BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028220
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b
OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1
Length = 189
Score = 245 bits (626), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 136/156 (87%), Gaps = 2/156 (1%)
Query: 12 GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
G NG + Q ND +T ADD K+NL+QVINS++KTLG+LHQL+LTV+SF ASQL LL
Sbjct: 13 GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 72
Query: 70 QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 73 QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132
Query: 130 DAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
DAFK LRKH+L+ELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 133 DAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168
>sp|Q9FHZ2|MD10A_ARATH Mediator of RNA polymerase II transcription subunit 10a
OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1
Length = 186
Score = 216 bits (551), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 124/151 (82%), Gaps = 3/151 (1%)
Query: 14 NGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLN 73
NG + + N TV DD + LNQ+INS QK L LLHQL LTVSSF ASQL LLQRLN
Sbjct: 15 NGSIKTEINAIATV--DDSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLN 72
Query: 74 SLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVIN-SCIAKNQVTKGKTDAF 132
SLV ELDNM KLS+KCNIQVP EVLNLIDDGKNPDEFT+DV+N +CIAKNQVTKGK+DAF
Sbjct: 73 SLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAF 132
Query: 133 KSLRKHLLDELEQTFPDEVEAYREIRANSAA 163
K LRKHLL+ELEQ FPDEV+ YR+IRA+ AA
Sbjct: 133 KGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163
>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes
aegypti GN=MED10 PE=3 SV=1
Length = 130
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 69/112 (61%)
Query: 50 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDE 109
+ Q+ + VS F Q L Q++ SLV+ L + KL + ++ VP EV + ID G+NP
Sbjct: 19 VRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPLEVFDYIDQGRNPQL 78
Query: 110 FTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 161
+T+D I+ + KN+ KGK D+++ + +L+ EL++TFP E+ Y+ IR +
Sbjct: 79 YTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYKAIRGDE 130
>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles
gambiae GN=MED10 PE=3 SV=2
Length = 130
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 50 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDE 109
+ Q+ + VS F Q L Q++ SLV+ L + KL + ++ VP EV + ID G+NP
Sbjct: 19 VRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPLEVFDYIDQGRNPQL 78
Query: 110 FTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 161
+T+D I+ + KN+ KGK D+++ + +L+ EL +TFP E+ Y+ IR +
Sbjct: 79 YTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYKAIRGDE 130
>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus
musculus GN=Med10 PE=1 SV=1
Length = 135
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ +I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
VP EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122
Query: 153 AYREIRANSAAVS 165
YR IR S
Sbjct: 123 KYRSIRGEDHPPS 135
>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo
abelii GN=MED10 PE=2 SV=1
Length = 135
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ +I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
VP EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122
Query: 153 AYREIRANSAAVS 165
YR IR S
Sbjct: 123 KYRSIRGEDHPPS 135
>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo
sapiens GN=MED10 PE=1 SV=1
Length = 135
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ +I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
VP EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122
Query: 153 AYREIRANSAAVS 165
YR IR S
Sbjct: 123 KYRSIRGEDHPPS 135
