Query 028216
Match_columns 212
No_of_seqs 194 out of 535
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02195 cellulose synthase A 100.0 5.5E-71 1.2E-75 549.5 17.8 200 3-202 157-366 (977)
2 PLN02638 cellulose synthase A 100.0 1.2E-70 2.6E-75 550.8 18.5 201 3-203 254-464 (1079)
3 PLN02915 cellulose synthase A 100.0 1.4E-70 3E-75 549.1 18.4 201 3-203 192-402 (1044)
4 PLN02436 cellulose synthase A 100.0 1.2E-70 2.6E-75 549.9 17.6 200 3-202 270-479 (1094)
5 PLN02400 cellulose synthase 100.0 1.6E-70 3.6E-75 550.0 18.4 201 3-203 261-471 (1085)
6 PLN02189 cellulose synthase 100.0 1.5E-70 3.3E-75 548.7 17.4 201 3-203 236-446 (1040)
7 PLN02248 cellulose synthase-li 100.0 3.5E-70 7.5E-75 547.9 18.2 200 4-203 268-482 (1135)
8 PLN02190 cellulose synthase-li 100.0 2.2E-69 4.9E-74 528.4 19.1 199 2-203 7-205 (756)
9 PLN02893 Cellulose synthase-li 100.0 4.2E-68 9.1E-73 520.0 17.1 194 2-203 10-208 (734)
10 PF03552 Cellulose_synt: Cellu 100.0 1.3E-47 2.8E-52 374.4 8.6 113 90-202 1-113 (720)
11 TIGR03030 CelA cellulose synth 99.9 2E-21 4.4E-26 191.2 14.8 146 13-163 52-207 (713)
12 PRK11498 bcsA cellulose syntha 99.8 2.2E-20 4.7E-25 187.5 14.0 132 12-162 180-317 (852)
13 COG1215 Glycosyltransferases, 99.0 3.9E-09 8.5E-14 95.5 9.9 89 49-143 16-104 (439)
14 PRK05454 glucosyltransferase M 98.9 3.6E-08 7.9E-13 98.1 14.5 132 16-159 40-189 (691)
15 TIGR03111 glyc2_xrt_Gpos1 puta 98.7 8.1E-08 1.8E-12 89.8 9.9 58 84-145 45-102 (439)
16 PRK14583 hmsR N-glycosyltransf 98.3 1.8E-06 3.9E-11 80.6 8.9 53 85-143 72-124 (444)
17 TIGR03469 HonB hopene-associat 98.2 6.6E-06 1.4E-10 75.5 9.3 55 84-143 36-90 (384)
18 PRK11204 N-glycosyltransferase 98.2 1.3E-05 2.9E-10 73.3 9.9 54 84-143 50-103 (420)
19 cd06421 CESA_CelA_like CESA_Ce 98.1 4.8E-06 1.1E-10 68.4 5.9 50 88-140 1-50 (234)
20 TIGR03472 HpnI hopanoid biosyn 98.0 5.3E-05 1.1E-09 69.2 10.0 53 85-143 38-90 (373)
21 cd04190 Chitin_synth_C C-termi 97.9 5.2E-06 1.1E-10 71.1 2.6 41 92-135 1-49 (244)
22 cd04191 Glucan_BSP_ModH Glucan 97.9 2.8E-05 6.2E-10 68.3 7.1 42 90-135 1-46 (254)
23 cd06427 CESA_like_2 CESA_like_ 97.9 1.5E-05 3.3E-10 67.2 5.1 52 88-143 1-52 (241)
24 PRK14716 bacteriophage N4 adso 97.8 0.00013 2.8E-09 70.6 9.7 55 84-144 62-117 (504)
25 cd06437 CESA_CaSu_A2 Cellulose 97.8 5.3E-05 1.2E-09 63.2 5.7 51 88-143 1-51 (232)
26 cd06439 CESA_like_1 CESA_like_ 97.7 3E-05 6.5E-10 65.0 3.6 56 84-143 25-80 (251)
27 cd06438 EpsO_like EpsO protein 97.6 7.9E-05 1.7E-09 60.2 4.7 45 92-140 1-45 (183)
28 PRK11234 nfrB bacteriophage N4 97.6 0.00022 4.7E-09 71.8 8.0 54 84-143 59-113 (727)
29 cd04192 GT_2_like_e Subfamily 97.5 0.00017 3.7E-09 58.7 5.4 47 92-142 1-47 (229)
30 PF13641 Glyco_tranf_2_3: Glyc 97.5 4.1E-05 8.8E-10 63.1 1.7 50 88-143 1-50 (228)
31 cd04196 GT_2_like_d Subfamily 97.4 0.00027 5.9E-09 56.9 5.4 47 91-143 1-47 (214)
32 cd02520 Glucosylceramide_synth 97.4 0.00031 6.7E-09 57.5 5.7 50 88-143 1-50 (196)
33 cd06435 CESA_NdvC_like NdvC_li 97.3 0.00054 1.2E-08 56.8 6.0 42 92-138 2-43 (236)
34 cd04184 GT2_RfbC_Mx_like Myxoc 97.2 0.00061 1.3E-08 54.8 5.5 50 88-142 1-50 (202)
35 COG0463 WcaA Glycosyltransfera 97.2 0.00065 1.4E-08 50.1 4.9 51 87-143 2-52 (291)
36 cd02525 Succinoglycan_BP_ExoA 97.1 0.0011 2.4E-08 54.6 5.8 50 90-143 2-51 (249)
37 cd06434 GT2_HAS Hyaluronan syn 97.0 0.001 2.2E-08 54.9 4.8 46 89-141 1-46 (235)
38 PRK15489 nfrB bacteriophage N4 96.8 0.0028 6E-08 63.9 7.2 46 84-135 67-116 (703)
39 PF00535 Glycos_transf_2: Glyc 96.7 0.0015 3.3E-08 49.4 3.5 49 91-145 1-49 (169)
40 cd06433 GT_2_WfgS_like WfgS an 96.7 0.0031 6.8E-08 49.7 5.3 46 92-143 2-47 (202)
41 PTZ00260 dolichyl-phosphate be 96.7 0.0093 2E-07 54.3 9.1 55 85-143 67-127 (333)
42 cd06423 CESA_like CESA_like is 96.7 0.0026 5.6E-08 47.9 4.6 46 92-143 1-46 (180)
43 PRK10073 putative glycosyl tra 96.5 0.0049 1.1E-07 55.9 5.5 51 87-143 5-55 (328)
44 PRK10018 putative glycosyl tra 96.5 0.0057 1.2E-07 54.6 5.8 44 86-135 3-46 (279)
45 PLN02726 dolichyl-phosphate be 96.5 0.0058 1.2E-07 51.8 5.6 55 85-143 6-60 (243)
46 cd04186 GT_2_like_c Subfamily 96.5 0.0053 1.1E-07 47.0 4.9 46 92-143 1-46 (166)
47 cd04185 GT_2_like_b Subfamily 96.4 0.004 8.8E-08 50.4 4.0 46 92-143 1-46 (202)
48 cd02522 GT_2_like_a GT_2_like_ 96.3 0.0062 1.3E-07 49.6 4.8 48 90-143 1-48 (221)
49 cd06913 beta3GnTL1_like Beta 1 96.3 0.0075 1.6E-07 49.8 5.3 47 92-143 1-47 (219)
50 cd06436 GlcNAc-1-P_transferase 96.2 0.006 1.3E-07 50.0 4.3 44 92-142 1-44 (191)
51 cd04195 GT2_AmsE_like GT2_AmsE 96.2 0.011 2.4E-07 47.5 5.5 43 92-139 2-45 (201)
52 cd06420 GT2_Chondriotin_Pol_N 96.1 0.011 2.4E-07 46.7 5.1 46 92-143 1-46 (182)
53 cd02510 pp-GalNAc-T pp-GalNAc- 96.0 0.01 2.2E-07 51.9 5.0 49 92-143 2-50 (299)
54 cd04179 DPM_DPG-synthase_like 95.9 0.013 2.9E-07 46.2 4.6 48 92-143 1-48 (185)
55 PRK13915 putative glucosyl-3-p 95.9 0.013 2.9E-07 52.8 5.1 55 85-143 28-82 (306)
56 PRK10063 putative glycosyl tra 95.8 0.013 2.7E-07 51.0 4.5 52 88-143 1-53 (248)
57 cd06442 DPM1_like DPM1_like re 95.4 0.024 5.2E-07 46.2 4.6 46 92-142 1-46 (224)
58 cd04188 DPG_synthase DPG_synth 95.1 0.025 5.3E-07 46.4 3.8 48 92-143 1-50 (211)
59 cd00761 Glyco_tranf_GTA_type G 94.6 0.081 1.8E-06 38.7 5.0 48 92-145 1-48 (156)
60 cd04187 DPM1_like_bac Bacteria 94.4 0.075 1.6E-06 42.3 4.9 46 92-143 1-49 (181)
61 PRK10714 undecaprenyl phosphat 94.0 0.076 1.6E-06 48.1 4.6 54 87-145 5-60 (325)
62 COG2943 MdoH Membrane glycosyl 93.2 2.5 5.4E-05 42.4 13.5 135 15-162 62-212 (736)
63 cd02511 Beta4Glucosyltransfera 92.9 0.17 3.6E-06 42.7 4.7 41 90-139 2-42 (229)
64 cd02514 GT13_GLCNAC-TI GT13_GL 89.0 0.69 1.5E-05 43.0 5.0 42 91-136 3-44 (334)
65 cd02526 GT2_RfbF_like RfbF is 86.2 1.1 2.4E-05 36.8 4.1 37 92-136 1-37 (237)
66 COG1216 Predicted glycosyltran 82.6 2.9 6.4E-05 37.0 5.5 51 88-144 3-53 (305)
67 KOG2977 Glycosyltransferase [G 78.5 7 0.00015 36.3 6.6 59 89-161 68-132 (323)
68 PF03142 Chitin_synth_2: Chiti 74.5 4.7 0.0001 39.8 4.7 43 85-130 22-65 (527)
69 PF09623 Cas_NE0113: CRISPR-as 72.5 32 0.00068 30.4 8.9 109 92-211 4-117 (224)
70 KOG2978 Dolichol-phosphate man 63.8 7.7 0.00017 34.3 3.2 48 90-140 5-52 (238)
71 KOG3738 Predicted polypeptide 58.6 11 0.00024 36.8 3.5 51 84-137 120-170 (559)
72 PF15632 ATPgrasp_Ter: ATP-gra 53.3 22 0.00047 33.1 4.5 55 89-160 66-120 (329)
73 PF03071 GNT-I: GNT-I family; 51.4 14 0.0003 35.8 3.1 48 85-137 90-138 (434)
74 PF10111 Glyco_tranf_2_2: Glyc 49.4 39 0.00085 29.6 5.4 44 92-137 2-48 (281)
75 PF02012 BNR: BNR/Asp-box repe 47.2 11 0.00025 18.9 0.9 9 127-135 1-9 (12)
76 PRK11039 putative dehydrogenas 46.1 26 0.00057 28.9 3.5 21 141-161 115-135 (140)
77 PF06853 DUF1249: Protein of u 45.6 31 0.00066 27.5 3.7 22 140-161 96-117 (120)
78 PF08861 DUF1828: Domain of un 42.7 17 0.00037 27.0 1.7 40 125-164 21-64 (90)
79 TIGR01556 rhamnosyltran L-rham 39.6 35 0.00075 29.3 3.4 32 96-135 2-33 (281)
80 PRK09121 5-methyltetrahydropte 39.4 85 0.0018 28.9 6.1 53 94-149 275-335 (339)
81 KOG3737 Predicted polypeptide 38.8 33 0.00072 33.6 3.4 48 84-134 151-198 (603)
82 PF04741 InvH: InvH outer memb 38.4 12 0.00026 30.7 0.4 79 109-206 43-127 (147)
83 KOG3177 Oligoketide cyclase/li 37.5 17 0.00037 32.3 1.2 40 132-171 77-116 (227)
84 PF05890 Ebp2: Eukaryotic rRNA 35.1 18 0.00039 32.8 0.9 40 130-172 73-113 (271)
85 COG3151 Uncharacterized protei 30.1 71 0.0015 26.6 3.6 60 85-161 74-140 (147)
86 PF08844 DUF1815: Domain of un 29.4 51 0.0011 26.0 2.5 15 118-135 30-44 (105)
87 COG3095 MukE Uncharacterized p 29.0 32 0.00069 30.1 1.5 27 146-172 47-74 (238)
88 PF11720 Inhibitor_I78: Peptid 28.9 38 0.00083 23.6 1.6 20 114-133 34-53 (60)
89 PF12344 UvrB: Ultra-violet re 28.3 73 0.0016 21.5 2.8 26 139-164 12-37 (44)
90 PF06675 DUF1177: Protein of u 27.9 1E+02 0.0022 28.3 4.5 53 129-203 220-272 (276)
91 cd06432 GT8_HUGT1_C_like The C 27.7 1.1E+02 0.0023 26.9 4.6 46 91-140 2-47 (248)
92 PRK05256 condesin subunit E; P 27.0 1.2E+02 0.0026 27.3 4.7 26 147-172 50-76 (238)
93 PF01717 Meth_synt_2: Cobalami 27.0 1.2E+02 0.0025 27.3 4.8 39 94-135 266-304 (324)
94 COG4226 HicB Predicted nucleas 26.4 47 0.001 26.6 1.9 42 126-167 26-70 (111)
95 COG5227 SMT3 Ubiquitin-like pr 26.1 30 0.00066 27.1 0.7 49 122-171 23-71 (103)
96 PF02042 RWP-RK: RWP-RK domain 26.1 1.2E+02 0.0025 21.1 3.6 26 141-167 18-47 (52)
97 PLN02475 5-methyltetrahydropte 25.9 1.6E+02 0.0036 30.5 6.1 56 88-149 696-759 (766)
98 COG3605 PtsP Signal transducti 25.8 24 0.00052 36.0 0.1 39 94-135 323-361 (756)
99 TIGR02584 cas_NE0113 CRISPR-as 25.8 2.8E+02 0.0061 24.5 6.8 69 92-164 1-72 (209)
100 smart00674 CENPB Putative DNA- 25.5 60 0.0013 22.0 2.1 13 150-162 51-64 (66)
101 cd08802 Death_UNC5B Death doma 24.3 1.1E+02 0.0023 23.2 3.4 51 150-207 22-79 (84)
102 cd01457 vWA_ORF176_type VWA OR 23.8 2.3E+02 0.0049 23.3 5.7 35 125-159 5-45 (199)
103 KOG3736 Polypeptide N-acetylga 22.5 36 0.00078 34.2 0.7 51 84-137 138-188 (578)
104 PF13704 Glyco_tranf_2_4: Glyc 22.5 1.7E+02 0.0037 20.9 4.2 31 105-139 5-35 (97)
105 PF13812 PPR_3: Pentatricopept 21.9 78 0.0017 17.9 1.9 19 187-205 16-34 (34)
106 cd08781 Death_UNC5-like Death 21.7 1.1E+02 0.0024 22.6 3.0 49 150-205 22-77 (83)
107 PF13041 PPR_2: PPR repeat fam 21.3 81 0.0017 20.1 2.0 22 187-208 18-39 (50)
108 cd04194 GT8_A4GalT_like A4GalT 21.3 1.4E+02 0.0029 25.4 3.9 49 91-143 2-50 (248)
109 PRK06520 5-methyltetrahydropte 21.0 1.8E+02 0.0038 27.2 4.9 39 94-135 302-340 (368)
110 PRK05852 acyl-CoA synthetase; 20.9 2.4E+02 0.0051 26.3 5.7 51 107-163 17-68 (534)
111 KOG2387 CTP synthase (UTP-ammo 20.9 56 0.0012 32.4 1.6 16 120-135 52-67 (585)
112 PRK03982 heat shock protein Ht 20.8 6E+02 0.013 22.6 8.1 36 59-95 50-91 (288)
113 COG2014 Uncharacterized conser 20.7 55 0.0012 29.4 1.4 25 72-98 149-173 (250)
114 TIGR00756 PPR pentatricopeptid 20.2 97 0.0021 17.1 2.0 20 187-206 15-34 (35)
115 PF00728 Glyco_hydro_20: Glyco 20.2 1.1E+02 0.0024 27.3 3.2 58 103-162 16-89 (351)
116 KOG0075 GTP-binding ADP-ribosy 20.0 97 0.0021 26.6 2.6 46 106-162 48-93 (186)
No 1
>PLN02195 cellulose synthase A
Probab=100.00 E-value=5.5e-71 Score=549.48 Aligned_cols=200 Identities=40% Similarity=0.694 Sum_probs=190.9
Q ss_pred CCCceeeeecCchh---hHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
.+||++++++++++ ||+++++++++|+++++||++|..+.+. .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 236 (977)
T PLN02195 157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID 236 (977)
T ss_pred cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence 36899999999984 9999999999999999999999988876 7999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhH
Q 028216 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (212)
Q Consensus 79 rL~~~~------~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wv 152 (212)
||++|. ++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++||
T Consensus 237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 316 (977)
T PLN02195 237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV 316 (977)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHccc
Q 028216 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLK 202 (212)
Q Consensus 153 pfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~ 202 (212)
||||||||||||||+||+++.+..+++.+++|++||++||+||||||.+.
T Consensus 317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RI 366 (977)
T PLN02195 317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRV 366 (977)
T ss_pred ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876667788999999999999999999875
No 2
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.2e-70 Score=550.80 Aligned_cols=201 Identities=41% Similarity=0.710 Sum_probs=191.1
