197 (212)
.++..++.| +++++|..++-.. +.+++. .|...
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmV---EpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMV---ERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHH---HHHHHHhcCCce
Confidence 556667788 9999999998644 468887 67763
No 184
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=82.79 E-value=0.19 Score=44.06 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=52.0
Q ss_pred CCCCceEEEecCCCCCCChhhHh---hhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhch
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYA---AHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQR 183 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~---~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~ 183 (212)
..+++.+|+|+||||..+..... ...|.- +..++.....--....|++-+|+..+-+. +.+++-|+..+...
T Consensus 86 ~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~----~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSSLNLKPIVNADFTV----PVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVYA 160 (262)
T ss_pred cCCCceEEEeCCCcccccccccCCCCCcceee----eeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHH
Confidence 46899999999999887652100 011110 00000000011135678999999888777 88888888888777
Q ss_pred HHHHHHHHH-CCC
Q 028215 184 NTTEKNLLF-AGY 195 (212)
Q Consensus 184 ~~T~~nL~~-~G~ 195 (212)
......|.. .|+
T Consensus 161 ~~v~D~LD~~~~i 173 (262)
T KOG1605|consen 161 DPLLDILDPDRKI 173 (262)
T ss_pred HHHHHHccCCCCe
Confidence 777777775 444
No 185
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=82.34 E-value=2.2 Score=43.96 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=35.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|+.|++.+.+++++++|+++.++|||+.... ..-.++.|+-
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta---~~ia~~~gi~ 608 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITA---KAIAKGVGII 608 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCCHHHH---HHHHHHcCCC
Confidence 469999999999999999999999999997533 3445566773
No 186
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=82.22 E-value=2.5 Score=42.90 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..|+.|++.+.++.|++.|+++.++||...... ..-.++.|+..+
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA---~~ia~~~Gi~~~ 570 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQETA---VSIARRLGMPSK 570 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCHHHH---HHHHHHcCCCCC
Confidence 358999999999999999999999999987533 345577788644
No 187
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=79.51 E-value=2.9 Score=41.40 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=35.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..++.|++.+.++.|++.|++++++||...... ..--++.|+..
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta---~~iA~~lGI~~ 487 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDNRLTA---AAIAAEAGVDD 487 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCCHHHH---HHHHHHcCCCE
Confidence 469999999999999999999999999876432 34556678864
No 188
>PRK10671 copA copper exporting ATPase; Provisional
Probab=79.44 E-value=3.4 Score=41.60 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=36.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..++.|++.+.++.|+++|++++++||.++.. +..-+++.|+..
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~---a~~ia~~lgi~~ 691 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT---ANAIAKEAGIDE 691 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCCE
Confidence 45889999999999999999999999988753 335667788864
No 189
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=77.68 E-value=5.9 Score=33.35 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=26.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRN 179 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~ 179 (212)
++++.|.+.+.+++.+++|.++++-|+-+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGS 129 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGS 129 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCC
Confidence 57899999999999999999999888765
No 190
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=76.47 E-value=3 Score=39.34 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~ 193 (212)
.-|.+..+|+.|++.|.+++++||++-...+.....+-..
T Consensus 184 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 184 KDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp --CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred CCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 3578899999999999999999999988777777777433
No 191
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=76.14 E-value=4.1 Score=40.73 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=35.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..|+.|++.+.++.|++.|+++.++||....... .--++.|+..
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~---~IA~~lGI~~ 483 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAIAK---ETARRLGLGT 483 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcCCCC
Confidence 3589999999999999999999999998875333 3445678863
No 192
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=76.01 E-value=4.1 Score=41.58 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
+.|+.|++.+.++.|++.|+++.++||..... +..-.++.|+..
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~t---A~~ia~~~gi~~ 578 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDNKET---AEAICRRIGIFS 578 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCCHHH---HHHHHHHcCCCC
Confidence 46899999999999999999999999987643 334556678753
No 193
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=73.46 E-value=3.5 Score=32.57 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=47.8
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCC--CCCCCHHHHHHHHHh-cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFG--SEIFNEDAFDEWVDL-AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNT 185 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g--~~~~~~~~~~~wv~~-~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~ 185 (212)
.++++.||+|=|++-- |-..+.. -.||- .+.-.. .+....+.+...|..|+++|++++.+|.....+...
T Consensus 4 ~p~~~~fdldytiwP~---~vdthl~~pfkP~k----~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~ 76 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPR---LVDTHLDYPFKPFK----CECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIAS 76 (144)
T ss_pred CCceeEEeccceeeeE---EEEecccccccccc----cCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHH
Confidence 5778889999888742 2111111 01110 000011 234567889999999999999999999988665443
Q ss_pred HHHHHHHCCCC
Q 028215 186 TEKNLLFAGYS 196 (212)
Q Consensus 186 T~~nL~~~G~~ 196 (212)
+-|+.+..+
T Consensus 77 --q~L~~fkvk 85 (144)
T KOG4549|consen 77 --QGLETFKVK 85 (144)
T ss_pred --HHHHHhccC
Confidence 445555444
No 194
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=73.46 E-value=5.8 Score=39.35 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
+.++.|++.+.+++|++.|++++++||-...... .--++.|+.+
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~---aIA~elGId~ 486 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDNPLTAA---AIAAEAGVDD 486 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcCCcE
Confidence 4688999999999999999999999997764322 3345678864
No 195
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=73.45 E-value=5.3 Score=39.57 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=35.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..++.|++.+.+++|++.|++++++||-...... .--++.|+.+
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~---aIA~elGI~~ 482 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNELTAA---TIAKEAGVDR 482 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcCCce
Confidence 4699999999999999999999999998774333 3335668864
No 196
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=71.95 E-value=6.2 Score=39.41 Aligned_cols=45 Identities=24% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..++.|++.+.+++|+++|++++++||-.+...+ .--++.|+..+
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~---~iA~~lGId~v 579 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDNRRTAE---AIAKELGIDEV 579 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHHHHcChHhh
Confidence 4689999999999999999999999998765333 34456687655
No 197
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=71.07 E-value=14 Score=32.24 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=61.5
Q ss_pred hhhHHHHhhccCccccccHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHh
Q 028215 70 RCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDL 149 (212)
Q Consensus 70 ~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~ 149 (212)
.|+-.+++|.+.+.|.+.++...+++.+- + .++.||..----+++-.| .|....+|+
T Consensus 218 r~kVEl~~gTeddeYLrkl~r~l~~sl~e---f------~Pd~VvYNAGTDiLeGDp------LG~L~ISp~-------- 274 (324)
T KOG1344|consen 218 RCKVELRNGTEDDEYLRKLKRCLMQSLAE---F------RPDMVVYNAGTDILEGDP------LGNLAISPE-------- 274 (324)
T ss_pred hheeeeecCCCchHHHHHHHHHHHHHHHh---h------CCcEEEEeCCCccccCCC------CCCeeeccc--------
Confidence 57667788888999999888888887652 2 234555543222333222 111111111
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCCh-----hchHHHHHHHHHCCCC
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNE-----FQRNTTEKNLLFAGYS 196 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~-----~~~~~T~~nL~~~G~~ 196 (212)
-.+.--...+...+++|++++.+|+-.- ......+.||..+|+-
T Consensus 275 ---Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGLi 323 (324)
T KOG1344|consen 275 ---GIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGLI 323 (324)
T ss_pred ---ccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhccc
Confidence 2233334568889999999999988542 2345677888888763
No 198
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=68.56 E-value=7.8 Score=39.40 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=34.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|+.|++.+.++.|++.|+++.++||-..... ..--++.|+.
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA---~aIA~~lGI~ 555 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNEIVT---ARICQEVGID 555 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHH---HHHHHHcCCC
Confidence 468999999999999999999999999776432 2344667886
No 199
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=68.23 E-value=8 Score=39.62 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=35.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
..|+.|++.+.++.|++.|+++.++||-...... .--++.|+..
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~---~iA~~~GI~~ 620 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNIDTAK---AIARNCGILT 620 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCChHHHH---HHHHHcCCCC
Confidence 4699999999999999999999999998764322 2335568863
No 200
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=67.39 E-value=8 Score=40.24 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=35.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|+.|++.+.++.|++.|+++.++||....... ..-++.|+.
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~---~iA~~~Gi~ 686 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETAK---AIAQEVGII 686 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHH---HHHHHcCCC
Confidence 4699999999999999999999999998875333 344567885
No 201
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=64.42 E-value=9.7 Score=39.55 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
+.|+.|++.+.++.|++.|+++.++||....... .--++.|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~---~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNPLTAV---HVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcCCC
Confidence 5689999999999999999999999999874322 234566884
No 202
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=64.07 E-value=9.9 Score=38.90 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|+.|++.+.++.|++.|+++.++||-...... .--++.|+.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~---~IA~~lGI~ 590 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSELVAA---KVCHEVGLD 590 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHHHcCCC
Confidence 4689999999999999999999999997764322 344667885
No 203
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=63.06 E-value=27 Score=36.47 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.2
Q ss_pred hHHHHHHHHH----HCCCeEEEEcCCChhchHHHHHHHHHCCCC--CCCeEEeec
Q 028215 157 ASLTFYKELK----QLGFKIFLLTGRNEFQRNTTEKNLLFAGYS--DWKKLFLRY 205 (212)
Q Consensus 157 g~lell~~Lk----~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~--~~~~Lilr~ 205 (212)
.+.++++.++ ...+-++++|||+-. .+.+-|++.|++ ..+-+|...
T Consensus 788 ~l~~~~~~~~~~~~~~~igfv~aTGR~l~---~~~~~l~~~~lp~~~PD~lI~~v 839 (1050)
T TIGR02468 788 IIKNIFEAVRKERMEGSSGFILSTSMTIS---EIQSFLKSGGLNPTDFDALICNS 839 (1050)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCCHH---HHHHHHHhCCCCCCCCCEEEeCC
Confidence 4456666665 234888999999875 455789999998 777777653
No 204
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=62.70 E-value=11 Score=38.50 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=34.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|+.|++.+.++.|++.|+++.++||-...... .--++.|+.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~---aIA~~lGI~ 590 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIVTA---KICREVGLE 590 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcCCC
Confidence 4689999999999999999999999998764322 344566885
No 205
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=62.21 E-value=36 Score=30.25 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
.+|...+++++|+++|+++++...
T Consensus 64 ~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 64 RFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEec
Confidence 467788999999999999987553
No 206
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=61.46 E-value=72 Score=29.72 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=32.3
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
+.+.|-||=|+||.+-- ..+ .+-..+..-+-.|-++|++|++||.-.-
T Consensus 146 ~L~LvTFDgDvTLY~DG----------~sl--------------~~d~pvi~~ii~LL~~gv~VgIVTAAGY 193 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDG----------ASL--------------EPDNPVIPRIIKLLRRGVKVGIVTAAGY 193 (408)
T ss_pred CceEEEEcCCcccccCC----------CCC--------------CCCchHHHHHHHHHhcCCeEEEEeCCCC
Confidence 67899999999999741 111 1222333334456689999999998653
No 207
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=60.34 E-value=15 Score=28.57 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=39.5
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
.-.++|=+||+-+-.- .+.++-+.++.|...++++++++.|+++.+.+-.-+
T Consensus 35 dV~iF~t~dG~~l~~K-------------------~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~~ 86 (120)
T COG2044 35 DVTIFFTMDGVTLVKK-------------------KVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSLK 86 (120)
T ss_pred ceEEEEEeccceeeee-------------------cchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchhh
Confidence 4467889999877431 123334457889999999999999999999987655
No 208
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=59.86 E-value=12 Score=27.73 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-.+.+++.++.++++|.+++.+|+.+..
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3467899999999999999999998765
No 209
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=59.77 E-value=10 Score=35.09 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
--|..+.++.+|+++|.+++++||+|-...+
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd 271 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVD 271 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhh
Confidence 3568889999999999999999999986554
No 210
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=59.64 E-value=14 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=29.1
Q ss_pred eEEEEcCCChhchHHHHHHHHHCCCCCCCeEEeecC
Q 028215 171 KIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRYR 206 (212)
Q Consensus 171 kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr~~ 206 (212)
+++++|+++........+.|+..|||. ..++||+-
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~-G~~~Lr~~ 35 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPA-GPLLLRDY 35 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCC-CceEcccC
Confidence 478999999988888888999999994 56888753
No 211
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=59.59 E-value=15 Score=34.48 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=29.2
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhch
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQR 183 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~ 183 (212)
..++.|++.+.++.|++.|+++.++||..+...
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a 377 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTA 377 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHH
Confidence 358999999999999999999999999887533
No 212
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=59.25 E-value=16 Score=34.27 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEeecCCCc
Q 028215 158 SLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRYRNRY 209 (212)
Q Consensus 158 ~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr~~~~~ 209 (212)
--.+++.|+++|+++-+-+..++. -.|.+.|..-|++||+-++...