>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos
taurus GN=MED10 PE=2 SV=1
Length = 135
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ +I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
VP EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122
Query: 153 AYREIRANSAAVS 165
YR IR S
Sbjct: 123 KYRSIRGEDHPPS 135
>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
tropicalis GN=med10 PE=2 SV=1
Length = 135
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 50 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQVPTEVLNLIDDGKNPD 108
+ QL + VS F +SQ L Q+LN LV+ L ++ K ++ +I VP EV + ID G+NP
Sbjct: 19 IRQLGIIVSDFQPSSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQ 78
Query: 109 EFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
+T++ + +AKN+ KGK D K + L+ EL + FP+++ Y+ IR S
Sbjct: 79 LYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAIRGEDHPPS 135
>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
laevis GN=med10 PE=2 SV=1
Length = 135
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 41 NSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQVPTEVLN 99
+ ++K + + QL + VS F +SQ L Q+LN LV L ++ K ++ +I VP EV +
Sbjct: 10 DHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVRGLQDIDKCRQQLHDITVPLEVFD 69
Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRA 159
ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ Y+ +R
Sbjct: 70 YIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAVRG 129
Query: 160 NSAAVS 165
S
Sbjct: 130 EDHPPS 135
>sp|Q4R6W4|MED10_MACFA Mediator of RNA polymerase II transcription subunit 10 OS=Macaca
fascicularis GN=MED10 PE=2 SV=1
Length = 135
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ +I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
VP EV ID G+NP +T++ + +AKN+ KGK D K + L+ L + FP+++
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQGLSKVFPEDMA 122
Query: 153 AYREIRA 159
YR IR
Sbjct: 123 KYRSIRG 129
>sp|Q9GYU7|MED10_DROME Mediator of RNA polymerase II transcription subunit 10
OS=Drosophila melanogaster GN=MED10 PE=1 SV=1
Length = 133
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 50 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKCNIQVPTEVL-NLIDDGKNP 107
+ Q+ + VS F Q L Q++NSLV+ L + KL S+ ++ VP EV + ID KNP
Sbjct: 19 VRQIRIIVSDFQPQGQNVLNQKINSLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNP 78
Query: 108 DEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 161
+T+D + +AKN+ KGK + K + +LL EL +TFP+E+ YR R +S
Sbjct: 79 QLYTKDCVEKALAKNEEVKGKIEGLKKFKTNLLLELYKTFPNEMNNYRAYRKDS 132
>sp|Q0VIA1|MED10_DANRE Mediator of RNA polymerase II transcription subunit 10 OS=Danio
rerio GN=med10 PE=2 SV=1
Length = 134
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 50 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQVPTEVLNLIDDGKNPD 108
+ QL + VS F +SQ L Q+LN +++ L ++ K ++ +I VP EV ID G+NP
Sbjct: 19 IRQLGIIVSDFQPSSQTGLNQKLNFMITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQ 78
Query: 109 EFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 160
+T++ + +AKN+ KGK D + L+ EL + FP+E+ Y+ I +
Sbjct: 79 LYTKECLERALAKNEQVKGKIDTLTKFKSLLISELGKVFPEEMAKYKAIHGD 130
>sp|Q54GE5|MED10_DICDI Putative mediator of RNA polymerase II transcription subunit 10
OS=Dictyostelium discoideum GN=med10 PE=3 SV=1
Length = 219
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 39 VINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEV 97
++ +V++ + L + + V F SQ L +LN +++ + + N +++P E+
Sbjct: 54 LLQTVEELVEELRRSLIVVEEFQTPSQQLLFDKLNKIINLYEKIESNRHIVNDVEIPLEI 113
Query: 98 LNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYR 155
+ID KNPD + ++ + +C++ N+ TKGK ++ K+ +K L + ++F E Y+
Sbjct: 114 FRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIKNFKKELESHISESFASEYAEYK 171