Q ss_pred CCCceeeeecCch---hhHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 3 SLPLYEKVIAKNT---THRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 3 ~~pL~~~~~~~~~---~~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
.+||+++++++++ .||+++++++++|+++++||++|..+.++ .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 254 ~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~d 333 (1079)
T PLN02638 254 RQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLPVNRETYLD 333 (1079)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccccccccccCHH
Confidence 4689999999998 49999999999999999999999987765 4999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhH
Q 028216 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (212)
Q Consensus 79 rL~~~~------~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wv 152 (212)
||++|. ++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++||
T Consensus 334 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 413 (1079)
T PLN02638 334 RLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWV 413 (1079)
T ss_pred HHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 153 pfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
||||||||||||||+||+++.++.+++.+++|++||++||+||||||.+..
T Consensus 414 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe 464 (1079)
T PLN02638 414 PFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRIN 464 (1079)
T ss_pred ccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877788888999999999999999998753
No 3
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=1.4e-70 Score=549.10 Aligned_cols=201 Identities=40% Similarity=0.687 Sum_probs=189.5
Q ss_pred CCCceeeeecCchh---hHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
.+||++++++++++ ||+++++++++|+++++||++|..+.++ .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 192 ~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 271 (1044)
T PLN02915 192 RQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLD 271 (1044)
T ss_pred CCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHH
Confidence 47999999999984 9999999999999999999999665555 4999999999999999999999999999999999
Q ss_pred chhhc---c---CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhH
Q 028216 79 RLQER---I---KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (212)
Q Consensus 79 rL~~~---~---~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wv 152 (212)
||++| + ++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++||
T Consensus 272 rL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~Wv 351 (1044)
T PLN02915 272 RLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWV 351 (1044)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhc
Confidence 99976 2 24999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 153 pfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
||||||||||||||+||+++.++.+++.+++|++||++||+||||||.+..
T Consensus 352 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe 402 (1044)
T PLN02915 352 PFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRIN 402 (1044)
T ss_pred chhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877788888999999999999999998753
No 4
>PLN02436 cellulose synthase A
Probab=100.00 E-value=1.2e-70 Score=549.90 Aligned_cols=200 Identities=40% Similarity=0.697 Sum_probs=190.5
Q ss_pred CCCceeeeecCchh---hHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
.+||++++++++++ ||+++++++++|+++++||++|..+.+. .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 270 ~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~d 349 (1094)
T PLN02436 270 RQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLD 349 (1094)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHH
Confidence 46899999999984 9999999999999999999999988765 4999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhH
Q 028216 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (212)
Q Consensus 79 rL~~~~------~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wv 152 (212)
||++|. ++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++||
T Consensus 350 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~Wv 429 (1094)
T PLN02436 350 RLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWV 429 (1094)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHccc
Q 028216 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLK 202 (212)
Q Consensus 153 pfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~ 202 (212)
||||||||||||||+||+++.++.+++.+++|++||++||+||||||.+.
T Consensus 430 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RI 479 (1094)
T PLN02436 430 PFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKI 479 (1094)
T ss_pred ccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887777778899999999999999999874
No 5
>PLN02400 cellulose synthase
Probab=100.00 E-value=1.6e-70 Score=550.00 Aligned_cols=201 Identities=39% Similarity=0.668 Sum_probs=191.1
Q ss_pred CCCceeeeecCch---hhHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 3 SLPLYEKVIAKNT---THRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 3 ~~pL~~~~~~~~~---~~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
.+||+++++++++ .||+++++++++|+++++||++|..+.+. .|+++++||+||+|+|+|+|+.||+|++|.+++|
T Consensus 261 ~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 340 (1085)
T PLN02400 261 RLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLD 340 (1085)
T ss_pred cCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHH
Confidence 4799999999998 49999999999999999999999988765 4999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhH
Q 028216 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (212)
Q Consensus 79 rL~~~~------~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wv 152 (212)
||++|. ++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.|||+||++||
T Consensus 341 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~Wv 420 (1085)
T PLN02400 341 RLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWV 420 (1085)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 153 pfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
||||||||||||||+||+++.++.+++.+++|++||++||+||||||.+..
T Consensus 421 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe 471 (1085)
T PLN02400 421 PFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRIN 471 (1085)
T ss_pred chhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998767787889999999999999999998754
No 6
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.5e-70 Score=548.67 Aligned_cols=201 Identities=41% Similarity=0.688 Sum_probs=190.6
Q ss_pred CCCceeeeecCchh---hHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
.+||++++++++++ ||+++++++++|+++++||++|..+.+. .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 236 ~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~d 315 (1040)
T PLN02189 236 RQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLD 315 (1040)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHH
Confidence 57999999999984 9999999999999999999999887665 6999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhH
Q 028216 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (212)
Q Consensus 79 rL~~~~------~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wv 152 (212)
||++|. ++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++||
T Consensus 316 rL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 395 (1040)
T PLN02189 316 RLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWV 395 (1040)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 24999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 153 pfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
||||||||||||||+||+++.+..+++.+++|++||++||+||||||.+..
T Consensus 396 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~ 446 (1040)
T PLN02189 396 PFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRIN 446 (1040)
T ss_pred ccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877788888999999999999999998754
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=3.5e-70 Score=547.93 Aligned_cols=200 Identities=38% Similarity=0.638 Sum_probs=189.1
Q ss_pred CCceeeeecCchh---hHHHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccc
Q 028216 4 LPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQR 79 (212)
Q Consensus 4 ~pL~~~~~~~~~~---~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~dr 79 (212)
+||++++++++++ ||+++++++++|+++++||++|....+. .|+++++||+||+|+|+|+|+.||+|++|.+++|+
T Consensus 268 ~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~r 347 (1135)
T PLN02248 268 RPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAV 347 (1135)
T ss_pred CCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHH
Confidence 6899999999984 9999999999999999999999554443 69999999999999999999999999999999999
Q ss_pred hhhcc-----------CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHH
Q 028216 80 LQERI-----------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFA 148 (212)
Q Consensus 80 L~~~~-----------~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa 148 (212)
|+++. ++||+|||||||+||+||||.+|+|||||+||+|||+||++||||||||+.+||+||.||++||
T Consensus 348 L~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA 427 (1135)
T PLN02248 348 LKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFA 427 (1135)
T ss_pred HHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHH
Confidence 99873 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 149 KLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 149 ~~wvpfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
+.||||||||||||||||+||+++.+..+++..++|++||++||+||||||.+..
T Consensus 428 ~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe 482 (1135)
T PLN02248 428 RIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRIN 482 (1135)
T ss_pred HhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877777889999999999999999998763
No 8
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=2.2e-69 Score=528.40 Aligned_cols=199 Identities=59% Similarity=1.069 Sum_probs=188.9
Q ss_pred CCCCceeeeecCchhhHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchh
Q 028216 2 SSLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQ 81 (212)
Q Consensus 2 ~~~pL~~~~~~~~~~~R~~~~~~l~~l~~yl~wR~~~tl~~~~~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~drL~ 81 (212)
+++||||+++.|++++|++.++++++++.|++||+++.++.+..|+++++||+||+|+|+|+|+.+|+|++|.++|++|+
T Consensus 7 ~~~pL~~~~~~~~~~~r~~~~~vl~~~~~~l~~R~~~~~~~~~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p~~l~ 86 (756)
T PLN02190 7 SLPPLCERISHKSYFLRAVDLTILGLLFSLLLYRILHMSENDTVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYPDRLD 86 (756)
T ss_pred CCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHhccceeeecCCCCCcHHHH
Confidence 45799999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCc
Q 028216 82 ERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR 161 (212)
Q Consensus 82 ~~~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~ 161 (212)
++.++||+||||||||||.||||++|+|||+|+||+|||+||++|||||||||++||+||.||++||++|||||||||||
T Consensus 87 ~r~~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~Ie 166 (756)
T PLN02190 87 ERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVR 166 (756)
T ss_pred HhhccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCCC
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 162 VRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 162 ~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
|||||+||+++. .+..+++|++||++||+||||||.+..