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d~~------l~L~~~ge~~YD~LIif~~~~k 59 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADDES------LSLFKYGERLYDHLIIFPPSVK 59 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC------cchhhCChhhcceEEEeCCccc
Confidence 457899999999999999998743 3688999999999999876543
No 213
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=58.58 E-value=14 Score=27.57 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
--+.+.+.++.++++|.+++.+|+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 45788999999999999999999988754
No 214
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=57.02 E-value=23 Score=25.21 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 158 SLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 158 ~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..++.+.|.+.|++++ +|.- |.+.|++.|++
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~g-------Ta~~L~~~Gi~ 32 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGG-------TAKFLREAGLP 32 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccH-------HHHHHHHCCCc
Confidence 4567788888888884 5553 33567777776
No 215
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=56.48 E-value=24 Score=36.05 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK 199 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~ 199 (212)
..||.|++.+.++.+++.|+.|..+||-...... .--++.|+...+
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~---AI~r~iGi~~~~ 627 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNKETAE---AIAREIGIFSED 627 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHH---HHHHHhCCCcCC
Confidence 3699999999999999999999999998875333 334566877654
No 216
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.34 E-value=17 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+.+.++++.++++|.+++.+|++...
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 56789999999999999999998764
No 217
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=54.97 E-value=19 Score=26.67 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.....+.++.++++|.+++.+|+.+..
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 467789999999999999999998765
No 218
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=54.63 E-value=27 Score=31.34 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHCCC--eEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 155 LPASLTFYKELKQLGF--KIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~--kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
-..+++++...+++|. +|++.=+||..+-..+.+.|+++|++.
T Consensus 129 S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 129 SKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred cHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCce
Confidence 4578899999999985 999999999999899999999999884
No 219
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=54.06 E-value=31 Score=29.03 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=36.1
Q ss_pred hhHHHHHHHH-HHCCCeEEEEcCCChh-chHHHHHHHHHCCCCCCCeEEeecC
Q 028215 156 PASLTFYKEL-KQLGFKIFLLTGRNEF-QRNTTEKNLLFAGYSDWKKLFLRYR 206 (212)
Q Consensus 156 pg~lell~~L-k~~G~kI~~vTgR~~~-~~~~T~~nL~~~G~~~~~~Lilr~~ 206 (212)
..++++.+.- ++..--.+++|||.+. ..+...+.|...|+. ++.++||+.
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~-Fd~v~LKp~ 108 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE-FDAVCLKPE 108 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC-ccEEEeCcc
Confidence 4455555443 3556777899999974 455555677888998 899999987
No 220
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.84 E-value=46 Score=29.55 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~ 195 (212)
..+|.-.+++++|+++|+++++...-.-......-+.+.+.|+
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 3456778999999999999998764221111122345666665
No 221
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=53.43 E-value=17 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 45778999999999999999999988753
No 222
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=53.26 E-value=19 Score=27.05 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
-.+.+.+.++.++++|.+++.+|+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 35678999999999999999999987753
No 223
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.43 E-value=33 Score=30.10 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=20.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
..|...+++++|+++|+++++..-
T Consensus 72 ~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 72 LFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeC
Confidence 457889999999999999998764
No 224
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=51.07 E-value=20 Score=28.51 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCC
Q 028215 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN 179 (212)
Q Consensus 112 avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~ 179 (212)
..++|+||.+++-.. ...+ ..-++++.+.+.|.+++++|--.
T Consensus 45 iAildL~G~~l~l~S--------~R~~------------------~~~evi~~I~~~G~PviVAtDV~ 86 (138)
T PF04312_consen 45 IAILDLDGELLDLKS--------SRNM------------------SRSEVIEWISEYGKPVIVATDVS 86 (138)
T ss_pred EEEEecCCcEEEEEe--------ecCC------------------CHHHHHHHHHHcCCEEEEEecCC
Confidence 568999999997521 1112 23455666677777777777744
No 225
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=50.95 E-value=31 Score=31.87 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
.+-.+|+|+-++|+...--|. .+ | .....||+--|+..+. +-++|++.|+..........+
T Consensus 188 p~yTLVleledvLVhpdws~~-tG----------w-------Rf~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d 248 (393)
T KOG2832|consen 188 PPYTLVLELEDVLVHPDWSYK-TG----------W-------RFKKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLD 248 (393)
T ss_pred CCceEEEEeeeeEeccchhhh-cC----------c-------eeccCchHHHHHHhhc-ccceEEEEecCCccchhhhHh
Confidence 355899999999997532111 11 1 1356799999999987 779999999998876665666
Q ss_pred HHHHCCCCCCCeEEeecCCCc
Q 028215 189 NLLFAGYSDWKKLFLRYRNRY 209 (212)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~ 209 (212)
.|.-.|+-.| -+.|++..|
T Consensus 249 ~lDP~g~IsY--kLfr~~t~y 267 (393)
T KOG2832|consen 249 ALDPKGYISY--KLFRGATKY 267 (393)
T ss_pred hcCCcceEEE--EEecCcccc
Confidence 6766677655 244665555
No 226
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=50.33 E-value=35 Score=27.88 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCC
Q 028215 90 IVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLG 169 (212)
Q Consensus 90 ~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G 169 (212)
....||..+++.+... +.....+++||..+ ... +. -+.+. ....+.++++.+++.|
T Consensus 68 ~~~~Qa~~f~~~~~~~-~~~~~~i~lDiE~~--~~~--~~--------~~~~~-----------~~~~~~~f~~~~~~~G 123 (196)
T cd06416 68 SAAGQVQTFLQYLKAN-GIKYGTVWIDIEQN--PCQ--WS--------SDVAS-----------NCQFLQELVSAAKALG 123 (196)
T ss_pred CHHHHHHHHHHHHHhC-CCceeEEEEEEecC--CCC--Cc--------CCHHH-----------HHHHHHHHHHHHHHhC
Confidence 3558888888777553 33445677999975 110 00 00111 1234568888999889
Q ss_pred CeEEEEcCCCh
Q 028215 170 FKIFLLTGRNE 180 (212)
Q Consensus 170 ~kI~~vTgR~~ 180 (212)
+++.+-|+...
T Consensus 124 ~~~~iYt~~~~ 134 (196)
T cd06416 124 LKVGIYSSQYD 134 (196)
T ss_pred CeEEEEcCcch
Confidence 99999999864
No 227
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=49.89 E-value=24 Score=26.38 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRN 179 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~ 179 (212)
--+.+++.++.++++|.+++.+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35678899999999999999999865
No 228
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=48.97 E-value=12 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=18.4
Q ss_pred CCceEEEecCCCCCCChhhHhh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~ 130 (212)
..-.++++-|||.+++..|+..
T Consensus 37 ~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 37 SPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCcEEEEecCCcEEccHHHHhc
Confidence 3568999999999999888764
No 229
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=48.93 E-value=23 Score=28.35 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.--+.+.+.++.++++|.+++.+|+.+..
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 44689999999999999999999998765
No 230
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=48.86 E-value=1.6e+02 Score=27.74 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=15.0
Q ss_pred CCceEEEecCCCCCCChh
Q 028215 109 GKDAWVFDIDETLLSNLP 126 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~ 126 (212)
.++.|++|||.|..++..
T Consensus 138 ~~~~i~LDiD~T~~~~~G 155 (448)
T PF13701_consen 138 PPKEIVLDIDSTVDDVHG 155 (448)
T ss_pred ccceEEEecccccccchh
Confidence 478999999999987654
No 231
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=48.52 E-value=13 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.6
Q ss_pred CCceEEEecCCCCCCChhhHhh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~ 130 (212)
..-.++++-|||.+++..|+..
T Consensus 39 ~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 39 GLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred CCcEEEEeCCCCEEccHHHHhh
Confidence 3568999999999999888764
No 232
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=47.97 E-value=25 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-.+.+.+.++.++++|.+++.+|+.+..
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3578899999999999999999998765
No 233
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=47.64 E-value=28 Score=35.77 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH-HHCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL-LFAGYSD 197 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL-~~~G~~~ 197 (212)
..||.+++.+.++.|++.|+++..+||=... |..+. ++.|+..
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~----TA~aIa~~~Gi~~ 588 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVE----TAIAIAKECGIEA 588 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHH----HHHHHHHHcCCCC
Confidence 5799999999999999999999999997763 33333 5567664
No 234
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.31 E-value=36 Score=25.32 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.+.+.++.++|.+.|++++ +|+. |.+.|++.|++
T Consensus 11 K~~~~~~a~~l~~~G~~i~-AT~g-------Ta~~L~~~Gi~ 44 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLF-ATGG-------TSRVLADAGIP 44 (112)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECcH-------HHHHHHHcCCc
Confidence 4667788888888888884 6643 44677777776
No 235
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=47.03 E-value=15 Score=38.08 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=28.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+.++.|++.+.++.|++.|+++.++||-...
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~ 659 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVE 659 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcHH
Confidence 5689999999999999999999999997653
No 236
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=46.94 E-value=21 Score=31.02 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 138 FNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 138 ~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
++.....+-+.+......+|+.++++.|.++++++.+.|+-=. +..+.-|++.|..
T Consensus 75 l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlg---dvI~~vL~q~~~~ 130 (246)
T PF05822_consen 75 LTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLG---DVIEEVLRQAGVF 130 (246)
T ss_dssp -BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEH---HHHHHHHHHTT--
T ss_pred cCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcH---HHHHHHHHHcCCC
Confidence 4455666777778889999999999999999999999998654 4566788888755
No 237
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=46.88 E-value=27 Score=35.06 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=44.8
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-CCeEEEEcCCChhchHHH
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNTT 186 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G~kI~~vTgR~~~~~~~T 186 (212)
.++.++++|-|+|++--.+ .. ....++.|.+. +-.|.++|||.+...+
T Consensus 501 s~~rli~ldyd~t~~~~~~---------------------------~~--~~~~l~~L~~dp~n~v~i~s~~~r~~l~-- 549 (732)
T KOG1050|consen 501 SKKRLILLDYDLTLIPPRS---------------------------IK--AISILKDLCSDPKNIVYIVSGRGRSVLE-- 549 (732)
T ss_pred ccceEEEecccccccCCCC---------------------------ch--HHHHHHHHhcCCCCeEEEEEccCchhhh--
Confidence 4678999999988774211 11 66777777766 4677899999886443
Q ss_pred HHHH---HHCCCCCCCeEEeecCCC
Q 028215 187 EKNL---LFAGYSDWKKLFLRYRNR 208 (212)
Q Consensus 187 ~~nL---~~~G~~~~~~Lilr~~~~ 208 (212)
.|+ .+.|+..-...++|.++.
T Consensus 550 -~~~~~~~~lgl~aEhG~f~r~~~~ 573 (732)
T KOG1050|consen 550 -KWFFGCKNLGLAAEHGYFVRIPGK 573 (732)
T ss_pred -hhccccccceeecccCceeccCCc
Confidence 333 344555445677776554
No 238
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=46.31 E-value=26 Score=28.06 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
.-.+.+.++++.++++|.+++.+|+.+...
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 345788999999999999999999987753
No 239
>PRK13937 phosphoheptose isomerase; Provisional
Probab=46.27 E-value=26 Score=28.62 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.-.+.+.+.++.++++|.+++.+|+.+..
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34688999999999999999999998765
No 240
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=45.45 E-value=82 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK 199 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~ 199 (212)
+-...++++.++++|.++.++.-++. ..+.|+..|+..+.
T Consensus 57 i~~L~~~~~~~~~~g~~l~l~~~~~~-----v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 57 LGVILGRYKKIKNEGGEVIVCNVSPA-----VKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHhCCceEE
Confidence 34456788899999999998776654 34578888887543
No 241
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.30 E-value=15 Score=26.54 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.2
Q ss_pred CceEEEecCCCCCCChhhHhh
Q 028215 110 KDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~ 130 (212)
.-.++++-|||.+|+..|+..
T Consensus 39 ~~~lvLeeDGT~Vd~EeyF~t 59 (81)
T cd06537 39 VLTLVLEEDGTAVDSEDFFEL 59 (81)
T ss_pred ceEEEEecCCCEEccHHHHhh
Confidence 468999999999999888764
No 242
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=45.13 E-value=56 Score=28.59 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=38.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEeec
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRY 205 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr~ 205 (212)
..+..||=...=+.|++.|++.+++|..+..... +.|+..||. | +|++.
T Consensus 69 PN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~---d~l~~~g~G-Y--Iivk~ 117 (277)
T PRK00994 69 PNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK---DAMEEQGLG-Y--IIVKA 117 (277)
T ss_pred CCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH---HHHHhcCCc-E--EEEec
Confidence 4567777777777888999999999999976433 799999998 4 55553
No 243
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=44.98 E-value=38 Score=30.30 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCCCChhHHHHHHHHHHCC-CeEEEEcCCCh
Q 028215 151 KAPALPASLTFYKELKQLG-FKIFLLTGRNE 180 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G-~kI~~vTgR~~ 180 (212)
+..+.|..-++++.+++.| ++++++||...
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 3467788899999999999 79999999876
No 244
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=43.80 E-value=19 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.7
Q ss_pred CCceEEEecCCCCCCChhhHhh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~ 130 (212)
..-.++++-|||.+++..|+..
T Consensus 39 ~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 39 APVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCeEEEEeCCCcEEccHHHHhc
Confidence 4557999999999999888764
No 245
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=42.61 E-value=17 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.1
Q ss_pred CceEEEecCCCCCCChhhHhh
Q 028215 110 KDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~ 130 (212)
.-.++++-|||.+++..|+..
T Consensus 39 ~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred ccEEEEecCCcEEccHHHHhh
Confidence 467999999999999888764
No 246
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=42.40 E-value=21 Score=25.73 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.7
Q ss_pred CCceEEEecCCCCCCChhhHhh
Q 028215 109 GKDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~ 130 (212)
..-.++++-|||.+++..|+..