>sp|P45966|MED10_CAEEL Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis elegans GN=mdt-10 PE=3 SV=1
Length = 173
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 57 VSSFNAASQLPLLQRLNSLVSELDNMVKLSEK-CNIQVPTEVLNLIDDGKNPDEFTRDVI 115
S+F Q L R+ +LV L ++ ++ + +VP ++L +DDGKNP +++ +
Sbjct: 65 ASNFQTKYQDALNGRIYTLVRGLQDLDRMKGTFSDKKVPLDLLPYLDDGKNPCLYSKHCM 124
Query: 116 NSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 160
+ KN+ GK + +K R HL+ E + PD V YR IR +
Sbjct: 125 EKTLEKNKAVNGKIEIYKKFRAHLMKEFSEEMPDLVMYYRSIRED 169
>sp|Q758M1|MED10_ASHGO Mediator of RNA polymerase II transcription subunit 10 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=NUT2 PE=3 SV=2
Length = 151
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 86 SEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQ 145
S+ N+ +P EVL I+DG+NPD +TR+ + + NQ + K A K LR L +++ +
Sbjct: 70 SQLRNMNIPLEVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKMHALKKLRDSLAEKIGE 129
Query: 146 TFPDEVEAYREI--RANSA 162
FPD V + I RAN +
Sbjct: 130 EFPDLVPQVQGIIERANGS 148
>sp|Q61Z20|MED10_CAEBR Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis briggsae GN=mdt-10 PE=3 SV=1
Length = 173
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 57 VSSFNAASQLPLLQRLNSLVSELDNMVKLSEK-CNIQVPTEVLNLIDDGKNPDEFTRDVI 115
S+F Q L R+ +L+ L ++ ++ + VP ++L +DDGKNP +++ +
Sbjct: 69 ASNFQTKYQDALNGRIYTLIRGLQDLDRMKGTFSDKNVPLDILPYLDDGKNPLLYSKHCM 128
Query: 116 NSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRA 159
+ KN+ GK + +K R HL+ E + PD V YR+ R
Sbjct: 129 EKTLEKNKAVNGKIEMYKKFRAHLIKEFSEEMPDFVIEYRKERG 172
>sp|Q6BWK1|MED10_DEBHA Mediator of RNA polymerase II transcription subunit 10
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=NUT2 PE=3 SV=1
Length = 147
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%)
Query: 64 SQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
S L + N ++S+L ++ +P +V++ I+DG+NPD +TR+ + N
Sbjct: 45 SHTALTHKTNQVISQLSSLTDSGFTHQYPIPVDVISYIEDGRNPDVYTREFVEVTAKSNA 104
Query: 124 VTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSA 162
KGK F+ LR L D+L + FP+ A +I+ +
Sbjct: 105 RLKGKMLGFQKLRDVLGDKLGKEFPELGSAIEDIKKRTT 143
>sp|Q06213|MED10_YEAST Mediator of RNA polymerase II transcription subunit 10
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NUT2 PE=1 SV=1
Length = 157
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 72 LNSLVSELDNMVKLSEKCN--------IQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
+ +L +D + KL+ + N + +P EV+ I+DG+NPD +TR+ + + NQ
Sbjct: 50 ITNLQRNVDRLYKLNVRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQ 109
Query: 124 VTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSN 166
+GK K LR L D++ FP+ E +I ++ + N
Sbjct: 110 YQRGKMHGLKQLRDSLADKIVDEFPELKEPVEDIIKRTSPIDN 152
>sp|A3LPQ8|MED10_PICST Mediator of RNA polymerase II transcription subunit 10
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=NUT2 PE=3 SV=2
Length = 146
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%)
Query: 64 SQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
S L + N ++S+L + +P +V++ I+DG+NPD +TR+ I N
Sbjct: 45 SHTALTHKTNQVISQLSGLTSSPFTHQFPIPVDVISYIEDGRNPDIYTREFIEVTAKSNA 104
Query: 124 VTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSA 162
KGK AF LR L ++L FP V++ +I+ +
Sbjct: 105 RLKGKMKAFARLRDVLGEKLGNEFPRLVDSIDDIKKRTT 143
>sp|Q6C5P0|MED10_YARLI Mediator of RNA polymerase II transcription subunit 10 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=NUT2 PE=3 SV=1
Length = 143
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 66/108 (61%), Gaps = 7/108 (6%)
Query: 41 NSVQKTLGLLHQLYLTV--SSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVL 98
N +++T+ L ++ L V ++ + ++ L++++++LV E + ++ KC+ Q+P +V+
Sbjct: 11 NQLRQTIETLVEISLLVHDTTGSQENKEGLIEQMDTLVKEFQRLKEI--KCDKQIPIDVI 68
Query: 99 NLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF---KSLRKHLLDEL 143