T Consensus 167 pRaPe~YF~~~~---~~~~~~~f~~e~~~~K~eYee~k~ri~ 205 (756)
T PLN02190 167 VRAPFRYFLNPP---VATEDSEFSKDWEMTKREYEKLSRKVE 205 (756)
T ss_pred cCCHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999753 222457999999999999999997754
No 9
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=4.2e-68 Score=519.99 Aligned_cols=194 Identities=33% Similarity=0.596 Sum_probs=182.9
Q ss_pred CCCCceeeeecCch-hhHHHHHHHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 028216 2 SSLPLYEKVIAKNT-THRFLDVTILFLLLSLLFYRLLSLKHNGF--AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (212)
Q Consensus 2 ~~~pL~~~~~~~~~-~~R~~~~~~l~~l~~yl~wR~~~tl~~~~--~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~d 78 (212)
+.+||||+++.+++ +||+++++++++|+++++||+++.+..+. .|+++++||+||+|+|+++|+.||+|++|.+++|
T Consensus 10 ~~~pL~~~~~~~~~~~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~~~~ 89 (734)
T PLN02893 10 GAPPLHTCHPMRRTIANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRVFIE 89 (734)
T ss_pred CCCCceeeeecCCchHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCccccccccccCHH
Confidence 35799999999999 59999999999999999999999887763 7999999999999999999999999999999999
Q ss_pred chhhc--cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHH
Q 028216 79 RLQER--IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCK 156 (212)
Q Consensus 79 rL~~~--~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~ 156 (212)
||+++ +++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++|+||||
T Consensus 90 ~L~~~~~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCr 169 (734)
T PLN02893 90 HLEHYAKESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFATHWLPFCK 169 (734)
T ss_pred HHhhhcccccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHHhhccccc
Confidence 99865 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 157 KYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 157 k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
||||||||||+||+++. ++|.+||++||+||||||.+..
T Consensus 170 k~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~ 208 (734)
T PLN02893 170 KNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVE 208 (734)
T ss_pred ccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999872 3578999999999999998754
No 10
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.3e-47 Score=374.40 Aligned_cols=113 Identities=53% Similarity=0.840 Sum_probs=110.2
Q ss_pred ccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCcccCccchh
Q 028216 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF 169 (212)
Q Consensus 90 VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~r~P~~YF 169 (212)
|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.||++||++||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChhhHHHHHHHHHHHHHHHccc
Q 028216 170 LRESDEPPCASSWEFQQDWEKMKSTRDFAETLK 202 (212)
Q Consensus 170 ~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~ 202 (212)
+++.++.+++.+++|++||++||+||||||.+.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri 113 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRI 113 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHH
Confidence 999888888889999999999999999999765
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.86 E-value=2e-21 Score=191.24 Aligned_cols=146 Identities=22% Similarity=0.305 Sum_probs=119.9
Q ss_pred CchhhHHHHHHHHHHH-HHHHHHHhcCCCCCch-----HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchhhccCC
Q 028216 13 KNTTHRFLDVTILFLL-LSLLFYRLLSLKHNGF-----AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKE 86 (212)
Q Consensus 13 ~~~~~R~~~~~~l~~l-~~yl~wR~~~tl~~~~-----~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~drL~~~~~~ 86 (212)
+++..|++.++.++++ ++|++||+++|++.+. ..++++++|+++.++.+++.+..++|.+|++.+. +.+.+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~ 129 (713)
T TIGR03030 52 NGKRPRLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPL--PLDPEE 129 (713)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCC--CCCccc
Confidence 3445577766666665 7899999999999753 3578999999999999999999999999877542 233578
Q ss_pred CCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHh----HHHHHHHHHHhHHHHHhcCCcc
Q 028216 87 LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS----LVEASKFAKLWVPFCKKYNIRV 162 (212)
Q Consensus 87 lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~a----l~Eaa~Fa~~wvpfC~k~~V~~ 162 (212)
+|+|||+||||| |+++++.+|+.|++++|||.+|+.|||+|||+++.|... ..|+.+-+..+..+|+++||..
T Consensus 130 ~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~y 206 (713)
T TIGR03030 130 WPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNY 206 (713)
T ss_pred CCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEE
Confidence 999999999999 999999999999999999999999999999999988643 3333334457889999999884
Q ss_pred c
Q 028216 163 R 163 (212)
Q Consensus 163 r 163 (212)
.
T Consensus 207 i 207 (713)
T TIGR03030 207 I 207 (713)
T ss_pred E
Confidence 4
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.84 E-value=2.2e-20 Score=187.49 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=107.8
Q ss_pred cCchhhHHHHHHHH-HHHHHHHHHHhcCCCCCch-----HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchhhccC
Q 028216 12 AKNTTHRFLDVTIL-FLLLSLLFYRLLSLKHNGF-----AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIK 85 (212)
Q Consensus 12 ~~~~~~R~~~~~~l-~~l~~yl~wR~~~tl~~~~-----~wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~drL~~~~~ 85 (212)
.++++.|++.+++. ++.++|++||+++|++.+. ..++++++|+++.++.+++.+..++|.+|++.+ ++...+
T Consensus 180 ~~~~~~~~~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~~~~~~ 257 (852)
T PRK11498 180 MPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--LPKDMS 257 (852)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CCcccC
Confidence 44555565554444 4457899999999999763 357899999999999999999999999887654 344456
Q ss_pred CCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCcc
Q 028216 86 ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRV 162 (212)
Q Consensus 86 ~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~ 162 (212)
.+|+|||+||||| ||.+++.+|+.|++++|||.+|+.|||+|||+++-+ ..+|+++||..
T Consensus 258 ~~P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t--------------~~la~~~~v~y 317 (852)
T PRK11498 258 LWPTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF--------------RQFAQEVGVKY 317 (852)
T ss_pred CCCcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH--------------HHHHHHCCcEE
Confidence 7999999999999 999999999999999999999999999999999732 23677777764
No 13
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=3.9e-09 Score=95.54 Aligned_cols=89 Identities=26% Similarity=0.257 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCccchhhccCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEE
Q 028216 49 AFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYV 128 (212)
Q Consensus 49 l~~aEl~~~~~wll~~~~~w~Pv~R~~~~drL~~~~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv 128 (212)
.+..++........+.+....+.++...+..-.. ...+|.|||+||+|| |+++++.+|+.|+.++||| +..|+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp--~~eviv 89 (439)
T COG1215 16 LILLLILSIITLLLGYLLLVLPLSRPRKKLPKDA-DKLLPKVSVIIPAYN---EEPEVLEETLESLLSQDYP--RYEVIV 89 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCCCCcc-cccCCceEEEEecCC---CchhhHHHHHHHHHhCCCC--CceEEE
Confidence 3344444444444455666666666554422111 122699999999999 9999999999999999999 589999
Q ss_pred cCCCCCchhhHhHHH
Q 028216 129 SDDGCSPLNFYSLVE 143 (212)
Q Consensus 129 ~DDG~s~~t~~al~E 143 (212)
+|||+++-+.+-+.|
T Consensus 90 v~d~~~d~~~~~~~~ 104 (439)
T COG1215 90 VDDGSTDETYEILEE 104 (439)
T ss_pred ECCCCChhHHHHHHH
Confidence 999999988776655
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.88 E-value=3.6e-08 Score=98.05 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCch-H---------HHHHHHHHHHHHHHHHHhhhhhcccccCCCCc----cchh
Q 028216 16 THRFLDVTILFLLLSLLFYRLLSLKHNGF-A---------WFVAFLCESCFTFVWVLITGTKWTPISYNTYP----QRLQ 81 (212)
Q Consensus 16 ~~R~~~~~~l~~l~~yl~wR~~~tl~~~~-~---------wl~l~~aEl~~~~~wll~~~~~w~Pv~R~~~~----drL~ 81 (212)
..|++.++..+++++|..|+...+++.+. . ..+++..+.+.+.+-+++.+.... .|.+.. ..-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~~~~~~~~~~ 117 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKYSISASAAGD 117 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcccCCcccccC
Confidence 47888888888889999999999988742 1 134556677766666777655432 221111 0000
Q ss_pred hccCCCCCccEEEeCCCCCCCchHhHHHHH----HHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHh
Q 028216 82 ERIKELPPLDIFVTTADPYLEPPILTVNTV----LSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKK 157 (212)
Q Consensus 82 ~~~~~lP~VDVFI~TydP~~EP~~vv~~TV----ls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k 157 (212)
......|.|+|+||+|| |+++.+..++ .|..+.||| +++.++|+|||.++-+.. .|. +.|..+|++
T Consensus 118 ~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~e~----~~~~~L~~~ 187 (691)
T PRK05454 118 PPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--AEE----AAWLELRAE 187 (691)
T ss_pred CCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--HHH----HHHHHHHHh
Confidence 11356899999999999 9997655554 455568897 589999999999986533 221 235568988
Q ss_pred cC
Q 028216 158 YN 159 (212)
Q Consensus 158 ~~ 159 (212)
++
T Consensus 188 ~~ 189 (691)
T PRK05454 188 LG 189 (691)
T ss_pred cC
Confidence 85
No 15
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.70 E-value=8.1e-08 Score=89.77 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=51.8
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHH
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa 145 (212)
.+.+|.|+|+||+|| |. ..+.+|+.|+.+.+||.+++.|+|.|||+++-|.+.+.+++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~ 102 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ 102 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH
Confidence 367899999999999 88 78999999999999999999999999999999877666543
No 16
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.35 E-value=1.8e-06 Score=80.64 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=46.5
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
+..|.|+|+||+|| |+.. +.+|+.|+++.||| ++.|+|.|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~~-i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~ 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGLN-ARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHHH-HHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 45799999999999 9854 78999999999999 589999999999987766555
No 17
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.21 E-value=6.6e-06 Score=75.53 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=48.1
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
.+..|.|.|.||+|| |. ..+.+++-|+++.|||. ++.|+|.|||.++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~ 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH
Confidence 467999999999999 87 77899999999999995 489999999999988766555
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.15 E-value=1.3e-05 Score=73.30 Aligned_cols=54 Identities=30% Similarity=0.341 Sum_probs=47.4
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
....|.|.|.||+|| |+ +.+.+|+.|+++.+|| +..|+|.|||+++-|.+.+.+
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~ 103 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR 103 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 457899999999999 86 6789999999999999 689999999999987766554
No 19
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.13 E-value=4.8e-06 Score=68.39 Aligned_cols=50 Identities=38% Similarity=0.614 Sum_probs=45.4
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHh
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS 140 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~a 140 (212)
|.|.|.||+|| |+...+..++.|+++.+||.+++.|+|.|||.++-|.+-
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~ 50 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRAL 50 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHH
Confidence 78999999999 988899999999999999988899999999988765543
No 20
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.96 E-value=5.3e-05 Score=69.25 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
...|.|.|+||+|| |.. .+.+++.|+++.|||. +.|.+.||+.++-|...+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~ 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH
Confidence 45899999999999 875 5789999999999994 89999999998877765544
No 21
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=97.93 E-value=5.2e-06 Score=71.05 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=39.5
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCC--------CCCceEEEcCCCCCc
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYP--------AHRLACYVSDDGCSP 135 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP--------~~Kl~vYv~DDG~s~ 135 (212)
|.||.|| |++.++.+||.|+++.||| .+|+.|+|.|||+++
T Consensus 1 v~ip~yN---E~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d 49 (244)
T cd04190 1 VCVTMYN---EDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK 49 (244)
T ss_pred CEEeeec---CCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc
Confidence 6899999 9989999999999999999 799999999999998
No 22
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=97.92 E-value=2.8e-05 Score=68.31 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=35.6
Q ss_pred ccEEEeCCCCCCCchHhHHHHHHHhhc----CCCCCCCceEEEcCCCCCc
Q 028216 90 LDIFVTTADPYLEPPILTVNTVLSLLA----VDYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 90 VDVFI~TydP~~EP~~vv~~TVls~la----lDYP~~Kl~vYv~DDG~s~ 135 (212)
|.|+||+|| ||+.++.+|+.+... .|| ..++.|||+|||..+
T Consensus 1 ~SIliP~~n---e~~~~l~~~l~~~~~~~~~~~~-~~~~eI~vldD~~d~ 46 (254)
T cd04191 1 TAIVMPVYN---EDPARVFAGLRAMYESLAKTGL-ADHFDFFILSDTRDP 46 (254)
T ss_pred CEEEEeCCC---CCHHHHHHHHHHHHHHHHhcCC-cCceEEEEECCCCCh
Confidence 679999999 999999999998764 355 236999999999886
No 23
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=97.91 E-value=1.5e-05 Score=67.21 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=46.4
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.|.||+|| |+ ..+..|+.|+++.+||.+++.|.|.|||+++.|.+-+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH
Confidence 78999999999 97 778999999999999988899999999999987765544
No 24
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=97.78 E-value=0.00013 Score=70.62 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=48.0
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHh-hcCCCCCCCceEEEcCCCCCchhhHhHHHH
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSL-LAVDYPAHRLACYVSDDGCSPLNFYSLVEA 144 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~-lalDYP~~Kl~vYv~DDG~s~~t~~al~Ea 144 (212)
....|.|+|+||.|| |. .++.+||-++ .++||| ++.|+|.|||+++-|...+.+.
T Consensus 62 ~~~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l 117 (504)
T PRK14716 62 SVPEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL 117 (504)
T ss_pred cCCCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH
Confidence 345999999999999 97 7899999986 479997 8999999999999988877763
No 25
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.75 E-value=5.3e-05 Score=63.16 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=45.1
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.|.||+|| |. ..+..++.|+++.+||.+++.|.|.|| +++-|...+.+
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~ 51 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLARE 51 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHH
Confidence 67999999999 86 678999999999999998899999998 88888777665
No 26
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.71 E-value=3e-05 Score=64.99 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=48.6
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
.+..|.|.|.||||| |. ..+.+++.|+.+.+||.+++.+.|.|||+++-|...+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH
Confidence 467899999999999 76 678999999999999988899999999999977665443
No 27
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.62 E-value=7.9e-05 Score=60.22 Aligned_cols=45 Identities=31% Similarity=0.416 Sum_probs=40.5
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHh
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS 140 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~a 140 (212)
|+||+|| |+ ..+..|+-++.+.+||.+++.|+|.|||+++-|.+.