T Consensus 41 ~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 41 APITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CceEEEEecCCcEEccHHHHhh
Confidence 4668999999999999888764
No 247
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=41.74 E-value=30 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=8.9
Q ss_pred HHHCCCeEEEEcCCC
Q 028215 165 LKQLGFKIFLLTGRN 179 (212)
Q Consensus 165 Lk~~G~kI~~vTgR~ 179 (212)
|.+.|..+++.+...
T Consensus 20 L~~~~~ep~i~~~~~ 34 (125)
T PF10137_consen 20 LEKLGLEPIIWHEQP 34 (125)
T ss_pred HHhCCCceEEeecCC
Confidence 334567777666654
No 248
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.62 E-value=34 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHCCCeEEEEc
Q 028215 155 LPASLTFYKELKQLGFKIFLLT 176 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vT 176 (212)
.+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999999998
No 249
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=41.06 E-value=19 Score=26.38 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=41.8
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
..+.+|+|+.++-.=. . ..+....++.+.++.+|.+++++.-++. ..+
T Consensus 47 ~~~~vIlD~s~v~~iD---------------s------------sgi~~L~~~~~~~~~~g~~~~l~~~~~~-----v~~ 94 (117)
T PF01740_consen 47 TIKNVILDMSGVSFID---------------S------------SGIQALVDIIKELRRRGVQLVLVGLNPD-----VRR 94 (117)
T ss_dssp SSSEEEEEETTESEES---------------H------------HHHHHHHHHHHHHHHTTCEEEEESHHHH-----HHH
T ss_pred cceEEEEEEEeCCcCC---------------H------------HHHHHHHHHHHHHHHCCCEEEEEECCHH-----HHH
Confidence 3689999999973311 1 2344567889999999999999987754 334
Q ss_pred HHHHCCCCCC
Q 028215 189 NLLFAGYSDW 198 (212)
Q Consensus 189 nL~~~G~~~~ 198 (212)
.|...|+..+
T Consensus 95 ~l~~~~~~~~ 104 (117)
T PF01740_consen 95 ILERSGLIDF 104 (117)
T ss_dssp HHHHTTGHHH
T ss_pred HHHHcCCChh
Confidence 5888887754
No 250
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=41.05 E-value=56 Score=26.59 Aligned_cols=70 Identities=6% Similarity=-0.045 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 028215 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELK 166 (212)
Q Consensus 87 D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk 166 (212)
+.....+||..+.+.+... + +...+++|++.+-..+. ..+.. .....+.+++++++
T Consensus 68 ~~~~a~~qA~~f~~~~~~~-~-~~~~~~lD~E~~~~~~~-----------~~~~~-----------~~~~~~~~f~~~v~ 123 (191)
T cd06414 68 TVAEAREEAEFVLRLIKGY-K-LSYPVYYDLEDETQLGA-----------GLSKD-----------QRTDIANAFCETIE 123 (191)
T ss_pred CHHHHHHHHHHHHHHhhcc-C-CCCCeEEEeecCCCCCC-----------CCCHH-----------HHHHHHHHHHHHHH
Confidence 3445668888888777654 2 22346789987533210 00111 12345678899999
Q ss_pred HCCCeEEEEcCCCh
Q 028215 167 QLGFKIFLLTGRNE 180 (212)
Q Consensus 167 ~~G~kI~~vTgR~~ 180 (212)
+.|+++++-|++.-
T Consensus 124 ~~G~~~~iY~~~~~ 137 (191)
T cd06414 124 AAGYYPGIYANLSW 137 (191)
T ss_pred HcCCCeEEEecHHH
Confidence 99999999999874
No 251
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=40.14 E-value=59 Score=24.15 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.++..++.+.|.+.|++|+ +|+- |.+.|++.|++
T Consensus 12 k~~~~~~a~~l~~~G~~i~-aT~g-------Ta~~L~~~gi~ 45 (116)
T cd01423 12 KPELLPTAQKLSKLGYKLY-ATEG-------TADFLLENGIP 45 (116)
T ss_pred chhHHHHHHHHHHCCCEEE-EccH-------HHHHHHHcCCC
Confidence 4566777888888888885 4442 33566666654
No 252
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=39.74 E-value=32 Score=26.59 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTg 177 (212)
-|.+++.+++.+++|.+++-+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 58899999999999999999986
No 253
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=39.69 E-value=67 Score=25.95 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-C
Q 028215 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-G 169 (212)
Q Consensus 91 v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G 169 (212)
...||..+.+.+... .+...+++|+.++--.+ .. .....+.+++++++++ |
T Consensus 66 a~~qA~~f~~~~~~~--~~~~~~~lD~E~~~~~~---------------~~-----------~~~~~~~~f~~~v~~~~G 117 (184)
T cd06525 66 PEEQAENFYNTIKGK--KMDLKPALDVEVNFGLS---------------KD-----------ELNDYVLRFIEEFEKLSG 117 (184)
T ss_pred HHHHHHHHHHhcccc--CCCCCeEEEEecCCCCC---------------HH-----------HHHHHHHHHHHHHHHHHC
Confidence 458888888777654 23345789999863211 01 1124568899999998 9
Q ss_pred CeEEEEcCCCh
Q 028215 170 FKIFLLTGRNE 180 (212)
Q Consensus 170 ~kI~~vTgR~~ 180 (212)
+++++-|+..-
T Consensus 118 ~~~~iY~~~~~ 128 (184)
T cd06525 118 LKVGIYTYTSF 128 (184)
T ss_pred CCeEEEecHHH
Confidence 99999999864
No 254
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=39.57 E-value=16 Score=33.24 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.3
Q ss_pred CCCceEEEecCCCCCC
Q 028215 108 DGKDAWVFDIDETLLS 123 (212)
Q Consensus 108 ~~~~avvfDIDgTLld 123 (212)
++.+++.||||.||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 4689999999999996
No 255
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=39.41 E-value=53 Score=24.44 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCC---hhchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRN---EFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~---~~~~~~T~~nL~~~G~~ 196 (212)
-+|...++.++++++|+.++.++... +...+...+++++.|++
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 36778888888888899999887521 23345566788888887
No 256
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=39.22 E-value=51 Score=26.36 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.+++.+.+.++.|++. +.|+++||-..... .+-++-.|++
T Consensus 30 klf~ev~e~iqeL~d~-V~i~IASgDr~gsl---~~lae~~gi~ 69 (152)
T COG4087 30 KLFSEVSETIQELHDM-VDIYIASGDRKGSL---VQLAEFVGIP 69 (152)
T ss_pred EEcHhhHHHHHHHHHh-heEEEecCCcchHH---HHHHHHcCCc
Confidence 6789999999999999 99999999554322 1333445655
No 257
>PRK13938 phosphoheptose isomerase; Provisional
Probab=38.85 E-value=40 Score=28.05 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.--+.+++.++.++++|.+++.+|+.+..
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 44788999999999999999999998765
No 258
>PLN03190 aminophospholipid translocase; Provisional
Probab=37.59 E-value=51 Score=34.97 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+.++.+|+.+.++.|++.|+++.++||-...
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~ 754 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDKQE 754 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHH
Confidence 4589999999999999999999999997653
No 259
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=37.45 E-value=53 Score=24.47 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..+.+-+.|+++|++|.++|+..-. +.+.+.|++
T Consensus 14 P~lala~~L~~rGh~V~~~~~~~~~------~~v~~~Gl~ 47 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPPDFR------ERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETGGGH------HHHHHTT-E
T ss_pred HHHHHHHHHhccCCeEEEeecccce------ecccccCce
Confidence 4567889999999999999997542 344777876
No 260
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.23 E-value=1.3e+02 Score=26.40 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
..|...+++++|+++|+++++...
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEEC
Confidence 457789999999999999987654
No 261
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.22 E-value=72 Score=27.97 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=36.0
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEee
Q 028215 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 150 ~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr 204 (212)
...+..||-...=+.|.+.|++.+++|..+.... .+.|+..||. | +|++
T Consensus 67 sPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~---kd~l~~~g~G-Y--Iivk 115 (276)
T PF01993_consen 67 SPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKA---KDALEEEGFG-Y--IIVK 115 (276)
T ss_dssp -S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGG---HHHHHHTT-E-E--EEET
T ss_pred CCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhh---HHHHHhcCCc-E--EEEe
Confidence 3457889888888888999999999999886542 3689999998 4 5554
No 262
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=37.07 E-value=1.2e+02 Score=21.76 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=40.2
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
+.+.+|+|+-|+-.-.+ ..+.-..++++.++.+|.++.++--+++ ..+
T Consensus 40 ~~~~vvlDls~v~~iDs---------------------------sg~~~l~~~~~~~~~~g~~l~l~g~~~~-----v~~ 87 (109)
T cd07041 40 RARGVIIDLTGVPVIDS---------------------------AVARHLLRLARALRLLGARTILTGIRPE-----VAQ 87 (109)
T ss_pred CCCEEEEECCCCchhcH---------------------------HHHHHHHHHHHHHHHcCCeEEEEeCCHH-----HHH
Confidence 46789999988644211 1233456788899999999998877754 335
Q ss_pred HHHHCCCCC
Q 028215 189 NLLFAGYSD 197 (212)
Q Consensus 189 nL~~~G~~~ 197 (212)
.|+..|+..
T Consensus 88 ~l~~~gl~~ 96 (109)
T cd07041 88 TLVELGIDL 96 (109)
T ss_pred HHHHhCCCh
Confidence 788888875
No 263
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=36.82 E-value=52 Score=29.04 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
..-+.+.-|+..|++.|-.|.+.++.+-...+.+...|.+.|++.|
T Consensus 51 Hle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~ 96 (268)
T PF05221_consen 51 HLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVF 96 (268)
T ss_dssp --SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEE
T ss_pred echHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEE
Confidence 3456778899999999999999999998888888999999998853
No 264
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=36.11 E-value=61 Score=30.43 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
...+.+.-++..|++.|-+|.++++.+-...+.+...|.+.|++.+
T Consensus 56 Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~ 101 (425)
T PRK05476 56 HMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVF 101 (425)
T ss_pred eccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEE
Confidence 5677889999999999999999999998888889999999999854
No 265
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=35.86 E-value=78 Score=22.88 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
++...+++++++++|+.++.+|..+.. ...+++++.+++
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~~---~~~~~~~~~~~~ 83 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDPE---EIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSHH---HHHHHHHHHTCS
T ss_pred hhHHHHHhhhhccceEEeeeccccccc---chhhhhhhhccc
Confidence 467788899999999999999997665 445677777755
No 266
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=35.80 E-value=67 Score=23.55 Aligned_cols=33 Identities=39% Similarity=0.534 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
+...++.+.|.+.|++++ +|.. |.+.|++.|++
T Consensus 13 ~~~~~~~~~l~~~G~~l~-aT~g-------T~~~l~~~gi~ 45 (110)
T cd01424 13 PEAVEIAKRLAELGFKLV-ATEG-------TAKYLQEAGIP 45 (110)
T ss_pred hHHHHHHHHHHHCCCEEE-EchH-------HHHHHHHcCCe
Confidence 455667777777787774 4432 33566666665
No 267
>PRK04531 acetylglutamate kinase; Provisional
Probab=35.52 E-value=1.4e+02 Score=27.66 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=49.8
Q ss_pred HHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeE
Q 028215 93 GYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKI 172 (212)
Q Consensus 93 ~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI 172 (212)
.++..|++.+... ...+.+|+=++|-++.. ..+...+-+..|++.|.++
T Consensus 21 ~e~~~~l~~F~~~--~~~~~~VIKiGG~~l~~-----------------------------~~~~l~~dla~L~~~G~~~ 69 (398)
T PRK04531 21 KEISQYLKRFSQL--DAERFAVIKVGGAVLRD-----------------------------DLEALASSLSFLQEVGLTP 69 (398)
T ss_pred hhhHHHHHHHhCc--CCCcEEEEEEChHHhhc-----------------------------CHHHHHHHHHHHHHCCCcE
Confidence 5778888887664 23478888899988853 1244566677788889999
Q ss_pred EEEcCCChhchHHHHHHHHHCCCCC
Q 028215 173 FLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 173 ~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
++|=|-... ..+.|.+.|++.
T Consensus 70 VlVHGggpq----I~~~l~~~gie~ 90 (398)
T PRK04531 70 IVVHGAGPQ----LDAELDAAGIEK 90 (398)
T ss_pred EEEECCCHH----HHHHHHHcCCCc
Confidence 988886542 236788888874
No 268
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=35.47 E-value=49 Score=27.56 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-.+.+.+.++.++++|.+++.+||.+..
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3678999999999999999999998765
No 269
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=35.17 E-value=11 Score=22.79 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=9.2
Q ss_pred ccccCccccCCch
Q 028215 58 TNDAGEWDSVPSR 70 (212)
Q Consensus 58 ~nn~~~~~~vP~~ 70 (212)
-||+++++++|+.
T Consensus 9 gnni~~fkt~p~s 21 (38)
T PF09198_consen 9 GNNIQNFKTTPSS 21 (38)
T ss_dssp SS--SSSSSHHHH
T ss_pred CCceeceeecCcc
Confidence 3899999999974
No 270
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.00 E-value=96 Score=27.63 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|...+++++++++|+.+.+.||-.--. +.+.+.|.+.|+.
