Query 028218
Match_columns 212
No_of_seqs 136 out of 213
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 99.7 4.8E-17 1.7E-21 139.7 8.6 103 78-198 110-214 (270)
2 3m66_A Mterf3, mterf domain-co 99.6 2.1E-16 7.2E-21 135.7 8.1 108 77-197 39-146 (270)
3 3mva_O Transcription terminati 99.6 2.1E-15 7.1E-20 134.3 8.9 104 76-198 196-305 (343)
4 4fp9_B Mterf domain-containing 99.6 4.1E-15 1.4E-19 134.5 8.9 114 77-196 76-213 (335)
5 4fp9_B Mterf domain-containing 99.6 3.5E-15 1.2E-19 135.0 8.3 106 75-197 42-147 (335)
6 3mva_O Transcription terminati 99.5 6.1E-15 2.1E-19 131.3 7.2 107 78-197 50-157 (343)
7 3ff5_A PEX14P, peroxisomal bio 92.3 0.13 4.6E-06 35.4 3.7 24 126-149 30-53 (54)
8 4fzv_B Mterf domain-containing 92.2 0.12 4.1E-06 43.5 4.0 93 87-192 41-133 (239)
9 4ae4_A Ubiquitin-associated pr 90.1 1.6 5.4E-05 33.9 8.3 29 71-103 4-32 (118)
10 2w84_A Peroxisomal membrane pr 90.0 0.29 1E-05 35.4 3.7 25 126-150 35-59 (70)
11 2knz_A Ubiquilin-4; cytoplasm, 85.3 2.4 8.1E-05 28.2 5.8 44 77-139 9-53 (53)
12 1oqy_A HHR23A, UV excision rep 77.5 2 6.7E-05 39.1 4.1 43 124-176 166-208 (368)
13 1ixs_A Holliday junction DNA h 77.2 2.5 8.4E-05 29.2 3.7 44 124-167 15-59 (62)
14 2g3q_A Protein YBL047C; endocy 73.3 5.9 0.0002 24.8 4.4 24 80-103 5-28 (43)
15 1ify_A HHR23A, UV excision rep 73.1 5.1 0.00018 26.1 4.2 26 79-104 8-33 (49)
16 4fzv_B Mterf domain-containing 71.0 9.6 0.00033 31.9 6.4 97 82-196 71-168 (239)
17 2knz_A Ubiquilin-4; cytoplasm, 70.4 6 0.0002 26.2 4.1 43 121-171 6-49 (53)
18 1ixs_A Holliday junction DNA h 70.3 5 0.00017 27.6 3.9 25 79-103 17-41 (62)
19 1vg5_A RSGI RUH-014, rhomboid 68.8 5.9 0.0002 28.3 4.1 39 126-172 29-67 (73)
20 1ify_A HHR23A, UV excision rep 67.8 8.1 0.00028 25.1 4.3 38 126-171 8-45 (49)
21 2jy5_A Ubiquilin-1; UBA, alter 66.7 7.4 0.00025 25.7 4.0 28 77-104 10-38 (52)
22 1lkx_A Myosin IE heavy chain; 65.0 8.8 0.0003 37.7 5.8 75 73-150 240-323 (697)
23 2g3q_A Protein YBL047C; endocy 64.9 6.7 0.00023 24.5 3.3 36 128-171 6-41 (43)
24 2ycu_A Non muscle myosin 2C, a 64.7 12 0.00041 38.0 6.9 80 71-154 292-376 (995)
25 1veg_A NEDD8 ultimate buster-1 64.5 7.8 0.00027 28.5 4.1 39 128-174 31-69 (83)
26 2dak_A Ubiquitin carboxyl-term 63.4 8.5 0.00029 26.2 3.9 37 128-172 11-47 (63)
27 1z96_A DNA-damage, UBA-domain 63.3 13 0.00043 22.4 4.3 25 79-103 4-28 (40)
28 4ae4_A Ubiquitin-associated pr 63.1 33 0.0011 26.3 7.7 39 128-174 78-116 (118)
29 2ooa_A E3 ubiquitin-protein li 62.6 5.9 0.0002 27.0 2.9 27 123-149 8-34 (52)
30 3ff5_A PEX14P, peroxisomal bio 62.3 7.8 0.00027 26.5 3.5 33 149-186 21-53 (54)
31 1vg5_A RSGI RUH-014, rhomboid 62.1 4.1 0.00014 29.2 2.1 39 78-135 28-66 (73)
32 1z96_A DNA-damage, UBA-domain 62.0 9.8 0.00033 22.9 3.6 24 127-150 5-28 (40)
33 2lbc_A Ubiquitin carboxyl-term 61.8 11 0.00037 28.7 4.7 85 81-173 5-117 (126)
34 4db1_A Myosin-7; S1DC, cardiac 61.8 14 0.00047 36.9 6.5 77 73-153 323-404 (783)
35 2ztd_A Holliday junction ATP-d 61.6 20 0.00068 30.2 6.7 99 69-170 106-209 (212)
36 2jy5_A Ubiquilin-1; UBA, alter 61.6 8.1 0.00028 25.5 3.4 42 122-171 8-50 (52)
37 1wgn_A UBAP1, ubiquitin associ 61.1 4.1 0.00014 28.9 1.9 41 121-172 17-57 (63)
38 1wgn_A UBAP1, ubiquitin associ 60.1 7.5 0.00026 27.5 3.1 29 71-103 15-43 (63)
39 1wji_A Tudor domain containing 59.9 13 0.00044 25.6 4.3 25 80-104 10-34 (63)
40 3t72_q RNA polymerase sigma fa 59.7 21 0.00072 26.2 5.8 65 70-147 19-94 (99)
41 1kk8_A Myosin heavy chain, str 58.8 15 0.0005 36.9 6.2 77 73-153 322-403 (837)
42 2bwb_A Ubiquitin-like protein 56.7 8.5 0.00029 24.9 2.8 41 123-171 4-45 (46)
43 1oqy_A HHR23A, UV excision rep 56.7 3 0.0001 38.0 0.7 26 79-104 168-193 (368)
44 1w9i_A Myosin II heavy chain; 55.7 13 0.00044 37.0 5.1 78 73-154 318-399 (770)
45 1wiv_A UBP14, ubiquitin-specif 54.5 16 0.00054 25.8 4.2 37 128-172 31-67 (73)
46 1g8x_A Myosin II heavy chain f 54.4 17 0.0006 37.0 6.0 77 73-153 318-398 (1010)
47 3dfg_A Xcrecx, regulatory prot 54.4 42 0.0014 26.4 7.2 67 81-150 36-108 (162)
48 2bwb_A Ubiquitin-like protein 54.0 24 0.00083 22.7 4.7 28 77-104 5-33 (46)
49 1w7j_A Myosin VA; motor protei 53.4 16 0.00056 36.3 5.5 79 73-154 299-381 (795)
50 3idw_A Actin cytoskeleton-regu 51.8 52 0.0018 23.7 6.5 52 83-149 6-60 (72)
51 1wji_A Tudor domain containing 51.5 15 0.0005 25.3 3.5 37 128-172 11-47 (63)
52 1i84_S Smooth muscle myosin he 51.3 28 0.00095 35.7 6.9 79 73-154 325-407 (1184)
53 2d9s_A CBL E3 ubiquitin protei 50.1 14 0.00047 25.3 3.0 37 126-170 9-45 (53)
54 1vej_A Riken cDNA 4931431F19; 50.0 11 0.00037 27.1 2.7 40 77-135 27-67 (74)
55 2dna_A Unnamed protein product 49.1 14 0.00048 26.2 3.1 44 121-172 14-58 (67)
56 1wr1_B Ubiquitin-like protein 48.8 23 0.00079 24.1 4.1 40 77-135 15-55 (58)
57 2ooa_A E3 ubiquitin-protein li 47.5 36 0.0012 23.1 4.8 25 80-104 12-36 (52)
58 2dfs_A Myosin-5A; myosin-V, in 46.9 26 0.00089 36.0 5.9 75 73-149 299-377 (1080)
59 2pjp_A Selenocysteine-specific 46.5 42 0.0014 24.8 5.7 79 84-176 25-110 (121)
60 2dah_A Ubiquilin-3; UBA domain 46.2 9.6 0.00033 25.5 1.8 40 124-171 7-47 (54)
61 1vej_A Riken cDNA 4931431F19; 46.2 19 0.00064 25.8 3.4 43 121-171 24-67 (74)
62 2v26_A Myosin VI; calmodulin-b 45.7 29 0.00097 34.5 5.8 75 73-149 307-388 (784)
63 2dah_A Ubiquilin-3; UBA domain 45.6 18 0.00061 24.1 3.1 41 78-137 8-49 (54)
64 2dna_A Unnamed protein product 45.3 27 0.00094 24.6 4.2 42 77-137 17-59 (67)
65 1wr1_B Ubiquitin-like protein 45.2 12 0.00042 25.4 2.2 43 121-171 12-55 (58)
66 4asv_A Small glutamine-rich te 45.0 21 0.00073 26.9 3.7 42 63-104 31-74 (92)
67 1wiv_A UBP14, ubiquitin-specif 44.8 31 0.001 24.3 4.4 24 80-103 30-53 (73)
68 2ekk_A UBA domain from E3 ubiq 44.1 15 0.00051 23.4 2.4 35 128-171 11-45 (47)
69 2w84_A Peroxisomal membrane pr 44.0 20 0.0007 25.7 3.3 33 149-186 26-58 (70)
70 2dak_A Ubiquitin carboxyl-term 43.4 20 0.00069 24.2 3.1 24 80-103 10-33 (63)
71 2oo9_A E3 ubiquitin-protein li 42.6 26 0.00088 23.3 3.4 24 126-149 4-27 (46)
72 2vz4_A Tipal, HTH-type transcr 42.3 89 0.003 22.6 6.8 76 84-172 6-89 (108)
73 1veg_A NEDD8 ultimate buster-1 41.6 29 0.001 25.4 3.9 38 80-136 30-67 (83)
74 1r8d_A Transcription activator 41.2 95 0.0032 22.4 6.8 76 84-172 7-90 (109)
75 2cos_A Serine/threonine protei 40.0 20 0.00068 24.6 2.6 40 83-140 13-52 (54)
76 1cuk_A RUVA protein; DNA repai 39.8 25 0.00084 29.2 3.7 87 81-168 105-201 (203)
77 2ef8_A C.ECOT38IS, putative tr 39.7 77 0.0026 20.6 6.9 68 74-145 6-75 (84)
78 1ixr_A Holliday junction DNA h 39.1 21 0.00072 29.4 3.2 82 81-166 104-187 (191)
79 3e3v_A Regulatory protein RECX 38.6 1E+02 0.0034 24.5 7.1 99 84-186 40-162 (177)
80 2lxb_A Small glutamine-rich te 38.6 23 0.00077 25.6 2.9 42 63-104 19-62 (74)
81 1cuk_A RUVA protein; DNA repai 36.3 24 0.00082 29.3 3.1 27 77-103 158-184 (203)
82 3v6t_A DHAX3; tandem repeats, 36.1 94 0.0032 29.5 7.3 38 62-99 68-109 (499)
83 2dkl_A Trinucleotide repeat co 35.9 35 0.0012 24.8 3.6 40 80-138 22-61 (85)
84 2juj_A E3 ubiquitin-protein li 34.0 42 0.0014 23.1 3.5 25 125-149 6-30 (56)
85 4ham_A LMO2241 protein; struct 33.6 1.1E+02 0.0037 22.7 6.2 66 85-150 44-122 (134)
86 2cp8_A NEXT to BRCA1 gene 1 pr 33.4 42 0.0014 22.8 3.4 44 120-171 3-47 (54)
87 3oq9_A Tumor necrosis factor r 32.5 43 0.0015 24.4 3.6 29 126-154 12-40 (86)
88 2ztd_A Holliday junction ATP-d 32.0 34 0.0012 28.8 3.4 26 78-103 163-188 (212)
89 1q08_A Zn(II)-responsive regul 31.7 40 0.0014 23.7 3.3 22 128-149 7-28 (99)
90 2dag_A Ubiquitin carboxyl-term 31.6 37 0.0013 23.9 3.1 38 128-172 11-48 (74)
91 3v6t_A DHAX3; tandem repeats, 31.6 1.1E+02 0.0038 29.0 7.0 74 60-147 100-178 (499)
92 3ol3_A Putative uncharacterize 31.1 1.8E+02 0.006 22.2 7.1 54 70-139 43-101 (107)
93 2cwb_A Chimera of immunoglobul 31.1 61 0.0021 24.7 4.4 42 77-137 64-106 (108)
94 2v79_A DNA replication protein 30.9 33 0.0011 26.5 2.9 54 128-185 20-73 (135)
95 2e01_A Cysteine proteinase 1; 30.5 10 0.00035 35.5 -0.1 25 186-210 52-79 (457)
96 2dag_A Ubiquitin carboxyl-term 30.3 60 0.002 22.8 4.0 39 80-136 10-48 (74)
97 2m0n_A Putative uncharacterize 30.2 1.1E+02 0.0036 23.7 5.6 55 70-140 40-102 (112)
98 1whc_A RSGI RUH-027, UBA/UBX 3 29.5 44 0.0015 22.8 3.0 38 128-172 11-48 (64)
99 1dv0_A DNA repair protein HHR2 29.3 27 0.00092 22.5 1.8 24 80-103 5-28 (47)
100 1uxc_A FRUR (1-57), fructose r 29.3 54 0.0018 22.1 3.5 50 86-147 7-56 (65)
101 2cpw_A CBL-interacting protein 28.7 40 0.0014 23.0 2.8 37 128-171 21-57 (64)
102 2dai_A Ubadc1, ubiquitin assoc 28.4 69 0.0024 23.0 4.1 24 80-103 30-53 (83)
103 3ayh_A DNA-directed RNA polyme 28.3 42 0.0014 26.1 3.1 57 121-184 72-128 (136)
104 2cb5_A Protein (bleomycin hydr 28.2 25 0.00084 32.9 2.0 29 182-210 43-74 (453)
105 2y1q_A CLPC N-domain, negative 27.9 1.3E+02 0.0045 22.1 5.8 53 53-105 6-69 (150)
106 3e1s_A Exodeoxyribonuclease V, 27.6 20 0.00068 33.8 1.3 70 75-181 3-72 (574)
107 4anj_A Unconventional myosin-V 27.1 67 0.0023 33.1 5.1 76 73-149 311-392 (1052)
108 1q06_A Transcriptional regulat 27.1 1.6E+02 0.0055 22.2 6.2 63 84-149 5-69 (135)
109 1vek_A UBP14, ubiquitin-specif 26.8 70 0.0024 23.0 3.9 24 80-103 30-53 (84)
110 3gp4_A Transcriptional regulat 26.7 1.8E+02 0.0062 22.2 6.6 63 84-149 7-71 (142)
111 2c6a_A Ubiquitin-protein ligas 25.6 16 0.00055 24.3 0.2 8 203-210 28-35 (46)
112 3k9o_A Ubiquitin-conjugating e 25.1 2.7E+02 0.0092 22.4 9.4 40 123-170 160-199 (201)
113 2c35_A Human RPB4, DNA-directe 25.1 83 0.0028 24.9 4.4 57 121-184 85-141 (152)
114 2dkl_A Trinucleotide repeat co 24.7 82 0.0028 22.8 3.9 38 127-172 22-59 (85)
115 1wj7_A Hypothetical protein (R 24.7 65 0.0022 24.6 3.5 41 124-172 37-78 (104)
116 1vek_A UBP14, ubiquitin-specif 24.6 58 0.002 23.4 3.1 38 128-172 31-68 (84)
117 2dai_A Ubadc1, ubiquitin assoc 24.2 60 0.0021 23.4 3.1 37 128-172 31-67 (83)
118 2hh6_A BH3980 protein; 1017660 24.1 1E+02 0.0035 23.7 4.6 47 56-106 16-65 (113)
119 3gpv_A Transcriptional regulat 24.0 2.1E+02 0.0073 21.8 6.6 65 82-149 19-85 (148)
120 2oo9_A E3 ubiquitin-protein li 23.9 77 0.0026 21.0 3.3 26 78-103 3-28 (46)
121 2crn_A Ubash3A protein; compac 23.6 64 0.0022 22.0 3.0 37 129-172 12-48 (64)
122 3ezq_A Tumor necrosis factor r 22.8 86 0.003 24.1 3.9 27 126-152 20-46 (115)
123 1ich_A TNF-1, tumor necrosis f 22.6 53 0.0018 25.2 2.6 25 129-153 28-52 (112)
124 3id7_A Dipeptidase; streptomyc 22.1 2E+02 0.007 26.2 6.9 44 107-150 317-361 (400)
125 2o38_A Hypothetical protein; a 22.0 1.5E+02 0.005 21.9 5.0 21 128-148 43-64 (120)
126 4gof_A Small glutamine-rich te 21.6 53 0.0018 22.1 2.2 34 63-96 14-48 (52)
127 3neu_A LIN1836 protein; struct 21.1 1.2E+02 0.0041 22.4 4.4 66 85-150 43-120 (125)
128 4hpz_A Dtale2; DNA binding pro 20.1 2.3E+02 0.008 26.6 6.8 40 60-99 175-218 (463)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.69 E-value=4.8e-17 Score=139.65 Aligned_cols=103 Identities=14% Similarity=0.300 Sum_probs=89.5
Q ss_pred HHHHHHHHh-hhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHH-HhCCCCHHHHHHHHhhcCceee