T Consensus 1 VvIp~~n---e~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~ 45 (183)
T cd06438 1 ILIPAHN---EE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQV 45 (183)
T ss_pred CEEeccc---hH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHH
Confidence 6899999 88 788999999999999988899999999999877653
No 28
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=97.57 E-value=0.00022 Score=71.84 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=43.3
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhh-cCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLL-AVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~l-alDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
+++.|.|.|+||.|| |. .++.+|+.+++ ++||| ++.|++.||+..+-|...+.+
T Consensus 59 ~~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP--~~eI~vi~~~nD~~T~~~~~~ 113 (727)
T PRK11234 59 KPDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYE--NYHIFVGTYPNDPATQADVDA 113 (727)
T ss_pred cCCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCC--CeEEEEEecCCChhHHHHHHH
Confidence 467799999999999 98 78889999876 79999 499999976555555555444
No 29
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.52 E-value=0.00017 Score=58.69 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=41.6
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~ 142 (212)
|.||||| |+ ..+.+|+-|++..+||.+++.|+|.|||.++-|...+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~ 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH
Confidence 6899999 87 77999999999999998889999999999987766544
No 30
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.51 E-value=4.1e-05 Score=63.13 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=37.2
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.|.||+|| |+. .+.+++.|+++.+|| ++.|+|.|||+++-+...+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRA 50 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHH
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHH
Confidence 78999999999 875 889999999999996 699999999998877655443
No 31
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.43 E-value=0.00027 Score=56.92 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=41.1
Q ss_pred cEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 91 DVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
.|.||||| |+ ..+.+++.|++..+|| ++.|+|.|||+++-|.+.+.+
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~ 47 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKE 47 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHH
Confidence 48999999 87 7789999999999999 799999999999987766554
No 32
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.41 E-value=0.00031 Score=57.45 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.|.||+|| |... +.+++-|+++.+|| .+.+.|.|||+++-|...+.+
T Consensus 1 p~vsviip~~n---~~~~-l~~~L~sl~~q~~~--~~eiivVdd~s~d~t~~~~~~ 50 (196)
T cd02520 1 PGVSILKPLCG---VDPN-LYENLESFFQQDYP--KYEILFCVQDEDDPAIPVVRK 50 (196)
T ss_pred CCeEEEEecCC---CCcc-HHHHHHHHHhccCC--CeEEEEEeCCCcchHHHHHHH
Confidence 77999999999 8754 78999999999999 489999999999877665444
No 33
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.30 E-value=0.00054 Score=56.83 Aligned_cols=42 Identities=33% Similarity=0.504 Sum_probs=38.7
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhh
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNF 138 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~ 138 (212)
|+||||| |++..+.+++.|++..+|| +..|+|.|||.++-|.
T Consensus 2 iiip~~n---e~~~~l~~~l~sl~~q~~~--~~eiiVvdd~s~D~t~ 43 (236)
T cd06435 2 IHVPCYE---EPPEMVKETLDSLAALDYP--NFEVIVIDNNTKDEAL 43 (236)
T ss_pred eeEeeCC---CcHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCchhH
Confidence 7899999 9989999999999999999 5789999999998765
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.24 E-value=0.00061 Score=54.80 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=42.5
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~ 142 (212)
|.|.|.||||| |....+.+|+.|+++.+|| .+.|.|.|||.++-+...+.
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~ 50 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVL 50 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHH
Confidence 67999999999 8777899999999999998 57899999999886554433
No 35
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.00065 Score=50.08 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=44.5
Q ss_pred CCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 87 LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 87 lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
.|.+.|.||||| |+ ..+.++|.|++...|+. ..|.|.|||.++-|-+-+.+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~ 52 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIE 52 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHH
Confidence 578999999999 77 89999999999999995 56999999999988765544
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.10 E-value=0.0011 Score=54.61 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=43.0
Q ss_pred ccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 90 VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.||||| |+ ..+.+++-++++.+||..+..|+|.|||+++-|...+.+
T Consensus 2 ~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~ 51 (249)
T cd02525 2 VSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE 51 (249)
T ss_pred EEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH
Confidence 789999999 87 567999999999999988899999999999876554444
No 37
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=97.02 E-value=0.001 Score=54.92 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=40.6
Q ss_pred CccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhH
Q 028216 89 PLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSL 141 (212)
Q Consensus 89 ~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al 141 (212)
+|+|.||||| |++..+.+|+.|+.+.+ +..|+|.|||.++-+...+
T Consensus 1 ~isVvIp~~n---e~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l 46 (235)
T cd06434 1 DVTVIIPVYD---EDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSIL 46 (235)
T ss_pred CeEEEEeecC---CChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHH
Confidence 4899999999 99999999999999988 3689999999998766655
No 38
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=96.85 E-value=0.0028 Score=63.86 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=39.8
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhh-cCCCCCCCceEEE---cCCCCCc
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLL-AVDYPAHRLACYV---SDDGCSP 135 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~l-alDYP~~Kl~vYv---~DDG~s~ 135 (212)
+.+.|.|.|+||.|| |. +++.+||-+++ ++||| ++.|+| -|||.+.
T Consensus 67 ~~~~~~vsIlVPa~n---E~-~VI~~~v~~ll~~ldYp--~~~I~v~~~~nD~~T~ 116 (703)
T PRK15489 67 ERDEQPLAIMVPAWK---EY-DVIAKMIENMLATLDYR--RYVIFVGTYPNDAETI 116 (703)
T ss_pred ccCCCceEEEEeCCC---cH-HHHHHHHHHHHhcCCCC--CeEEEEEecCCCccHH
Confidence 467899999999999 97 89999999986 89999 678998 6998554
No 39
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.74 E-value=0.0015 Score=49.40 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=38.4
Q ss_pred cEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHH
Q 028216 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (212)
Q Consensus 91 DVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa 145 (212)
+|.||||| | ...+.+|+.|++...++ ...|+|.|||.++-|...+.+..
T Consensus 1 Svvip~~n---~-~~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~~~~~~~~~~ 49 (169)
T PF00535_consen 1 SVVIPTYN---E-AEYLERTLESLLKQTDP--DFEIIVVDDGSTDETEEILEEYA 49 (169)
T ss_dssp EEEEEESS-----TTTHHHHHHHHHHHSGC--EEEEEEEECS-SSSHHHHHHHHH
T ss_pred CEEEEeeC---C-HHHHHHHHHHHhhccCC--CEEEEEecccccccccccccccc
Confidence 48999999 7 58888999999888555 78999999999887766655543
No 40
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.74 E-value=0.0031 Score=49.69 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=39.7
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||||| ++ ..+.+++.|+.+..||. +.|+|.|||+++-|.+.+.+
T Consensus 2 ivi~~~n---~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~~ 47 (202)
T cd06433 2 IITPTYN---QA-ETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIKK 47 (202)
T ss_pred EEEeccc---hH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHHH
Confidence 7899999 77 78899999999999984 89999999999987765544
No 41
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=96.74 E-value=0.0093 Score=54.29 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=39.9
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcC------CCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAV------DYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lal------DYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
+..|.|+|.||+|| |... +..++.++.+. ++|.....|+|.|||+++-|.+-+.+
T Consensus 67 ~~~~~isVVIP~yN---e~~~-i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~ 127 (333)
T PTZ00260 67 DSDVDLSIVIPAYN---EEDR-LPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKD 127 (333)
T ss_pred CCCeEEEEEEeeCC---CHHH-HHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHH
Confidence 45788999999999 7643 45555554432 35555689999999999988775444
No 42
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=96.73 E-value=0.0026 Score=47.88 Aligned_cols=46 Identities=39% Similarity=0.532 Sum_probs=40.0
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||||| |+ ..+.+|+.|+++..|+ ...|+|.|||+++.|...+.+
T Consensus 1 Viip~~n---~~-~~l~~~l~sl~~q~~~--~~~iivvdd~s~d~t~~~~~~ 46 (180)
T cd06423 1 IIVPAYN---EE-AVIERTIESLLALDYP--KLEVIVVDDGSTDDTLEILEE 46 (180)
T ss_pred CeecccC---hH-HHHHHHHHHHHhCCCC--ceEEEEEeCCCccchHHHHHH
Confidence 5799999 88 8999999999999996 679999999999987775554
No 43
>PRK10073 putative glycosyl transferase; Provisional
Probab=96.49 E-value=0.0049 Score=55.86 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 87 LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 87 lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
-|.|.|.||+|| ++ ..+.+++-|+++-.|+ .+.|.|.|||+++-|.+-+.+
T Consensus 5 ~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~ 55 (328)
T PRK10073 5 TPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH 55 (328)
T ss_pred CCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH
Confidence 588999999999 66 6899999999999998 689999999999877654443
No 44
>PRK10018 putative glycosyl transferase; Provisional
Probab=96.47 E-value=0.0057 Score=54.57 Aligned_cols=44 Identities=20% Similarity=0.432 Sum_probs=38.5
Q ss_pred CCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCc
Q 028216 86 ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 86 ~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~ 135 (212)
+.|.|-|.||||| ++.. +.+|+.|+++-+|| .+.+.|.|||++.
T Consensus 3 ~~p~VSVIip~yN---~~~~-l~~~l~Svl~Qt~~--~~EiIVVDDgS~~ 46 (279)
T PRK10018 3 DNPLISIYMPTWN---RQQL-AIRAIKSVLRQDYS--NWEMIIVDDCSTS 46 (279)
T ss_pred CCCEEEEEEEeCC---CHHH-HHHHHHHHHhCCCC--CeEEEEEECCCCC
Confidence 4688999999999 8754 57999999999998 5899999999983
No 45
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=96.47 E-value=0.0058 Score=51.83 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=37.1
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
...|.|.|.||+|| |...+ ..++-++.........+.|+|.|||.++-|.+.+.+
T Consensus 6 ~~~~~vsVvIp~yn---e~~~l-~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~ 60 (243)
T PLN02726 6 EGAMKYSIIVPTYN---ERLNI-ALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQ 60 (243)
T ss_pred CCCceEEEEEccCC---chhhH-HHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHH
Confidence 45789999999999 76433 344333322211122789999999999988765544
No 46
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.46 E-value=0.0053 Score=46.99 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=39.5
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||+|| | +..+.+|+.|+.+.+|| +..++|.|||+.+-+.+.+.+
T Consensus 1 vii~~~~---~-~~~l~~~l~sl~~~~~~--~~~iiivdd~s~~~~~~~~~~ 46 (166)
T cd04186 1 IIIVNYN---S-LEYLKACLDSLLAQTYP--DFEVIVVDNASTDGSVELLRE 46 (166)
T ss_pred CEEEecC---C-HHHHHHHHHHHHhccCC--CeEEEEEECCCCchHHHHHHH
Confidence 5799999 8 58899999999999985 679999999999877766554
No 47
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.38 E-value=0.004 Score=50.38 Aligned_cols=46 Identities=22% Similarity=0.067 Sum_probs=39.0
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|+||||| |+ ..+.+++.|+++..|| ...|+|.|||.++.|...+.+
T Consensus 1 viI~~~n---~~-~~l~~~l~sl~~q~~~--~~eiiivD~~s~d~t~~~~~~ 46 (202)
T cd04185 1 AVVVTYN---RL-DLLKECLDALLAQTRP--PDHIIVIDNASTDGTAEWLTS 46 (202)
T ss_pred CEEEeeC---CH-HHHHHHHHHHHhccCC--CceEEEEECCCCcchHHHHHH
Confidence 6899999 77 7789999999999999 458999999999877765444
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.32 E-value=0.0062 Score=49.60 Aligned_cols=48 Identities=21% Similarity=0.143 Sum_probs=40.0
Q ss_pred ccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 90 VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.||+|| |+. .+..++.|+++..|+ ...|+|.|||.++-|.+.+.+
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d~~~~~~~~ 48 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTDGTVAIARS 48 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCccHHHHHhc
Confidence 579999999 875 789999999999885 689999999999877665433
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=96.31 E-value=0.0075 Score=49.76 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=39.9
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||+|| +. ..+..++-|+++.+|| +...|.|.|||+++-|...+.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~i~~~ 47 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAEIIEK 47 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHHHHHH
Confidence 6799999 65 7999999999999998 4689999999999987754444
No 50
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=96.25 E-value=0.006 Score=49.96 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=38.1
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~ 142 (212)
|.||+|| |. ..+..|+-|+++.+ | ++.|+|.|||+++-|...+.