+ ID G+NPD +TR+ + + +NQ GK D + K +R+ D++
Sbjct: 69 DYIDQGRNPDVYTREFVELLLKQNQFIHGKMDIYTVSKGVRESTSDDI 116
>sp|Q4PDA7|MED10_USTMA Mediator of RNA polymerase II transcription subunit 10 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=NUT2 PE=3 SV=1
Length = 197
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLV---SELDNMVKLSEKCNIQVPTEVLN 99
V+ + LL+QL + + SQ + ++N + + LD + ++ +P +VL
Sbjct: 76 VRSVVDLLYQLAVCSADVQEGSQHLVANKVNECIQALAALDATKDELHRAHMMIPQDVLE 135
Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
++D GKNPD TR+ +N ++NQ + G+ A + + L L+Q FP+
Sbjct: 136 MLDTGKNPDIHTRNFVNRLASENQYSYGQHRAVERYKATLDAALDQAFPE 185
>sp|Q5A3K2|MED10_CANAL Mediator of RNA polymerase II transcription subunit 10 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=NUT2 PE=3
SV=1
Length = 170
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 68 LLQRLNSLVSELDNMVKLSEKCN--------IQVPTEVLNLIDDGKNPDEFTRDVINSCI 119
L+ +LN L+S+L + N +P +V++ I+DG+NPD +TR+ I
Sbjct: 49 LMNKLNQLISQLSQTSTTANDPNDANTNLKQFLIPIDVISYIEDGRNPDIYTREFIEVNA 108
Query: 120 AKNQVTKGKTDAFKSLRKHLLDELEQTFP 148
N KGK FK LR D+L+Q FP
Sbjct: 109 KSNARLKGKMLGFKKLRDVFGDKLKQEFP 137
>sp|P87310|MED10_SCHPO Mediator of RNA polymerase II transcription subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med10 PE=1 SV=2
Length = 144
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 30 DDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLP---LLQRLNSLVSELDNMVKLS 86
DD + + + ++ T + L L V +N P + + L++L+ +L ++ +S
Sbjct: 5 DDMTDEMKSLASRLEDTTQAFYDLALIV--YNLEDTTPSDAIPESLDTLIRDLKSLPDIS 62
Query: 87 EKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQT 146
K N +P +VL I+ G+NPD + R NQ GK A + +K +E++Q
Sbjct: 63 RKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIKQA 122
Query: 147 FPD 149
+P+
Sbjct: 123 YPE 125
>sp|Q1E0Q7|MED10_COCIM Mediator of RNA polymerase II transcription subunit 10
OS=Coccidioides immitis (strain RS) GN=NUT2 PE=3 SV=3
Length = 163
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF S R L E+ P+
Sbjct: 82 SIQLPPEIIDYVDAARNPDIYTREFVELVQKSNQELKGKMEAFASFRDVLAKEMASAMPE 141
Query: 150 -EVEAYREIRAN 160
+ E R ++A
Sbjct: 142 CKKEVERVVKAT 153
>sp|Q6FQ75|MED10_CANGA Mediator of RNA polymerase II transcription subunit 10 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NUT2 PE=3 SV=1
Length = 199
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 72 LNSLVSELDNMVKLSEKCN--------IQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
+ +L +D + KL++ N + VP EV+ I+DG+NPD +TR+ + + NQ
Sbjct: 53 VTNLKRNVDRIFKLNQTSNDPQSALKDVNVPLEVVQYIEDGRNPDIYTREFVEAIRRSNQ 112
Query: 124 VTKGKTDAFKSLRKHLLDELEQTFP---DEVE 152
+ K LR L +++++ FP D+VE
Sbjct: 113 YQRAKMHGMGMLRDSLAEKIKEQFPELKDDVE 144
>sp|A1CR70|MED10_ASPCL Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=nut2 PE=3 SV=1
Length = 167
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 89 CNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFP 148
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF S R L E+ P
Sbjct: 89 SSIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAMP 148
Query: 149 D 149
+
Sbjct: 149 E 149
>sp|Q4WJH6|MED10_ASPFU Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=nut2 PE=3 SV=1
Length = 159
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF S R L E+ P+
Sbjct: 79 DIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAMPE 138
>sp|A1D434|MED10_NEOFI Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=nut2 PE=3 SV=1
Length = 167
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF S R L E+ P+
Sbjct: 87 DIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAMPE 146
>sp|Q7RXK7|MED10_NEUCR Mediator of RNA polymerase II transcription subunit 10
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nut-2 PE=3 SV=1
Length = 253
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
