Query 028219
Match_columns 212
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01223 Pmev_kin_anim phosph 56.0 5.8 0.00013 34.6 1.1 72 71-161 55-135 (182)
2 PRK05089 cytochrome C oxidase 27.9 1.9E+02 0.0042 25.4 6.1 60 13-79 19-81 (188)
3 PF11015 DUF2853: Protein of u 27.8 15 0.00032 29.6 -0.8 42 126-167 39-80 (102)
4 PF06204 CBM_X: Putative carbo 26.3 42 0.00091 24.5 1.5 20 60-79 33-55 (66)
5 COG3934 Endo-beta-mannanase [C 22.7 41 0.00089 34.0 1.1 37 131-167 127-170 (587)
6 COG0203 RplQ Ribosomal protein 21.7 54 0.0012 27.0 1.4 28 80-107 74-101 (116)
7 PF07172 GRP: Glycine rich pro 19.3 1.1E+02 0.0023 23.9 2.6 13 10-22 4-16 (95)
8 PTZ00128 cytochrome c oxidase 19.1 3.5E+02 0.0076 24.6 6.1 59 14-78 63-124 (232)
9 PF07210 DUF1416: Protein of u 18.3 52 0.0011 25.8 0.6 20 97-118 22-41 (85)
10 PF08636 Pkr1: ER protein Pkr1 15.7 1.2E+02 0.0025 23.2 1.9 23 8-30 26-48 (75)
No 1
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=55.97 E-value=5.8 Score=34.61 Aligned_cols=72 Identities=22% Similarity=0.454 Sum_probs=50.6
Q ss_pred CcccchhH-HHHHHHHHHHhhcCCCCCCCcceEEecCCCCCCccCCCCceeeCCCCCCCChHHHhhhhhh-HHH------
Q 028219 71 DAIYSQWQ-SRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPT-WLN------ 142 (212)
Q Consensus 71 ~s~Y~~WQ-~rimy~sykk~~~~pGs~mG~FTRILH~g~~D~LMdeIPT~vvdPL~~~~D~dDL~kiAP~-W~~------ 142 (212)
.++|-. | -+-|+.|+..+++. ++|.|.|..+. ..| .|.++| +|+|+-+|. |+.
T Consensus 55 d~~YKE-~~R~~mi~w~e~~r~~---dp~~F~r~~~~-~~~-----~~v~iI---------sD~Rr~~dv~~f~~~~g~~ 115 (182)
T TIGR01223 55 TSTYKE-AFRKDMIRWGEEKRQA---DPGFFCRKIVE-GIS-----QPIWLV---------SDTRRVSDIQWFREAYGAV 115 (182)
T ss_pred Ccccch-hhhHHHHHHHHHHHhh---CccHHHHHHHh-ccC-----CCEEEE---------eCCCcccHHHHHHHHcCCc
Confidence 358888 8 88999998888752 35899998885 333 366666 344444442 333
Q ss_pred -HHHhhccChhhhhccchHH
Q 028219 143 -VSLRMKDDHETDKQFGWVL 161 (212)
Q Consensus 143 -~t~~vr~D~ea~~~~GWV~ 161 (212)
++.+|++++++.++.||+-
T Consensus 116 ~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 116 TQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred eEEEEEecCHHHHHHHHHhc
Confidence 3488999999999999763
No 2
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=27.91 E-value=1.9e+02 Score=25.35 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHH---HHHhhhhhhcccccccCCCCcccccCccCCCCCCCCeeEEEEeecCcccchhHH
Q 028219 13 LLVLLALGFFFAT---YNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQS 79 (212)
Q Consensus 13 ~~~l~~~~~~~~t---yn~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~Htv~Ta~~s~Y~~WQ~ 79 (212)
++++..+||.|+. |+++-.+--.. |..... -..........|.+.+-|.||-++-+.|+=
T Consensus 19 ~~~~~Mfgf~fA~VPLY~~fC~~TG~~-----G~t~~~--~~~~~~~~~~~R~I~V~F~a~~~~~lpW~F 81 (188)
T PRK05089 19 LVVVGMFGFGFALVPLYDVFCEVTGIN-----GTTQAA--RVEAASQVDLSRTITVEFDANVNGGLPWEF 81 (188)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhCCC-----ceeccc--cccccCcccCCcEEEEEEeccCCCCCCceE
Confidence 3444566777776 88877653211 111110 111223456788999999999999999983
No 3
>PF11015 DUF2853: Protein of unknown function (DUF2853); InterPro: IPR021274 This bacterial family of proteins has no known function. ; PDB: 2PYQ_B.