T Consensus 1 ViIp~~N---e~-~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 1 VLVPCLN---EE-AVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred CEEeccc---cH-HHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh
Confidence 6899999 87 78899999999988 5 68999999999998776544
No 51
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.18 E-value=0.011 Score=47.49 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=35.7
Q ss_pred EEEeCCCCCCCc-hHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhH
Q 028216 92 IFVTTADPYLEP-PILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (212)
Q Consensus 92 VFI~TydP~~EP-~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~ 139 (212)
|.||||| |. +..+..|+.|+++.+|| ...+.|.|||++.-+..
T Consensus 2 viip~~n---~~~~~~l~~~l~Sl~~q~~~--~~eiiivdd~ss~d~t~ 45 (201)
T cd04195 2 VLMSVYI---KEKPEFLREALESILKQTLP--PDEVVLVKDGPVTQSLN 45 (201)
T ss_pred EEEEccc---cchHHHHHHHHHHHHhcCCC--CcEEEEEECCCCchhHH
Confidence 7899999 64 67999999999999999 45889999998654333
No 52
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=96.12 E-value=0.011 Score=46.65 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=38.2
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||+|| |+ ..+.+|+-|+.+.+|+ ...|.|.|||+++-|...+.+
T Consensus 1 ivip~~n---~~-~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~t~~~~~~ 46 (182)
T cd06420 1 LIITTYN---RP-EALELVLKSVLNQSIL--PFEVIIADDGSTEETKELIEE 46 (182)
T ss_pred CEEeecC---Ch-HHHHHHHHHHHhccCC--CCEEEEEeCCCchhHHHHHHH
Confidence 5799999 87 5689999999999988 568999999999876654444
No 53
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=96.04 E-value=0.01 Score=51.94 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=43.0
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||||| |++..+.+|+-|+++-.+|.....|.|.|||+++-|...+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~ 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH
Confidence 7899999 988999999999999999866679999999999988776544
No 54
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.89 E-value=0.013 Score=46.18 Aligned_cols=48 Identities=23% Similarity=0.098 Sum_probs=40.5
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||+|| |+ ..+.+|+.|+....|+.....|+|.|||+++-|...+.+
T Consensus 1 iii~~~n---~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~ 48 (185)
T cd04179 1 VVIPAYN---EE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE 48 (185)
T ss_pred CeecccC---hH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH
Confidence 5799999 76 678899999999998666789999999999877665554
No 55
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=95.87 E-value=0.013 Score=52.78 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=41.0
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
..-|.|.|.||+|| |. ..+.+++.++.+..+......|.|.|||+++-|..-+.+
T Consensus 28 ~~~~~vSVVIPayN---ee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~ 82 (306)
T PRK13915 28 KAGRTVSVVLPALN---EE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAA 82 (306)
T ss_pred cCCCCEEEEEecCC---cH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHH
Confidence 45689999999999 87 456777777776544222458999999999988765443
No 56
>PRK10063 putative glycosyl transferase; Provisional
Probab=95.79 E-value=0.013 Score=51.01 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=40.7
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcC-CCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAV-DYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lal-DYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.|.|.||||| |. ..+..|+.|+.++ ..+...+.|.|.|||.++-|.+-+.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~ 53 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLEN 53 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHH
Confidence 56899999999 75 5688999888754 33334789999999999988775544
No 57
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=95.44 E-value=0.024 Score=46.24 Aligned_cols=46 Identities=17% Similarity=-0.007 Sum_probs=36.8
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~ 142 (212)
|.||+|| |+ ..+.+++-++.+..| ...+.|+|.|||+++-|...+.
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t~~~~~ 46 (224)
T cd06442 1 IIIPTYN---ER-ENIPELIERLDAALK-GIDYEIIVVDDNSPDGTAEIVR 46 (224)
T ss_pred CeEeccc---hh-hhHHHHHHHHHHhhc-CCCeEEEEEeCCCCCChHHHHH
Confidence 6799999 87 557889988888888 2368999999999987765433
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=95.12 E-value=0.025 Score=46.42 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=35.8
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCC--CCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDY--PAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDY--P~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||+|| |. ..+..++-++....+ +.....|+|.|||+++-|...+.+
T Consensus 1 iiip~yN---~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~ 50 (211)
T cd04188 1 VVIPAYN---EE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARK 50 (211)
T ss_pred CEEcccC---hH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHH
Confidence 5799999 76 556777777766544 445789999999999977655444
No 59
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.58 E-value=0.081 Score=38.66 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=39.9
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHH
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa 145 (212)
|.||++| |+ ..+..|+.+++..+|+ ...++++|||.++.+...+.+..
T Consensus 1 iii~~~~---~~-~~l~~~l~s~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~ 48 (156)
T cd00761 1 VIIPAYN---EE-PYLERCLESLLAQTYP--NFEVIVVDDGSTDGTLEILEEYA 48 (156)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCcc--ceEEEEEeCCCCccHHHHHHHHH
Confidence 5799999 65 7789999999999995 67899999999988777666544
No 60
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=94.42 E-value=0.075 Score=42.26 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=31.0
Q ss_pred EEEeCCCCCCCchHhHHH---HHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 92 IFVTTADPYLEPPILTVN---TVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~---TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
|.||||| |+ ..+.+ ++.+...-.++ .+.|+|.|||+++-|.+.+.+
T Consensus 1 viIp~~n---~~-~~l~~~l~sl~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~ 49 (181)
T cd04187 1 IVVPVYN---EE-ENLPELYERLKAVLESLGY--DYEIIFVDDGSTDRTLEILRE 49 (181)
T ss_pred CEEeecC---ch-hhHHHHHHHHHHHHHhcCC--CeEEEEEeCCCCccHHHHHHH
Confidence 6799999 76 44444 44443333344 689999999999977665444
No 61
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=94.05 E-value=0.076 Score=48.15 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=36.7
Q ss_pred CCCccEEEeCCCCCCCchHh--HHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHH
Q 028216 87 LPPLDIFVTTADPYLEPPIL--TVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (212)
Q Consensus 87 lP~VDVFI~TydP~~EP~~v--v~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa 145 (212)
.+.+.|.||+|| |...+ +...+.+++.- . .....|.|.|||.++-|.+.+.+.+
T Consensus 5 ~~~vSVVIP~yN---E~~~i~~~l~~l~~~~~~-~-~~~~EIIvVDDgS~D~T~~il~~~~ 60 (325)
T PRK10714 5 IKKVSVVIPVYN---EQESLPELIRRTTAACES-L-GKEYEILLIDDGSSDNSAEMLVEAA 60 (325)
T ss_pred CCeEEEEEcccC---chhhHHHHHHHHHHHHHh-C-CCCEEEEEEeCCCCCcHHHHHHHHH
Confidence 466999999999 76432 33334333321 1 1357899999999999988776644
No 62
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.18 E-value=2.5 Score=42.40 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCch------HHHHHHHHHHH---HHHHH-HHhhhhhcccccCC--CCccchhh
Q 028216 15 TTHRFLDVTILFLLLSLLFYRLLSLKHNGF------AWFVAFLCESC---FTFVW-VLITGTKWTPISYN--TYPQRLQE 82 (212)
Q Consensus 15 ~~~R~~~~~~l~~l~~yl~wR~~~tl~~~~------~wl~l~~aEl~---~~~~w-ll~~~~~w~Pv~R~--~~~drL~~ 82 (212)
++.|.+.+...++....-.|-...+++.+. .-+.+|+.-.+ .+|.- +.+.+....--+|. +.++..
T Consensus 62 ~lRR~~L~~~tla~tv~at~~m~~vl~~gG~~~le~~iL~Lfa~lFcwvs~~F~tAl~GF~~L~~~~~r~~~~~p~~p-- 139 (736)
T COG2943 62 TLRRYILLGLTLAQTVVATWYMKTVLPYGGPYMLEAGILVLFAVLFCWVSAGFWTALMGFLVLLFGRDRYLSIAPNEP-- 139 (736)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCcCCCCCCCC--
Confidence 357888887778887777888888888753 12222221111 11111 12222222111111 222110
Q ss_pred ccCCCCCccEEEeCCCCCCCchHhHH----HHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhc
Q 028216 83 RIKELPPLDIFVTTADPYLEPPILTV----NTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKY 158 (212)
Q Consensus 83 ~~~~lP~VDVFI~TydP~~EP~~vv~----~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~ 158 (212)
-.++-+--|..|||| |.+.-|- .|..| ++--=-.+++-+||+-|.+.+. -++.|...|++ +|++.
T Consensus 140 -~p~~hrTAilmPiyn---Ed~~rVfAgLrA~~eS-la~Tg~~~~FD~FVLSDs~dpd--ialAEq~a~~~----l~~e~ 208 (736)
T COG2943 140 -LPDLHRTAILMPIYN---EDVNRVFAGLRATYES-LAATGHAEHFDFFVLSDSRDPD--IALAEQKAWAE----LCREL 208 (736)
T ss_pred -CCcccceeEEeeccc---cCHHHHHHHHHHHHHH-HHhhCCcccceEEEEcCCCCch--hhhhHHHHHHH----HHHHh
Confidence 122334669999999 9876543 33333 3333345789999999988874 35667665554 99998
Q ss_pred CCcc
Q 028216 159 NIRV 162 (212)
Q Consensus 159 ~V~~ 162 (212)
|-+-
T Consensus 209 ~g~~ 212 (736)
T COG2943 209 GGEG 212 (736)
T ss_pred CCCC
Confidence 8543
No 63
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=92.94 E-value=0.17 Score=42.66 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=32.5
Q ss_pred ccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhH
Q 028216 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (212)
Q Consensus 90 VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~ 139 (212)
|.|.||||| |. ..+..++.|+... . + .|+|.|||+++-|.+
T Consensus 2 isvii~~~N---e~-~~l~~~l~sl~~~--~-~--eiivvD~gStD~t~~ 42 (229)
T cd02511 2 LSVVIITKN---EE-RNIERCLESVKWA--V-D--EIIVVDSGSTDRTVE 42 (229)
T ss_pred EEEEEEeCC---cH-HHHHHHHHHHhcc--c-C--EEEEEeCCCCccHHH
Confidence 679999999 76 4678888888654 1 2 799999999987754
No 64
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=89.03 E-value=0.69 Score=42.98 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=35.8
Q ss_pred cEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCch
Q 028216 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL 136 (212)
Q Consensus 91 DVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~ 136 (212)
=|.|.+|| - |+.+.+|+-|+++..+-.++..++|++||++..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~ 44 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE 44 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCchH
Confidence 37899999 5 589999999999987555789999999999864
No 65
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=86.19 E-value=1.1 Score=36.83 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=29.6
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCch
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL 136 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~ 136 (212)
+.||||| |....+.+|+.|+++- ...|.|.|||..+-
T Consensus 1 ~vI~~yn---~~~~~l~~~l~sl~~q-----~~~iivvDn~s~~~ 37 (237)
T cd02526 1 AVVVTYN---PDLSKLKELLAALAEQ-----VDKVVVVDNSSGND 37 (237)
T ss_pred CEEEEec---CCHHHHHHHHHHHhcc-----CCEEEEEeCCCCcc
Confidence 4699999 8889999999998875 24688888876553
No 66
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=82.63 E-value=2.9 Score=37.02 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=43.0
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEA 144 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Ea 144 (212)
|.+=+.|.||| +.+.+.+++-+..+.+||.+ .+.+.|+|.++.+.+.+.+.
