Query 028219
Match_columns 212
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cpda1 d.58.7.1 (A:223-308) A 20.2 39 0.0029 21.3 3.1 28 110-137 2-29 (86)
2 d1k1ga_ d.51.1.1 (A:) RNA spli 14.4 1.2E+02 0.0088 21.4 4.9 13 59-71 66-78 (122)
3 d1gd8a_ d.188.1.1 (A:) Prokary 14.2 25 0.0018 25.1 0.9 13 95-107 76-88 (105)
4 d1rrpb_ b.55.1.3 (B:) Nuclear 10.8 86 0.0063 21.9 3.0 32 44-75 2-33 (134)
5 d3etja1 b.84.2.1 (A:277-355) N 10.0 7.5 0.00054 26.6 -3.1 22 83-106 26-47 (79)
6 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 9.6 1E+02 0.0076 19.6 2.9 44 111-154 2-46 (93)
7 d2pyqa1 a.279.1.1 (A:1-113) Un 9.1 27 0.002 25.6 -0.4 39 127-165 49-87 (113)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 8.9 1.1E+02 0.0078 18.2 2.4 13 14-26 22-34 (37)
9 d2zjrk1 d.188.1.1 (K:3-115) Pr 8.8 63 0.0046 23.1 1.5 13 95-107 87-99 (113)
10 d2cq0a1 d.58.7.1 (A:231-320) E 8.5 1.1E+02 0.0081 19.2 2.6 46 115-160 7-55 (90)
No 1
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.23 E-value=39 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCccCCCCceeeCCCCCCCChHHHhhhh
Q 028219 110 DNLMDEIPSFVVDPLPEGLDRYLLEEIS 137 (212)
Q Consensus 110 D~LMdeIPT~vvdPL~~~~D~dDL~kiA 137 (212)
++-|..+=|.-|-.||..++.+||+++-
T Consensus 2 ~d~~~~~k~l~V~nLp~~~te~~l~~~F 29 (86)
T d2cpda1 2 EDTMSSVKILYVRNLMLSTSEEMIEKEF 29 (86)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHH
T ss_pred cccccCCCEEEEcCCCCCCCHHHHHHhh
Confidence 4567777788899999999999998764
No 2
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.39 E-value=1.2e+02 Score=21.41 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=10.6
Q ss_pred CCCeeEEEEeecC
Q 028219 59 SGMRFHVALTATD 71 (212)
Q Consensus 59 ~~~~~Htv~Ta~~ 71 (212)
....+|+.+|+++
T Consensus 66 ~~epLHv~I~a~~ 78 (122)
T d1k1ga_ 66 EDEPLHALVTANT 78 (122)
T ss_dssp SSCCEEEEEEESS
T ss_pred CCCCceEEEecCC
Confidence 4557999999987
No 3
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}
Probab=14.17 E-value=25 Score=25.05 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.4
Q ss_pred CCCCcceEEecCC
Q 028219 95 SDMGKFTRILHSG 107 (212)
Q Consensus 95 s~mG~FTRILH~g 107 (212)
+..||+|||+..|
T Consensus 76 ~R~GGYTRI~kl~ 88 (105)
T d1gd8a_ 76 DRQGGYTRVLKLA 88 (105)
T ss_dssp SCCSCCEEEEEEE
T ss_pred cCCCCeEEEEecC
Confidence 4569999999864
No 4
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.76 E-value=86 Score=21.87 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCcccccCccCCCCCCCCeeEEEEeecCcccc
Q 028219 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS 75 (212)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~Htv~Ta~~s~Y~ 75 (212)
+.|++++|.+..-.+..-.=-++|+..|..|.