Q 028218 78 KWEACRQAL-STFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYL-RNLSLSDDDIRKLLKKFPEVLG 155 (212)
Q Consensus 78 ~we~~v~~L-~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefL-ksLG~Sd~eI~k~vkK~P~ILg 155 (212)
++...+++| +.+|++.+++.+++.+.+.+.+ .+.++++++++|+ +++|||++||.++|.++|.||+
T Consensus 110 ~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~------------~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~ 177 (270)
T 3m66_A 110 RLDNRLGFFQKELELSVKKTRDLVVRLPRLLT------------GSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT 177 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT------------SCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCccee------------echHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhe
Confidence 477888888 6788888888888877765543 3568899999976 5999999999999999999999
Q ss_pred cCccchhhhhhhhhhhccCcCchhHHHHHHhCCceeecccccc
Q 028218 156 CDIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVDCK 198 (212)
Q Consensus 156 ~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE~R 198 (212)
+| +++|+++++||++++|++ +++|+++|.+|+||+| |
T Consensus 178 ~s-~~~l~~k~~fL~~~mg~~----~~~i~~~P~~l~~Sle-r 214 (270)
T 3m66_A 178 AN-KMKLTETFDFVHNVMSIP----HHIIVKFPQVFNTRLF-K 214 (270)
T ss_dssp SC-HHHHHHHHHHHHTTSCCC----HHHHHHCGGGGGSCHH-H
T ss_pred ec-HHHHHHHHHHHHHHhCCC----HHHHHhCchHhhCCHH-H
Confidence 99 589999999999999998 7899999999999998 6
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.65 E-value=2.1e-16 Score=135.66 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhcCceeec
Q 028218 77 KKWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGC 156 (212)
Q Consensus 77 ~~we~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~ 156 (212)
++....+++|..+|++++++.+++.+.+.++.+ +.+++..+++||+++|+++++|.++++++|.+|++
T Consensus 39 ~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~------------~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~ 106 (270)
T 3m66_A 39 KDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSE------------DLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNF 106 (270)
T ss_dssp HHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGS------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGS
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhC------------CHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcC
Confidence 566889999999999999999999999877654 35779999999999999999999999999999999
Q ss_pred CccchhhhhhhhhhhccCcCchhHHHHHHhCCceeeccccc
Q 028218 157 DIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVDC 197 (212)
Q Consensus 157 SVEe~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE~ 197 (212)
|+| +++|+++||.+++|++++++.++|.++|.+|++|+|+
T Consensus 107 s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~ 146 (270)
T 3m66_A 107 SVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP 146 (270)
T ss_dssp CHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH
T ss_pred CHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH
Confidence 977 6999999997679999999999999999999999885
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.59 E-value=2.1e-15 Score=134.34 Aligned_cols=104 Identities=18% Similarity=0.323 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhh-hCCCChHHHHHHHHhhhh-ccccchhhhhhhhcCCChhhHHHHHHHHH----hCCCCHHHHHHHHhh
Q 028218 76 RKKWEACRQALS-TFNFSTEEEDKILGKAFG-HIHSAYWSEERKRETPELETVSEILGYLR----NLSLSDDDIRKLLKK 149 (212)
Q Consensus 76 ~~~we~~v~~L~-~LGfspe~v~~il~rA~g-l~~S~~fr~a~~~~v~s~e~i~aklefLk----sLG~Sd~eI~k~vkK 149 (212)
.++|++.+++|+ .+|++++++..++.+... +.+ .+.+.++++++|+. ++|||++||..+|.+
T Consensus 196 ~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~------------~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~ 263 (343)
T 3mva_O 196 TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILD------------LSNDYARRSYANIKEKLFSLGCTEEEVQKFVLS 263 (343)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGG------------CCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhh------------ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 368999999997 699999999888877432 111 24566777765554 899999999999999
Q ss_pred cCceeecCccchhhhhhhhhhhccCcCchhHHHHHHhCCceeecccccc
Q 028218 150 FPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVDCK 198 (212)
Q Consensus 150 ~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE~R 198 (212)
+|.||++| +++|+++++||.+ +|++ .++|+++|++|+||+| |
T Consensus 264 ~P~il~~s-~~~l~~k~~fl~~-mg~~----~~~i~~~P~~l~~sle-r 305 (343)
T 3mva_O 264 YPDVIFLA-EKKFNDKIDCLME-ENIS----ISQIIENPRVLDSSIS-T 305 (343)
T ss_dssp CGGGGGSC-HHHHHHHHHHHHT-TTCC----HHHHHHSGGGGGSCHH-H
T ss_pred CCchhccc-HHHHHHHHHHHHH-cCCC----HHHHHhCCHHHhcCHH-H
Confidence 99999999 5579999999999 9998 7899999999999999 5
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=134.52 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhhhhccccc---------hhhhh----------hh----hcCCChhhHHHHHHHH
Q 028218 77 KKWEACRQALSTFNFSTEEEDKILGKAFGHIHSA---------YWSEE----------RK----RETPELETVSEILGYL 133 (212)
Q Consensus 77 ~~we~~v~~L~~LGfspe~v~~il~rA~gl~~S~---------~fr~a----------~~----~~v~s~e~i~aklefL 133 (212)
++++..+++|..|||+++.+.+|+.+.+.+++.+ +|+.. .. ....+.+++..++.||
T Consensus 76 ~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L 155 (335)
T 4fp9_B 76 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLL 155 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHH
Confidence 4467788889889999999999999888774332 11111 00 1116677888888888
Q ss_pred H-hCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccCcCchhHHHHHHhCCceeecccc
Q 028218 134 R-NLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVD 196 (212)
Q Consensus 134 k-sLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE 196 (212)
+ ++|||++||.++|.++|.||++| +++|+++++||++++|++ ...|++ |++|+||+|
T Consensus 156 ~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~----~~eIvk-P~~l~ySLe 213 (335)
T 4fp9_B 156 KEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGIK----HPDIVK-SEYLQYSLT 213 (335)
T ss_dssp HHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCC----HHHHHH-TTGGGSCHH
T ss_pred HHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCCC----HHHccc-cchhhccHH
Confidence 6 88999999999999999999999 668999999999999997 566676 899999987
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=134.96 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhcCcee
Q 028218 75 ERKKWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVL 154 (212)
Q Consensus 75 ~~~~we~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~IL 154 (212)
-+.+||..++.|..+||+++.+.+++.+.++++ .+++..++.||.+||++.++|.++|+|+|.||
T Consensus 42 ~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il---------------~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL 106 (335)
T 4fp9_B 42 GSLELERVMSSLLDMGFSNAHINELLSVRRGAS---------------LQQLLDIISEFILLGLNPEPVCVVLKKSPQLL 106 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGG
T ss_pred ccccHHHHHHHHHHCCCCHHHHHHHHHhCcccc---------------hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhc
Confidence 355799999999999999999999999976442 36677899999999999999999999999999
Q ss_pred ecCccchhhhhhhhhhhccCcCchhHHHHHHhCCceeeccccc
Q 028218 155 GCDIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVDC 197 (212)
Q Consensus 155 g~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE~ 197 (212)
++|+ ++|+++++||.+ +|+++..+.++|.++|++|+||.+.
T Consensus 107 ~~s~-e~L~~~l~fL~~-lGl~~~~i~~ll~~~P~lL~~s~e~ 147 (335)
T 4fp9_B 107 KLPI-MQMRKRSSYLQK-LGLGEGKLKRVLYCCPEIFTMRQQD 147 (335)
T ss_dssp GSCH-HHHHHHHHHHHH-TTCTTTTHHHHHHHCGGGGTSCHHH
T ss_pred cCCH-HHHHHHHHHHHH-cCCCHHHHHHHHHhCchhhccChHH
Confidence 9996 489999999986 9999999999999999999999885
No 6
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.54 E-value=6.1e-15 Score=131.32 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=95.8
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhcCc-eeec
Q 028218 78 KWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPE-VLGC 156 (212)
Q Consensus 78 ~we~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~-ILg~ 156 (212)
..++.+++|..+|++.+++.+++.+.+.++.. +.+++.++++||+++|+++++|.++|.++|. ++++
T Consensus 50 ~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~------------~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s 117 (343)
T 3mva_O 50 NEQDLKMFLLSKGASKEVIASIISRYPRAITR------------TPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRS 117 (343)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGC------------CHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSC
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhC------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCC
Confidence 34688999999999999999999999876543 3578999999999999999999999999999 5566
Q ss_pred CccchhhhhhhhhhhccCcCchhHHHHHHhCCceeeccccc
Q 028218 157 DIEHELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVDC 197 (212)
Q Consensus 157 SVEe~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE~ 197 (212)
+.+++|+|+++||. ++|++.+++.+++.++|.+|+|++|+
T Consensus 118 ~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~ 157 (343)
T 3mva_O 118 NNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDL 157 (343)
T ss_dssp CCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHH
T ss_pred ChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHH
Confidence 63359999999999 59999999999999999999999986
No 7
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=92.33 E-value=0.13 Score=35.42 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhh
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK 149 (212)
+..|++||++=|++++||..+++|
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 669999999999999999999987
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=92.16 E-value=0.12 Score=43.46 Aligned_cols=93 Identities=17% Similarity=0.312 Sum_probs=51.1
Q ss_pred hhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhh
Q 028218 87 STFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNV 166 (212)
Q Consensus 87 ~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~Lkpkv 166 (212)
-.||++||-+-.++++.+.+..-| --.++.+-.||..||+-+..+.+++--.|+|..+. ...+...+
T Consensus 41 illglnpepvcvvlkkspqllklp------------imqmrkrssylqklglgegklkrvlyccpeiftmr-qqdindtv 107 (239)
T 4fzv_B 41 ILLGLNPEPVCVVLKKSPQLLKLP------------IMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTV 107 (239)
T ss_dssp HHHCCCTTHHHHHHHSCGGGGTSC------------HHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHH
T ss_pred HhhcCCCCceEEEecCCHHHhcCh------------HHHHHHHHHHHHHhCCCccchhhheecCcHHHHHH-HhhHhHHH
Confidence 478999999999999887663222 12233444555555555555555555555555555 44444445
Q ss_pred hhhhhccCcCchhHHHHHHhCCceee
Q 028218 167 QILGKDWGIEGKYLRNLLLRNPKVLG 192 (212)
Q Consensus 167 eFL~~~vGL~g~~l~~~I~r~P~ILg 192 (212)
..|.+..=+.-..+.+++-..|.+|.