T Consensus 3 ~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~ 53 (305)
T COG1216 3 PKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKAR 53 (305)
T ss_pred cceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhh
Confidence 66788999999 66889999999999999965 44489999999888877664
No 67
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=78.48 E-value=7 Score=36.30 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=38.5
Q ss_pred CccEEEeCCCCCCCch---HhHHHHHHHhhcCCCCC---CCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCc
Q 028216 89 PLDIFVTTADPYLEPP---ILTVNTVLSLLAVDYPA---HRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR 161 (212)
Q Consensus 89 ~VDVFI~TydP~~EP~---~vv~~TVls~lalDYP~---~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~ 161 (212)
...|.||.|| ||- .++-.|+-.. .=.|-. =...|-|+|||+.+.|.+... .||+|+|.+
T Consensus 68 ~lsVIVpayn---E~~ri~~mldeav~~l-e~ry~~~~~F~~eiiVvddgs~d~T~~~a~----------k~s~K~~~d 132 (323)
T KOG2977|consen 68 YLSVIVPAYN---EEGRIGAMLDEAVDYL-EKRYLSDKSFTYEIIVVDDGSTDSTVEVAL----------KFSRKLGDD 132 (323)
T ss_pred eeEEEEecCC---cccchHHHHHHHHHHH-HHHhccCCCCceeEEEeCCCCchhHHHHHH----------HHHHHcCcc
Confidence 6789999999 764 3344444332 222332 245689999999998776433 377888743
No 68
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=74.45 E-value=4.7 Score=39.81 Aligned_cols=43 Identities=21% Similarity=0.088 Sum_probs=36.4
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCC-CCceEEEcC
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPA-HRLACYVSD 130 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~-~Kl~vYv~D 130 (212)
..++.+=.+||+|+ |..+-+.+|+-|+...|||. .|+-+.|+|
T Consensus 22 ~~~~~~i~~v~cy~---E~~~~l~~tldsl~~~~y~~~~k~~~vi~D 65 (527)
T PF03142_consen 22 FPDKFVICLVPCYS---EGEEELRTTLDSLATTDYDDSRKLIFVICD 65 (527)
T ss_pred CCCceEEEEEcccc---CChHHHHHHHHHHHhcCCCCcccEEEEEcC
Confidence 34566778999999 99999999999999999998 566666776
No 69
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=72.46 E-value=32 Score=30.43 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=68.3
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCc-ccCccchh-
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR-VRAPFRYF- 169 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~-~r~P~~YF- 169 (212)
|+|||-. ..|-|+-.|+-+..+-.++.+.+.|.=..||.......-+ ..++..||+.++.. .+-.+.+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll------~g~~~~l~~~y~~~~i~~~~~~i~ 74 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL------DGGLQRLCQDYYLPKIRFDERHIH 74 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH------HHHHHHHHHhhcCCCccccccccE
Confidence 7899999 8889999999999998888887777767776665432222 11255699999763 33333333
Q ss_pred ---ccCCCCCCCCCChhhHHHHHHHHHHHHHHHccccccchhhcc
Q 028216 170 ---LRESDEPPCASSWEFQQDWEKMKSTRDFAETLKLQPTILLHL 211 (212)
Q Consensus 170 ---~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~~~~~~~~~ 211 (212)
...+....|-.++ .+-....+.-|+..++++..|..-+|+
T Consensus 75 vi~~~~g~~l~DI~t~--~d~~~~~~~I~~~i~~l~~~~~~~lh~ 117 (224)
T PF09623_consen 75 VIIDVNGLPLDDIRTE--EDNEAFADFIYRLIRELKQDPGRRLHV 117 (224)
T ss_pred EEecCCCccccccCCH--HHHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 2222222222222 223344455788888888887766664
No 70
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=63.81 E-value=7.7 Score=34.35 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=32.2
Q ss_pred ccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHh
Q 028216 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS 140 (212)
Q Consensus 90 VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~a 140 (212)
-.|.+|||| |-+.+-.-|=+=+-.++--..+..+.+.|||.-+=|.+.
T Consensus 5 YsvilPtYn---Ek~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~ 52 (238)
T KOG2978|consen 5 YSVILPTYN---EKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEV 52 (238)
T ss_pred eeEEecccc---CCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHH
Confidence 468999999 765554333333434433345778999999988877664
No 71
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.57 E-value=11 Score=36.79 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=42.1
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchh
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLN 137 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t 137 (212)
..++|.-.|.|+-.| |-...+.+||.|++.-.=+.=-..+.+.||+..+.+
T Consensus 120 ~~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe 170 (559)
T KOG3738|consen 120 KVDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE 170 (559)
T ss_pred ecCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH
Confidence 357999999999999 999999999999998754433345889999998764
No 72
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=53.34 E-value=22 Score=33.07 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred CccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCC
Q 028216 89 PLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNI 160 (212)
Q Consensus 89 ~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V 160 (212)
.||||+|.++ .- .++.-.=++-+.-+++-+ +++..|+.-+..-.+|.+ +|+++||
T Consensus 66 ~Idv~~P~~~---~~-------~l~~~r~~F~a~Gv~l~~---~~~~~~l~~~~dK~~~y~----~~~~~~i 120 (329)
T PF15632_consen 66 GIDVFVPGRN---RE-------LLAAHRDEFEALGVKLLT---ASSAETLELADDKAAFYE----FMEANGI 120 (329)
T ss_pred CCeEEEcCcc---HH-------HHHHHHHHHHHhCCEEEe---cCCHHHHHHHhhHHHHHH----HHHhCCC
Confidence 5999999998 22 133322223333455555 334555555555666666 8899998
No 73
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=51.45 E-value=14 Score=35.77 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCC-CCceEEEcCCCCCchh
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPA-HRLACYVSDDGCSPLN 137 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~-~Kl~vYv~DDG~s~~t 137 (212)
...|.+-|.|-+|| -| ..+.+|+-+++... |. ++..++||.||+...+
T Consensus 90 ~~~~~~pVlV~AcN---Rp-~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~ 138 (434)
T PF03071_consen 90 NKEPVIPVLVFACN---RP-DYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEV 138 (434)
T ss_dssp -------EEEEESS----T-T-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHH
T ss_pred cCCCcceEEEEecC---Cc-HHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHH
Confidence 45778889999999 54 88999999999988 64 7899999999987643
No 74
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=49.37 E-value=39 Score=29.59 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=25.3
Q ss_pred EEEeCCCCCCCchHhHHHH---HHHhhcCCCCCCCceEEEcCCCCCchh
Q 028216 92 IFVTTADPYLEPPILTVNT---VLSLLAVDYPAHRLACYVSDDGCSPLN 137 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~T---Vls~lalDYP~~Kl~vYv~DDG~s~~t 137 (212)
|.||..+-.. ...++.+- +.++... =+...+.|.|.|||.+..+
T Consensus 2 iIIPv~~~~~-~~~i~~~l~~~l~~l~~~-~~~~~~eiIvvd~~s~~~~ 48 (281)
T PF10111_consen 2 IIIPVRNRSE-RPDILERLRNCLESLSQF-QSDPDFEIIVVDDGSSDEF 48 (281)
T ss_pred EEEEecCCcc-chHHHHHHHHHHHHHHhc-CCCCCEEEEEEECCCchhH
Confidence 6789988222 22232222 3333221 1235799999999998743
No 75
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=47.17 E-value=11 Score=18.88 Aligned_cols=9 Identities=44% Similarity=0.682 Sum_probs=7.1
Q ss_pred EEcCCCCCc
Q 028216 127 YVSDDGCSP 135 (212)
Q Consensus 127 Yv~DDG~s~ 135 (212)
|.|+|||..
T Consensus 1 ~~S~D~G~T 9 (12)
T PF02012_consen 1 YYSTDGGKT 9 (12)
T ss_dssp EEESSTTSS
T ss_pred CEeCCCccc
Confidence 689999863
No 76
>PRK11039 putative dehydrogenase; Provisional
Probab=46.12 E-value=26 Score=28.90 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHhcCCc
Q 028216 141 LVEASKFAKLWVPFCKKYNIR 161 (212)
Q Consensus 141 l~Eaa~Fa~~wvpfC~k~~V~ 161 (212)
-.....|-..|+-||-++|..
T Consensus 115 K~Q~N~FL~eWL~~CL~~G~~ 135 (140)
T PRK11039 115 KHQINQFLADWLRYCLAHGAM 135 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 355778999999999999955
No 77
>PF06853 DUF1249: Protein of unknown function (DUF1249); InterPro: IPR009659 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=45.58 E-value=31 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.460 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhHHHHHhcCCc
Q 028216 140 SLVEASKFAKLWVPFCKKYNIR 161 (212)
Q Consensus 140 al~Eaa~Fa~~wvpfC~k~~V~ 161 (212)
.-.....|-..|+-||-++|-.
T Consensus 96 eK~q~N~FL~eWL~~CL~~G~~ 117 (120)
T PF06853_consen 96 EKWQLNRFLAEWLRYCLRHGHS 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHcCCc
Confidence 3445778888999999999954
No 78
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=42.70 E-value=17 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=29.0
Q ss_pred eEEEcCCCCCchhhHh----HHHHHHHHHHhHHHHHhcCCcccC
Q 028216 125 ACYVSDDGCSPLNFYS----LVEASKFAKLWVPFCKKYNIRVRA 164 (212)
Q Consensus 125 ~vYv~DDG~s~~t~~a----l~Eaa~Fa~~wvpfC~k~~V~~r~ 164 (212)
++.|+|||.+...+.. +....+.-+.+.-.+.+|||+-..
T Consensus 21 ~~~ltDdG~Tl~~L~~~G~~~~~s~~R~~~l~~il~~~gv~~~~ 64 (90)
T PF08861_consen 21 SIRLTDDGYTLMNLSSSGIDIDRSKKRKKILNSILNGFGVELDE 64 (90)
T ss_pred eEEEecCHHHHHhHhHcCCccccchHHHHHHHHHHHHcCccccC
Confidence 6789999998877764 221344445677899999998766
No 79
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=39.60 E-value=35 Score=29.30 Aligned_cols=32 Identities=16% Similarity=-0.045 Sum_probs=24.0
Q ss_pred CCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCc
Q 028216 96 TADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 96 TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~ 135 (212)
|||| +.+.+.+++.|++.-. ..|+|.|||.++
T Consensus 2 tyn~---~~~~l~~~l~sl~~q~-----~~iiVVDN~S~~ 33 (281)
T TIGR01556 2 TFNP---DLEHLGELITSLPKQV-----DRIIAVDNSPHS 33 (281)
T ss_pred ccCc---cHHHHHHHHHHHHhcC-----CEEEEEECcCCC
Confidence 8994 3568888888877642 379999999653
No 80
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=39.44 E-value=85 Score=28.93 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=38.7
Q ss_pred EeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCch--------hhHhHHHHHHHHH
Q 028216 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL--------NFYSLVEASKFAK 149 (212)
Q Consensus 94 I~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~--------t~~al~Eaa~Fa~ 149 (212)
|.+-+|..|.++.+.+-|..+..+= |.+ ++||+-|-|-.. ++.+|.++++.++
T Consensus 275 vd~k~~~lE~~e~I~~rI~~a~~~v-~~~--~l~lspdCGf~~l~~~~a~~KL~~l~~~a~~~~ 335 (339)
T PRK09121 275 IDVASDTIETPEEVADTLRKALQFV-DAD--KLYPCTNCGMAPLSRDVARGKLNALSAGAEIVR 335 (339)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhC-CHH--HEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998876643 445 899999988542 2234556555444
No 81
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.82 E-value=33 Score=33.61 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=36.4
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCC
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCS 134 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s 134 (212)
+++||++.|.|--.| |--..+++||-|++--.=|.=--.|.+.||=..
T Consensus 151 pe~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfSd 198 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSD 198 (603)
T ss_pred cccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCCc
Confidence 578999999999999 999999999999876554422223555566443
No 82
>PF04741 InvH: InvH outer membrane lipoprotein; InterPro: IPR006830 This family represents the Salmonella outer membrane lipoprotein InvH. The molecular function of this protein is unknown, but it is required for the localisation to outer membrane of InvG, which is involved in a type III secretion apparatus mediating host cell invasion [, ].; GO: 0009405 pathogenesis
Probab=38.43 E-value=12 Score=30.74 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=48.2
Q ss_pred HHHHHhhcCCCCCC------CceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCcccCccchhccCCCCCCCCCCh
Q 028216 109 NTVLSLLAVDYPAH------RLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSW 182 (212)
Q Consensus 109 ~TVls~lalDYP~~------Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~r~P~~YF~~~~~~~~~~~~~ 182 (212)
++|--||.+-|-.. .++--.+|...| +.+.+.. + -||.||.=..---..||+.. |
T Consensus 43 ~sid~c~slpyvps~l~~nktlsn~~s~ns~S--knntIsS-s-------~fcEky~q~~~qA~tFFqEH---------P 103 (147)
T PF04741_consen 43 DSIDECMSLPYVPSDLAKNKTLSNQNSDNSAS--KNNTISS-S-------IFCEKYKQTKEQAFTFFQEH---------P 103 (147)
T ss_pred ccHHHHHcCCCCchHHhhcccccccccccccc--cccchhh-H-------HHHHHHHHHHHHHHHHHHHC---------h
Confidence 44555777766432 233344555333 2333333 2 26777764444456788754 5
Q ss_pred hhHHHHHHHHHHHHHHHccccccc
Q 028216 183 EFQQDWEKMKSTRDFAETLKLQPT 206 (212)
Q Consensus 183 ~f~~e~~~~k~~Yee~k~~~~~~~ 206 (212)
+++++.+.=+..|-|||++-.+|.
T Consensus 104 eYm~s~e~EeqL~~EF~~Vl~~p~ 127 (147)
T PF04741_consen 104 EYMRSKEDEEQLMAEFKQVLLEPG 127 (147)
T ss_pred HHHhhhHHHHHHHHHHHHHHcccc
Confidence 678888888889999999887774
No 83
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=37.55 E-value=17 Score=32.27 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=29.0
Q ss_pred CCCchhhHhHHHHHHHHHHhHHHHHhcCCcccCccchhcc
Q 028216 132 GCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLR 171 (212)
Q Consensus 132 G~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~r~P~~YF~~ 171 (212)
|.++++.+++...-.-=+..||+|+|-.|..+-|..+|-.
T Consensus 77 gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA 116 (227)
T KOG3177|consen 77 GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKA 116 (227)
T ss_pred CCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCcee
Confidence 5567777765443333456999999999999999766644
No 84
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=35.06 E-value=18 Score=32.80 Aligned_cols=40 Identities=40% Similarity=0.500 Sum_probs=30.7
Q ss_pred CCCCCchhhHh-HHHHHHHHHHhHHHHHhcCCcccCccchhccC
Q 028216 130 DDGCSPLNFYS-LVEASKFAKLWVPFCKKYNIRVRAPFRYFLRE 172 (212)
Q Consensus 130 DDG~s~~t~~a-l~Eaa~Fa~~wvpfC~k~~V~~r~P~~YF~~~ 172 (212)
||=.|.+-||. -.+|..-|. +.|+++||...=|.-||...