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ll~-~e~~~~L~~~g~~ 107 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGVGLT-EARLDALADAGLD 107 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCccCC-HHHHHHHHhCCCC
Confidence 34567788888888888888888764321 2345667777765
No 271
>PRK13936 phosphoheptose isomerase; Provisional
Probab=34.97 E-value=50 Score=27.22 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.--+.+.++++.++++|.+++.+|+.+..
T Consensus 122 G~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 122 GNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34678999999999999999999997654
No 272
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=34.82 E-value=50 Score=27.17 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-.+.+.+.++.++++|.+++.+|+.+..
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3688999999999999999999998764
No 273
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=34.71 E-value=51 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchH
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~ 184 (212)
.--+.+++.++..+++|.+++-+|||+.....
T Consensus 120 GNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 120 GNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 34678999999999999999999999986544
No 274
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=34.71 E-value=1.5e+02 Score=20.30 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=38.7
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~n 189 (212)
.+.+++|+.++-.-. ....--..++.+.++++|.++.+..-+++ ..+-
T Consensus 38 ~~~viid~~~v~~iD---------------------------s~g~~~L~~l~~~~~~~g~~v~i~~~~~~-----~~~~ 85 (99)
T cd07043 38 PRRLVLDLSGVTFID---------------------------SSGLGVLLGAYKRARAAGGRLVLVNVSPA-----VRRV 85 (99)
T ss_pred CCEEEEECCCCCEEc---------------------------chhHHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHH
Confidence 578999998863311 13344567888999999999777766543 2356
Q ss_pred HHHCCCCCC
Q 028215 190 LLFAGYSDW 198 (212)
Q Consensus 190 L~~~G~~~~ 198 (212)
|+..|+..+
T Consensus 86 l~~~gl~~~ 94 (99)
T cd07043 86 LELTGLDRL 94 (99)
T ss_pred HHHhCccee
Confidence 777887753
No 275
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=34.48 E-value=69 Score=24.61 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=38.6
Q ss_pred CchhhhhhhccccCccccCCchhhHHHHhhccCccccccHHHHHHHHHHHH-hhccccCCCCCceEEEe
Q 028215 49 CDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHA-KSANVSAGDGKDAWVFD 116 (212)
Q Consensus 49 c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~-~~~~~~~~~~~~avvfD 116 (212)
..+=|+-.|++- +=.+-|.+-...++..+.++.|.+.-.. ...|+.-. +..... =.+.+|||||
T Consensus 26 D~~~~le~~ls~--~Lpadp~qA~~~~~~rl~s~~~~~~q~~-L~~Ayqgv~~Aw~lg-i~k~PAVVfD 90 (114)
T PF07511_consen 26 DAPERLEAELSA--GLPADPQQAEAQARQRLQSPDWQQLQQQ-LAQAYQGVVDAWSLG-ITKYPAVVFD 90 (114)
T ss_pred CcHHHHHHHHhc--cCCCChHHHHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHhC-ccccCEEEEc
Confidence 344455555542 2235688888999999999998754333 33343332 222222 2478999999
No 276
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=34.10 E-value=45 Score=29.91 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
...|...+++++++++|+.+++.||-..
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 3457788999999999999999999754
No 277
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.12 E-value=70 Score=32.98 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
.+++.|++...++.|++.|++++++||-....
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a 752 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDNDAA 752 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCCHHH
Confidence 56889999999999999999999999987643
No 278
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.73 E-value=74 Score=31.09 Aligned_cols=44 Identities=30% Similarity=0.491 Sum_probs=35.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHH-HHCCCCCC
Q 028215 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL-LFAGYSDW 198 (212)
Q Consensus 151 ~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL-~~~G~~~~ 198 (212)
+...+||.+|=+.+|++-|++.+.+||-.+- |.... ..+|.++|
T Consensus 445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN~~----TAa~IA~EAGVDdf 489 (681)
T COG2216 445 KDIVKPGIKERFAELRKMGIKTVMITGDNPL----TAAAIAAEAGVDDF 489 (681)
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCCCHH----HHHHHHHHhCchhh
Confidence 4567899999999999999999999998763 44444 55788765
No 279
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=32.47 E-value=2e+02 Score=26.38 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=52.6
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCC----CCCCHHHHHHHHHhc--------CCCCChhHHHHHHHHHHCCCeEEEEcC
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGS----EIFNEDAFDEWVDLA--------KAPALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~----~~~~~~~~~~wv~~~--------~~~~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
.....+=+.|.-++-. +.+-.. .+.+.+.+.+|.+.. -+|-.|++.+++++|.++|+.+.+-=+
T Consensus 123 a~~lG~HlEGPfi~~~----~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs 198 (380)
T TIGR00221 123 AQALGLHLEGPFLSPE----KKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHT 198 (380)
T ss_pred ceeeeEeeecCcCChh----hcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCC
Confidence 3456666777666431 111110 123557788888742 256689999999999999999987655
Q ss_pred CChhchHHHHHHHHHCCCCCCCeEE
Q 028215 178 RNEFQRNTTEKNLLFAGYSDWKKLF 202 (212)
Q Consensus 178 R~~~~~~~T~~nL~~~G~~~~~~Li 202 (212)
.... + +...-.+.|.....||+
T Consensus 199 ~A~~--~-~~~~a~~~Ga~~~THlf 220 (380)
T TIGR00221 199 NATY--E-LAKAAFKAGATHATHLY 220 (380)
T ss_pred CCCH--H-HHHHHHHcCCCeeeeec
Confidence 4332 2 22334466887666654
No 280
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=32.28 E-value=1e+02 Score=26.16 Aligned_cols=44 Identities=20% Similarity=0.121 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
-++.++-++-+.+++.+++++++|-..+. .+.+.+.|.++|+.+
T Consensus 130 v~V~~~d~le~~v~~~dv~iaiLtVPa~~-AQ~vad~Lv~aGVkG 173 (211)
T COG2344 130 VPVYDLDDLEKFVKKNDVEIAILTVPAEH-AQEVADRLVKAGVKG 173 (211)
T ss_pred eeeechHHHHHHHHhcCccEEEEEccHHH-HHHHHHHHHHcCCce
Confidence 56678888888899999999999987764 456788999999886
No 281
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=32.26 E-value=83 Score=29.34 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
+..+.+.-++..|++.|-+|.+.++.|-...+.+...|...|++.|
T Consensus 40 hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 40 HVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVF 85 (406)
T ss_pred echHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEE
Confidence 5567788899999999999999999988888889999999999854
No 282
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=32.16 E-value=1.6e+02 Score=20.87 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=38.5
Q ss_pred CCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHH
Q 028215 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (212)
Q Consensus 109 ~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~ 188 (212)
+.+.+++|+.+.-.-. ...+.-..++.+.++++|..+.++.-+++ ..+
T Consensus 42 ~~~~vvidls~v~~iD---------------------------ssgl~~L~~~~~~~~~~~~~~~l~~~~~~-----~~~ 89 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMD---------------------------SSGLGVLLGRYKQVRRVGGQLVLVSVSPR-----VAR 89 (108)
T ss_pred CCCeEEEECCCCeEEc---------------------------cccHHHHHHHHHHHHhcCCEEEEEeCCHH-----HHH
Confidence 4678999998864321 12344456778888999988777665543 335
Q ss_pred HHHHCCCCCC
Q 028215 189 NLLFAGYSDW 198 (212)
Q Consensus 189 nL~~~G~~~~ 198 (212)
.|+..|+...
T Consensus 90 ~l~~~~l~~~ 99 (108)
T TIGR00377 90 LLDITGLLRI 99 (108)
T ss_pred HHHHhChhhe
Confidence 6777787753
No 283
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=32.15 E-value=1.3e+02 Score=24.53 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 028215 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELK 166 (212)
Q Consensus 87 D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk 166 (212)
+...+.+||..+++.++...-.....+++|+...-..+ .+. ....+..++++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~~---------------~~~-----------~~~~~~~f~~~v~ 118 (196)
T cd06415 65 SVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSGNS---------------KAA-----------NTSAILAFMDTIK 118 (196)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCCCC---------------HHH-----------HHHHHHHHHHHHH
Confidence 34556677877766654420012235789999752111 111 1134678899999
Q ss_pred HCCCeEEEEcCCCh
Q 028215 167 QLGFKIFLLTGRNE 180 (212)
Q Consensus 167 ~~G~kI~~vTgR~~ 180 (212)
+.|++..+=|++.-
T Consensus 119 ~~G~~~~iYt~~~~ 132 (196)
T cd06415 119 DAGYKPMLYSYKPL 132 (196)
T ss_pred HhCCCcEEEecHHH
Confidence 99999999999863
No 284
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=31.13 E-value=91 Score=29.15 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
+.-+.+.-++..|++.|-+|++.++.+-...+.+...|...|++.|
T Consensus 44 hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~ 89 (413)
T cd00401 44 HMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVF 89 (413)
T ss_pred cchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEE
Confidence 4556788899999999999999999998888889999999998854
No 285
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.86 E-value=1.5e+02 Score=21.10 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=39.9
Q ss_pred CCceEEEecCCCCC-CChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHH
Q 028215 109 GKDAWVFDIDETLL-SNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (212)
Q Consensus 109 ~~~avvfDIDgTLl-dn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~ 187 (212)
..+.+++|+-++-. |+ ..+-...++++.++++|.++.++.-++. ..
T Consensus 38 ~~~~vilDls~v~~iDs----------------------------sgl~~L~~l~~~~~~~g~~l~l~~~~~~-----v~ 84 (100)
T cd06844 38 AGKTIVIDISALEFMDS----------------------------SGTGVLLERSRLAEAVGGQFVLTGISPA-----VR 84 (100)
T ss_pred CCCEEEEECCCCcEEcH----------------------------HHHHHHHHHHHHHHHcCCEEEEECCCHH-----HH
Confidence 46799999988643 22 2334557888999999999998876654 34
Q ss_pred HHHHHCCCCC
Q 028215 188 KNLLFAGYSD 197 (212)
Q Consensus 188 ~nL~~~G~~~ 197 (212)
+.|+..|+..
T Consensus 85 ~~l~~~gl~~ 94 (100)
T cd06844 85 ITLTESGLDK 94 (100)
T ss_pred HHHHHhCchh
Confidence 5777778764
No 286
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=30.70 E-value=1.2e+02 Score=30.85 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~ 195 (212)
.-+|....++++|+++|++++..-.=.-......-+.+.+.|+
T Consensus 318 ~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 318 DRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGY 360 (772)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCe
Confidence 3456777999999999999998876332222222344555554
No 287
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=30.58 E-value=1e+02 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
-+|...++.++++++|+.++.+|.-+.. ...+++++.+++
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~~~---~~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDSPF---SLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCHH---HHHHHHHhcCCC
Confidence 3566777888888888888888865532 344677777765
No 288
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=30.58 E-value=1.1e+02 Score=24.10 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=33.5
Q ss_pred CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcC
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
..|..|+|||.+|+-. ++.+. +....+++..+.... .-.....+.|......|.-|+++|+
T Consensus 43 ~~P~iV~FDmK~Tld~---F~~Q~--~~~~lte~q~e~lt~----rF~~aL~~~L~~yq~~H~~VILVsp 103 (128)
T PRK13717 43 NAPVTAAFNMKQTVDA---FFDSA--SQKQLSEAQSKALSA----RFNTALEASLQAWQQKHHAVILVSP 103 (128)
T ss_pred CCCeEEEEehHHHHHH---HHHHH--hccCCCHHHHHHHHH----HHHHHHHHHHHHHHHhCCEEEEech
Confidence 3577999999999643 22221 222334332222221 1122334567777777888888775
No 289
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.54 E-value=61 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-.+.+.++++.++++|.+++.+|+.+..
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3578999999999999999999998865
No 290
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=30.43 E-value=1e+02 Score=27.31 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLT 176 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vT 176 (212)
..|...++++.|+++|+++++..
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 45777899999999999988654
No 291
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=30.32 E-value=1.1e+02 Score=24.93 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHHCC--CeEEEEcC-CChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLG--FKIFLLTG-RNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G--~kI~~vTg-R~~~~~~~T~~nL~~~G~~ 196 (212)
.|-..++|+.++++| +.|+|+|+ |++.... ..+..++.+
T Consensus 52 TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~---~y~~~~~~~ 93 (157)
T KOG2501|consen 52 TPILKDFYEELKDNAAPFEVVFVSSDRDEESLD---EYMLEHHGD 93 (157)
T ss_pred CchHHHHHHHHHhcCCceEEEEEecCCCHHHHH---HHHHhcCCC
Confidence 466789999999886 88899998 4444333 455554433
No 292
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.25 E-value=83 Score=27.91 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 137 IFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 137 ~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+|+....++.+.+.......|..+++..|+.+++++++.|..-..
T Consensus 122 ~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigd 166 (298)
T KOG3128|consen 122 GFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIGD 166 (298)
T ss_pred CcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchHH
Confidence 344455666666677788899999999999999999999987543
No 293
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=29.96 E-value=1.3e+02 Score=27.02 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|...+++++++++|+.+.+.||-..-. +...+.|.+.|+.