N +P ++ +++G+NPD +TR+ I NQ+ +GK AF+ R L E+E P+
Sbjct: 138 NPGIPIPLITYVENGRNPDVYTREFIELVRRSNQLMRGKMHAFRDFRDVLAGEMEAALPE 197
>sp|Q2H8S0|MED10_CHAGB Mediator of RNA polymerase II transcription subunit 10
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=NUT2 PE=3 SV=1
Length = 167
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 35 NLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL--------- 85
+L V + ++ + L Q+ + VS+++AA + P L + LD +
Sbjct: 7 DLQNVQDDIKNVIQDLFQVLVQVSNYDAAGR-PTRDVLAQDIQTLDKTLHTLHTNAQHLP 65
Query: 86 SEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQ 145
+ + +P ++ +++G+NPD +TR+ NQ+ +GK AF+ R L E+E
Sbjct: 66 TPTADKPIPEPLIQYVENGRNPDIYTREFAELVRRMNQLARGKMHAFRDFRDVLAREMES 125
Query: 146 TFPDEVEAYREIRANSAAVSNA 167
P E+RA+ V A
Sbjct: 126 ALP-------ELRADVQMVVGA 140
>sp|Q0CTF3|MED10_ASPTN Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=nut2 PE=3 SV=1
Length = 155
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 89 CNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFP 148
I++P E+++ +D +NPD +TR+ + NQ KGK +AF R L E+ P
Sbjct: 77 STIELPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFAGFRDVLAREMRSAMP 136
Query: 149 D-EVEAYREIRANSAA 163
+ E R +RA
Sbjct: 137 ECRGEVDRVVRATGGG 152
>sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=NUT2 PE=3 SV=1
Length = 133
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 61 NAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIA 120
+ +Q + + + SL+ L + + + ++ +P E++ ++ +NPD + R+ + +
Sbjct: 20 GSPTQEAMKREIQSLIQNLVKLSRTAPAIHVLIPPEIVMYVEGSRNPDIYNREFVETVQR 79
Query: 121 KNQVTKGKTDAFKSLRKHLLDELEQTFP---DEVEAYREIRANSAAV 164
NQ+ KG+++A ++L+ + +L+ P D++E R + A V
Sbjct: 80 MNQMLKGRSEALQALQAQIAHQLQIAIPEMKDDIE--RAVEATGGKV 124
>sp|Q5B5I6|MED10_EMENI Mediator of RNA polymerase II transcription subunit 10
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=nut2 PE=3 SV=2
Length = 165
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
+I +P E+++ +D +NPD +TR+ + NQ KGK +AF R L E+ P+
Sbjct: 83 SIALPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFADFRDVLAREMRSAMPE 142
>sp|Q6CVN3|MED10_KLULA Mediator of RNA polymerase II transcription subunit 10
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NUT2 PE=3
SV=1
Length = 161
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 86 SEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHL----LD 141
S+ N VP +VL I+DG+NPD +TR+ + + NQ + K LR L +D
Sbjct: 70 SQLQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKIHGLNKLRDSLAEKIID 129
Query: 142 ELEQTFP 148
EL + P
Sbjct: 130 ELPELQP 136
>sp|Q9FUJ2|CKX4_ARATH Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana GN=CKX4 PE=1 SV=2
Length = 524
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 36 LNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPT 95
++QVI+++ +TLG F +P LN + +E D KL +VP
Sbjct: 336 IDQVIDTLSRTLGF-------APGFMFVQDVPYFDFLNRVRNEED---KLRSLGLWEVPH 385
Query: 96 EVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDE 150
LN+ G +F VIN + T G T + + R + + PDE
Sbjct: 386 PWLNIFVPGSRIQDFHDGVINGLLLNQTSTSGVTLFYPTNRNKWNNRMSTMTPDE 440
>sp|C0SPA7|YUKB_BACSU Ftsk domain-containing protein YukB OS=Bacillus subtilis (strain 168)
GN=yukB PE=4 SV=1
Length = 1495
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 27 VAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLS 86
V ADD N++ + VQK G +S + +P+L S EL KL
Sbjct: 1210 VDADDDIGMFNELKSDVQKLQGRF-------ASMEQPAPIPMLPESLS-TRELSIRFKL- 1260
Query: 87 EKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDE 142
E+ + VP + L ++ +P F C+ Q +GKT+ K + +HL+D+
Sbjct: 1261 ERKPLSVP---IGLHEETVSPVYFDLGKHKHCLILGQTQRGKTNVLKVMLEHLIDD 1313
>sp|B1M1U6|RLMN_METRJ Dual-specificity RNA methyltransferase RlmN OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rlmN PE=3 SV=2