T Consensus 73 dD~~RE~aFy~qAl~av~~a~---~~L~~~gip~~RP~DYfAEM 113 (271)
T PF05890_consen 73 DDLKRELAFYKQALEAVKEAR---PRLKKLGIPFKRPDDYFAEM 113 (271)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHHcCCCccCCCcchHHH
Confidence 78778888875 344444444 78999999999999999863
No 85
>COG3151 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.09 E-value=71 Score=26.62 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=35.9
Q ss_pred CCCCCccEEEeCCCCCCCchHhHHHHHHHhh-------cCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHh
Q 028216 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLL-------AVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKK 157 (212)
Q Consensus 85 ~~lP~VDVFI~TydP~~EP~~vv~~TVls~l-------alDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k 157 (212)
+.||.-...|--|- +...--|-|+. .+|||..|++. .+.-..-..|-..|+-||-+
T Consensus 74 s~~p~Psm~VRlYh------DA~~aEv~~s~q~rR~qa~y~ypn~~~hq-----------~dek~q~N~FLgdWL~ycla 136 (147)
T COG3151 74 SYWPLPSMTVRLYH------DAMVAEVCSSQQIRRFQARYDYPNKKLHQ-----------RDEKHQINQFLGDWLRYCLA 136 (147)
T ss_pred CCCCCCceEeeeeh------hhHHHHHHHHHHHhhHHhhcCCCCccccC-----------ccHHHHHHHHHHHHHHHHHH
Confidence 34555555666665 23333344443 25999765432 12233456788899999999
Q ss_pred cCCc
Q 028216 158 YNIR 161 (212)
Q Consensus 158 ~~V~ 161 (212)
||..
T Consensus 137 ~G~~ 140 (147)
T COG3151 137 HGHM 140 (147)
T ss_pred cCCc
Confidence 9964
No 86
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=29.42 E-value=51 Score=25.97 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=12.1
Q ss_pred CCCCCCceEEEcCCCCCc
Q 028216 118 DYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 118 DYP~~Kl~vYv~DDG~s~ 135 (212)
-|+ -+||.||||+..
T Consensus 30 G~~---AsCYtC~dG~~~ 44 (105)
T PF08844_consen 30 GYL---ASCYTCGDGRDM 44 (105)
T ss_pred Cce---eEEEecCCCCCC
Confidence 677 589999999864
No 87
>COG3095 MukE Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.99 E-value=32 Score=30.11 Aligned_cols=27 Identities=30% Similarity=0.648 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHhcCCc-ccCccchhccC
Q 028216 146 KFAKLWVPFCKKYNIR-VRAPFRYFLRE 172 (212)
Q Consensus 146 ~Fa~~wvpfC~k~~V~-~r~P~~YF~~~ 172 (212)
.|....--|-++|+|+ .||||.||-..
T Consensus 47 dfq~~l~~fy~rynvelirapegffylr 74 (238)
T COG3095 47 DFQEYLEEFYARYNVELIRAPEGFFYLR 74 (238)
T ss_pred hhHHHHHHHHHHhhhhheecCCceeEec
Confidence 4666777899999999 99999998643
No 88
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=28.94 E-value=38 Score=23.56 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=17.3
Q ss_pred hhcCCCCCCCceEEEcCCCC
Q 028216 114 LLAVDYPAHRLACYVSDDGC 133 (212)
Q Consensus 114 ~lalDYP~~Kl~vYv~DDG~ 133 (212)
+.-|||=.++|+|.+=|||.
T Consensus 34 ~vTmDyr~dRLnv~~D~~g~ 53 (60)
T PF11720_consen 34 AVTMDYRPDRLNVEVDDDGV 53 (60)
T ss_pred cCcccCCCCcEEEEECCCCc
Confidence 67789999999999988863
No 89
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=28.33 E-value=73 Score=21.47 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHhHHHHHhcCCcccC
Q 028216 139 YSLVEASKFAKLWVPFCKKYNIRVRA 164 (212)
Q Consensus 139 ~al~Eaa~Fa~~wvpfC~k~~V~~r~ 164 (212)
.++.|..+.++.=..|=++|||.|++
T Consensus 12 ~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 12 KAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 46888888888777999999999876
No 90
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=27.87 E-value=1e+02 Score=28.25 Aligned_cols=53 Identities=11% Similarity=0.288 Sum_probs=34.2
Q ss_pred cCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHHHHHHHHHHHcccc
Q 028216 129 SDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKSTRDFAETLKL 203 (212)
Q Consensus 129 ~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Yee~k~~~~ 203 (212)
|+-|.+. ...+.+|++|+= ..+|.+|- -.| +|| . .+||+++++.|-+|++|+.
T Consensus 220 caTGash--~~di~~A~RF~i---EvAK~fg~-g~c--~Fy-------d-------e~E~~~l~~lYG~m~~lqt 272 (276)
T PF06675_consen 220 CATGASH--EVDIEHAVRFCI---EVAKEFGR-GKC--SFY-------D-------EEEFARLQKLYGSMSHLQT 272 (276)
T ss_pred cccccCC--HHHHHHHHHHHH---HHHHHHcC-CCc--eee-------C-------HHHHHHHHHHhccHHHHHh
Confidence 5666665 345777888764 34555541 000 112 1 5799999999999999875
No 91
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=27.67 E-value=1.1e+02 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=28.2
Q ss_pred cEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHh
Q 028216 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS 140 (212)
Q Consensus 91 DVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~a 140 (212)
.||+...|..-.+ .+..++.|++.-. ..++++||.+||=+......
T Consensus 2 ni~~~~~~~~y~~--~~~v~l~Sll~nn--~~~~~fyil~~~is~e~~~~ 47 (248)
T cd06432 2 NIFSVASGHLYER--FLRIMMLSVMKNT--KSPVKFWFIKNFLSPQFKEF 47 (248)
T ss_pred eEEEEcCcHHHHH--HHHHHHHHHHHcC--CCCEEEEEEeCCCCHHHHHH
Confidence 4666655422222 3556666665543 36799999999988744433
No 92
>PRK05256 condesin subunit E; Provisional
Probab=26.99 E-value=1.2e+02 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=21.6
Q ss_pred HHHHhHHHHHhcCCc-ccCccchhccC
Q 028216 147 FAKLWVPFCKKYNIR-VRAPFRYFLRE 172 (212)
Q Consensus 147 Fa~~wvpfC~k~~V~-~r~P~~YF~~~ 172 (212)
|...+-.|-+|+|++ .||||.||=.-
T Consensus 50 ~q~~L~~FY~ry~~eLi~aPEgffYLr 76 (238)
T PRK05256 50 FQEELEEFYRRYNVELIRAPEGFFYLR 76 (238)
T ss_pred HHHHHHHHHHHhceeEEEcCCceEEec
Confidence 445777899999999 99999988653
No 93
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=26.97 E-value=1.2e+02 Score=27.32 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=29.6
Q ss_pred EeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCc
Q 028216 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 94 I~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~ 135 (212)
|+|-+|..|.++.+...|..+..+ -|.+ +++++.|-|-.
T Consensus 266 v~~~~~~vE~~e~v~~ri~~a~~~-~~~~--~l~~sPdCGfa 304 (324)
T PF01717_consen 266 VDTKSPEVESPEEVADRIEEALEY-VPLE--QLWLSPDCGFA 304 (324)
T ss_dssp S-TTSSS--THHHHHHHHHHHHTT-S-GG--GEEEEESSTST
T ss_pred EcCCCCCcCCHHHHHHHHHHHHhc-Cccc--cEEEcCCCCCC
Confidence 899999999999999999988877 5545 67999997754
No 94
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=26.42 E-value=47 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=25.6
Q ss_pred EEEcCCCCCchhhH--hHHHHHHHH-HHhHHHHHhcCCcccCccc
Q 028216 126 CYVSDDGCSPLNFY--SLVEASKFA-KLWVPFCKKYNIRVRAPFR 167 (212)
Q Consensus 126 vYv~DDG~s~~t~~--al~Eaa~Fa-~~wvpfC~k~~V~~r~P~~ 167 (212)
+..+-||.+...=. .+..+-+-. +..+.+|++-|++||.|.+
T Consensus 26 ~~g~~~~~~f~~~sv~~lk~~~~~s~~~yle~C~~~g~EP~k~~S 70 (111)
T COG4226 26 FVGLSGVIDFQGDSVKGLKKEGELSLDDYLEFCKERGIEPRKPYS 70 (111)
T ss_pred ccccccccCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCCccccC
Confidence 44556666654221 133322222 2578999999999999964
No 95
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=30 Score=27.05 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCcccCccchhcc
Q 028216 122 HRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLR 171 (212)
Q Consensus 122 ~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~r~P~~YF~~ 171 (212)
+|++.=|+||+++.+-|. +...-.|.|..-.||++-|-+--+=---|..
T Consensus 23 ~hinLkvv~qd~telfFk-iKktT~f~klm~af~~rqGK~m~slRfL~dG 71 (103)
T COG5227 23 KHINLKVVDQDGTELFFK-IKKTTTFKKLMDAFSRRQGKNMSSLRFLFDG 71 (103)
T ss_pred cccceEEecCCCCEEEEE-EeccchHHHHHHHHHHHhCcCcceeEEEEcc
Confidence 689999999999987554 4455578888889999999665544444544
No 96
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=26.05 E-value=1.2e+02 Score=21.06 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=17.8
Q ss_pred HHHHHHHHH----HhHHHHHhcCCcccCccc
Q 028216 141 LVEASKFAK----LWVPFCKKYNIRVRAPFR 167 (212)
Q Consensus 141 l~Eaa~Fa~----~wvpfC~k~~V~~r~P~~ 167 (212)
+.|||+--. ...--||++|| +|-|-+
T Consensus 18 ~~eAA~~Lgv~~T~LKr~CR~~GI-~RWP~R 47 (52)
T PF02042_consen 18 IKEAAKELGVSVTTLKRRCRRLGI-PRWPYR 47 (52)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-CCCCch
Confidence 566665322 46789999997 777754
No 97
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=25.86 E-value=1.6e+02 Score=30.47 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCch--------hhHhHHHHHHHHH
Q 028216 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL--------NFYSLVEASKFAK 149 (212)
Q Consensus 88 P~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~--------t~~al~Eaa~Fa~ 149 (212)
|+| |.+.+|..|.++.+.+.|..++.+= |.+ ++||+-|-|-.. ++.+|.+|++..+
T Consensus 696 lGV---iD~~s~~ves~Eei~~rI~~a~~~v-~~e--~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~r 759 (766)
T PLN02475 696 PGV---YDIHSPRIPSTEEIADRINKMLAVL-ESN--ILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLR 759 (766)
T ss_pred EEE---EcCCCCCCCCHHHHHHHHHHHHHhC-Ccc--eEEEcCCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 555 8889999999999999998877654 656 899999977432 4456888887666
No 98
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=25.81 E-value=24 Score=36.02 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=33.7
Q ss_pred EeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCc
Q 028216 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 94 I~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~ 135 (212)
..++. |+..++.+..-++.-.|||.+|+.=.|+.||...
T Consensus 323 ~~~~p---e~aIlVarel~aa~L~e~Pr~rL~GvVl~dGaan 361 (756)
T COG3605 323 ANAWP---EDAILVARELGAAELLEYPRDRLRGVVLEDGAAN 361 (756)
T ss_pred hhcCC---cceEEEecccCHHHHhhCchhhheeeeeecCccc
Confidence 34555 8888888888889999999999999999999875
No 99
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=25.81 E-value=2.8e+02 Score=24.50 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=45.8
Q ss_pred EEEeCCCCCCCchHhHHHHHHHhhcCCCC--CCCceEEEcCCCCCchhhHhHHHH-HHHHHHhHHHHHhcCCcccC
Q 028216 92 IFVTTADPYLEPPILTVNTVLSLLAVDYP--AHRLACYVSDDGCSPLNFYSLVEA-SKFAKLWVPFCKKYNIRVRA 164 (212)
Q Consensus 92 VFI~TydP~~EP~~vv~~TVls~lalDYP--~~Kl~vYv~DDG~s~~t~~al~Ea-a~Fa~~wvpfC~k~~V~~r~ 164 (212)
|+|||-. -.|-|+-.|+-+..+-..| .+.+.|.=.-+|...+ ..+|..- ..-..+|.-||+++.-.++.
T Consensus 1 ILvat~G---~sPQVVTETLyaL~~~g~~~~pdEi~vItT~~g~~~~-~~~Ll~~~~~~~g~~~~l~~dy~~~~~~ 72 (209)
T TIGR02584 1 ILLCVSG---MSPQIITETIYALAQESPPVVPEEIHVITTSDGKRDI-QQQLLTPDEAWQGVLAKLRHDYFQGPRP 72 (209)
T ss_pred CEEEecC---CCCchHHHHHHHHHhcCCCCCCCeEEEEEccCcHHHH-HHHhccCccchhhHHHHHHHHHhccCcc
Confidence 5788888 7789999999998888888 7877777777765443 3333210 00123667799999423444
No 100
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=25.49 E-value=60 Score=22.04 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=8.5
Q ss_pred HhH-HHHHhcCCcc
Q 028216 150 LWV-PFCKKYNIRV 162 (212)
Q Consensus 150 ~wv-pfC~k~~V~~ 162 (212)
.|+ -|+++|++..