T Consensus 108 rllkekclftvqqvtkilhscpsvlr 133 (239)
T 4fzv_B 108 RLLKEKCLFTVQQVTKILHSCPSVLR 133 (239)
T ss_dssp HHHHHHSCCCHHHHHHHHHHCGGGGT
T ss_pred HHHHHhHHhhHHHHHHHHHhCcHHHH
Confidence 44444433333444445555555443
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.12 E-value=1.6 Score=33.89 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=22.6
Q ss_pred cChHHHHHHHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 71 LNDEERKKWEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 71 ~~~~~~~~we~~v~~L~~LGfspe~v~~il~rA 103 (212)
|++++ .++++-|-.+||+.+++.+++...
T Consensus 4 l~~~e----~~~v~~l~~MGFp~~~~~kAl~~~ 32 (118)
T 4ae4_A 4 MSPSE----RQCVETVVNMGYSYECVLRAMKAA 32 (118)
T ss_dssp SCHHH----HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55554 468888999999999998887653
No 10
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=90.01 E-value=0.29 Score=35.42 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
+..|++||++=|++++||..++++.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 6699999999999999999999985
No 11
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=85.31 E-value=2.4 Score=28.24 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhCCC-ChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCC
Q 028218 77 KKWEACRQALSTFNF-STEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLS 139 (212)
Q Consensus 77 ~~we~~v~~L~~LGf-spe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~S 139 (212)
..|++.++-|..+|| +.+.+..++.... .++..-+++|-+.+.|
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------------------gnve~Ave~L~~~~~s 53 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATG-------------------GDINAAIERLLGSQLS 53 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------------------SCHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------------------CCHHHHHHHHHHcCCC
Confidence 468999999999999 8888888888763 3466888888876643
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.46 E-value=2 Score=39.14 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccCcC
Q 028218 124 ETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIE 176 (212)
Q Consensus 124 e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vGL~ 176 (212)
+.....|+.|.++||+++++.++++.. ..++-..++||.+ |+.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~--------~nn~~~A~e~L~~--gip 208 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT--GIP 208 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHS--------CSSTTHHHHTTTT--SST
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh--CCC
Confidence 446688999999999999999999853 3367778888864 454
No 13
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=77.24 E-value=2.5 Score=29.21 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHhhcCc-eeecCccchhhhhhh
Q 028218 124 ETVSEILGYLRNLSLSDDDIRKLLKKFPE-VLGCDIEHELRNNVQ 167 (212)
Q Consensus 124 e~i~aklefLksLG~Sd~eI~k~vkK~P~-ILg~SVEe~Lkpkve 167 (212)
+.....++-|.+||+++.|+.+++++-.. --..++|+-||..+.
T Consensus 15 ~~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 15 EAAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34467899999999999999999988511 002355655555443
No 14
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=73.29 E-value=5.9 Score=24.77 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.9
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA 103 (212)
|+.++-|..+||+.+.+.+++...
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999999998888776
No 15
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.12 E-value=5.1 Score=26.13 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHhhh
Q 028218 79 WEACRQALSTFNFSTEEEDKILGKAF 104 (212)
Q Consensus 79 we~~v~~L~~LGfspe~v~~il~rA~ 104 (212)
-++.++-|..+||+.+.+..++..+.
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 36788999999999999988888764
No 16
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=70.97 E-value=9.6 Score=31.93 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=74.3
Q ss_pred HHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHH-hCCCCHHHHHHHHhhcCceeecCccc
Q 028218 82 CRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLR-NLSLSDDDIRKLLKKFPEVLGCDIEH 160 (212)
Q Consensus 82 ~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLk-sLG~Sd~eI~k~vkK~P~ILg~SVEe 160 (212)
-..+|..||+......+++-++++++. +....+...+..|+ .-=|+-.++.+++...|.+|.-++.
T Consensus 71 rssylqklglgegklkrvlyccpeift------------mrqqdindtvrllkekclftvqqvtkilhscpsvlredlg- 137 (239)
T 4fzv_B 71 RSSYLQKLGLGEGKLKRVLYCCPEIFT------------MRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG- 137 (239)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHCGGGGT------------SCHHHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTT-
T ss_pred HHHHHHHhCCCccchhhheecCcHHHH------------HHHhhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHh-
Confidence 346788899998888888888876643 34688999999999 6788999999999999999999954
Q ss_pred hhhhhhhhhhhccCcCchhHHHHHHhCCceeecccc
Q 028218 161 ELRNNVQILGKDWGIEGKYLRNLLLRNPKVLGYNVD 196 (212)
Q Consensus 161 ~LkpkveFL~~~vGL~g~~l~~~I~r~P~ILgYSLE 196 (212)
.|.-++.|--=.+|+... -|++ ...|.||+.
T Consensus 138 qleykfqyayfrmgikhp----divk-seylqyslt 168 (239)
T 4fzv_B 138 QLEYKFQYAYFRMGIKHP----DIVK-SEYLQYSLT 168 (239)
T ss_dssp HHHHHHHHHHHTSCCCHH----HHHH-TTGGGSCHH
T ss_pred hhhhhHhHHHHHccCCCc----chhH-HHHHHHHHH
Confidence 788887766556899732 2332 346677764
No 17
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=70.35 E-value=6 Score=26.21 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHhCCC-CHHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 121 PELETVSEILGYLRNLSL-SDDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~-Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
+.++....+|+-|.++|| +++...+++++. ..++...++||.+
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 446778899999999999 888888888753 3468888998875
No 18
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=70.26 E-value=5 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=22.8
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 79 WEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 79 we~~v~~L~~LGfspe~v~~il~rA 103 (212)
.++++++|..|||++.++.+++.++
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3689999999999999999999886
No 19
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=68.77 E-value=5.9 Score=28.34 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
...+|+-|.++||+++++.+++++. ..++...++||.+.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 4578999999999999999999963 45788999999863
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.82 E-value=8.1 Score=25.14 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
-..+|+-|.++||+++++.+++++. ..++...++||.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4578999999999999999999853 3467788999985
No 21
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=66.68 E-value=7.4 Score=25.68 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhCCC-ChHHHHHHHHhhh
Q 028218 77 KKWEACRQALSTFNF-STEEEDKILGKAF 104 (212)
Q Consensus 77 ~~we~~v~~L~~LGf-spe~v~~il~rA~ 104 (212)
..|++.++-|..+|| +.+.+.+++....
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~ 38 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATG 38 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 457889999999999 8888888887764
No 22
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=65.02 E-value=8.8 Score=37.66 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhh-----h--hhhcCCChhhHHHHHHHHHhCCCCHHHH
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSE-----E--RKRETPELETVSEILGYLRNLSLSDDDI 143 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~-----a--~~~~v~s~e~i~aklefLksLG~Sd~eI 143 (212)
.+|.+.|++.+++++.+||++++...++.-.-++ +|---|.. . ....+.+.+ .-.++..| ||++.+++
T Consensus 240 ~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~-~l~~~a~L--Lgv~~~~L 316 (697)
T 1lkx_A 240 IDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK-SLAAAASC--LKTDQQSL 316 (697)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHH-HHHHHHHH--HTSCHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHH-HHHHHHHh--hCCCHHHH
Confidence 4688999999999999999999988877765443 44444543 1 111223333 33344433 79999999
Q ss_pred HHHHhhc
Q 028218 144 RKLLKKF 150 (212)
Q Consensus 144 ~k~vkK~ 150 (212)
.+++...
T Consensus 317 ~~~L~~r 323 (697)
T 1lkx_A 317 SIALCYR 323 (697)
T ss_dssp HHHHHBC
T ss_pred HHHHhcc
Confidence 9999854
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.88 E-value=6.7 Score=24.50 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
.+|+-|.++||++++..+++++. ..++...++||.+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHHc
Confidence 57899999999999999998863 3457777888864
No 24
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=64.71 E-value=12 Score=38.04 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhh--h-hcCCChhhHHHHHHHHHhCCCCHHHHHH
Q 028218 71 LNDEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEER--K-RETPELETVSEILGYLRNLSLSDDDIRK 145 (212)
Q Consensus 71 ~~~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~--~-~~v~s~e~i~aklefLksLG~Sd~eI~k 145 (212)
++.+|.+.|++.+++++.+||++++...|+.-.-++ +|---|.... . ..+.+.+ ...++..| ||++.+++.+
T Consensus 292 ~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~-~l~~~a~L--Lgv~~~~L~~ 368 (995)
T 2ycu_A 292 SPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNT-AAQKLCRL--LGLGVTDFSR 368 (995)
T ss_dssp STTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCH-HHHHHHHH--TTCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChH-HHHHHHHH--HCCCHHHHHH
Confidence 444899999999999999999999988887765454 3333343321 0 1122222 33344444 8999999999
Q ss_pred HHhhcCcee
Q 028218 146 LLKKFPEVL 154 (212)
Q Consensus 146 ~vkK~P~IL 154 (212)
++.. |.+-
T Consensus 369 ~l~~-~~~~ 376 (995)
T 2ycu_A 369 ALLT-PRIK 376 (995)
T ss_dssp HHHS-CEEE
T ss_pred HhcC-cEEE
Confidence 9975 4443
No 25
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.46 E-value=7.8 Score=28.48 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccC
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWG 174 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vG 174 (212)
.+|+-|..+||+++++.+++++. ..++...++||.+..|
T Consensus 31 e~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 31 ESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 67888999999999999999854 3468899999998655
No 26
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.39 E-value=8.5 Score=26.17 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|..+||++++..+++++. ..++...++||...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~A~e~L~~~ 47 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRAT--------NNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT--------TSCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 67888999999999999999975 23577889999863
No 27
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=63.34 E-value=13 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 79 WEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 79 we~~v~~L~~LGfspe~v~~il~rA 103 (212)
-++.++-|..+||+.+.+..++...
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3567888888899999998887765
No 28
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=63.09 E-value=33 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccC
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWG 174 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vG 174 (212)
.++.-|.++||+++++.++++++ .+++-..+|+|....|
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhcc
Confidence 57889999999999999999875 5678888999887554
No 29
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=62.55 E-value=5.9 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHhh
Q 028218 123 LETVSEILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 123 ~e~i~aklefLksLG~Sd~eI~k~vkK 149 (212)
.+.+...|+-|.++|+|++++.+++..
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345568999999999999999999874
No 30
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=62.29 E-value=7.8 Score=26.51 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=27.1
Q ss_pred hcCceeecCccchhhhhhhhhhhccCcCchhHHHHHHh
Q 028218 149 KFPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLLLR 186 (212)
Q Consensus 149 K~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r 186 (212)
+.|.|-..+ +-.+++||.+. ||+.+++-..+.|
T Consensus 21 ~dp~V~~sp----~~~K~~FL~sK-GLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQSP----LATRRAFLKKK-GLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGGSC----HHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CChhhhcCC----HHHHHHHHHHc-CCCHHHHHHHHHc
Confidence 578888777 66899999987 9999888877765
No 31
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=62.12 E-value=4.1 Score=29.20 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHh
Q 028218 78 KWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRN 135 (212)
Q Consensus 78 ~we~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLks 135 (212)
..++.++-|..+||+.+.+..+|.++. .++..-++||-+
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~-------------------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD-------------------DDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT-------------------SCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC-------------------CCHHHHHHHHHH
Confidence 347788999999999999999988874 345577788764
No 32
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=61.96 E-value=9.8 Score=22.92 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 127 SEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 127 ~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
..+|+-|.++||++++..++++..
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 367889999999999999987753
No 33
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=61.82 E-value=11 Score=28.71 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHhhhCCCChHHHHHHHHhhhh--------cc--c--cchhhhh------hhhcCCCh--------h--hHHHHHHH
Q 028218 81 ACRQALSTFNFSTEEEDKILGKAFG--------HI--H--SAYWSEE------RKRETPEL--------E--TVSEILGY 132 (212)
Q Consensus 81 ~~v~~L~~LGfspe~v~~il~rA~g--------l~--~--S~~fr~a------~~~~v~s~--------e--~i~aklef 132 (212)
+.++-|..+||+.+++.+.+....+ |+ + .+-+-.- ........ + .-..+|+-
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v~~ 84 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAI 84 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHHHH
Confidence 4677788899999999888876532 21 0 0101000 00000000 0 12467889
Q ss_pred HHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhcc
Q 028218 133 LRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDW 173 (212)
Q Consensus 133 LksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~v 173 (212)
|.++||+++++.++++.. ..++...++||.+..