T Consensus 75 l~~~~~~il~~~~~~g~~~~i~TNG~ll~-~~~~~~L~~~g~~ 116 (378)
T PRK05301 75 LRKDLEELVAHARELGLYTNLITSGVGLT-EARLAALKDAGLD 116 (378)
T ss_pred CchhHHHHHHHHHHcCCcEEEECCCccCC-HHHHHHHHHcCCC
Confidence 34567788888888888888888865322 2345667777765
No 294
>PRK02947 hypothetical protein; Provisional
Probab=29.95 E-value=65 Score=27.56 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
--+.+.++++.++++|.+++.+|+.+.
T Consensus 118 ~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 118 RNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 357789999999999999999999864
No 295
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.47 E-value=67 Score=27.11 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEE-----cCCChhchHHHHHHHHHCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLL-----TGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~v-----TgR~~~~~~~T~~nL~~~G~~ 196 (212)
...++-++.+++|+++|++++|+ ||+++....-++.|.--..+|
T Consensus 37 ~~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~NSvlW~~G~diP 85 (204)
T PF06434_consen 37 NRRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATNSVLWHMGEDIP 85 (204)
T ss_dssp S-BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEEET
T ss_pred cccccHHHHHHHHHHcCCcEEEecCccccCcccchhhhhhhhhccCCCC
Confidence 45677899999999999999976 777766544444554443344
No 296
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.20 E-value=1.1e+02 Score=23.98 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=32.0
Q ss_pred ChhHH-HHHHHHHHCCCeEEEEcCCCh-------hchHHHHHHHHHCCCC
Q 028215 155 LPASL-TFYKELKQLGFKIFLLTGRNE-------FQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~l-ell~~Lk~~G~kI~~vTgR~~-------~~~~~T~~nL~~~G~~ 196 (212)
.+|++ ..++-|.++|+.||.+|.=+. +..+.+.+.|+.+|+.
T Consensus 76 ltGilasV~~pLsd~gigIFavStydtDhiLVr~~dLekAv~~L~eaGhe 125 (128)
T COG3603 76 LTGILASVSQPLSDNGIGIFAVSTYDTDHILVREEDLEKAVKALEEAGHE 125 (128)
T ss_pred cchhhhhhhhhHhhCCccEEEEEeccCceEEEehhhHHHHHHHHHHcCCc
Confidence 34444 678889999999999998553 2456778889998875
No 297
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=29.04 E-value=65 Score=25.15 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCeEEEEcC-CChhchHHHHHHHHHCCCC
Q 028215 159 LTFYKELKQLGFKIFLLTG-RNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 159 lell~~Lk~~G~kI~~vTg-R~~~~~~~T~~nL~~~G~~ 196 (212)
.+|.+.|+++|++-++++| -.+.....|...+...||.
T Consensus 101 t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~ 139 (174)
T PF00857_consen 101 TDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYR 139 (174)
T ss_dssp SSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-E
T ss_pred ccccccccccccceEEEcccccCcEEehhHHHHHHCCCE
Confidence 3567778888888888888 4456678888888888876
No 298
>PRK15482 transcriptional regulator MurR; Provisional
Probab=29.04 E-value=68 Score=27.70 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
.-.+.+.++++.++++|.+++.+|+.+...
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSP 222 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 446889999999999999999999988753
No 299
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.98 E-value=1.9e+02 Score=19.61 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChhc-------hHHHHHHHHHCCCCC
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEFQ-------RNTTEKNLLFAGYSD 197 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~~-------~~~T~~nL~~~G~~~ 197 (212)
-..|+-..|.+.|.++.++..++.-. +....+.|++.|+.-
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v 57 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEV 57 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEE
Confidence 35688888999999999999887643 455677888888763
No 300
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.85 E-value=63 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
.-.+.+.+.++.++++|.+|+.+|+.+...
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 346788999999999999999999987653
No 301
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=28.82 E-value=1.7e+02 Score=23.22 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~ 195 (212)
.|...++++++++.|+.+.+.|+-... ...+.+.+.|+
T Consensus 76 ~~~l~~li~~~~~~g~~v~i~TNg~~~---~~l~~l~~~g~ 113 (191)
T TIGR02495 76 QAGLPDFLRKVRELGFEVKLDTNGSNP---RVLEELLEEGL 113 (191)
T ss_pred cHhHHHHHHHHHHCCCeEEEEeCCCCH---HHHHHHHhcCC
Confidence 355788899999999999999987632 22344555664
No 302
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=28.73 E-value=1.6e+02 Score=23.97 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhccccCC-CCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 028215 88 SEIVSGYSLKHAKSANVSAG-DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELK 166 (212)
Q Consensus 88 ~~~v~~~A~~y~~~~~~~~~-~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk 166 (212)
......||..+++.++.. + .....+++|+...-.. ......+..|+++++
T Consensus 69 ~~~a~~eA~~f~~~~~~~-~~~~~~~~~lD~E~~~~~----------------------------~~~~~~~~~F~~~v~ 119 (192)
T cd06522 69 AADAQAEARYFANTAKSL-GLSKNTVMVADMEDSSSS----------------------------GNATANVNAFWQTMK 119 (192)
T ss_pred hHHHHHHHHHHHHHHHHc-CCCCCCceEEEeecCCCc----------------------------chHHHHHHHHHHHHH
Confidence 445667777777666432 1 1233577999874220 012344678999999
Q ss_pred HCCC-eEEEEcCCC
Q 028215 167 QLGF-KIFLLTGRN 179 (212)
Q Consensus 167 ~~G~-kI~~vTgR~ 179 (212)
++|+ +.++=|++.
T Consensus 120 ~~g~~~~~iY~~~~ 133 (192)
T cd06522 120 AAGYKNTDVYTSAS 133 (192)
T ss_pred HcCCCCcEEEccHH
Confidence 9998 777777764
No 303
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.69 E-value=79 Score=25.98 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.3
Q ss_pred CCceEEEecCCCCCC
Q 028215 109 GKDAWVFDIDETLLS 123 (212)
Q Consensus 109 ~~~avvfDIDgTLld 123 (212)
+.+|+|||=|.++.-
T Consensus 42 ~ikavVlDKDNcit~ 56 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITA 56 (190)
T ss_pred CceEEEEcCCCeeeC
Confidence 689999999999874
No 304
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.14 E-value=1.7e+02 Score=20.97 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=10.4
Q ss_pred HHHHHCCCCCCCeEEee
Q 028215 188 KNLLFAGYSDWKKLFLR 204 (212)
Q Consensus 188 ~nL~~~G~~~~~~Lilr 204 (212)
+.|+++|+...+.++.-
T Consensus 53 ~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 53 EVLERAGIEKADAVVIL 69 (116)
T ss_dssp HHHHHTTGGCESEEEEE
T ss_pred hHHhhcCccccCEEEEc
Confidence 45666777766655544
No 305
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=28.12 E-value=78 Score=23.65 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCChh
Q 028215 158 SLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 158 ~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+.++.+.|.++|+++.+++.+...
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 468899999999999999887654
No 306
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=28.06 E-value=1.3e+02 Score=29.11 Aligned_cols=34 Identities=38% Similarity=0.438 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.+++.++.+.|.+.|++|+ .|+. |.+.|+..|++
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~G-------Tak~L~e~GI~ 47 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STGG-------TAKLLAEAGIP 47 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecch-------HHHHHHHCCCe
Confidence 5788999999999999995 6654 55789999986
No 307
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.95 E-value=92 Score=23.93 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=37.7
Q ss_pred chhhhhhhccccCccccCCchhhHHHHhhccCccccccHHHHHHHHHHHH-hhccccCCCCCceEEEe
Q 028215 50 DSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHA-KSANVSAGDGKDAWVFD 116 (212)
Q Consensus 50 ~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~D~~~v~~~A~~y~-~~~~~~~~~~~~avvfD 116 (212)
.+=|+-.|+. .+=.+.|.+-...+++.+.+..+. +...-...|+.-. +.-... =.+.+|||||
T Consensus 28 ~~erle~~ls--~~Lpadp~qA~~~~~~~l~sp~~~-~~q~~l~~Ayqgv~~Aw~lG-i~k~PAVV~D 91 (113)
T TIGR03757 28 APERLEAQLS--AGLPADPQQAAAQARQRLQSPDWA-RLQRRLAQAYQGVADAWQLG-VTKIPAVVVD 91 (113)
T ss_pred cHHHHHHHHh--ccCCCCHHHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHHHHHcC-CccCCEEEEc
Confidence 3445555554 223356888888999999998875 3443444444433 222222 2368899999
No 308
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=27.93 E-value=1.4e+02 Score=24.20 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHC-C
Q 028215 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-G 169 (212)
Q Consensus 91 v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~-G 169 (212)
...||..+.+.++.. ..+...+++|+++.-..+.+ . .....+..|+++++++ |
T Consensus 70 a~~qA~~f~~~~~~~-~~~~~~~~lDvE~~~~~~~~--------------~-----------~~~~~~~~f~~~v~~~~g 123 (194)
T cd06524 70 PKQQADNFLNTVKLL-GPGDLPPVLDVEWDGRKSSA--------------K-----------QIQEGVLEWLDAVEKATG 123 (194)
T ss_pred HHHHHHHHHHHcCCC-CCCCCCeEEEEecCCCCCCH--------------H-----------HHHHHHHHHHHHHHHHHC
Confidence 347788777776552 12233457999985332110 0 1235667888998875 8
Q ss_pred CeEEEEcCCCh
Q 028215 170 FKIFLLTGRNE 180 (212)
Q Consensus 170 ~kI~~vTgR~~ 180 (212)
+++.+-|++.-
T Consensus 124 ~~~~iY~~~~~ 134 (194)
T cd06524 124 VKPIIYTNPSF 134 (194)
T ss_pred CCeEEEEcHHH
Confidence 99998888863
No 309
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=27.05 E-value=1e+02 Score=27.58 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
..|...+++++|+++|+++++...
T Consensus 62 ~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 62 KFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEec
Confidence 457778889999999998887654
No 310
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=26.92 E-value=71 Score=28.06 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
.-.+.+.+.++.++++|.+++.+|+.+...
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 346889999999999999999999998753
No 311
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=26.89 E-value=64 Score=25.90 Aligned_cols=44 Identities=5% Similarity=-0.176 Sum_probs=24.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.+.-|+.-..+..++.|.++.++--..........+||..+++.
T Consensus 74 ~l~GGt~lT~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~ 117 (145)
T PF12694_consen 74 ELTGGTALTVEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIR 117 (145)
T ss_dssp S--HHHHHHHHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCce
Confidence 45557777777777777777777333333345566777777665
No 312
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.49 E-value=39 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhh
Q 028215 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 87 D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~ 130 (212)
.++.+...|..-+ ... ...-.++++=|||.+++..|+..
T Consensus 22 sL~eL~~K~~~~l---~~~--~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 22 SLEELLEKACDKL---QLP--EEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp SHHHHHHHHHHHH---T-S--SSTCEEEETTTTCBESSCHHHCC
T ss_pred CHHHHHHHHHHHh---CCC--CcCcEEEEeCCCcEEccHHHHhh
Confidence 3555555555433 221 23557899999999999888764
No 313
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.48 E-value=1.4e+02 Score=22.10 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
++...++.+.++++|+.++.+|..+. +...+++++.|++
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~~---~~~~~~~~~~~~~ 81 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDSV---ESHAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHhCCC
Confidence 56667778888888999998886543 3345677777765
No 314
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=26.47 E-value=55 Score=29.87 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHCCCeEEEEc
Q 028215 155 LPASLTFYKELKQLGFKIFLLT 176 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vT 176 (212)
+.-+.++|++|+++|+.++++|
T Consensus 185 LHFt~~LL~kLk~kGv~~afvT 206 (348)
T COG0809 185 LHFTEELLEKLKAKGVEIAFVT 206 (348)
T ss_pred CCCCHHHHHHHHHCCceEEEEE
Confidence 5557899999999999999998
No 315
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=26.44 E-value=1.3e+02 Score=19.41 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=10.7
Q ss_pred cccCeeEeecCCccc
Q 028215 27 QIFPGRIEFAGDRKI 41 (212)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (212)
.+.|.++|+.+.+-|
T Consensus 28 ~~~~fimELP~Yr~P 42 (54)
T PF07664_consen 28 ESSPFIMELPPYRMP 42 (54)
T ss_pred CCCCeEEeCCCCCCC
Confidence 388999999554433
No 316
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=26.44 E-value=1.6e+02 Score=25.17 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRN 179 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~ 179 (212)
-+|...+++++|+++|+++++.+...
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 45778999999999999999988765
No 317
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=26.25 E-value=1.5e+02 Score=27.62 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEE-cCCChhchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLL-TGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~v-TgR~~~~~~~T~~nL~~~G~~ 196 (212)
..|.+.++++.+++.|+.+.+. |+...-......+.|.++|+.