Length = 424
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 8 SRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSV-----QKTLGLLHQLYLTVSSFNA 62
SR +GG+G V + + +P NL+ V+++V Q+ LGL + +TVS+
Sbjct: 195 SRDAGGSGEVGRLVTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRR-RITVSTSGV 253
Query: 63 ASQLPLL 69
Q+P L
Sbjct: 254 VPQIPRL 260
>sp|O66405|YZ11_AQUAE Uncharacterized protein aq_aa11 OS=Aquifex aeolicus (strain VF5)
GN=aq_aa11 PE=4 SV=1
Length = 318
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 73 NSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
+LV ELD K S+K ++ + +I + KNPD R+++ + + + K A+
Sbjct: 62 ENLVLELDRHWKESKKREKELEKRLKEIISEYKNPD-LIREILERLLEEGIRREAKDYAY 120
Query: 133 KSLRKHLLDELEQTFPDEVEAYRE 156
+ +K L+ E+ P ++ RE
Sbjct: 121 EKYKKEALELFERFKPYLIKLRRE 144
>sp|Q06909|CARQ_MYXXA RNA polymerase sigma factor CarQ OS=Myxococcus xanthus GN=carQ PE=2
SV=1
Length = 174
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 130 DAFKSLRKHLLDELEQTFPDEVEA 153
D+ SLR+HLLD L+Q PD EA
Sbjct: 102 DSDPSLRRHLLDALQQLHPDHREA 125
>sp|Q1RJZ5|SYM_RICBR Methionine--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=metG PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 33 KQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQ 92
K N +V Q + +++L L ++ N+A Q LL + LDN++ L+E+ NI
Sbjct: 364 KNNDGKVPAITQDAINKIYELPLLKTAINSAKQNILLMEKTEINKILDNIINLAEEANIY 423
Query: 93 VPTE 96
+ +E
Sbjct: 424 IDSE 427
>sp|Q66HB6|CAGE1_RAT Cancer-associated gene 1 protein homolog OS=Rattus norvegicus
GN=Cage1 PE=2 SV=1
Length = 847
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 32 PKQNLNQVINS--VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLS 86
PK+ L +V+ Q T G L+L SS +LP ++R + L S L +++ L+
Sbjct: 575 PKEKLEEVVEPDVTQDTKGTHCNLFLNCSSCKENPELPSMKRTSPLTSRLHSLLALT 631
>sp|Q5FL75|SECA_LACAC Protein translocase subunit SecA OS=Lactobacillus acidophilus
(strain ATCC 700396 / NCK56 / N2 / NCFM) GN=secA PE=3
SV=1
Length = 799
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 112 RDVINSCIAKNQVTKG---KTDAFKSLRKHLLDELEQTFPDEVEA 153
RD I+S +A QVT KT + + L+K L D +E+ F D+ +A
Sbjct: 670 RDFISSSLASEQVTDSIDFKTISVEDLKKKLYDIVEKNFEDKEKA 714
>sp|A5N5B3|FTHS_CLOK5 Formate--tetrahydrofolate ligase OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=fhs PE=3 SV=1
Length = 558
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 32 PKQNLN-QVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKC 89
PK LN + + +++K + L V + +LP + LN+ ++ + +KL EKC
Sbjct: 342 PKTKLNNENLETLEKGI---PNLLKHVENITKVFKLPAVVALNAFPTDTEAELKLVEEKC 398
Query: 90 -------------------NIQVPTEVLNLIDDGKNPDEFT-------RDVINSCIAKNQ 123
I+V EVL LI++GKN +F RD I + K
Sbjct: 399 REFGVSVKLSEVWAKGGEGGIEVAKEVLRLINEGKNDFQFAYDEKLPIRDKIRAIAQKIY 458
Query: 124 VTKGKTDAFKSLRKHLLDELEQ 145
G T F + + +DELE+
Sbjct: 459 GADGVT--FTNQAEKEIDELEK 478
>sp|B9DYW1|FTHS_CLOK1 Formate--tetrahydrofolate ligase OS=Clostridium kluyveri (strain
NBRC 12016) GN=fhs PE=3 SV=1
Length = 558
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 32 PKQNLN-QVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKC 89
PK LN + + +++K + L V + +LP + LN+ ++ + +KL EKC
Sbjct: 342 PKTKLNNENLETLEKGI---PNLLKHVENITKVFKLPAVVALNAFPTDTEAELKLVEEKC 398
Query: 90 -------------------NIQVPTEVLNLIDDGKNPDEFT-------RDVINSCIAKNQ 123
I+V EVL LI++GKN +F RD I + K
Sbjct: 399 REFGVSVKLSEVWAKGGEGGIEVAKEVLRLINEGKNDFQFAYDEKLPIRDKIRAIAQKIY 458
Query: 124 VTKGKTDAFKSLRKHLLDELEQ 145
G T F + + +DELE+
Sbjct: 459 GADGVT--FTNQAEKEIDELEK 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,087,985
Number of Sequences: 539616
Number of extensions: 2746460
Number of successful extensions: 9565
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 9516
Number of HSP's gapped (non-prelim): 88
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)