Probab=27.77 E-value=15 Score=29.61 Aligned_cols=42 Identities=26% Similarity=0.250 Sum_probs=32.1
Q ss_pred CCCChHHHhhhhhhHHHHHHhhccChhhhhccchHHHHHHHH
Q 028219 126 EGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYA 167 (212)
Q Consensus 126 ~~~D~dDL~kiAP~W~~~t~~vr~D~ea~~~~GWV~EMYgYs 167 (212)
..-|+++|++|-..|+-+-+-+.++++++.+..=|.|+||=|
T Consensus 39 s~Sd~~ELe~Vk~nfl~KKLGl~d~~~ld~aI~~V~e~mg~s 80 (102)
T PF11015_consen 39 SCSDPKELERVKENFLIKKLGLSDDPELDAAINKVCEKMGKS 80 (102)
T ss_dssp -TT-HHHHHHHHHHCCCCCT---SSHHHHHHHHHHHHHH-TT
T ss_pred ccCCHHHHHHHHHhHHHHHcCCCCcHHHHHHHHHHHHHhccc
Confidence 344779999999999999999988899999999999999843
No 4
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=26.30 E-value=42 Score=24.48 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCeeEEEEeecCcccc---hhHH
Q 028219 60 GMRFHVALTATDAIYS---QWQS 79 (212)
Q Consensus 60 ~~~~Htv~Ta~~s~Y~---~WQ~ 79 (212)
...|++++|.+|+.|. +|+.
T Consensus 33 Ng~y~~mvt~~G~GySw~~~~~~ 55 (66)
T PF06204_consen 33 NGSYGVMVTNSGSGYSWAKNSRD 55 (66)
T ss_dssp SSSEEEEEETTSBEEEEES-TTT
T ss_pred CCcEEEEEcCCCceeecccccCc
Confidence 4479999999999998 7764
No 5
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=22.71 E-value=41 Score=34.03 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=24.3
Q ss_pred HHHhh---hhhhHHH--HHHh--hccChhhhhccchHHHHHHHH
Q 028219 131 YLLEE---ISPTWLN--VSLR--MKDDHETDKQFGWVLEMYAYA 167 (212)
Q Consensus 131 dDL~k---iAP~W~~--~t~~--vr~D~ea~~~~GWV~EMYgYs 167 (212)
+||.+ .-|+=+. ++.+ +|.+......+-|++|||+|-
T Consensus 127 edlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yi 170 (587)
T COG3934 127 EDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYI 170 (587)
T ss_pred HHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHh
Confidence 66665 3343332 2333 666666677889999999995
No 6
>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=21.72 E-value=54 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhcCCCCCCCcceEEecCC
Q 028219 80 RIMYYWYKKVKDMPRSDMGKFTRILHSG 107 (212)
Q Consensus 80 rimy~sykk~~~~pGs~mG~FTRILH~g 107 (212)
.++=.-|......=....||.||||.+|
T Consensus 74 ~~v~kLF~~iapry~~R~GGYtRIlK~g 101 (116)
T COG0203 74 DAVKKLFDEIAPRYAERNGGYTRILKLG 101 (116)
T ss_pred HHHHHHHHHhChhhcCCCCCeeEEEecC
Confidence 3444555555311125569999999996
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=19.28 E-value=1.1e+02 Score=23.86 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 028219 10 SSFLLVLLALGFF 22 (212)
Q Consensus 10 ~~~~~~l~~~~~~ 22 (212)
+.||||.+.|.++
T Consensus 4 K~~llL~l~LA~l 16 (95)
T PF07172_consen 4 KAFLLLGLLLAAL 16 (95)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444433
No 8
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=19.09 E-value=3.5e+02 Score=24.59 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHH---HHHhhhhhhcccccccCCCCcccccCccCCCCCCCCeeEEEEeecCcccchhH
Q 028219 14 LVLLALGFFFAT---YNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQ 78 (212)
Q Consensus 14 ~~l~~~~~~~~t---yn~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~Htv~Ta~~s~Y~~WQ 78 (212)
+++..+||.||. |+++--+--.. |..... .-..........|.|.+-|.|+=++-..|+
T Consensus 63 ~~v~Mfgf~fA~VPLY~~fC~~TG~~-----Gtt~~~-~~~~~~~~~~~~R~I~V~F~a~v~~~lpW~ 124 (232)
T PTZ00128 63 LYIAMFGCSFAFVPLYRLFCQSTGYG-----GDADKK-DYSMKKKYPVPKRLIKIRFLADTGSTMPWE 124 (232)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCC-----cccccc-ccccccccccCceEEEEEEeccCCCCCCce
Confidence 344456666765 88776542211 110010 001111234567899999999999999998
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=18.31 E-value=52 Score=25.77 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=16.7
Q ss_pred CCcceEEecCCCCCCccCCCCc
Q 028219 97 MGKFTRILHSGKADNLMDEIPS 118 (212)
Q Consensus 97 mG~FTRILH~g~~D~LMdeIPT 118 (212)
.|+|-|||.+ .+|++.|+||
T Consensus 22 ~gAyVRLLD~--sgEFtaEvvt 41 (85)
T PF07210_consen 22 GGAYVRLLDS--SGEFTAEVVT 41 (85)
T ss_pred CCeEEEEEcC--CCCeEEEEEe
Confidence 3899999998 5678888876
No 10
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=15.69 E-value=1.2e+02 Score=23.17 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=16.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh
Q 028219 8 GVSSFLLVLLALGFFFATYNLLT 30 (212)
Q Consensus 8 ~~~~~~~~l~~~~~~~~tyn~~~ 30 (212)
.+++..|++.-++..|+|||+=.
T Consensus 26 n~sF~~L~~~l~~Ll~~t~niHf 48 (75)
T PF08636_consen 26 NVSFAALFLVLLALLFLTYNIHF 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHccCHHH
Confidence 34566677777788889998633
Done!