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 3577889999999999999885 875432223455677777765
No 318
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.24 E-value=77 Score=26.75 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
-.+.+.+.++.++++|.+++.+|+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 87 (268)
T TIGR00393 59 ESLELLNLIPHLKRLSHKIIAFTGSPNSS 87 (268)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCCCc
Confidence 45778999999999999999999987653
No 319
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.20 E-value=1.9e+02 Score=18.88 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCeEEEEcCCChhc-hHHHHHHHHHCCCC
Q 028215 158 SLTFYKELKQLGFKIFLLTGRNEFQ-RNTTEKNLLFAGYS 196 (212)
Q Consensus 158 ~lell~~Lk~~G~kI~~vTgR~~~~-~~~T~~nL~~~G~~ 196 (212)
..++++.++++|++.+.+|...... .....+..++.|+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 5688999999999999999976322 22233444556655
No 320
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=26.11 E-value=1.2e+02 Score=26.17 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
-.+.|-+.|+++|..+.|++.+..... .+.+++.|++
T Consensus 19 Rcl~LA~~l~~~g~~v~f~~~~~~~~~---~~~i~~~g~~ 55 (279)
T TIGR03590 19 RCLTLARALHAQGAEVAFACKPLPGDL---IDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHH---HHHHHHcCCe
Confidence 345566666667777777776654322 2455556655
No 321
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.09 E-value=2.4e+02 Score=22.65 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 028215 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELK 166 (212)
Q Consensus 87 D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk 166 (212)
+.....+||..+.+.+.. ++..+++|++++... .....+..|+++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~----~~~~~~lD~E~~~~~-----------------------------~~~~~~~~f~~~v~ 111 (177)
T cd06523 65 STADAKAEARDFYNRANK----KPTFYVLDVEVTSMS-----------------------------DMNAGVQAFISELR 111 (177)
T ss_pred CHHHHHHHHHHHHHHhcC----CCceEEEeeccCCcc-----------------------------hHHHHHHHHHHHHH
Confidence 344566777777665433 344688999985321 12345788899999
Q ss_pred HCCC-eEEEEcCCCh
Q 028215 167 QLGF-KIFLLTGRNE 180 (212)
Q Consensus 167 ~~G~-kI~~vTgR~~ 180 (212)
++|. ++++-|++.-
T Consensus 112 ~~g~~~~~lYt~~~~ 126 (177)
T cd06523 112 RLGAKKVGLYIGHHF 126 (177)
T ss_pred HccCCcEEEEchHHH
Confidence 9876 5677787653
No 322
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.09 E-value=1e+02 Score=21.42 Aligned_cols=41 Identities=20% Similarity=0.414 Sum_probs=26.4
Q ss_pred HHHHHHHHHC--CCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEeec
Q 028215 159 LTFYKELKQL--GFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRY 205 (212)
Q Consensus 159 lell~~Lk~~--G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lilr~ 205 (212)
.++++.++.. +.+++++|+..... ....+.+.|..+| +.||
T Consensus 59 ~~~~~~i~~~~~~~~ii~~t~~~~~~---~~~~~~~~g~~~~---l~kp 101 (112)
T PF00072_consen 59 LELLEQIRQINPSIPIIVVTDEDDSD---EVQEALRAGADDY---LSKP 101 (112)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSTSHH---HHHHHHHTTESEE---EESS
T ss_pred cccccccccccccccEEEecCCCCHH---HHHHHHHCCCCEE---EECC
Confidence 4666677664 59999999877632 2234447887753 5554
No 323
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=26.08 E-value=1.5e+02 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=16.3
Q ss_pred CCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 169 GFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 169 G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.++|+++=+||..+-..|.+.|.+.|++
T Consensus 141 ~f~V~v~EsrP~~~G~~~a~~L~~~gI~ 168 (301)
T TIGR00511 141 DIEVIATETRPRKQGHITAKELRDYGIP 168 (301)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHCCCC
Confidence 3556666666654444556666666665
No 324
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=25.77 E-value=80 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.-.+.+.+.++.++++|.+++.+|+.+..
T Consensus 100 G~t~~~~~~~~~ak~~g~~vI~iT~~~~s 128 (321)
T PRK11543 100 GGAKELDLIIPRLEDKSIALLAMTGKPTS 128 (321)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 34578899999999999999999998765
No 325
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=25.70 E-value=2.3e+02 Score=19.51 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHCC-CeEEEEcCCC-----hhchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLG-FKIFLLTGRN-----EFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G-~kI~~vTgR~-----~~~~~~T~~nL~~~G~~ 196 (212)
++.-+.++++.++.+| -.+-++||+. ...+....++|.+ ++.
T Consensus 11 A~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~ 58 (83)
T PF01713_consen 11 ALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhc
Confidence 3445667788887776 5566999987 3356778889988 766
No 326
>PRK10949 protease 4; Provisional
Probab=25.33 E-value=6.6e+02 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEE
Q 028215 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLL 175 (212)
Q Consensus 107 ~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~v 175 (212)
.+..++|++|+|+---.. + +-...+.+.++++++.|.+|+-.
T Consensus 110 D~rIkgivL~i~s~gG~~-------------~--------------a~~~eI~~ai~~fk~sGKpVvA~ 151 (618)
T PRK10949 110 DRNITGIVLDLKNFAGAD-------------Q--------------PSMQYIGKALREFRDSGKPVYAV 151 (618)
T ss_pred CCCceEEEEEeCCCCCcc-------------H--------------HHHHHHHHHHHHHHHhCCeEEEE
Confidence 467899999998521100 0 11245566777778888776654
No 327
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=25.10 E-value=73 Score=27.45 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
..+++.++++.|+++|. ++++||++.
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~ 169 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDP 169 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence 36889999999999997 789999875
No 328
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.04 E-value=1.6e+02 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHC
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~ 193 (212)
=+.++++++..+|.+|+++-++++. .+...++|++.
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~~~-~~~~~~~l~~~ 69 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKPEV-LEKAAERLRAR 69 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHH
Confidence 3468888999999999999777664 34455666653
No 329
>PRK10658 putative alpha-glucosidase; Provisional
Probab=25.01 E-value=2.2e+02 Score=28.25 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGR 178 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR 178 (212)
-+|.-.+++++|+++|+++.+...-
T Consensus 323 ~FPdp~~mi~~L~~~G~k~~~~i~P 347 (665)
T PRK10658 323 TFPDPEGMLKRLKAKGLKICVWINP 347 (665)
T ss_pred hCCCHHHHHHHHHHCCCEEEEeccC
Confidence 4577789999999999999987664
No 330
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.94 E-value=2.1e+02 Score=24.41 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCceEEEe-cCCCCCCChhh----Hh--hhcCCCCCC--------CHHHHHHHHHhcC-------CCCChhHHHHHHHHH
Q 028215 109 GKDAWVFD-IDETLLSNLPY----YA--AHGFGSEIF--------NEDAFDEWVDLAK-------APALPASLTFYKELK 166 (212)
Q Consensus 109 ~~~avvfD-IDgTLldn~~~----~~--~~~~g~~~~--------~~~~~~~wv~~~~-------~~~~pg~lell~~Lk 166 (212)
|-+-+=+| ||||...|... .. +...+..+| +|++|-+-+..+. ..+.....+++++++
T Consensus 30 GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir 109 (224)
T KOG3111|consen 30 GADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIR 109 (224)
T ss_pred CCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHH
Confidence 34445566 69999988542 11 112333322 3677655544432 244566889999999
Q ss_pred HCCCeEEEEcCCChhchHHHHHHHH
Q 028215 167 QLGFKIFLLTGRNEFQRNTTEKNLL 191 (212)
Q Consensus 167 ~~G~kI~~vTgR~~~~~~~T~~nL~ 191 (212)
++|.++.++-. |....+..+.++.
T Consensus 110 ~~Gmk~G~alk-PgT~Ve~~~~~~~ 133 (224)
T KOG3111|consen 110 EKGMKVGLALK-PGTPVEDLEPLAE 133 (224)
T ss_pred HcCCeeeEEeC-CCCcHHHHHHhhc
Confidence 99999998765 3333444444443
No 331
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.89 E-value=1.6e+02 Score=26.17 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=19.9
Q ss_pred HHHHHHHHC--CCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 160 TFYKELKQL--GFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 160 ell~~Lk~~--G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.+|..+.++ .++|++.=+||..+-..|.+.|.+.|++
T Consensus 135 ~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~ 173 (310)
T PRK08535 135 SVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIP 173 (310)
T ss_pred HHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCC
Confidence 344444433 3555666666654444556666666665
No 332
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=79 Score=26.58 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=25.0
Q ss_pred CCC-hhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 153 PAL-PASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 153 ~~~-pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
|.. |+..++++.++++|+++.+=||.+-..
T Consensus 82 P~~~~~l~~Ll~~l~~~g~~~~lETngti~~ 112 (212)
T COG0602 82 PLLQPNLLELLELLKRLGFRIALETNGTIPV 112 (212)
T ss_pred CCCcccHHHHHHHHHhCCceEEecCCCCccc
Confidence 444 589999999999999999999876543
No 333
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=24.44 E-value=1.6e+02 Score=25.06 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhc----hHHHHHHHHHCCCCCCCeEEeecCCCc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQ----RNTTEKNLLFAGYSDWKKLFLRYRNRY 209 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~----~~~T~~nL~~~G~~~~~~Lilr~~~~~ 209 (212)
.+..+..+-+.|+++|++|.+++-..... .+...+.+++.|+. ++.+-.++||
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~---~~~~~~P~d~ 103 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGID---RLHVMEPGDY 103 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH-------EEEE--S-H
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCC---EEEEECCCCH
Confidence 35678888999999999999999986432 34555667777655 4555555555
No 334
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=24.28 E-value=95 Score=28.56 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCCceEEEecCCCCCC
Q 028215 88 SEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLS 123 (212)
Q Consensus 88 ~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLld 123 (212)
.+.+++++..+.+.+... .-...+++||.||.++-
T Consensus 319 ~~~ia~~~~~~~~~~~~~-~~~v~vvl~d~~g~~l~ 353 (361)
T PRK00075 319 YDRIAERILERAREYVGG-SIEVGVVLFDRDGQILG 353 (361)
T ss_pred HHHHHHHHHHHHHHhcCC-CceEEEEEEeCCCCEEE
Confidence 666777777777665443 34567899999999985
No 335
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=24.13 E-value=87 Score=24.77 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
+.+.++++.++++|+++.+-||...
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 5678999999999999999999654
No 336
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=23.68 E-value=98 Score=26.72 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChhc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQ 182 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~~ 182 (212)
-.|.+.+.+++++++|.+++.+|+.+...
T Consensus 130 ~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 130 RTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 36789999999999999999999988753
No 337
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=23.49 E-value=77 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCh
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRNE 180 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~~ 180 (212)
+...++++.+++.|+++.+-||-.-
T Consensus 87 ~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 87 KPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred HhHHHHHHHHHHCCCCEEEECCCCC
Confidence 6788999999999999999999764
No 338
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.48 E-value=1.8e+02 Score=21.60 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHHCC---CeEEEEcCCCh-hchHHHHHHHHHCCCC
Q 028215 154 ALPASLTFYKELKQLG---FKIFLLTGRNE-FQRNTTEKNLLFAGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G---~kI~~vTgR~~-~~~~~T~~nL~~~G~~ 196 (212)
-++...++.++++++| ++++.+|.-+. ...+...+.+++.|..
T Consensus 41 ~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~ 87 (142)
T cd02968 41 TLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPG 87 (142)
T ss_pred HHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3566677778887775 88988886443 2233445667777643
No 339
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=23.42 E-value=1.2e+02 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCeEEEEcCC-ChhchHHHHHHHHHCCCCC
Q 028215 160 TFYKELKQLGFKIFLLTGR-NEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 160 ell~~Lk~~G~kI~~vTgR-~~~~~~~T~~nL~~~G~~~ 197 (212)
+|.+.|+++|++-++++|= .+.+...|...+.+.||..
T Consensus 100 ~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v 138 (161)
T cd00431 100 DLDELLRERGIDTLVVCGIATDICVLATARDALDLGYRV 138 (161)
T ss_pred CHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCEE
Confidence 5777888889999999994 4666788888888888763
No 340
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.30 E-value=1.3e+02 Score=24.37 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHCCCeEEEEcCCC-hhchHHHHHHHHHCCCCC
Q 028215 161 FYKELKQLGFKIFLLTGRN-EFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 161 ll~~Lk~~G~kI~~vTgR~-~~~~~~T~~nL~~~G~~~ 197 (212)
|-..|+++|+..++++|-. +.+...|...+...||..
T Consensus 124 L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v 161 (205)
T COG1335 124 LDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQV 161 (205)
T ss_pred HHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeE
Confidence 4456677888888888854 556777888888887763
No 341
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=23.29 E-value=3.8e+02 Score=21.56 Aligned_cols=32 Identities=6% Similarity=-0.015 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHhhccccCCCCCceEEEecCCC
Q 028215 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDET 120 (212)
Q Consensus 87 D~~~v~~~A~~y~~~~~~~~~~~~~avvfDIDgT 120 (212)
++......|...++..... ..++.+|+-=||+
T Consensus 87 ~l~~aL~~A~~~l~~~~~~--~~~~iiil~sd~~ 118 (183)
T cd01453 87 SLQNGLEMALESLKHMPSH--GSREVLIIFSSLS 118 (183)
T ss_pred hHHHHHHHHHHHHhcCCcc--CceEEEEEEcCCC
Confidence 5666677777776543221 2344454422654
No 342
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=23.24 E-value=79 Score=22.66 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
+++++.+.|.+.|++|+ +|+ .|.+.|+++|++
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATE-------GTAKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEH-------HHHHHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEE-ECh-------HHHHHHHHcCCC
Confidence 46788899999998775 443 355788888887
No 343
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.20 E-value=1.8e+02 Score=23.71 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHH
Q 028215 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (212)
Q Consensus 159 lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~ 192 (212)
..+.+.|.++|++++++..|.....+.+.+.++.