T Consensus 85 L~~MGF~~~~a~~AL~~~--------~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 85 ITSMGFQRNQAIQALRAT--------NNNLERALDWIFSHP 117 (126)
T ss_dssp HHHHTSCHHHHHHHHHHH--------TSCHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 999999999999999853 346778899998643
No 34
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=61.75 E-value=14 Score=36.89 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhh---hcCCChhhHHHHHHHHHhCCCCHHHHHHHH
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERK---RETPELETVSEILGYLRNLSLSDDDIRKLL 147 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~---~~v~s~e~i~aklefLksLG~Sd~eI~k~v 147 (212)
.+|.+.|++.+++++.+||++++...|+.-.-++ +|---|..... ..+.+.+ ...++..| ||++.+++.+++
T Consensus 323 ~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~-~l~~~a~L--Lgv~~~~L~~aL 399 (783)
T 4db1_A 323 IDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTE-EADKSAYL--MGLNSADLLKGL 399 (783)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCH-HHHHHHHH--TTCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChH-HHHHHHHH--hCCCHHHHHHhh
Confidence 4688999999999999999999988887765443 33333433210 1112222 33444444 899999999999
Q ss_pred hhcCce
Q 028218 148 KKFPEV 153 (212)
Q Consensus 148 kK~P~I 153 (212)
.+ |.+
T Consensus 400 ~~-~~i 404 (783)
T 4db1_A 400 CH-PRV 404 (783)
T ss_dssp HS-CC-
T ss_pred cc-eEE
Confidence 85 444
No 35
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=61.61 E-value=20 Score=30.20 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=56.3
Q ss_pred cccChHHHH--HHHHHHHHh-hhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChh-hHHHHHHHHHhCCCCHHHHH
Q 028218 69 ITLNDEERK--KWEACRQAL-STFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELE-TVSEILGYLRNLSLSDDDIR 144 (212)
Q Consensus 69 ~~~~~~~~~--~we~~v~~L-~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e-~i~aklefLksLG~Sd~eI~ 144 (212)
..+++++.. --++-.+.| +.=|+.++.+.+|+....+-... +.... ....... .....++-|.+||+++.|+.
T Consensus 106 s~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl~~--~~~~~-~~~~~~~~~~~ea~~AL~~LGy~~~ea~ 182 (212)
T 2ztd_A 106 AVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGV--AATGG-ALSTNGHAVRSPVVEALVGLGFAAKQAE 182 (212)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTCC----------------CCHHHHHHHHHHTTCCHHHHH
T ss_pred HhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhcc--ccccc-cccccCcccHHHHHHHHHHcCCCHHHHH
Confidence 345555443 334445666 56688888888887665443211 00000 0011112 34678999999999999999
Q ss_pred HHHhhc-CceeecCccchhhhhhhhhh
Q 028218 145 KLLKKF-PEVLGCDIEHELRNNVQILG 170 (212)
Q Consensus 145 k~vkK~-P~ILg~SVEe~LkpkveFL~ 170 (212)
+++++- ..--..++|+-||..+..|.
T Consensus 183 ~av~~~~~~~~~~~~e~lir~ALk~L~ 209 (212)
T 2ztd_A 183 EATDTVLAANHDATTSSALRSALSLLG 209 (212)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999874 10003466776776666553
No 36
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=61.57 E-value=8.1 Score=25.49 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=32.1
Q ss_pred ChhhHHHHHHHHHhCCC-CHHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 122 ELETVSEILGYLRNLSL-SDDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 122 s~e~i~aklefLksLG~-Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
.++....+|+-|.++|| +++.+.+++++. ..++...++||.+
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLLG 50 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 35556789999999999 788888888742 3467778888764
No 37
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.06 E-value=4.1 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 121 PELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
++++ ..|+-|.++||++++..+++++- .+++.+.+|+|-+.
T Consensus 17 ~se~---e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH 57 (63)
T 1wgn_A 17 PSER---QCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHH---HHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHH
T ss_pred cchH---HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 5565 67999999999999999999975 45788888888654
No 38
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.10 E-value=7.5 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.8
Q ss_pred cChHHHHHHHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 71 LNDEERKKWEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 71 ~~~~~~~~we~~v~~L~~LGfspe~v~~il~rA 103 (212)
|++-+ ++||+-|-.+||+.+.+.++++.-
T Consensus 15 ls~se----~e~V~~LvsMGFs~~qA~kALKat 43 (63)
T 1wgn_A 15 LSPSE----RQCVETVVNMGYSYECVLRAMKKK 43 (63)
T ss_dssp CCHHH----HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hCcch----HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 55544 578999999999999998888775
No 39
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.87 E-value=13 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKAF 104 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA~ 104 (212)
++.++-|..+||+.+.+..++....
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 5678999999999999988877753
No 40
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=59.73 E-value=21 Score=26.24 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=42.2
Q ss_pred ccChHHHHHHHHHH-----------HHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCC
Q 028218 70 TLNDEERKKWEACR-----------QALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSL 138 (212)
Q Consensus 70 ~~~~~~~~~we~~v-----------~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~ 138 (212)
.|++.++.-+.-.. ++-+.+|+|.++|+....+|...+.. .-.-..--+|+..-|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~-------------~~~~~~l~~~~~~~~~ 85 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH-------------PSRSEVLRSGSSGSGT 85 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhcCC
Confidence 46666665544322 23367899999999999998632111 1112244579999999
Q ss_pred CHHHHHHHH
Q 028218 139 SDDDIRKLL 147 (212)
Q Consensus 139 Sd~eI~k~v 147 (212)
++.++.+++
T Consensus 86 ~~~~~~~~~ 94 (99)
T 3t72_q 86 PEEKLLRAI 94 (99)
T ss_pred CHHHHHHHH
Confidence 999988775
No 41
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=58.83 E-value=15 Score=36.90 Aligned_cols=77 Identities=18% Similarity=0.379 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhh---hcCCChhhHHHHHHHHHhCCCCHHHHHHHH
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERK---RETPELETVSEILGYLRNLSLSDDDIRKLL 147 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~---~~v~s~e~i~aklefLksLG~Sd~eI~k~v 147 (212)
.+|.+.|++.+++++.+||++++...++.-.-++ +|---|..... ..+.+.+ ...++..| ||++.+++.+++
T Consensus 322 ~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~-~l~~~a~L--Lgv~~~~L~~aL 398 (837)
T 1kk8_A 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTA-EAEKVAFL--CGINAGDLLKAL 398 (837)
T ss_dssp BCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSH-HHHHHHHH--HTSCHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHH-HHHHHHHH--HCCCHHHHHHHh
Confidence 4678999999999999999999988887765443 34334433210 1112222 33344433 799999999999
Q ss_pred hhcCce
Q 028218 148 KKFPEV 153 (212)
Q Consensus 148 kK~P~I 153 (212)
.. |.+
T Consensus 399 ~~-~~~ 403 (837)
T 1kk8_A 399 LK-PKV 403 (837)
T ss_dssp HS-CEE
T ss_pred cC-cEE
Confidence 75 444
No 42
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=56.73 E-value=8.5 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHhCCCCHH-HHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 123 LETVSEILGYLRNLSLSDD-DIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 123 ~e~i~aklefLksLG~Sd~-eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
++....+|+-|.++||++. .+.+++++. ..++...+++|.+
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~~~--------~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 45 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHc
Confidence 4566789999999999754 467887742 4567777887753
No 43
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=56.69 E-value=3 Score=37.98 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=23.4
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHhhh
Q 028218 79 WEACRQALSTFNFSTEEEDKILGKAF 104 (212)
Q Consensus 79 we~~v~~L~~LGfspe~v~~il~rA~ 104 (212)
.|+.++-|..+||+.+.+.++|..++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~ 193 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASY 193 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 68899999999999999999988764
No 44
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=55.70 E-value=13 Score=37.04 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhh--hcCCChhhHHHHHHHHHhCCCCHHHHHHHHh
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERK--RETPELETVSEILGYLRNLSLSDDDIRKLLK 148 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~--~~v~s~e~i~aklefLksLG~Sd~eI~k~vk 148 (212)
.+|.+.|.+..++++.+||++++...++.-.-++ +|-=-|..... ..+.+.+ ...++..| ||++.+++.+++.
T Consensus 318 ~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~-~l~~~a~L--Lgv~~~~L~~aL~ 394 (770)
T 1w9i_A 318 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT-ALNAASTV--FGVNPSVLEKALM 394 (770)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEECSSSSEECSCCH-HHHHHHHH--HTCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEecCCCCccccCChH-HHHHHHHH--hCCCHHHHHHHhh
Confidence 4678999999999999999999988887765444 33333431110 1122233 33333333 7999999999997
Q ss_pred hcCcee
Q 028218 149 KFPEVL 154 (212)
Q Consensus 149 K~P~IL 154 (212)
. |.+-
T Consensus 395 ~-~~~~ 399 (770)
T 1w9i_A 395 E-PRIL 399 (770)
T ss_dssp S-CEEE
T ss_pred C-cEEE
Confidence 4 4443
No 45
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.48 E-value=16 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|.++||+++++.++++.. ..++...++||.+.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 31 SSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 67889999999999999999863 34688889998763
No 46
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=54.45 E-value=17 Score=37.02 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhh-hh-cCCChhhHHHHHHHHHhCCCCHHHHHHHHh
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEER-KR-ETPELETVSEILGYLRNLSLSDDDIRKLLK 148 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~-~~-~v~s~e~i~aklefLksLG~Sd~eI~k~vk 148 (212)
.+|.+.|++.+++++.+||++++...|+.-.-++ +|---|.... .. .+.+.+ ...++..| ||++.+++.+++.
T Consensus 318 ~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~-~l~~~a~L--Lgv~~~~L~~~l~ 394 (1010)
T 1g8x_A 318 VSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT-ALNAASTV--FGVNPSVLEKALM 394 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTTSSCBCSCCH-HHHHHHHH--HTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCCCccccCChH-HHHHHHHH--HCCCHHHHHHHHh
Confidence 4678999999999999999999988887765444 3433443321 11 122222 33344433 7999999999997
Q ss_pred hcCce
Q 028218 149 KFPEV 153 (212)
Q Consensus 149 K~P~I 153 (212)
. |.+
T Consensus 395 ~-~~~ 398 (1010)
T 1g8x_A 395 E-PRI 398 (1010)
T ss_dssp S-CEE
T ss_pred C-cEE
Confidence 4 444
No 47
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=54.38 E-value=42 Score=26.36 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhhhc----CCChhhHHHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 81 ACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERKRE----TPELETVSEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 81 ~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~~~----v~s~e~i~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
+....|..-|++++.+..++.+..+. +.-.-|-+.-+.. -.+.. ....-|+.-|++++.|..++...
T Consensus 36 EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~---~I~~eL~~KGI~~~~I~~al~~~ 108 (162)
T 3dfg_A 36 ELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPL---HIRAELGTHGLDSDAVSAAMATF 108 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHH---HHHHHHHHTTCCHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHH---HHHHHHHHcCCCHHHHHHHHHhC
Confidence 45566766788888888888776543 2222121111110 12222 33445677888888877776554
No 48
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=53.97 E-value=24 Score=22.66 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhCCCCh-HHHHHHHHhhh
Q 028218 77 KKWEACRQALSTFNFST-EEEDKILGKAF 104 (212)
Q Consensus 77 ~~we~~v~~L~~LGfsp-e~v~~il~rA~ 104 (212)
..|++-++-|..+||+. +.+.+++..+.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~ 33 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSG 33 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhC
Confidence 56789999999999964 55677777764
No 49
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=53.42 E-value=16 Score=36.32 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhh--hhcCCChhhHHHHHHHHHhCCCCHHHHHHHHh
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEER--KRETPELETVSEILGYLRNLSLSDDDIRKLLK 148 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~--~~~v~s~e~i~aklefLksLG~Sd~eI~k~vk 148 (212)
.+|.+.|++.+++++.+||++++...++.-.-++ +|---|.... ...+...+....++..| ||++.+++.+++.
T Consensus 299 ~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~L--Lgv~~~~L~~aL~ 376 (795)
T 1w7j_A 299 IDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDL--MGVDYEEMAHWLC 376 (795)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHH--HTCCHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCcceeecCChHHHHHHHHH--hCCCHHHHHHHhc
Confidence 4678999999999999999999988887765444 3333343221 11222223333444444 7999999999997
Q ss_pred hcCcee
Q 028218 149 KFPEVL 154 (212)
Q Consensus 149 K~P~IL 154 (212)
. |.+.
T Consensus 377 ~-~~~~ 381 (795)
T 1w7j_A 377 H-RKLA 381 (795)
T ss_dssp E-EEEE
T ss_pred c-cEEE
Confidence 5 4443
No 50
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=51.78 E-value=52 Score=23.68 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcC---CChhhHHHHHHHHHhCCCCHHHHHHHHhh
Q 028218 83 RQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRET---PELETVSEILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 83 v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v---~s~e~i~aklefLksLG~Sd~eI~k~vkK 149 (212)
.+|...+|+++..+.+...-..+-+.. .++ .++ ++|++||+.+.||-++++.
