BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028220
         (212 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DEP|C Chain C, Structure Of The Il-1b Signaling Complex
 pdb|4DEP|F Chain F, Structure Of The Il-1b Signaling Complex
          Length = 349

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 103 DGKNPDEFTRDV-INSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 161
           DGK PD+ T DV IN  I+ ++          S++K   ++L++++     + +   A +
Sbjct: 267 DGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKA 326

Query: 162 AAVSNAILSEAHHVE 176
           A V   + +  + VE
Sbjct: 327 AKVKQKVPAPRYTVE 341


>pdb|2I2O|A Chain A, Crystal Structure Of An Eif4g-Like Protein From Danio
           Rerio
 pdb|2I2O|B Chain B, Crystal Structure Of An Eif4g-Like Protein From Danio
           Rerio
          Length = 224

 Score = 27.3 bits (59), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 47  LGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDG 104
           + L+H +Y  +     +  L   + ++ LV +L  +    EK N+Q+  E+ NL+ DG
Sbjct: 125 VALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKXNVQLXDELFNLLRDG 182


>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
 pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
          Length = 292

 Score = 26.9 bits (58), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 2   DGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINS---VQKTLGLLHQ-LYLTV 57
           DG   G  A GG+G +S  AN    + AD  +  LN    +   +Q  L  LH+ L+L  
Sbjct: 188 DGTALGYMAHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPLHRALFLET 247

Query: 58  SSFNAASQLPLLQRLNSLVSEL 79
              N A     LQRL  +  +L
Sbjct: 248 ---NPAGAKYALQRLGRMRGDL 266


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,859,746
Number of Sequences: 62578
Number of extensions: 212150
Number of successful extensions: 535
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 19
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)