T Consensus 2 f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~ 33 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFR 33 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEE
T ss_pred ccCcccCCCccceecCccCcEEEEEEeeEEEE
Confidence 57999999876633333335788888888864
No 5
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}
Probab=10.01 E-value=7.5 Score=26.65 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=16.5
Q ss_pred HHHHHHhhcCCCCCCCcceEEecC
Q 028219 83 YYWYKKVKDMPRSDMGKFTRILHS 106 (212)
Q Consensus 83 y~sykk~~~~pGs~mG~FTRILH~ 106 (212)
+|||.|. ..||-.||++| |+..
T Consensus 26 ~H~YGK~-~RpgRKmGHit-l~~~ 47 (79)
T d3etja1 26 LHWYDKE-VRPGRKVGHLN-LTDS 47 (79)
T ss_dssp EEECCCC-CCTTCEEEEEE-EECS
T ss_pred EEecCCC-CCCCCcEEEEE-eecC
Confidence 5678774 57999999999 5443
No 6
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.57 E-value=1e+02 Score=19.61 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=29.4
Q ss_pred CccCCCCceeeCCCCCCCChHHHhhhhhhHHHH-HHhhccChhhh
Q 028219 111 NLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNV-SLRMKDDHETD 154 (212)
Q Consensus 111 ~LMdeIPT~vvdPL~~~~D~dDL~kiAP~W~~~-t~~vr~D~ea~ 154 (212)
.++++--|.-|-.||..++.++|+++--..=.+ +..+-.|+...
T Consensus 2 ~~~~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~ 46 (93)
T d1h2vz_ 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK 46 (93)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred CccCCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccc
Confidence 455666688889999999999999885544322 33444555544
No 7
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=9.06 E-value=27 Score=25.57 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=34.6
Q ss_pred CCChHHHhhhhhhHHHHHHhhccChhhhhccchHHHHHH
Q 028219 127 GLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYA 165 (212)
Q Consensus 127 ~~D~dDL~kiAP~W~~~t~~vr~D~ea~~~~GWV~EMYg 165 (212)
.-|+++|++|-..|+-+-+-+.+.|+++.+-.=|.|.||
T Consensus 49 ~Sd~~ELe~Vk~nfl~KKLGl~D~~~ld~aI~~V~e~~g 87 (113)
T d2pyqa1 49 GSDTAELETIKKNFLMKKLGLADSESLMGGIQSVIETYG 87 (113)
T ss_dssp TTCHHHHHHHHHHTTTTTSCCCSSHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHhHHHHHhCCCCcHHHHHHHHHHHHHHc
Confidence 346699999999999999999888999999888999986
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.95 E-value=1.1e+02 Score=18.16 Aligned_cols=13 Identities=38% Similarity=0.989 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 028219 14 LVLLALGFFFATY 26 (212)
Q Consensus 14 ~~l~~~~~~~~ty 26 (212)
|++.++++.|..|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445666777666
No 9
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.79 E-value=63 Score=23.08 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=10.7
Q ss_pred CCCCcceEEecCC
Q 028219 95 SDMGKFTRILHSG 107 (212)
Q Consensus 95 s~mG~FTRILH~g 107 (212)
+..||+|||+-.|
T Consensus 87 ~R~GGYTRI~kl~ 99 (113)
T d2zjrk1 87 ERPGGYTRILRVG 99 (113)
T ss_dssp TSCSCCCEEEECC
T ss_pred CCCCCeEEEEECC
Confidence 4568999999886
No 10
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.51 E-value=1.1e+02 Score=19.24 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCceeeCCCCCCCChHHHhhhhhhHHHH-HHhhccChhhh--hccchH
Q 028219 115 EIPSFVVDPLPEGLDRYLLEEISPTWLNV-SLRMKDDHETD--KQFGWV 160 (212)
Q Consensus 115 eIPT~vvdPL~~~~D~dDL~kiAP~W~~~-t~~vr~D~ea~--~~~GWV 160 (212)
.--|..|-.||..++.++|+++=..+=.+ +..+-.|+... +.+++|
T Consensus 7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV 55 (90)
T d2cq0a1 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 55 (90)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeE
Confidence 33578899999999999999886655333 33444555433 334444
Done!