T Consensus 6 f~FFl~aGv~~~~c~rYA~~F~~~ri~--------e~mL~Dl~~-------~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 6 FEFFLNCGVDVSNCQRYTINFDREQLT--------EDMMPDINN-------SMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCC--------GGGGGGCCH-------HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHccCC--------HHHHhhCCH-------HHHHHcCCchhhHHHHHHH
Confidence 467889999999997765443322111 111 222 5899999999999988764
No 51
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.49 E-value=15 Score=25.29 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|..+||+++++.+++++. ..++...++||...
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 67899999999999999998864 34688889999863
No 52
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=51.28 E-value=28 Score=35.66 Aligned_cols=79 Identities=15% Similarity=0.303 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhh--hhcCCChhhHHHHHHHHHhCCCCHHHHHHHHh
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEER--KRETPELETVSEILGYLRNLSLSDDDIRKLLK 148 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~--~~~v~s~e~i~aklefLksLG~Sd~eI~k~vk 148 (212)
.+|.+.|.+.+++++.+||++++...|+.-.-++ +|---|.... ....+.......++..| ||++.+++.+++.
T Consensus 325 ~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~l--Lg~~~~~l~~~l~ 402 (1184)
T 1i84_S 325 QQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHL--MGINVTDFTRSIL 402 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHH--TTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHH--HCCCHHHHHHHhc
Confidence 3688999999999999999999988887765454 3433443221 01112222233444444 8999999999998
Q ss_pred hcCcee
Q 028218 149 KFPEVL 154 (212)
Q Consensus 149 K~P~IL 154 (212)
. |.+-
T Consensus 403 ~-~~~~ 407 (1184)
T 1i84_S 403 T-PRIK 407 (1184)
T ss_dssp S-CCCC
T ss_pred C-cEEE
Confidence 5 4443
No 53
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.07 E-value=14 Score=25.32 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhh
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILG 170 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~ 170 (212)
...+|+-|.++||+++++.+++... ..++.-...+|.
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a--------~nnve~Aa~iL~ 45 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIA--------HNNIEMAKNILR 45 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh--------cCCHHHHHHHHH
Confidence 3477999999999999999998753 444554445554
No 54
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.02 E-value=11 Score=27.06 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhCCCC-hHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHh
Q 028218 77 KKWEACRQALSTFNFS-TEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRN 135 (212)
Q Consensus 77 ~~we~~v~~L~~LGfs-pe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLks 135 (212)
..|++-++-|..+||. .+.+.++|..+. .++..-+++|-+
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~-------------------Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATD-------------------GDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTT-------------------SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhC-------------------CCHHHHHHHHHh
Confidence 4578889999999995 566677777753 455677888764
No 55
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.06 E-value=14 Score=26.15 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=35.0
Q ss_pred CChhhHHHHHHHHHhCCCCHHHH-HHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 121 PELETVSEILGYLRNLSLSDDDI-RKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~Sd~eI-~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
+.++....+|+-|+++||++.+. .++++. . ..++...||+|.+.
T Consensus 14 ~pe~~y~~ql~qL~~MGF~d~~an~~AL~a-------t-~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 14 APEVRFSKEMECLQAMGFVNYNANLQALIA-------T-DGDTNAAIYKLKSS 58 (67)
T ss_dssp CHHHHTHHHHHHHHHHTCCCHHHHHHHHHH-------T-TSCHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHH-------c-CCCHHHHHHHHHhC
Confidence 55777889999999999987654 777764 2 56888999999873
No 56
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=48.81 E-value=23 Score=24.05 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhCCCC-hHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHh
Q 028218 77 KKWEACRQALSTFNFS-TEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRN 135 (212)
Q Consensus 77 ~~we~~v~~L~~LGfs-pe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLks 135 (212)
..|++-++-|..+||. .+.+.++|..+. .++.+-+++|-+
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~-------------------gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSG-------------------GSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHT-------------------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhC-------------------CCHHHHHHHHHh
Confidence 5779999999999996 556677777764 455577777764
No 57
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=47.46 E-value=36 Score=23.13 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=21.2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKAF 104 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA~ 104 (212)
++.++-|-.+||+.+++.+.+..+.
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~ 36 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQ 36 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4678899999999999988887763
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.90 E-value=26 Score=35.96 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhh--hhcCCChhhHHHHHHHHHhCCCCHHHHHHHHh
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEER--KRETPELETVSEILGYLRNLSLSDDDIRKLLK 148 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~--~~~v~s~e~i~aklefLksLG~Sd~eI~k~vk 148 (212)
.+|.+.|++.+++++.+||++++...|+.-.-++ +|---|.... ...++..+....++..| ||++.+++.+++.
T Consensus 299 ~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~L--Lgv~~~~L~~~l~ 376 (1080)
T 2dfs_A 299 IDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDL--MGVDYEEMAHWLC 376 (1080)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHH--HTCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHHHHHHH--hCCCHHHHHHHhc
Confidence 4678999999999999999999988887765454 3333343221 12222223333444444 7999999999997
Q ss_pred h
Q 028218 149 K 149 (212)
Q Consensus 149 K 149 (212)
.
T Consensus 377 ~ 377 (1080)
T 2dfs_A 377 H 377 (1080)
T ss_dssp E
T ss_pred c
Confidence 5
No 59
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=46.50 E-value=42 Score=24.81 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHhhhCCCChHHHHHHHHhhhhc-----cccc-hhhhhhhhcCCChhhHHHHHHHHHhCC-CCHHHHHHHHhhcCceeec
Q 028218 84 QALSTFNFSTEEEDKILGKAFGH-----IHSA-YWSEERKRETPELETVSEILGYLRNLS-LSDDDIRKLLKKFPEVLGC 156 (212)
Q Consensus 84 ~~L~~LGfspe~v~~il~rA~gl-----~~S~-~fr~a~~~~v~s~e~i~aklefLksLG-~Sd~eI~k~vkK~P~ILg~ 156 (212)
++.+.+|++++.+..++.++... ...+ ||.... -.+-+....++++..| ++-.|+..++ |.
T Consensus 25 ~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~-----~~~~~~~l~~~~~~~~~it~ae~Rd~l-------g~ 92 (121)
T 2pjp_A 25 DLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDR-----IVEFANMIRDLDQECGSTCAADFRDRL-------GV 92 (121)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHH-----HHHHHHHHHHHHHHHSSEEHHHHHHHH-------TS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHH-----HHHHHHHHHHHHHHCCCccHHHHHHHH-------CC
Confidence 45567888888887777775432 1222 221111 1222444555666554 7788888876 67
Q ss_pred CccchhhhhhhhhhhccCcC
Q 028218 157 DIEHELRNNVQILGKDWGIE 176 (212)
Q Consensus 157 SVEe~LkpkveFL~~~vGL~ 176 (212)
| -.-..|-.|||.+ .|++
T Consensus 93 s-RK~ai~lLE~~Dr-~g~T 110 (121)
T 2pjp_A 93 G-RKLAIQILEYFDR-IGFT 110 (121)
T ss_dssp C-HHHHHHHHHHHHH-HTSE
T ss_pred c-HHHHHHHHHHHhh-cCCe
Confidence 7 5566699999986 5775
No 60
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.20 E-value=9.6 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhCCCCHHH-HHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 124 ETVSEILGYLRNLSLSDDD-IRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 124 e~i~aklefLksLG~Sd~e-I~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
+....+|+-|+.+||++++ ..+++++. ..++...+++|.+
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 4456899999999998876 57887742 4578888888875
No 61
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.16 E-value=19 Score=25.81 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=33.9
Q ss_pred CChhhHHHHHHHHHhCCCC-HHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 121 PELETVSEILGYLRNLSLS-DDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~S-d~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
+.++....+|+-|+.+||+ ++.+.+++++. ..++...+|||.+
T Consensus 24 ~pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 24 FTEGRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp GTTTTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4566678999999999996 56668887742 5678899999986
No 62
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=45.75 E-value=29 Score=34.52 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhh-h---cC-CChhhHHHHHHHHHhCCCCHHHHHH
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERK-R---ET-PELETVSEILGYLRNLSLSDDDIRK 145 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~-~---~v-~s~e~i~aklefLksLG~Sd~eI~k 145 (212)
.+|.+.|++.+++|+.+||++++...++.-.-++ +|---|..... . .+ ......-.++..| ||++.+++.+
T Consensus 307 ~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~L--Lgv~~~~L~~ 384 (784)
T 2v26_A 307 LDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAEL--LGLDQDDLRV 384 (784)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHH--HTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHH--hCCCHHHHHH
Confidence 4688999999999999999999988887765444 33333433100 0 11 1112233333333 7999999999
Q ss_pred HHhh
Q 028218 146 LLKK 149 (212)
Q Consensus 146 ~vkK 149 (212)
++..
T Consensus 385 aL~~ 388 (784)
T 2v26_A 385 SLTT 388 (784)
T ss_dssp HHHE
T ss_pred HHhh
Confidence 9986
No 63
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.56 E-value=18 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhCCCChHH-HHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCC
Q 028218 78 KWEACRQALSTFNFSTEE-EDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLS 137 (212)
Q Consensus 78 ~we~~v~~L~~LGfspe~-v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG 137 (212)
.|++-++-|..+||+.+. +.++|.... .++..-+++|-+.+
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~-------------------Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATG-------------------GDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHT-------------------SCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcC-------------------CCHHHHHHHHHhCC
Confidence 578889999999997765 577777753 45667788877543
No 64
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.35 E-value=27 Score=24.60 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhCCCChHHH-HHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCC
Q 028218 77 KKWEACRQALSTFNFSTEEE-DKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLS 137 (212)
Q Consensus 77 ~~we~~v~~L~~LGfspe~v-~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG 137 (212)
.+|++-++-|..+||..+.. .++|..+. .++.+-|++|-+.+
T Consensus 17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~-------------------Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIATD-------------------GDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHTT-------------------SCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcC-------------------CCHHHHHHHHHhCC
Confidence 46799999999999976655 66766653 56778899988653
No 65
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.24 E-value=12 Score=25.45 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=33.1
Q ss_pred CChhhHHHHHHHHHhCCCC-HHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 121 PELETVSEILGYLRNLSLS-DDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~S-d~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
+.++....+|+-|.++||+ ++.+.+++++. ..++...+|+|.+
T Consensus 12 ~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~--------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 12 DPEERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 55 (58)
T ss_dssp SHHHHTHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 5567788999999999997 55668887742 4578888888875
No 66
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=45.01 E-value=21 Score=26.85 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=34.9
Q ss_pred hhhhhhcccChHHHHHHHHHHHHh-hhCCCChHHHHHHH-Hhhh
Q 028218 63 TAQVQSITLNDEERKKWEACRQAL-STFNFSTEEEDKIL-GKAF 104 (212)
Q Consensus 63 ~~~~~~~~~~~~~~~~we~~v~~L-~~LGfspe~v~~il-~rA~ 104 (212)
..+.+..++++|+++-.|=++++| +.+++++++....+ ..++
T Consensus 31 ~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~~D~~~~v~~~~~ 74 (92)
T 4asv_A 31 SSIVEKKEISEDGADSLNVAMDCISEAFGFEREAVSGILGKSEF 74 (92)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHSSB
T ss_pred HHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhhhHHHhhhcc
Confidence 455566789999999999999999 89999999987666 4443
No 67
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.83 E-value=31 Score=24.26 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA 103 (212)
++.++-|..+||+.+.+.+++...
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t 53 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKAS 53 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 456888999999999998888775
No 68
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.06 E-value=15 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
.+|+-|.++||++++..++++.. + ++...++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~----~-----n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT----S-----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS----C-----SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C-----CHHHHHHHHHc
Confidence 67888999999999999999975 2 36677888764
No 69
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=44.05 E-value=20 Score=25.69 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.2
Q ss_pred hcCceeecCccchhhhhhhhhhhccCcCchhHHHHHHh
Q 028218 149 KFPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLLLR 186 (212)
Q Consensus 149 K~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r 186 (212)
+.|.|-... +-.+++||+++ ||+.++|-..+.+
T Consensus 26 qdp~V~~sp----~~~K~~FL~sK-GLt~eEI~~Al~r 58 (70)
T 2w84_A 26 QNSRVRQSP----LATRRAFLKKK-GLTDEEIDMAFQQ 58 (70)
T ss_dssp CSTTGGGSC----HHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CChhhhhCC----HHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 578887777 66899999987 9999888877765
No 70
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.35 E-value=20 Score=24.25 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA 103 (212)
++.++-|..+||+.+.+.+++...
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t 33 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRAT 33 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 457888988999999998888775
No 71
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=42.55 E-value=26 Score=23.33 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhh
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK 149 (212)
+...|+-|.+.|++.+++.+++..
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568899999999999999998753
No 72
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=42.26 E-value=89 Score=22.57 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=44.7
Q ss_pred HHhhhCCCChHHHHHHHHhhhhccc------cchhhhhhhhcCCChhhHH--HHHHHHHhCCCCHHHHHHHHhhcCceee
Q 028218 84 QALSTFNFSTEEEDKILGKAFGHIH------SAYWSEERKRETPELETVS--EILGYLRNLSLSDDDIRKLLKKFPEVLG 155 (212)
Q Consensus 84 ~~L~~LGfspe~v~~il~rA~gl~~------S~~fr~a~~~~v~s~e~i~--aklefLksLG~Sd~eI~k~vkK~P~ILg 155 (212)
++-+.+|+++.+++---.. |++. .+|.. .+.+.+. ..+.+|+.+|+|-++|..++....
