BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028218
MLGKSVASPLLSASPCPSAPDISTTTPNNVPLNVNLSNGLPPNAIRVPWSSHVYLKKWAI
YSTAQVQSITLNDEERKKWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRET
PELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYL
RNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF

High Scoring Gene Products

Symbol, full name Information P value
AT4G09620 protein from Arabidopsis thaliana 2.3e-55

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028218
        (212 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2136902 - symbol:AT4G09620 "AT4G09620" species...   571  2.3e-55   1


>TAIR|locus:2136902 [details] [associations]
            symbol:AT4G09620 "AT4G09620" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] GO:GO:0009507 EMBL:CP002687 InterPro:IPR003690
            Pfam:PF02536 IPI:IPI00520647 RefSeq:NP_192700.2 UniGene:At.26367
            ProteinModelPortal:F4JK28 SMR:F4JK28 PRIDE:F4JK28
            EnsemblPlants:AT4G09620.1 GeneID:826547 KEGG:ath:AT4G09620
            OMA:GYNVDCK Uniprot:F4JK28
        Length = 212

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 101/157 (64%), Positives = 130/157 (82%)

Query:    57 KWAIY-STAQVQSITLNDEERKKWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEE 115
             KW ++ ST QV++   ++E+   WE C++ALS F+FS EE+DKILGKAFGHIHS YW+EE
Sbjct:    59 KWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYWTEE 115

Query:   116 RKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGI 175
             R +E P++ET+++IL +LR+L LSD+D+ K++KKFPEVLGC +E E++ N+ IL   WGI
Sbjct:   116 RVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQWGI 175

Query:   176 EGKYLRNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 212
              GK LRNLLLRNPKVLGYNVDCKGDC+AQCTRCWVRF
Sbjct:   176 TGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       177   0.00084  109 3  11 22  0.41    32
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.71u 0.08s 19.79t   Elapsed:  00:00:01
  Total cpu time:  19.71u 0.08s 19.79t   Elapsed:  00:00:01
  Start:  Fri May 10 08:07:01 2013   End:  Fri May 10 08:07:02 2013

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