T Consensus 51 ~Wl~rF~~Rh~~~~ 64 (66)
T smart00674 51 GWLTRFKKRHNIVK 64 (66)
T ss_pred HHHHHHHHHcCCcc
Confidence 466 6777777643
No 101
>cd08802 Death_UNC5B Death domain found in Uncoordinated-5B. Death Domain (DD) found in Uncoordinated-5B (UNC5B). UNC5B is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5B signaling is involved in the netrin-1-induced proliferation and migration of renal proximal tubular cells. It is also required for vascular patterning during embryonic development, and its activation inhibits sprouting angiogenesis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activatio
Probab=24.26 E-value=1.1e+02 Score=23.23 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=35.5
Q ss_pred HhHHHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHHH-------HHHHHHHHHccccccch
Q 028216 150 LWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEK-------MKSTRDFAETLKLQPTI 207 (212)
Q Consensus 150 ~wvpfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~-------~k~~Yee~k~~~~~~~~ 207 (212)
.|.-+++|+|+.. --.||..+.+ ......+.|+. +.+.=+-+++.+|+-.+
T Consensus 22 DW~~LAekL~ld~--yl~~f~~~ps-----PT~~LLd~WE~~~~~~~~v~~L~~~L~~mgR~D~~ 79 (84)
T cd08802 22 DWRLLAQKLSMDR--YLNYFATKAS-----PTGVILDLWEARHQDDGDLNSLASALEEMGKSEML 79 (84)
T ss_pred cHHHHHHHcCchh--HHHHHHcCCC-----cHHHHHHHHHhcCCCcccHHHHHHHHHHcCcchHH
Confidence 5999999999982 1339987654 22455677776 77777777777776443
No 102
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=23.75 E-value=2.3e+02 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=25.0
Q ss_pred eEEEcCCCCCchhhH------hHHHHHHHHHHhHHHHHhcC
Q 028216 125 ACYVSDDGCSPLNFY------SLVEASKFAKLWVPFCKKYN 159 (212)
Q Consensus 125 ~vYv~DDG~s~~t~~------al~Eaa~Fa~~wvpfC~k~~ 159 (212)
-++++|+.||+...+ .+..|.+.++...+.|.+++
T Consensus 5 vv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D 45 (199)
T cd01457 5 YTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYD 45 (199)
T ss_pred EEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 468899999987443 35666667777778887774
No 103
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.52 E-value=36 Score=34.19 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=40.4
Q ss_pred cCCCCCccEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchh
Q 028216 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLN 137 (212)
Q Consensus 84 ~~~lP~VDVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t 137 (212)
.+.+|++-|.|+-+| |-..++.+||-|...--=+.---.+.|.||+.....
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~ 188 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDH 188 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcchhh
Confidence 356999999999999 999999999998777654443445778888776554
No 104
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=22.48 E-value=1.7e+02 Score=20.87 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=20.3
Q ss_pred HhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhH
Q 028216 105 ILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (212)
Q Consensus 105 ~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~ 139 (212)
..+...+.--+++.+- ++||.|||+++-|..
T Consensus 5 ~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~ 35 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVD----HIYIYDDGSTDGTRE 35 (97)
T ss_pred HHHHHHHHHHHHcCCC----EEEEEECCCCccHHH
Confidence 3455555555555543 689999999986644
No 105
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.89 E-value=78 Score=17.87 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHcccccc
Q 028216 187 DWEKMKSTRDFAETLKLQP 205 (212)
Q Consensus 187 e~~~~k~~Yee~k~~~~~~ 205 (212)
+++...+.+++|++.+.+|
T Consensus 16 ~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 16 DPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 4555677889999988776
No 106
>cd08781 Death_UNC5-like Death domain found in Uncoordinated-5 homolog family. Death Domain (DD) found in Uncoordinated-5 (UNC-5) homolog family, which includes Unc5A, B, C and D in vertebrates. UNC5 proteins are receptors for secreted netrins (netrin-1, -3 and -4) that are involved in diverse processes like axonal guidance, neuronal migration, blood vessel patterning, and apoptosis. They are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit
Probab=21.72 E-value=1.1e+02 Score=22.55 Aligned_cols=49 Identities=16% Similarity=0.315 Sum_probs=35.6
Q ss_pred HhHHHHHhcCCcccCccchhccCCCCCCCCCChhhHHHHH-------HHHHHHHHHHcccccc
Q 028216 150 LWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWE-------KMKSTRDFAETLKLQP 205 (212)
Q Consensus 150 ~wvpfC~k~~V~~r~P~~YF~~~~~~~~~~~~~~f~~e~~-------~~k~~Yee~k~~~~~~ 205 (212)
.|.-++.|+|+.. =-.||....+ ....+.++|+ .+.+.++-|++++|.-
T Consensus 22 dWr~LA~~Lgl~~--~i~~~~~~~S-----PT~~LL~~We~~~~~~~tv~~L~~~L~~mgr~d 77 (83)
T cd08781 22 DWRLLAKKLSVDR--YLNYFATKPS-----PTGVILDLWEARHRDDGALNDLAQILEEMGRTD 77 (83)
T ss_pred CHHHHHHHhCcHH--HHHHHcCCCC-----hHHHHHHHHHhcCCCcchHHHHHHHHHHcCcHH
Confidence 5999999999762 2677765432 2356788885 5788888888888754
No 107
>PF13041 PPR_2: PPR repeat family
Probab=21.31 E-value=81 Score=20.07 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHccccccchh
Q 028216 187 DWEKMKSTRDFAETLKLQPTIL 208 (212)
Q Consensus 187 e~~~~k~~Yee~k~~~~~~~~~ 208 (212)
+.+...+.|++|++.+.+|...
T Consensus 18 ~~~~a~~l~~~M~~~g~~P~~~ 39 (50)
T PF13041_consen 18 KFEEALKLFKEMKKRGIKPDSY 39 (50)
T ss_pred CHHHHHHHHHHHHHcCCCCCHH
Confidence 4566678999999999999754
No 108
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=21.26 E-value=1.4e+02 Score=25.38 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=27.1
Q ss_pred cEEEeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH
Q 028216 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (212)
Q Consensus 91 DVFI~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E 143 (212)
+|++++=+.+..+..++.++++.. -+.+.+.+|++.||-++.....|.+
T Consensus 2 ~I~~~~d~~y~~~~~~~l~Sl~~~----~~~~~~~~~il~~~is~~~~~~L~~ 50 (248)
T cd04194 2 NIVFAIDDNYAPYLAVTIKSILAN----NSKRDYDFYILNDDISEENKKKLKE 50 (248)
T ss_pred CEEEEecHhhHHHHHHHHHHHHhc----CCCCceEEEEEeCCCCHHHHHHHHH
Confidence 466666554444444444444432 2225688888888866655554444
No 109
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=21.00 E-value=1.8e+02 Score=27.17 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=30.6
Q ss_pred EeCCCCCCCchHhHHHHHHHhhcCCCCCCCceEEEcCCCCCc
Q 028216 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (212)
Q Consensus 94 I~TydP~~EP~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~ 135 (212)
|.+.+|..|+++.+++-|..+..+= |.+ +++++.|-|-.
T Consensus 302 vd~~~~~vE~~e~I~~rI~~a~~~v-~~~--~l~lspdCGf~ 340 (368)
T PRK06520 302 ITTKNGELENADDVKARLAEAAKFV-PLE--QLCLSPQCGFA 340 (368)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhC-CHH--HEeeCcccCCC
Confidence 7888899999999999887765543 545 68999998865
No 110
>PRK05852 acyl-CoA synthetase; Validated
Probab=20.90 E-value=2.4e+02 Score=26.34 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHH-HHHHHHHhHHHHHhcCCccc
Q 028216 107 TVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE-ASKFAKLWVPFCKKYNIRVR 163 (212)
Q Consensus 107 v~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~E-aa~Fa~~wvpfC~k~~V~~r 163 (212)
....++.-.+-.+| +++.+.. +|+...+|+..+.+ +.++|+.. ++.|+.+-
T Consensus 17 ~l~~~l~~~a~~~p-~~~ai~~-~~~~~~~Ty~~l~~~~~~~a~~L----~~~gv~~g 68 (534)
T PRK05852 17 RIADLVEVAATRLP-EAPALVV-TADRIAISYRDLARLVDDLAGQL----TRSGLLPG 68 (534)
T ss_pred cHHHHHHHHHHhCC-CCcEEEe-cCCCCcccHHHHHHHHHHHHHHH----HhcCCCCC
Confidence 33344444455677 5666654 45566899998777 55666533 56777554
No 111
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=20.89 E-value=56 Score=32.39 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=12.9
Q ss_pred CCCCceEEEcCCCCCc
Q 028216 120 PAHRLACYVSDDGCSP 135 (212)
Q Consensus 120 P~~Kl~vYv~DDG~s~ 135 (212)
|-|+-.|||+||||--
T Consensus 52 PyEHGEVfVLDDGgEv 67 (585)
T KOG2387|consen 52 PYEHGEVFVLDDGGEV 67 (585)
T ss_pred ccccceEEEecCCcee
Confidence 4567789999999864
No 112
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.83 E-value=6e+02 Score=22.60 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=20.9
Q ss_pred HHHHhhhhhcccccCCCCccchhhc------cCCCCCccEEEe
Q 028216 59 VWVLITGTKWTPISYNTYPQRLQER------IKELPPLDIFVT 95 (212)
Q Consensus 59 ~wll~~~~~w~Pv~R~~~~drL~~~------~~~lP~VDVFI~ 95 (212)
.|+.-.+.+.+|+.+...|+ +.+. ..++|..+|+|-
T Consensus 50 ~~i~~~~~~~~~l~~~~~p~-L~~~v~~la~~~g~~~p~v~v~ 91 (288)
T PRK03982 50 DKIVLASYNARIVSEEEAPE-LYRIVERLAERANIPKPKVAIV 91 (288)
T ss_pred HHHHHHhcCCEECChhhhHH-HHHHHHHHHHHcCCCCCeEEEE
Confidence 44444566788887665543 2221 355677788775
No 113
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=55 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=18.7
Q ss_pred cCCCCccchhhccCCCCCccEEEeCCC
Q 028216 72 SYNTYPQRLQERIKELPPLDIFVTTAD 98 (212)
Q Consensus 72 ~R~~~~drL~~~~~~lP~VDVFI~Tyd 98 (212)
+|.+++|.++ ..-+|.|||.|.|+.
T Consensus 149 kr~t~~d~~e--~~iLP~~Dvii~SaS 173 (250)
T COG2014 149 KRGTLSDTLE--YQILPEVDVIIASAS 173 (250)
T ss_pred ccccccchhh--hhhcccccEEEEech
Confidence 4566666554 467999999999986
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.22 E-value=97 Score=17.12 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHccccccc
Q 028216 187 DWEKMKSTRDFAETLKLQPT 206 (212)
Q Consensus 187 e~~~~k~~Yee~k~~~~~~~ 206 (212)
+++...+.|++|++.+..|.
T Consensus 15 ~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 15 RVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 45677788999999888875
No 115
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.20 E-value=1.1e+02 Score=27.31 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=33.3
Q ss_pred chHhHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHH----------------HHHHhHHHHHhcCCcc
Q 028216 103 PPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASK----------------FAKLWVPFCKKYNIRV 162 (212)
Q Consensus 103 P~~vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~----------------Fa~~wvpfC~k~~V~~ 162 (212)
|++.+.+ ++-.||. |=-+.|+.+++||.|-++......+..+ --+..+.+|+++||+.
T Consensus 16 ~~~~ik~-~id~ma~-~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~V 89 (351)
T PF00728_consen 16 SVDTIKR-LIDQMAY-YKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEV 89 (351)
T ss_dssp -HHHHHH-HHHHHHH-TT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHH-HHHHHHH-cCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCce
Confidence 3344444 4444554 5556899999999776665543222221 1235888999999974
No 116
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=20.04 E-value=97 Score=26.64 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=35.6
Q ss_pred hHHHHHHHhhcCCCCCCCceEEEcCCCCCchhhHhHHHHHHHHHHhHHHHHhcCCcc
Q 028216 106 LTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRV 162 (212)
Q Consensus 106 vv~~TVls~lalDYP~~Kl~vYv~DDG~s~~t~~al~Eaa~Fa~~wvpfC~k~~V~~ 162 (212)
....|+ +.-...|-.+.++|-|-|=||++ .|+..|--|||+.++..
T Consensus 48 dmiptv-Gfnmrk~tkgnvtiklwD~gGq~----------rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 48 DMIPTV-GFNMRKVTKGNVTIKLWDLGGQP----------RFRSMWERYCRGVSAIV 93 (186)
T ss_pred hhcccc-cceeEEeccCceEEEEEecCCCc----------cHHHHHHHHhhcCcEEE
Confidence 344444 34445677788999999999999 68999999999988653
Done!