T Consensus 6 e~A~~~gvs~~tLR~ye~~--Gll~p~~r~~~g~R~-------Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~---- 72 (108)
T 2vz4_A 6 QVAGFAGVTVRTLHHYDDI--GLLVPSERSHAGHRR-------YSDADLDRLQQILFYRELGFPLDEVAALLDDPA---- 72 (108)
T ss_dssp HHHHHHTCCHHHHHHHHHH--TSSCCSEECSSCCEE-------BCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------
T ss_pred HHHHHHCcCHHHHHHHHHC--CCCCCCccCCCCCee-------cCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCc----
Confidence 3447789999888765433 5521 12111 2233333 567778999999999999997422
Q ss_pred cCccchhhhhhhhhhhc
Q 028218 156 CDIEHELRNNVQILGKD 172 (212)
Q Consensus 156 ~SVEe~LkpkveFL~~~ 172 (212)
.+..+.|..+.+.|.++
T Consensus 73 ~~~~~~l~~~~~~l~~~ 89 (108)
T 2vz4_A 73 ADPRAHLRRQHELLSAR 89 (108)
T ss_dssp ---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 13344566666665543
No 73
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.64 E-value=29 Score=25.38 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhC
Q 028218 80 EACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNL 136 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksL 136 (212)
++.++-|..+||+.+.+..+|.... .++..-++||-++
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------------------gdve~A~e~L~sh 67 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------------------GNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------------------CCHHHHHHHHHhC
Confidence 4578889899999999999888863 3355778888753
No 74
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=41.21 E-value=95 Score=22.39 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHhhhCCCChHHHHHHHHhhhhccc------cchhhhhhhhcCCChhhHH--HHHHHHHhCCCCHHHHHHHHhhcCceee
Q 028218 84 QALSTFNFSTEEEDKILGKAFGHIH------SAYWSEERKRETPELETVS--EILGYLRNLSLSDDDIRKLLKKFPEVLG 155 (212)
Q Consensus 84 ~~L~~LGfspe~v~~il~rA~gl~~------S~~fr~a~~~~v~s~e~i~--aklefLksLG~Sd~eI~k~vkK~P~ILg 155 (212)
++-+.+|+++.+++.--. .|++. ++|. ..+++.+. ..+..|+.+|+|-++|..++....
T Consensus 7 e~A~~~gvs~~tLR~ye~--~Gll~p~~~~~~g~R-------~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~---- 73 (109)
T 1r8d_A 7 QVAEISGVSIRTLHHYDN--IELLNPSALTDAGYR-------LYSDADLERLQQILFFKEIGFRLDEIKEMLDHPN---- 73 (109)
T ss_dssp HHHHHHSCCHHHHHHHHH--TTSSCCSEECTTCCE-------EBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCTT----
T ss_pred HHHHHHCcCHHHHHHHHH--CCCCCCCeECCCCCe-------eeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCC----
Confidence 345778999988876543 25521 1111 12333333 456678899999999999997532
Q ss_pred cCccchhhhhhhhhhhc
Q 028218 156 CDIEHELRNNVQILGKD 172 (212)
Q Consensus 156 ~SVEe~LkpkveFL~~~ 172 (212)
.+..+.|....+.|.+.
T Consensus 74 ~~~~~~l~~~~~~l~~~ 90 (109)
T 1r8d_A 74 FDRKAALQSQKEILMKK 90 (109)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 12334555566655543
No 75
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.01 E-value=20 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCH
Q 028218 83 RQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSD 140 (212)
Q Consensus 83 v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd 140 (212)
.+-|-..||+.+++...+++. +...+.+.+|+|...+.++
T Consensus 13 lq~L~eMGFd~erae~Alk~T------------------g~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQT------------------GSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH------------------TSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHh------------------CcccHHHHHHHHHHhcCCC
Confidence 466778999999997777775 2244779999998877653
No 76
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=39.82 E-value=25 Score=29.24 Aligned_cols=87 Identities=10% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHh-hhCCCChHHHHHHHHhhhhcccc---chhhhhhh----h-cCC-ChhhHHHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 81 ACRQAL-STFNFSTEEEDKILGKAFGHIHS---AYWSEERK----R-ETP-ELETVSEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 81 ~~v~~L-~~LGfspe~v~~il~rA~gl~~S---~~fr~a~~----~-~v~-s~e~i~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
+-++.| +.=|+.++.+.++.....+-... ..+..... . ..+ ........++-|.+||+++.|+.+++++-
T Consensus 105 ~d~~~L~~vpGIG~K~A~rI~~elk~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 105 EEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCSTTTCC-------------CCHHHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345667 45599999999998665332210 00000000 0 001 12345678999999999999999999986
Q ss_pred CceeecCccchhhhhhhh
Q 028218 151 PEVLGCDIEHELRNNVQI 168 (212)
Q Consensus 151 P~ILg~SVEe~LkpkveF 168 (212)
. --..++|+-||..+..
T Consensus 185 ~-~~~~~~e~lir~ALk~ 201 (203)
T 1cuk_A 185 A-RPDASSETLIREALRA 201 (203)
T ss_dssp C-CSSCCHHHHHHHHHHT
T ss_pred c-ccCCCHHHHHHHHHHH
Confidence 2 0123556555555443
No 77
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=39.67 E-value=77 Score=20.63 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHh-hhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHH-hCCCCHHHHHH
Q 028218 74 EERKKWEACRQAL-STFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLR-NLSLSDDDIRK 145 (212)
Q Consensus 74 ~~~~~we~~v~~L-~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLk-sLG~Sd~eI~k 145 (212)
.+...+-+-...+ +..|++.+++. +..|+-.+.+-+.+.-...++.+++...++.|. .+|++.+++..
T Consensus 6 ~~~~~~~~~l~~~r~~~glsq~~lA----~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 6 HRYRCLVQLLTKLRKEASLSQSELA----IFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHH----HHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH----HHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHc
Confidence 3344444444444 67888877763 333332232222233233466666666666665 66888777654
No 78
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=39.07 E-value=21 Score=29.43 Aligned_cols=82 Identities=12% Similarity=0.132 Sum_probs=18.6
Q ss_pred HHHHHh-hhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhc-CceeecCc
Q 028218 81 ACRQAL-STFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKF-PEVLGCDI 158 (212)
Q Consensus 81 ~~v~~L-~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~-P~ILg~SV 158 (212)
+-.+.| +.=|+.++.+.++.....+-.... +... . .+........++-|.+||+++.|+.+++++- ..--..++
T Consensus 104 ~d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~-~~~~--~-~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~ 179 (191)
T 1ixr_A 104 GDARLLTSASGVGRRLAERIALELKGKVPPH-LLAG--E-KVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPKARA 179 (191)
T ss_dssp TCHHHHTTSTTCCHHHHHHHHHHHTTTSCSC-C-----------------------------------------------
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHHhhccc-cccc--c-ccccccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH
Confidence 345667 455999999999977653322110 1100 0 0111234568899999999999999999874 11002355
Q ss_pred cchhhhhh
Q 028218 159 EHELRNNV 166 (212)
Q Consensus 159 Ee~Lkpkv 166 (212)
|+-||..+
T Consensus 180 e~lir~aL 187 (191)
T 1ixr_A 180 QDLIKEAL 187 (191)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555443
No 79
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=38.62 E-value=1e+02 Score=24.55 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=49.9
Q ss_pred HHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhhhc-----CCChhhHHHHHHHHHhCCCCHHHHHHHHhhcCc----
Q 028218 84 QALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERKRE-----TPELETVSEILGYLRNLSLSDDDIRKLLKKFPE---- 152 (212)
Q Consensus 84 ~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~~~-----v~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~---- 152 (212)
..|..-|++++.+..++.+..+. +.-.-|-+.-+.. --++- ....-|+.-|++++.|..++..++.
T Consensus 40 ~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~---~I~~eL~~KGI~~~~I~~al~~~~~~de~ 116 (177)
T 3e3v_A 40 DKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPK---VIKLNLSKKGIDDNIAEDALILYTDKLQV 116 (177)
T ss_dssp TTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHH---HHHHHHHTTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHH---HHHHHHHHcCCCHHHHHHHHHhCCchhHH
Confidence 33444577777777777775543 2222221111111 12223 3334466778887777777654431
Q ss_pred -------------eeecCccchhhhhhhhhhhccCcCchhHHHHHHh
Q 028218 153 -------------VLGCDIEHELRNNVQILGKDWGIEGKYLRNLLLR 186 (212)
Q Consensus 153 -------------ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I~r 186 (212)
.-..+-.+.-+..+.||... |++.+.+...|..
T Consensus 117 e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rr-GF~~~~I~~vl~~ 162 (177)
T 3e3v_A 117 EKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTK-GFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 11112111223446688875 8886666665543
No 80
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=38.60 E-value=23 Score=25.61 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=34.5
Q ss_pred hhhhhhcccChHHHHHHHHHHHHh-hhCCCChHHHHHHH-Hhhh
Q 028218 63 TAQVQSITLNDEERKKWEACRQAL-STFNFSTEEEDKIL-GKAF 104 (212)
Q Consensus 63 ~~~~~~~~~~~~~~~~we~~v~~L-~~LGfspe~v~~il-~rA~ 104 (212)
..+.+..++++|+++-.|=++++| +.+++++++....+ ..++
T Consensus 19 ~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~~d~~~~v~~~~~ 62 (74)
T 2lxb_A 19 SSIVEKKEISEDGADSLNVAMDCISEAFGFEREAVSGILGKSEF 62 (74)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCTTTHHHHHTTCCC
T ss_pred HHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHhcc
Confidence 445556789999999999999999 89999999987666 4443
No 81
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=36.26 E-value=24 Score=29.32 Aligned_cols=27 Identities=11% Similarity=0.275 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 77 KKWEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 77 ~~we~~v~~L~~LGfspe~v~~il~rA 103 (212)
..+++++++|..||+++.++.+++.++
T Consensus 158 ~~~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 158 DAEQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 346899999999999999999998886
No 82
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=36.11 E-value=94 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=18.1
Q ss_pred hhhhhhhcccChHHHHHHHHHHHHh----hhCCCChHHHHHH
Q 028218 62 STAQVQSITLNDEERKKWEACRQAL----STFNFSTEEEDKI 99 (212)
Q Consensus 62 ~~~~~~~~~~~~~~~~~we~~v~~L----~~LGfspe~v~~i 99 (212)
+++|..++.=+..-.+.-|.....+ ...||+|+.+-+|
T Consensus 68 s~~qvvaIA~n~GGkqAleaV~~l~p~L~~a~gLs~~qVVaI 109 (499)
T 3v6t_A 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 109 (499)
T ss_dssp CHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCHHHhhhh
Confidence 4445544444444444444444433 1255666665444
No 83
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.89 E-value=35 Score=24.79 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCC
Q 028218 80 EACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSL 138 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~ 138 (212)
++.++-|..+||+.+.+.++|... ...+..-++||-++..
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~-------------------n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN-------------------NMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------------------TSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------------------CCCHHHHHHHHHHCcC
Confidence 678888988999999998888432 1345577888876654
No 84
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=33.96 E-value=42 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHhh
Q 028218 125 TVSEILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 125 ~i~aklefLksLG~Sd~eI~k~vkK 149 (212)
-....|+-|.+.|+|++++.+++..
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHH
Confidence 3557899999999999999998753
No 85
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=33.63 E-value=1.1e+02 Score=22.75 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=40.9
Q ss_pred HhhhCCCChHHHHHHHHhhh--hc----cccchhhhhhhhcCCChhh-------HHHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 85 ALSTFNFSTEEEDKILGKAF--GH----IHSAYWSEERKRETPELET-------VSEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 85 ~L~~LGfspe~v~~il~rA~--gl----~~S~~fr~a~~~~v~s~e~-------i~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
.-+.+|.|.-.+++++.+.. |+ .++++|=............ +...+.-+..+|++.+++.+++.++
T Consensus 44 La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~eel~~l~~~~ 122 (134)
T 4ham_A 44 FASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIANQTDKLSSPKKLAETRTKLKETILDLVYLGVNIEEIHKLADEY 122 (134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEEeCCchhhccHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33789999999999999854 44 5677663221111122222 3333444557899999988887653
No 86
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.45 E-value=42 Score=22.77 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCChhhHHHHHHHHHhCCCCH-HHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 120 TPELETVSEILGYLRNLSLSD-DDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 120 v~s~e~i~aklefLksLG~Sd-~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
++++|.-+.+|+-|..+||.+ +.-.+++++. ..+|...|+.|..