T Consensus 18 ~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~ 51 (250)
T PRK08063 18 KAIALRLAEEGYDIAVNYARSRKAAEETAEEIEA 51 (250)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 3456667777777766656655443334444443
No 344
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=23.00 E-value=79 Score=26.51 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=22.5
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.+++.++++.++++|+++ ++||.+..
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~ 165 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRG 165 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEe
Confidence 689999999999999997 88998764
No 345
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.99 E-value=1.4e+02 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHC--CCeEEEEcCCChhchHHHHHHHHH-CCCC
Q 028215 155 LPASLTFYKELKQL--GFKIFLLTGRNEFQRNTTEKNLLF-AGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~--G~kI~~vTgR~~~~~~~T~~nL~~-~G~~ 196 (212)
.+.+.++.+.+.+. |++++ +|+.. .++|++ .|++
T Consensus 11 K~~~~~~a~~~~~ll~Gf~i~-AT~gT-------a~~L~~~~Gi~ 47 (115)
T cd01422 11 KEDLVEFVKQHQELLSRHRLV-ATGTT-------GLLIQEATGLT 47 (115)
T ss_pred hHHHHHHHHHHHHHhcCCEEE-EechH-------HHHHHHhhCCc
Confidence 46667777777777 88874 55543 345666 6665
No 346
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.98 E-value=1.7e+02 Score=26.12 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHHHHHHCC--CeEEEEcCCChhch-HHHHHHHHHCCCC
Q 028215 159 LTFYKELKQLG--FKIFLLTGRNEFQR-NTTEKNLLFAGYS 196 (212)
Q Consensus 159 lell~~Lk~~G--~kI~~vTgR~~~~~-~~T~~nL~~~G~~ 196 (212)
+.++..+.++| ++|+++=+||..+- ..|.+.|.+.|++
T Consensus 140 ~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~ 180 (303)
T TIGR00524 140 LGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGID 180 (303)
T ss_pred HHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCC
Confidence 34555554443 55555556665543 4566677777766
No 347
>PLN02494 adenosylhomocysteinase
Probab=22.85 E-value=1.5e+02 Score=28.28 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
-+.+.-|+..|++.|-+|.+.++.+-...+.+...|...|++.|
T Consensus 56 ~~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~vf 99 (477)
T PLN02494 56 TIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVF 99 (477)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCceEE
Confidence 45577889999999999999999998888888899998898854
No 348
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=22.82 E-value=97 Score=27.73 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.+.+++.++.++++|.+++-+|+.+..
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S 131 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADS 131 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 578999999999999999999998765
No 349
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=22.75 E-value=1.6e+02 Score=23.89 Aligned_cols=31 Identities=13% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCeEEEEcCCChhchHHHHHHH
Q 028215 160 TFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (212)
Q Consensus 160 ell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL 190 (212)
+.++.+++.|++++++|..+....+...+.|
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 4556666667776666666544444333333
No 350
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=22.74 E-value=3.8e+02 Score=22.00 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=41.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCC-----------hhchH-HHHHHHHHCCCCCCCeEEeecCCCcc
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRN-----------EFQRN-TTEKNLLFAGYSDWKKLFLRYRNRYE 210 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~-----------~~~~~-~T~~nL~~~G~~~~~~Lilr~~~~~~ 210 (212)
|+.-|=+++++.+.++--.++++-|+. ...|. ...+.|..+|.+. ++++++--|++
T Consensus 14 P~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~--r~~~~~v~d~~ 81 (172)
T COG1056 14 PLHTGHLYVIKRALSKVDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL--RVYLRPVFDIE 81 (172)
T ss_pred CccHhHHHHHHHHHHhCCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCc--eEEEEecCccc
Confidence 778888999999998888888888873 23443 3445888899885 78888766654
No 351
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=22.46 E-value=1.1e+02 Score=22.50 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-+.++.+.|+++|++|.++|.+.+.
T Consensus 12 ~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 12 FIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3568899999999999999997664
No 352
>PRK14129 heat shock protein HspQ; Provisional
Probab=22.43 E-value=83 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=17.5
Q ss_pred CCCceEEEecCCCCCCChhhHhh
Q 028215 108 DGKDAWVFDIDETLLSNLPYYAA 130 (212)
Q Consensus 108 ~~~~avvfDIDgTLldn~~~~~~ 130 (212)
-+..+||||||=.--.+.+.|..
T Consensus 17 ~~yrGVV~DVDP~fs~~e~w~~~ 39 (105)
T PRK14129 17 LGYLGVVVDIDPEYSLEEPSPDE 39 (105)
T ss_pred cCCCeEEEeeCCCcCCCchhHHh
Confidence 36789999999987766665543
No 353
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=22.40 E-value=2e+02 Score=23.57 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=13.3
Q ss_pred CceEEEec---CCCCCCChhhHhh
Q 028215 110 KDAWVFDI---DETLLSNLPYYAA 130 (212)
Q Consensus 110 ~~avvfDI---DgTLldn~~~~~~ 130 (212)
..-++||| ||.-+.+.|+..+
T Consensus 117 ~~~~vFDil~~~g~~l~~~pl~eR 140 (207)
T cd07901 117 LTLFLFDILYLDGEDLLDLPLSER 140 (207)
T ss_pred EEEEEEEEEEECCcchhcCCHHHH
Confidence 34689995 7765556565444
No 354
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=22.38 E-value=1.7e+02 Score=26.11 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEc
Q 028215 154 ALPASLTFYKELKQLGFKIFLLT 176 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vT 176 (212)
..|...++++.|+++|+++.+..
T Consensus 62 ~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 62 RFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEE
Confidence 45677888888888888887543
No 355
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=22.16 E-value=2.1e+02 Score=25.31 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCC--CeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 158 SLTFYKELKQLG--FKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 158 ~lell~~Lk~~G--~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
++.++..++++| ++|++.-+||..+-......|.+.|++
T Consensus 122 v~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~ 162 (275)
T PRK08335 122 VLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIE 162 (275)
T ss_pred HHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCC
Confidence 445555555554 466666666655433345666666666
No 356
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=22.14 E-value=1.1e+02 Score=27.15 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
.|.+.+.++.++++|.+++.+|+.+..
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 578999999999999999999998764
No 357
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=22.04 E-value=2.2e+02 Score=21.74 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK 199 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~ 199 (212)
.+...++.+.++++|+.++-+|..+. +...+++++.|++ |.
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~~---~~~~~~~~~~~~~-~~ 90 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDKP---EKLSRFAEKELLN-FT 90 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHhCCC-Ce
Confidence 34556788888889999998886543 4455778888876 53
No 358
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=21.95 E-value=2.1e+02 Score=25.80 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=19.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEc
Q 028215 153 PALPASLTFYKELKQLGFKIFLLT 176 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vT 176 (212)
..+|...+++++|+++|+++++..
T Consensus 61 ~~FPdp~~mv~~L~~~G~klv~~i 84 (332)
T cd06601 61 GGFPNPKEMFDNLHNKGLKCSTNI 84 (332)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEe
Confidence 346777899999999999988754
No 359
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.91 E-value=1.1e+02 Score=27.11 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
-.|.+++.+++++++|.+++.+|+.+..
T Consensus 143 ~T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 143 RTPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3688999999999999999999998765
No 360
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=21.84 E-value=1.3e+02 Score=20.15 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCC
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRN 179 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~ 179 (212)
|.-.+-|+.|.+.|++|-++|-..
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~e 25 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSE 25 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHH
Confidence 456788999999999999998543
No 361
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.79 E-value=1.7e+02 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=25.7
Q ss_pred CCCChhHHHHHHHHHHCC--CeEEEEcCCChh
Q 028215 152 APALPASLTFYKELKQLG--FKIFLLTGRNEF 181 (212)
Q Consensus 152 ~~~~pg~lell~~Lk~~G--~kI~~vTgR~~~ 181 (212)
...+-++.+++++|+++| +.|+++||.+..
T Consensus 47 ~N~if~avkiydeL~~~GedveVA~VsG~~~~ 78 (344)
T PF04123_consen 47 VNAIFGAVKIYDELKAEGEDVEVAVVSGSPDV 78 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEECCCCC
Confidence 356778999999999998 889999998764
No 362
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.69 E-value=2e+02 Score=21.67 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCC--hhchHHHHHHHHHCC
Q 028215 159 LTFYKELKQLGFKIFLLTGRN--EFQRNTTEKNLLFAG 194 (212)
Q Consensus 159 lell~~Lk~~G~kI~~vTgR~--~~~~~~T~~nL~~~G 194 (212)
.++.+.|.++|...+++++|+ ....+.+...|+..|
T Consensus 14 ~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~ 51 (167)
T PF00106_consen 14 RALARALARRGARVVILTSRSEDSEGAQELIQELKAPG 51 (167)
T ss_dssp HHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCceEEEEeeecccccccccccccccccc
Confidence 355666666777667677766 333444555565544
No 363
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.65 E-value=1e+02 Score=26.24 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=22.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTG 177 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTg 177 (212)
.-.+.+.++++.++++|.+++.+|+
T Consensus 186 G~t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 186 GRTKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECC
Confidence 3467899999999999999999998
No 364
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=21.52 E-value=4.3e+02 Score=24.35 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCC
Q 028215 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGF 170 (212)
Q Consensus 91 v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~ 170 (212)
+..+|..|.+.+.. +.+|+=+.|-++++. -++...+-+..|++.|.
T Consensus 4 ~~~~~~~~i~~~~~------~~~ViK~GG~~~~~~----------------------------~~~~~~~~i~~l~~~g~ 49 (429)
T TIGR01890 4 WFREAAPYINAHRG------KTFVVGLGGELVEGG----------------------------NLGNIVADIALLHSLGV 49 (429)
T ss_pred HHhhhhHHHHHhCC------CEEEEEEChhhccCc----------------------------cHHHHHHHHHHHHHCCC
Confidence 34567777766632 377888888877531 11234455566677777
Q ss_pred eEEEEcCCChhchHHHHHHHHHCCCCC
Q 028215 171 KIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 171 kI~~vTgR~~~~~~~T~~nL~~~G~~~ 197 (212)
+++++-|-.. ...+.+++.|++.
T Consensus 50 ~~vlVHGgg~----~i~~~~~~~g~~~ 72 (429)
T TIGR01890 50 RLVLVHGARP----QIERILAARGRTP 72 (429)
T ss_pred cEEEEcCCCH----HHHHHHHHcCCCc
Confidence 7777777653 2235666777764
No 365
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=21.50 E-value=2e+02 Score=21.57 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
+|...++.+.++++|+.++.++..+... ..+.+.+.+++
T Consensus 48 ~p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~~~~~ 86 (146)
T PF08534_consen 48 LPYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLKKYGIN 86 (146)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHHHTTTT
T ss_pred hhhHHhhhhhhccCceEEEEecccCCHH---HHHHHHhhCCC
Confidence 3466677777788999998887776654 55677777766
No 366
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=21.36 E-value=2.5e+02 Score=20.44 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCCCCCeEEe
Q 028215 160 TFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL 203 (212)
Q Consensus 160 ell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~~~~~Lil 203 (212)
+....+++.|+++++|+--+... ..++.+..+++ ++ ++.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~---~~~f~~~~~~p-~~-ly~ 42 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG---IEKFCELTGFP-FP-LYV 42 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH---HHHHHhccCCC-Cc-EEE
Confidence 45678889999999998666532 44677677887 45 554
No 367
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.35 E-value=1.1e+02 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
+-.+.+++.++.++++|.+|+.+|+....
T Consensus 188 G~t~e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 188 GYTREIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 45688999999999999999999998654
No 368
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.35 E-value=4e+02 Score=22.42 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=42.6
Q ss_pred CceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEcCCCh-----hchH
Q 028215 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNE-----FQRN 184 (212)
Q Consensus 110 ~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~~G~kI~~vTgR~~-----~~~~ 184 (212)
.+.++..+..++.++...+... +.+..-.+.++.|+..|+.++-+.|... .-..
T Consensus 37 aD~~~~NlE~~v~~~~~~~~~~---------------------~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~ 95 (250)
T PF09587_consen 37 ADLVVANLETPVTDSGQPASGY---------------------PHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLL 95 (250)
T ss_pred CCEEEEEeeecCcCCCCcCCCc---------------------ceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHH
Confidence 3688999999987763311110 2223334557778888888886665532 2345
Q ss_pred HHHHHHHHCCCC
Q 028215 185 TTEKNLLFAGYS 196 (212)
Q Consensus 185 ~T~~nL~~~G~~ 196 (212)
.|.+.|++.|+.
T Consensus 96 ~Tl~~L~~~gi~ 107 (250)
T PF09587_consen 96 DTLEALDKAGIP 107 (250)
T ss_pred HHHHHHHHCCCc
Confidence 688899988887
No 369
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.13 E-value=2e+02 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHCCC-eE-EEEcCC---ChhchHHHHHHHHHCCCC
Q 028215 153 PALPASLTFYKELKQLGF-KI-FLLTGR---NEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~-kI-~~vTgR---~~~~~~~T~~nL~~~G~~ 196 (212)
.-.+.+.++++.|+++|. .+ +++-|. ++..++..++.|++.|+.
