Query 028219
Match_columns 212
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9a_X LAK160-P12; cationic, p 24.5 21 0.0007 21.3 0.5 17 133-149 7-23 (26)
2 2pyq_A Uncharacterized protein 23.7 14 0.00048 29.1 -0.4 39 127-165 50-88 (114)
3 2lk9_A Bone marrow stromal ant 22.1 40 0.0014 21.6 1.5 23 6-28 7-29 (35)
4 2zjr_K 50S ribosomal protein L 14.7 65 0.0022 25.1 1.5 14 95-108 89-102 (116)
5 3r8s_N 50S ribosomal protein L 13.8 54 0.0019 25.7 0.9 13 95-107 89-101 (120)
6 1gd8_A 50S ribosomal protein L 12.8 61 0.0021 25.3 0.9 13 95-107 89-101 (118)
7 2dnm_A SRP46 splicing factor; 12.4 2.1E+02 0.0073 19.3 3.6 46 108-153 5-51 (103)
8 2edd_A Netrin receptor DCC; tu 11.9 1.8E+02 0.0061 20.7 3.1 39 40-78 2-40 (123)
9 1rrp_B Nuclear pore complex pr 11.8 1.6E+02 0.0055 22.5 3.0 32 44-75 2-33 (134)
10 2cqm_A Ribosomal protein L17 i 11.6 74 0.0025 25.0 1.0 14 95-108 79-92 (122)
No 1
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=24.46 E-value=21 Score=21.29 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=13.8
Q ss_pred HhhhhhhHHHHHHhhcc
Q 028219 133 LEEISPTWLNVSLRMKD 149 (212)
Q Consensus 133 L~kiAP~W~~~t~~vr~ 149 (212)
|.++||+|-....+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 56899999988877764
No 2
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=23.74 E-value=14 Score=29.12 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=35.5
Q ss_pred CCChHHHhhhhhhHHHHHHhhccChhhhhccchHHHHHH
Q 028219 127 GLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYA 165 (212)
Q Consensus 127 ~~D~dDL~kiAP~W~~~t~~vr~D~ea~~~~GWV~EMYg 165 (212)
.-|+++|++|-..|+-+-+-+.++++++.+-.=|.|+||
T Consensus 50 ~SD~~ELerVk~nfl~KKLGl~d~~~ld~aI~~V~e~mg 88 (114)
T 2pyq_A 50 GSDTAELETIKKNFLMKKLGLADSESLMGGIQSVIETYG 88 (114)
T ss_dssp TTCHHHHHHHHHHTTTTTSCCCSSHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHhHHHHHcCCCCcHhHHHHHHHHHHHHh
Confidence 346799999999999999999999999999999999995
No 3
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=22.09 E-value=40 Score=21.56 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=16.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 028219 6 NLGVSSFLLVLLALGFFFATYNL 28 (212)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~tyn~ 28 (212)
.|-+-..+|+.++||+.++.|-.
T Consensus 7 lg~Gvl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 7 LGIGILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ecccHHHHHHHHHhcchheEEee
Confidence 35566677788888888887743
No 4
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=14.67 E-value=65 Score=25.11 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=11.5
Q ss_pred CCCCcceEEecCCC
Q 028219 95 SDMGKFTRILHSGK 108 (212)
Q Consensus 95 s~mG~FTRILH~g~ 108 (212)
...||+|||+-+|.
T Consensus 89 ~R~GGYTRI~K~~~ 102 (116)
T 2zjr_K 89 ERPGGYTRILRVGT 102 (116)
T ss_dssp TSCSCCCEEEECCC
T ss_pred CCCCCeeEEEECCC
Confidence 55699999999863
No 5
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=13.84 E-value=54 Score=25.74 Aligned_cols=13 Identities=54% Similarity=0.879 Sum_probs=10.9
Q ss_pred CCCCcceEEecCC
Q 028219 95 SDMGKFTRILHSG 107 (212)
Q Consensus 95 s~mG~FTRILH~g 107 (212)
...||+|||+..|
T Consensus 89 ~R~GGYTRI~K~~ 101 (120)
T 3r8s_N 89 SRAGGYTRILKCG 101 (120)
T ss_dssp TCCSCCEEEEEEE
T ss_pred CCCCCeEEEEECC
Confidence 5569999999985
No 6
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=12.78 E-value=61 Score=25.29 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.1
Q ss_pred CCCCcceEEecCC
Q 028219 95 SDMGKFTRILHSG 107 (212)
Q Consensus 95 s~mG~FTRILH~g 107 (212)
...||+|||+-+|
T Consensus 89 ~R~GGYTRI~K~~ 101 (118)
T 1gd8_A 89 DRQGGYTRVLKLA 101 (118)
T ss_dssp SCCSCCEEEEEEE
T ss_pred CCCCCeEEEEECC
Confidence 5569999999987
No 7
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=12.45 E-value=2.1e+02 Score=19.28 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCCCccCCCCceeeCCCCCCCChHHHhhhhhhHHHH-HHhhccChhh
Q 028219 108 KADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNV-SLRMKDDHET 153 (212)
Q Consensus 108 ~~D~LMdeIPT~vvdPL~~~~D~dDL~kiAP~W~~~-t~~vr~D~ea 153 (212)
.+..-.+.--|+.|-.||..++.+||+++--.+=.+ ...+..|+..
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~ 51 (103)
T 2dnm_A 5 SSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT 51 (103)
T ss_dssp CCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC
Confidence 344444556688889999999999998765443221 2344455443
No 8
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.95 E-value=1.8e+02 Score=20.73 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=32.5
Q ss_pred ccCCCCcccccCccCCCCCCCCeeEEEEeecCcccchhH
Q 028219 40 EIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQ 78 (212)
Q Consensus 40 ~~~~~~~~~~m~~~~~~~~~~~~~Htv~Ta~~s~Y~~WQ 78 (212)
+++..+|++..+.....+.++..+++.-.+..+.--.|+
T Consensus 2 ~~~~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~ 40 (123)
T 2edd_A 2 SSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWA 40 (123)
T ss_dssp CSCCSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEE
T ss_pred CCccCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEec
Confidence 456678888888878888889999998888888888997
No 9
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=11.82 E-value=1.6e+02 Score=22.48 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCcccccCccCCCCCCCCeeEEEEeecCcccc
Q 028219 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS 75 (212)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~Htv~Ta~~s~Y~ 75 (212)
+.||+++|......+..-.=.++|+..|..|-
T Consensus 2 ~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~ 33 (134)
T 1rrp_B 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFR 33 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEE
T ss_pred cccceECCceEeecCCCcCeEEEEEEEEEEEE
Confidence 56999999877655556667899999998885
No 10
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=11.63 E-value=74 Score=24.96 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.0
Q ss_pred CCCCcceEEecCCC
Q 028219 95 SDMGKFTRILHSGK 108 (212)
Q Consensus 95 s~mG~FTRILH~g~ 108 (212)
...||+|||+..|.
T Consensus 79 ~R~GGYTRI~K~~~ 92 (122)
T 2cqm_A 79 DQTGGYTRMLQIPN 92 (122)
T ss_dssp HSCSCCEEEEEECC
T ss_pred CCCCCeeEEEECCC
Confidence 34589999999864
Done!