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~--------~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDRQLNLRLLKKH--------NYNILQVVTELLQ 47 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCHHHHHHHHTTT--------TTCHHHHHHHHHH
T ss_pred CCHHHhhHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 456787888999999999965 4455565553 4567777777764
No 87
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=32.52 E-value=43 Score=24.35 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhcCcee
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKKFPEVL 154 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK~P~IL 154 (212)
+..--+|.+.||+|+.+|..+-..+|.=+
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~ 40 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDT 40 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCCh
Confidence 44566788899999999999999999743
No 88
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=32.00 E-value=34 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 78 KWEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 78 ~we~~v~~L~~LGfspe~v~~il~rA 103 (212)
..++++++|..||+++.++.+++.++
T Consensus 163 ~~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 163 VRSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34789999999999999999999886
No 89
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=31.72 E-value=40 Score=23.66 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHhh
Q 028218 128 EILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK 149 (212)
..|.+|+.+|||=+||..++.-
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 5788899999999999999974
No 90
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.65 E-value=37 Score=23.86 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|..+||+++...++++..- ..++...++||.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~-------n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTG-------NSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHT-------SCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCCHHHHHHHHHhC
Confidence 577888899999999999988532 12488899999864
No 91
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=31.59 E-value=1.1e+02 Score=29.01 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=44.6
Q ss_pred hhhhhhhhhcccChHHHHHHHHHHHHhh----hCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHH-
Q 028218 60 IYSTAQVQSITLNDEERKKWEACRQALS----TFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLR- 134 (212)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~we~~v~~L~----~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLk- 134 (212)
-++++|..++.-++.-.+.-|.+...|. ..||+++.+-+|-..- + =++++ |.+.+-+-.|+
T Consensus 100 gLs~~qVVaIAsn~GGkqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~----G---GkQAL-------eaV~~llpvL~~ 165 (499)
T 3v6t_A 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD----G---GKQAL-------ETVQALLPVLCQ 165 (499)
T ss_dssp CCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSST----T---HHHHH-------HHHHHHHHHHHH
T ss_pred CCCHHHhhhhhhcCccHHHHHHHHHhhHHhhhhcCCCHHHhHHHhhcC----C---cHHHH-------HHHHHhhHHHHH
Confidence 3678888888777766666666666553 3599999987664320 0 01122 55555555555
Q ss_pred hCCCCHHHHHHHH
Q 028218 135 NLSLSDDDIRKLL 147 (212)
Q Consensus 135 sLG~Sd~eI~k~v 147 (212)
.+|+|.++|.++-
T Consensus 166 a~gls~~qVvaIA 178 (499)
T 3v6t_A 166 AHGLTPEQVVAIA 178 (499)
T ss_dssp TSCCCHHHHHHHH
T ss_pred hcCCCHHHHHHHh
Confidence 4666666666553
No 92
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=31.08 E-value=1.8e+02 Score=22.24 Aligned_cols=54 Identities=13% Similarity=0.253 Sum_probs=38.5
Q ss_pred ccChHHHHHHHHHHHHhhh--C---CCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCC
Q 028218 70 TLNDEERKKWEACRQALST--F---NFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLS 139 (212)
Q Consensus 70 ~~~~~~~~~we~~v~~L~~--L---Gfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~S 139 (212)
.|++||-+ +.+..|.. - -++..++..+..+.- ...|+++.|.++-+.|...||+
T Consensus 43 ~Ltddev~---~Va~~L~~~~~~~~pi~~~dI~~~It~vT-------------~~~P~~eDi~RV~arLaa~GWP 101 (107)
T 3ol3_A 43 SLTEDEVV---RAAQAILRSTDGQSPVTDDDIRNAVHQII-------------EKEPTAEEINQVAARLASVGWP 101 (107)
T ss_dssp CCCHHHHH---HHHHHHHHHCCSSSCBCHHHHHHHHHHHH-------------SSCCCHHHHHHHHHHHHTTTCC
T ss_pred cCCHHHHH---HHHHHHHhccCCCCCCCHHHHHHHHHHHh-------------cCCcCHHHHHHHHHHHHhcCCC
Confidence 47777554 44455522 2 156677777777752 5668999999999999999997
No 93
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=31.06 E-value=61 Score=24.73 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCCCCh-HHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCC
Q 028218 77 KKWEACRQALSTFNFST-EEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLS 137 (212)
Q Consensus 77 ~~we~~v~~L~~LGfsp-e~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG 137 (212)
..|++-++-|..+||.. +.+.++|..+. .++.+-|++|-+.|
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t~-------------------Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQATG-------------------GDIQAALELIFAGG 106 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHHT-------------------SCHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHhC-------------------CCHHHHHHHHHhcC
Confidence 36788999999999966 68878877764 55668888888654
No 94
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.91 E-value=33 Score=26.47 Aligned_cols=54 Identities=19% Similarity=0.101 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccCcCchhHHHHHH
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLLL 185 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I~ 185 (212)
.-+.+++.||+|++|+.-++. |..+.-+++--|..+-|-+.+|++...+.++|.
T Consensus 20 ~LL~~y~~LgLs~~E~~lLl~----L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 20 LLLTHYKQLGLNETELILLLK----IKMHLEKGSYFPTPNQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH----HHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH----HHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 568889999999999877764 333332444557778888888888766666654
No 95
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=30.45 E-value=10 Score=35.53 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=10.9
Q ss_pred hCCceeeccccccc---ccccccchhhc
Q 028218 186 RNPKVLGYNVDCKG---DCMAQCTRCWV 210 (212)
Q Consensus 186 r~P~ILgYSLE~Rg---~c~~~c~rcw~ 210 (212)
..|..+...++... -=-++|+|||+
T Consensus 52 ~~~~~F~~~~~~~vtpVknQg~cGsCWa 79 (457)
T 2e01_A 52 QDNRVFNTVVSTDSTPVTNQKSSGRCWL 79 (457)
T ss_dssp HCCCCCSEECC------------CCHHH
T ss_pred CCCCceEEEecCCccCcccCCCCccchh
Confidence 45665555555433 12479999996
No 96
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.26 E-value=60 Score=22.78 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=28.9
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhC
Q 028218 80 EACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNL 136 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksL 136 (212)
++.++-|..+||+.+.+.+++....+ ..+..-++||-++
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------------------~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------------------SGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------------------CCHHHHHHHHHhC
Confidence 56788898899999999888877631 1245778888754
No 97
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=30.15 E-value=1.1e+02 Score=23.74 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=39.9
Q ss_pred ccChHHHHHHHHHHHHhhhC--------CCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCH
Q 028218 70 TLNDEERKKWEACRQALSTF--------NFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSD 140 (212)
Q Consensus 70 ~~~~~~~~~we~~v~~L~~L--------Gfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd 140 (212)
.|++||-+ +++..|..- -++.+++..++.+.- ...|+++.|.++-+-|..-||+-
T Consensus 40 ~LtdeEV~---~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT-------------~e~P~peDI~RV~arLaA~GWPl 102 (112)
T 2m0n_A 40 TLTEEQVQ---EVVAKLTDPESSAQIDGVVSKDEIEKFIADVT-------------KDEPTAQDISRVASRLAAGGWPL 102 (112)
T ss_dssp SCCHHHHH---HHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTT-------------TCCCCHHHHHHHHHHHHHCCTTT
T ss_pred cCCHHHHH---HHHHHHHhccCcccCCCCCCHHHHHHHHHHHh-------------ccCcCHHHHHHHHHHHHhcCCCC
Confidence 36666543 455555222 267788888877752 56799999999999999999973
No 98
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.52 E-value=44 Score=22.77 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|.++||+++.+.++++.. . ..++...++||.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t------~-~~nve~A~ewLl~~ 48 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALT------G-NQGIEAAMDWLMEH 48 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHH------T-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh------c-CCCHHHHHHHHHhC
Confidence 46788889999999999999832 1 24688899999863
No 99
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=29.27 E-value=27 Score=22.50 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=19.9
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA 103 (212)
+++++-|..+||+...+.+++...
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 577889999999999997776654
No 100
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.25 E-value=54 Score=22.14 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=26.6
Q ss_pred hhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHH
Q 028218 86 LSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLL 147 (212)
Q Consensus 86 L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~v 147 (212)
-+.+|+++.++..++..-.+ ..-.++++.....+..+.||......++.+
T Consensus 7 A~~aGVS~sTVSrvLng~~~------------~~~vs~et~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAK------------QYRVSDKTVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTT------------TTTCTTHHHHHHHHHHHHHTCCCC------
T ss_pred HHHHCcCHHHHHHHHcCCCC------------CCCCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 35677777777666543210 002356777777777777787665555444
No 101
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.68 E-value=40 Score=22.98 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhh
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGK 171 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~ 171 (212)
.+|+-|..+||++++..++++..-. .++...++||.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHh
Confidence 4678888899999999999986321 268888999985
No 102
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.36 E-value=69 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.8
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA 103 (212)
++.++-|..+||+.+.+.+++...
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t 53 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN 53 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 557888988999999998887764
No 103
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=28.33 E-value=42 Score=26.07 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=42.5
Q ss_pred CChhhHHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccCcCchhHHHHH
Q 028218 121 PELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLL 184 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I 184 (212)
++.+.+..-++.|+.+|+.+.|+..++--.|. + -..|..-||-..+. |+++++.++|
T Consensus 72 q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~----t-~vel~~iIEe~e~R--fsee~ie~IL 128 (136)
T 3ayh_A 72 LTKERFLDCIAIFNEFELTKAEILVILNNKPS----S-VPELYACIEGIEER--FKEEDIFKLV 128 (136)
T ss_dssp CCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCC----S-HHHHHHHSTTHHHH--HTTTTHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCHHHHHHHhccCCC----C-HHHHHHHHHhcccC--CCHHHHHHHH
Confidence 56899999999999999999999999999996 3 23466666666543 4454444443
No 104
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=28.21 E-value=25 Score=32.94 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=19.8
Q ss_pred HHHHhCCceeeccccccc---ccccccchhhc
Q 028218 182 NLLLRNPKVLGYNVDCKG---DCMAQCTRCWV 210 (212)
Q Consensus 182 ~~I~r~P~ILgYSLE~Rg---~c~~~c~rcw~ 210 (212)
+.+...|..+...++... -=-++|+|||+
T Consensus 43 ~~~~~~~~~F~~~~~~~~tpVknQg~cGsCWa 74 (453)
T 2cb5_A 43 ATVQRAQHVFQHAVPQEGKPITNQKSSGRSWI 74 (453)
T ss_dssp HHHHHCCCCCSEECSCCCSSCCBCCBSSCHHH
T ss_pred hhcccCCCceeeeeccCCCCcccCCCccchHh
Confidence 345566777777777554 23579999996
No 105
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=27.90 E-value=1.3e+02 Score=22.13 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=35.3
Q ss_pred ccchhhhhhhhhhhhhcccChHH--HHHH---------HHHHHHhhhCCCChHHHHHHHHhhhh
Q 028218 53 VYLKKWAIYSTAQVQSITLNDEE--RKKW---------EACRQALSTFNFSTEEEDKILGKAFG 105 (212)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~--~~~w---------e~~v~~L~~LGfspe~v~~il~rA~g 105 (212)
++.+-+.++..||..|....... ..+| .-+..+|+.+|.+++.+...+.+..+
T Consensus 6 ~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~ 69 (150)
T 2y1q_A 6 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIG 69 (150)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred hCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45677788888887774332211 1122 12567889999999999988887654
No 106
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.56 E-value=20 Score=33.78 Aligned_cols=70 Identities=13% Similarity=-0.035 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhcCcee
Q 028218 75 ERKKWEACRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVSEILGYLRNLSLSDDDIRKLLKKFPEVL 154 (212)
Q Consensus 75 ~~~~we~~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~IL 154 (212)
+++..++.+.+|...|+++.-+.++.+.-- ++...+|+..|+.|
T Consensus 3 ~~~~~~~~~~~l~~~g~~~~~a~~i~~~yg------------------------------------~~~~~~i~~nPy~l 46 (574)
T 3e1s_A 3 QQGLERRLLAGLQGLGLTINQAQRAVKHFG------------------------------------ADALDRLEKDLFTL 46 (574)
T ss_dssp -----------------------------------------------------------------------------CGG
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHH------------------------------------HHHHHHHHhCCccc
Confidence 455667778888888888887766655421 23345566677777
Q ss_pred ecCccchhhhhhhhhhhccCcCchhHH
Q 028218 155 GCDIEHELRNNVQILGKDWGIEGKYLR 181 (212)
Q Consensus 155 g~SVEe~LkpkveFL~~~vGL~g~~l~ 181 (212)
.+++.-==.+.|-+-..+|+..++..
T Consensus 47 -~~i~gigf~~aD~ia~~~g~~~~~~~ 72 (574)
T 3e1s_A 47 -TEVEGIGFLTADKLWQARGGALDDPR 72 (574)
T ss_dssp -GTSSSCCHHHHHTTC-------CCHH
T ss_pred -CCcCCCCHHHHHHHHHHcCCCCCCHH
Confidence 66554333345555555666544443
No 107
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=27.11 E-value=67 Score=33.06 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhhhCCCChHHHHHHHHhhhhc--cccchhhhhhhhc--C-CChhhHHHHHHHHH-hCCCCHHHHHHH
Q 028218 73 DEERKKWEACRQALSTFNFSTEEEDKILGKAFGH--IHSAYWSEERKRE--T-PELETVSEILGYLR-NLSLSDDDIRKL 146 (212)
Q Consensus 73 ~~~~~~we~~v~~L~~LGfspe~v~~il~rA~gl--~~S~~fr~a~~~~--v-~s~e~i~aklefLk-sLG~Sd~eI~k~ 146 (212)
.+|.+.|++..++|+.+||++++...|+.-.-++ +|-=-|....... . .... =...++... =||++.+++.++
T Consensus 311 ~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~-~~~~l~~~a~LLgv~~~~L~~a 389 (1052)
T 4anj_A 311 LDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNK-STQALEYCAELLGLDQDDLRVS 389 (1052)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGG-GHHHHHHHHHHTTCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccC-ChHHHHHHHHHhCCCHHHHHHH
Confidence 3688999999999999999999998887765444 3333343221110 0 0011 012233333 489999999998
Q ss_pred Hhh
Q 028218 147 LKK 149 (212)
Q Consensus 147 vkK 149 (212)
+..