T Consensus 62 ~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 62 HGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 446777888888888875 33 455555 333444456779999986
No 370
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.13 E-value=2.7e+02 Score=20.79 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCeEEEEcC-C-----ChhchHHHHHHHHHCCCC
Q 028215 158 SLTFYKELKQLGFKIFLLTG-R-----NEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 158 ~lell~~Lk~~G~kI~~vTg-R-----~~~~~~~T~~nL~~~G~~ 196 (212)
+.+|+..|++.|+.+++=-- . +.-.++.....|..+|+.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~ 46 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIE 46 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCce
Confidence 45789999999999887722 1 122456666788888887
No 371
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=21.03 E-value=1.1e+02 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 156 PASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 156 pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
..++.++.++|+.|.+++-+|++++.
T Consensus 100 ~el~~~~~~aK~~g~~liaiT~~~~S 125 (202)
T COG0794 100 KELLNLAPKAKRLGAKLIAITSNPDS 125 (202)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 46788899999999999999999986
No 372
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=21.01 E-value=1.8e+02 Score=25.75 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
.-.||+..+.+.|+..|.++.++|.+.- .....+-++.++..
T Consensus 60 DGP~GA~aLa~aL~~lG~~~~ivtd~~~--~~~~~~~~~~~~~~ 101 (291)
T PF14336_consen 60 DGPPGAAALARALQALGKEVVIVTDERC--APVVKAAVRAAGLQ 101 (291)
T ss_pred CChHHHHHHHHHHHHcCCeEEEEECHHH--HHHHHHHHHHHhhC
Confidence 4568999999999999999999997653 33444455555554
No 373
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=20.96 E-value=1.4e+02 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCeEEEEcCC-ChhchHHHHHHHHHCCCC
Q 028215 159 LTFYKELKQLGFKIFLLTGR-NEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 159 lell~~Lk~~G~kI~~vTgR-~~~~~~~T~~nL~~~G~~ 196 (212)
-+|...|+++|++-++++|= ...+...|...+...||.
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~ 165 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFE 165 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCE
Confidence 45666666677776666663 344556666666666654
No 374
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=20.90 E-value=1.5e+02 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCeEEEEcCCC-hhchHHHHHHHHHCCCCC
Q 028215 160 TFYKELKQLGFKIFLLTGRN-EFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 160 ell~~Lk~~G~kI~~vTgR~-~~~~~~T~~nL~~~G~~~ 197 (212)
++-..|+++|++-++++|=. ..+...|...+.+.||..
T Consensus 89 ~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v 127 (155)
T cd01014 89 DLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDV 127 (155)
T ss_pred CHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcE
Confidence 56677889999999999955 456788899999999874
No 375
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=20.79 E-value=2.2e+02 Score=23.08 Aligned_cols=61 Identities=10% Similarity=-0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhccccCCCCCceEEEecCCCCCCChhhHhhhcCCCCCCCHHHHHHHHHhcCCCCChhHHHHHHHHHH-CC
Q 028215 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQ-LG 169 (212)
Q Consensus 91 v~~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn~~~~~~~~~g~~~~~~~~~~~wv~~~~~~~~pg~lell~~Lk~-~G 169 (212)
...||..+++.+... .+...+++|+++.-... . .....+.++++++++ .|
T Consensus 63 a~~qA~~f~~~~~~~--~~~~~~~lD~E~~~~~~----------------~-----------~~~~~~~~f~~~v~~~~G 113 (195)
T cd06417 63 AIAEADYFLNNIKGY--VGKAVLVLDWESYQNSA----------------W-----------GNSAWARQWVNRVHELTG 113 (195)
T ss_pred HHHHHHHHHHHhccc--cCCCcEEEEeeCCCCCc----------------h-----------HHHHHHHHHHHHHHHHHC
Confidence 567888888777553 23346789998853211 0 112346788999876 58
Q ss_pred CeEEEEcCCCh
Q 028215 170 FKIFLLTGRNE 180 (212)
Q Consensus 170 ~kI~~vTgR~~ 180 (212)
+++++=|++.-
T Consensus 114 ~~~~iY~~~~~ 124 (195)
T cd06417 114 VWPMVYVSKSV 124 (195)
T ss_pred CCcEEEecHHH
Confidence 99999888753
No 376
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=20.73 E-value=60 Score=30.68 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=11.5
Q ss_pred CCCceEEEecCCCCCC
Q 028215 108 DGKDAWVFDIDETLLS 123 (212)
Q Consensus 108 ~~~~avvfDIDgTLld 123 (212)
.+.+++.||+|-||+.
T Consensus 10 ~~i~~iGFDmDyTLa~ 25 (448)
T PF05761_consen 10 KDIDVIGFDMDYTLAR 25 (448)
T ss_dssp CC--EEEE-TBTTTBE
T ss_pred ccCCEEEECcccchhh
Confidence 4688999999999995
No 377
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=20.68 E-value=97 Score=28.04 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCChhchHHHHHHHHHCCCC
Q 028215 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vTgR~~~~~~~T~~nL~~~G~~ 196 (212)
-...++++|.++|++|.+.+ |.. +.|.+-|+..|++
T Consensus 15 fFk~~I~eL~~~GheV~it~-R~~---~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITA-RDK---DETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEE-ecc---chHHHHHHHcCCC
Confidence 34677899999999987655 543 3677889999998
No 378
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=20.56 E-value=3.8e+02 Score=23.12 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=18.7
Q ss_pred HHHHHHHhhccccCCCCCceEEEecCCCCCCC
Q 028215 93 GYSLKHAKSANVSAGDGKDAWVFDIDETLLSN 124 (212)
Q Consensus 93 ~~A~~y~~~~~~~~~~~~~avvfDIDgTLldn 124 (212)
.+|..|.+.+.. +.+|.=+.|+++.+
T Consensus 3 ~~~~~yi~~~~~------~~~ViKlGGs~i~~ 28 (279)
T cd04250 3 IEALPYIQKFRG------KTVVIKYGGNAMKD 28 (279)
T ss_pred hhhhHHHHHHcC------CEEEEEEChHHhcC
Confidence 467777766633 36888899999865
No 379
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=20.47 E-value=6.6e+02 Score=22.95 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCceEEEecCCCC---CCChhhHhhhcCCCCCCCHHHHHHHHHhc----CCCCChhHHHHHHHHHHCCCeEEEEcCCChh
Q 028215 109 GKDAWVFDIDETL---LSNLPYYAAHGFGSEIFNEDAFDEWVDLA----KAPALPASLTFYKELKQLGFKIFLLTGRNEF 181 (212)
Q Consensus 109 ~~~avvfDIDgTL---ldn~~~~~~~~~g~~~~~~~~~~~wv~~~----~~~~~pg~lell~~Lk~~G~kI~~vTgR~~~ 181 (212)
..++++|+.||+= ++....-...--|...|.++...+...++ ..||+--..|++..|.+.+.+.+++.+-..-
T Consensus 92 ~~~g~~~~~d~~~dg~~~~~~~~~~~l~GdGDFrS~E~i~Ll~eADIVVTNPPFSLFrEyv~~Li~~~KkFlIIGN~Nai 171 (336)
T PF13651_consen 92 PKKGYIFEYDGNGDGKIDIDDIEVTPLKGDGDFRSDECIELLKEADIVVTNPPFSLFREYVAQLIEYDKKFLIIGNINAI 171 (336)
T ss_pred ccceEEEEEecCCcccccccccceeeccCCCCcCcHHHHHHHhcCCEEEeCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 4578899998851 11111100111233457666666666654 3599999999999999999999999997654
Q ss_pred chHHHHHHHHH----CCCCCCCeEEeecCCCcc
Q 028215 182 QRNTTEKNLLF----AGYSDWKKLFLRYRNRYE 210 (212)
Q Consensus 182 ~~~~T~~nL~~----~G~~~~~~Lilr~~~~~~ 210 (212)
.....-.-++. +|+..-.....+-+++|+
T Consensus 172 TYkeiFplik~nk~WlG~~~~g~~~F~vP~~~~ 204 (336)
T PF13651_consen 172 TYKEIFPLIKENKIWLGYTFRGDMWFRVPDDYE 204 (336)
T ss_pred cHHHHHHHHhcCcEEeccccCCceeeecCCCCc
Confidence 33332223322 244431233445555554
No 380
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.36 E-value=3.1e+02 Score=24.25 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHCCCe-EEEEcCCChh-----chHHHHHHHHHCCCC
Q 028215 155 LPASLTFYKELKQLGFK-IFLLTGRNEF-----QRNTTEKNLLFAGYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~k-I~~vTgR~~~-----~~~~T~~nL~~~G~~ 196 (212)
..|+.++.+.|.++|++ |+++++.... -.+.-.+.|+++|++
T Consensus 160 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~ 207 (333)
T COG1609 160 FAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLP 207 (333)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCC
Confidence 46788899999999866 8999997421 124456778888887
No 381
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=20.22 E-value=2.2e+02 Score=21.04 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHCCCeEEEEc
Q 028215 157 ASLTFYKELKQLGFKIFLLT 176 (212)
Q Consensus 157 g~lell~~Lk~~G~kI~~vT 176 (212)
....+++.|..+|+++++++
T Consensus 83 ~~~~~~~~l~~~gi~l~~~~ 102 (137)
T cd00338 83 DLLELLELLEAHGVRVVTAD 102 (137)
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 34445555555555555554
No 382
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=20.19 E-value=1.9e+02 Score=22.27 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCC-----hhchHHHHHHHHH-CCCC
Q 028215 154 ALPASLTFYKELKQLGFKIFLLTGRN-----EFQRNTTEKNLLF-AGYS 196 (212)
Q Consensus 154 ~~pg~lell~~Lk~~G~kI~~vTgR~-----~~~~~~T~~nL~~-~G~~ 196 (212)
-+|...++.++++++|+.++-++... ....+...+++++ .|++
T Consensus 39 e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~ 87 (152)
T cd00340 39 QYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT 87 (152)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC
Confidence 35778888889888999998887432 1223445567775 6765
No 383
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.14 E-value=2e+02 Score=27.10 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCC---hhchHHHHHHHHHCCCCC
Q 028215 155 LPASLTFYKELKQLGFKIFLLTGRN---EFQRNTTEKNLLFAGYSD 197 (212)
Q Consensus 155 ~pg~lell~~Lk~~G~kI~~vTgR~---~~~~~~T~~nL~~~G~~~ 197 (212)
..-..++.++|++.|+.-+++|+.. ...-....+.++++|+|.
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 3466789999999999999999764 233445568899999995
No 384
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=20.06 E-value=1.8e+02 Score=22.87 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHC--CCeEEEEcCCChhchHHHHHHHHHC-CCC
Q 028215 155 LPASLTFYKELKQL--GFKIFLLTGRNEFQRNTTEKNLLFA-GYS 196 (212)
Q Consensus 155 ~pg~lell~~Lk~~--G~kI~~vTgR~~~~~~~T~~nL~~~-G~~ 196 (212)
.+.++++.+.+++. |+++ ++|+. |.+.|++. |++
T Consensus 16 K~~l~~~a~~l~~ll~Gf~l-~AT~g-------Ta~~L~~~~Gi~ 52 (142)
T PRK05234 16 KDDLVAWVKAHKDLLEQHEL-YATGT-------TGGLIQEATGLD 52 (142)
T ss_pred hHHHHHHHHHHHHHhcCCEE-EEeCh-------HHHHHHhccCCe
Confidence 45667777777777 8775 46654 33566666 765
No 385
>PF15240 Pro-rich: Proline-rich
Probab=20.04 E-value=69 Score=26.61 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHhhcc
Q 028215 5 KFLLVISLHSFLISHAF 21 (212)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (212)
|+|.|.++-||+|+++.
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 67778888888888665
No 386
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=20.03 E-value=1.9e+02 Score=23.55 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCe-EEEEcCCChhchHHHHHHHHHCCCCCC
Q 028215 158 SLTFYKELKQLGFK-IFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (212)
Q Consensus 158 ~lell~~Lk~~G~k-I~~vTgR~~~~~~~T~~nL~~~G~~~~ 198 (212)
+..+++.|++.|.+ |++..+.... ...+.+.++..|+...
T Consensus 25 v~avv~~l~~~g~~~i~i~e~~~~~-~~~~~~~~~~~G~~~~ 65 (206)
T PF04015_consen 25 VRAVVEMLKEAGAKEIIIAESPGSG-AADTREVFKRSGYEEI 65 (206)
T ss_pred HHHHHHHHHHcCCCceEEEeCCCcc-hHhHHHHHHHcchhhH
Confidence 34678899999998 6666665443 4467788888888854
No 387
>smart00463 SMR Small MutS-related domain.
Probab=20.02 E-value=1.7e+02 Score=20.04 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHCCC--eEEEEcCCChhc-------hHHHHHHHHHCCCC
Q 028215 153 PALPASLTFYKELKQLGF--KIFLLTGRNEFQ-------RNTTEKNLLFAGYS 196 (212)
Q Consensus 153 ~~~pg~lell~~Lk~~G~--kI~~vTgR~~~~-------~~~T~~nL~~~G~~ 196 (212)
.++.-+.++++.+++.|. .+-++||+.... +....+++...+|+
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~ 65 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFR 65 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhcccc
Confidence 355666788899999996 788999976432 33444455555665
Done!