T Consensus 390 Lt~ 392 (1052)
T 4anj_A 390 LTT 392 (1052)
T ss_dssp HHE
T ss_pred Hhh
Confidence 764
No 108
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=27.10 E-value=1.6e+02 Score=22.18 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=36.1
Q ss_pred HHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHH--HHHHHHHhCCCCHHHHHHHHhh
Q 028218 84 QALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVS--EILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 84 ~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~--aklefLksLG~Sd~eI~k~vkK 149 (212)
++-+.+|+++.+++---.. |++..+ .+...-.-..+.+.+. ..+..|+.+|+|-++|..++..
T Consensus 5 e~A~~~gvs~~tLR~ye~~--Gll~p~-~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 5 DVAKITGLTSKAIRFYEEK--GLVTPP-MRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp HHHHHHTCCHHHHHHHHHT--TCSCCC-EECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHC--CCCCCC-ccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 3446789999888655332 442111 0000000112334333 4667788999999999999964
No 109
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.76 E-value=70 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhh
Q 028218 80 EACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 80 e~~v~~L~~LGfspe~v~~il~rA 103 (212)
++.++-|..+||+.+.+.+++...
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t 53 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT 53 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567888988999999998887765
No 110
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.66 E-value=1.8e+02 Score=22.21 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=36.9
Q ss_pred HHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhHH--HHHHHHHhCCCCHHHHHHHHhh
Q 028218 84 QALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETVS--EILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 84 ~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i~--aklefLksLG~Sd~eI~k~vkK 149 (212)
++-+.+|+++.+++---.. |++..+ -+..--.-..+++.+. ..|..|+.+|+|-++|..++..
T Consensus 7 e~A~~~gvs~~tLR~Ye~~--GLl~p~-~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 7 EASEKSGVSADTIRYYERI--GLIPPI-HRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHTSCHHHHHHHHHH--TSSCCC-CBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHC--CCCCCC-cCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3447789999888655333 552110 0000000112334433 5777888999999999999874
No 111
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=25.56 E-value=16 Score=24.32 Aligned_cols=8 Identities=50% Similarity=1.863 Sum_probs=6.5
Q ss_pred cccchhhc
Q 028218 203 AQCTRCWV 210 (212)
Q Consensus 203 ~~c~rcw~ 210 (212)
.-|.|||+
T Consensus 28 r~C~rCw~ 35 (46)
T 2c6a_A 28 SHCNRCWA 35 (46)
T ss_dssp SSCTTTCC
T ss_pred chhhHHHh
Confidence 56999997
No 112
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=25.11 E-value=2.7e+02 Score=22.40 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhh
Q 028218 123 LETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILG 170 (212)
Q Consensus 123 ~e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~ 170 (212)
......||+-|.++||+++++..++++. .-.+-..+++|.
T Consensus 160 ~~~~eekV~~l~~MGf~~~~a~~AL~~~--------~wd~~~A~e~L~ 199 (201)
T 3k9o_A 160 SPEYTKKIENLCAMGFDRNAVIVALSSK--------SWDVETATELLL 199 (201)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHh
Confidence 3456799999999999999999999986 234555666654
No 113
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=25.11 E-value=83 Score=24.93 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=41.8
Q ss_pred CChhhHHHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhccCcCchhHHHHH
Q 028218 121 PELETVSEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKDWGIEGKYLRNLL 184 (212)
Q Consensus 121 ~s~e~i~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~vGL~g~~l~~~I 184 (212)
.+++++.+.++.|+.+|+.+.++..++.-.|. + -+.++--+.-+.. .++++.+.++|
T Consensus 85 k~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~----t-~dEar~lipsl~~--r~sdEeLe~IL 141 (152)
T 2c35_A 85 KNRETIASVRSLLLQKKLHKFELACLANLCPE----T-AEESKALIPSLEG--RFEDEELQQIL 141 (152)
T ss_dssp CSHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS----S-HHHHHHHCGGGTT--TSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHhccCCCC----C-HHHHHHHHHhhcc--CCCHHHHHHHH
Confidence 36788888889999999999999999999998 4 2356666666653 35555554443
No 114
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.73 E-value=82 Score=22.80 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 127 SEILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 127 ~aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
..+|+-|..+||+++.+.++++.. ..++...++||...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHC
Confidence 688999999999999999998532 34688889998863
No 115
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.69 E-value=65 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhC-CCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 124 ETVSEILGYLRNL-SLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 124 e~i~aklefLksL-G~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
..+..+|+.|..+ ||+++++..++... ...|...+++|.+.
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~--------ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDC--------NGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 3456788889977 99999999998864 34577788888753
No 116
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.57 E-value=58 Score=23.42 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|.++||+++...+++.+.= ..++...++||.+.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~-------n~n~e~A~ewL~~h 68 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTS-------NAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHc-------CCCHHHHHHHHHhC
Confidence 577888899999999999987531 13688889999863
No 117
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.19 E-value=60 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 128 EILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 128 aklefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.+|+-|..+||+++...++++.. ..++...++||.+.
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~ 67 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 56788889999999999999864 23577889999863
No 118
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=24.09 E-value=1e+02 Score=23.68 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=36.6
Q ss_pred hhhhhh-hhhhhhhcccChHHHHHHHHHHHHhhhCC--CChHHHHHHHHhhhhc
Q 028218 56 KKWAIY-STAQVQSITLNDEERKKWEACRQALSTFN--FSTEEEDKILGKAFGH 106 (212)
Q Consensus 56 ~~~~~~-~~~~~~~~~~~~~~~~~we~~v~~L~~LG--fspe~v~~il~rA~gl 106 (212)
|.|+++ .-+++ |+++=+..|++...+|-..| ++-.....|+.-..+|
T Consensus 16 ke~k~~~aR~k~----LP~dY~~ay~~i~~Yl~~~~~~~~g~~~~~il~~lldL 65 (113)
T 2hh6_A 16 REWKAMEARAKA----LPKEYHHAYKAIQKYMWTSGGPTDWQDTKRIFGGILDL 65 (113)
T ss_dssp HHHHHHHHHHHH----SCHHHHHHHHHHHHHHSSTTSBCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHccCCCCchHHHHHHHHHHHH
Confidence 789888 34555 99999999999999996555 8877777777655544
No 119
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.04 E-value=2.1e+02 Score=21.84 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=37.4
Q ss_pred HHHHhhhCCCChHHHHHHHHhhhhccccchhhhhhhhcCCChhhH--HHHHHHHHhCCCCHHHHHHHHhh
Q 028218 82 CRQALSTFNFSTEEEDKILGKAFGHIHSAYWSEERKRETPELETV--SEILGYLRNLSLSDDDIRKLLKK 149 (212)
Q Consensus 82 ~v~~L~~LGfspe~v~~il~rA~gl~~S~~fr~a~~~~v~s~e~i--~aklefLksLG~Sd~eI~k~vkK 149 (212)
.-++-+.+|+++..++-- .+. |++..+ -+..--.-..+++.+ -..|..|+.+|+|=++|..++..
T Consensus 19 I~evA~~~gvs~~tLR~Y-e~~-Gll~p~-~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYY-DKQ-GLFPFL-QRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHTTCCHHHHHHH-HHT-TCCTTC-EECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH-HHC-CCCCCC-cCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 344557889999988654 332 442100 000000001223333 35677889999999999999983
No 120
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=23.94 E-value=77 Score=21.00 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhh
Q 028218 78 KWEACRQALSTFNFSTEEEDKILGKA 103 (212)
Q Consensus 78 ~we~~v~~L~~LGfspe~v~~il~rA 103 (212)
+.|+.+..|-+.||+-+++.+.+..|
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45888999999999999998887776
No 121
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.57 E-value=64 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCHHHHHHHHhhcCceeecCccchhhhhhhhhhhc
Q 028218 129 ILGYLRNLSLSDDDIRKLLKKFPEVLGCDIEHELRNNVQILGKD 172 (212)
Q Consensus 129 klefLksLG~Sd~eI~k~vkK~P~ILg~SVEe~LkpkveFL~~~ 172 (212)
.|+-|.++||+++...+++...- ..++...++||...
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~-------n~~~e~A~~wL~~h 48 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATG-------RKTAEEALAWLHDH 48 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHT-------SCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-------CCCHHHHHHHHHhC
Confidence 56788889999999999988431 12588899999863
No 122
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=22.76 E-value=86 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.401 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhcCc
Q 028218 126 VSEILGYLRNLSLSDDDIRKLLKKFPE 152 (212)
Q Consensus 126 i~aklefLksLG~Sd~eI~k~vkK~P~ 152 (212)
+..--+|.+.||+|+.+|..+-..+|.
T Consensus 20 ~~~wK~laR~LGlse~~Id~I~~d~~~ 46 (115)
T 3ezq_A 20 LSQVKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHcCCC
Confidence 456667888999999999999999996
No 123
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=22.56 E-value=53 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.8
Q ss_pred HHHHHHhCCCCHHHHHHHHhhcCce
Q 028218 129 ILGYLRNLSLSDDDIRKLLKKFPEV 153 (212)
Q Consensus 129 klefLksLG~Sd~eI~k~vkK~P~I 153 (212)
--+|.+.||+|+.+|..+-..+|.-
T Consensus 28 WK~~aRkLGLse~~Id~Ie~~~~r~ 52 (112)
T 1ich_A 28 WKEFVKRLGLSDHEIDRLELQNGRC 52 (112)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCCSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 3467789999999999999899854
No 124
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=22.07 E-value=2e+02 Score=26.18 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=30.4
Q ss_pred cccchhhhhh-hhcCCChhhHHHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 107 IHSAYWSEER-KRETPELETVSEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 107 ~~S~~fr~a~-~~~v~s~e~i~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
++|.|-+-.. ...+-...++-.-++-|..-|||++||.+++..+
T Consensus 317 iGsDfDG~~~~P~gl~dvs~~p~L~~~L~~rG~se~di~ki~g~N 361 (400)
T 3id7_A 317 IGGDYDGTPFTPDGLGDVSGYPNLIAELLDRGWSQSDLAKLTWKN 361 (400)
T ss_dssp ECCCBTTCSCCCBTCSSTTCHHHHHHHHHHTTCCHHHHHHHHTHH
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCHHHHHHHHHHh
Confidence 6777654321 1222355667777888888899999999997754
No 125
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=21.96 E-value=1.5e+02 Score=21.93 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=13.0
Q ss_pred HHHHHHH-hCCCCHHHHHHHHh
Q 028218 128 EILGYLR-NLSLSDDDIRKLLK 148 (212)
Q Consensus 128 aklefLk-sLG~Sd~eI~k~vk 148 (212)
.+|..++ ..|++..|+++.+.
T Consensus 43 ~~L~~~R~~~glTQ~eLA~~lG 64 (120)
T 2o38_A 43 YALNAVIDRARLSQAAAAARLG 64 (120)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHC
Confidence 4444444 66777777777654
No 126
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=21.55 E-value=53 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=28.1
Q ss_pred hhhhhhcccChHHHHHHHHHHHHh-hhCCCChHHH
Q 028218 63 TAQVQSITLNDEERKKWEACRQAL-STFNFSTEEE 96 (212)
Q Consensus 63 ~~~~~~~~~~~~~~~~we~~v~~L-~~LGfspe~v 96 (212)
..+.+..++++|+++-.|=++++| +.+++++++.
T Consensus 14 ~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 14 HDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred HHhcccCCcCHhHHHHHHHHHHHHHHHcCCCcccc
Confidence 345555689999999999999999 7999988763
No 127
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.08 E-value=1.2e+02 Score=22.35 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=42.5
Q ss_pred HhhhCCCChHHHHHHHHhhh--hc----cccchhhhhhhhcC------CChhhHHHHHHHHHhCCCCHHHHHHHHhhc
Q 028218 85 ALSTFNFSTEEEDKILGKAF--GH----IHSAYWSEERKRET------PELETVSEILGYLRNLSLSDDDIRKLLKKF 150 (212)
Q Consensus 85 ~L~~LGfspe~v~~il~rA~--gl----~~S~~fr~a~~~~v------~s~e~i~aklefLksLG~Sd~eI~k~vkK~ 150 (212)
.-+.+|+|...+++++.+.. |+ .+.++|=....... .....+..-.+.+...|++++++..++.+.
T Consensus 43 La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~~~~le~~~~~~~~~g~~~~ei~~l~~~~ 120 (125)
T 3neu_A 43 MGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAIELLIKR 120 (125)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEEecCchhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33789999999999998854 34 45555522211000 011234555666678999999999998764
No 128
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=20.07 E-value=2.3e+02 Score=26.59 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=21.0
Q ss_pred hhhhhhhhhcccChHHHHHHHHHHHHhhh----CCCChHHHHHH
Q 028218 60 IYSTAQVQSITLNDEERKKWEACRQALST----FNFSTEEEDKI 99 (212)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~we~~v~~L~~----LGfspe~v~~i 99 (212)
.+|++|..++.=++.-.+.-|++...|.. .||+++.+-+|
T Consensus 175 ~Ls~~qVVaIAsn~GGkQALeaV~~llpvl~~~~~Ls~aqVVaI 218 (463)
T 4hpz_A 175 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 218 (463)
T ss_dssp CCCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCHHHHHHHhhcCchHHHHHHHHHHHHHhhccccCCHHHHHHH
Confidence 34566666555555555555555544422 35666666444
Done!