Query 028220
Match_columns 212
No_of_seqs 120 out of 146
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vcs_A Vesicle transport throu 85.5 4.1 0.00014 30.5 7.9 57 28-84 32-88 (102)
2 2qyw_A Vesicle transport throu 78.3 3.2 0.00011 31.1 4.9 57 28-84 43-99 (102)
3 3cz6_A DNA-binding protein RAP 74.4 4.1 0.00014 34.0 4.9 63 56-122 54-129 (168)
4 3onj_A T-snare VTI1; helix, HA 67.5 6.3 0.00021 29.2 4.2 57 28-84 28-87 (97)
5 3kxe_C Antitoxin protein PARD- 66.3 15 0.00053 26.9 6.1 57 86-149 3-65 (88)
6 2f6m_B Vacuolar protein sortin 64.7 18 0.00062 27.9 6.4 55 100-168 48-106 (109)
7 2caz_B Vacuolar protein sortin 63.4 20 0.00069 29.4 6.7 60 95-168 58-123 (155)
8 2p22_B Vacuolar protein sortin 55.3 19 0.00064 28.3 5.0 55 100-168 57-115 (118)
9 3lqh_A Histone-lysine N-methyl 52.8 58 0.002 26.7 7.9 86 67-152 75-170 (183)
10 2d9d_A BAG family molecular ch 45.6 28 0.00097 26.1 4.4 45 46-109 15-61 (89)
11 3qwg_A ESX-1 secretion-associa 39.4 58 0.002 24.6 5.5 25 90-114 38-64 (123)
12 1s94_A S-syntaxin; three helix 38.8 1.4E+02 0.0048 23.4 9.2 35 134-168 122-156 (180)
13 3qao_A LMO0526 protein, MERR-l 38.3 12 0.0004 31.8 1.5 39 141-179 160-198 (249)
14 2x96_A Angiotensin converting 36.3 2.4E+02 0.0083 26.8 10.5 44 66-109 94-145 (598)
15 2hwy_A Protein SMG5; RNA degra 35.8 21 0.00071 29.3 2.6 37 73-109 10-48 (164)
16 3b5n_D Protein transport prote 35.7 45 0.0015 23.0 4.0 47 30-77 2-48 (64)
17 2p6v_A Transcription initiatio 35.4 84 0.0029 24.5 5.8 46 30-81 10-55 (114)
18 2gv5_C SFI1P; centrin, CDC31P, 34.1 45 0.0015 24.2 3.8 31 109-140 36-66 (73)
19 2wus_R RODZ, putative uncharac 34.0 50 0.0017 24.4 4.3 29 91-119 30-62 (112)
20 1l4a_D S-SNAP25 fusion protein 31.9 72 0.0025 23.0 4.7 28 29-56 21-48 (87)
21 1wrd_A TOM1, target of MYB pro 27.2 1.9E+02 0.0065 21.3 9.6 85 34-137 9-94 (103)
22 1ez3_A Syntaxin-1A; three heli 26.6 1.8E+02 0.0063 21.0 11.7 24 134-157 91-114 (127)
23 3pwx_A Putative flagellar HOOK 26.1 1.7E+02 0.0057 24.4 6.7 51 36-86 40-92 (239)
24 1gqo_A Dehydroquinase; dehydra 26.0 66 0.0023 25.9 3.9 38 36-76 27-64 (143)
25 2x2e_A Dynamin-1; nitration, h 25.5 95 0.0032 26.6 5.2 59 129-187 275-340 (353)
26 3r1f_A ESX-1 secretion-associa 25.4 1.6E+02 0.0054 22.3 5.9 26 90-115 40-67 (135)
27 1ygm_A Hypothetical protein BS 24.6 81 0.0028 24.4 4.0 67 28-94 33-117 (118)
28 1h05_A 3-dehydroquinate dehydr 24.3 70 0.0024 25.9 3.8 30 49-78 39-68 (146)
29 1m1j_C Fibrinogen gamma chain; 24.2 1.7E+02 0.0058 26.9 6.9 49 110-159 85-133 (409)
30 2uyg_A 3-dehydroquinate dehydr 23.8 74 0.0025 25.8 3.9 28 49-76 36-63 (149)
31 1uqr_A 3-dehydroquinate dehydr 23.6 73 0.0025 26.0 3.8 27 49-75 38-64 (154)
32 3opc_A Uncharacterized protein 23.4 2.4E+02 0.0083 21.3 7.6 110 31-143 8-129 (154)
33 4abx_A DNA repair protein RECN 23.3 2.2E+02 0.0075 22.3 6.6 15 129-143 145-159 (175)
34 1gtz_A 3-dehydroquinate dehydr 23.0 71 0.0024 26.1 3.6 39 36-77 33-71 (156)
35 1p68_A De novo designed protei 22.8 1.2E+02 0.0041 22.6 4.5 18 35-52 4-21 (102)
36 2nx9_A Oxaloacetate decarboxyl 22.5 99 0.0034 28.7 5.0 91 60-159 341-455 (464)
37 2d4x_A Flagellar HOOK-associat 22.3 1.1E+02 0.0038 25.0 4.8 50 37-86 39-90 (248)
38 3hbl_A Pyruvate carboxylase; T 22.1 80 0.0027 32.5 4.6 102 59-160 874-994 (1150)
39 1io1_A Phase 1 flagellin; beta 21.7 1.2E+02 0.004 27.4 5.2 49 36-84 25-75 (398)
40 3lwz_A 3-dehydroquinate dehydr 20.6 88 0.003 25.4 3.7 37 36-75 34-70 (153)
41 3u80_A 3-dehydroquinate dehydr 20.2 91 0.0031 25.3 3.7 39 36-77 31-69 (151)
42 2dae_A KIAA0733 protein; mitog 20.0 36 0.0012 24.8 1.1 18 138-155 12-29 (75)
43 3mil_A Isoamyl acetate-hydroly 20.0 1.9E+02 0.0065 21.9 5.4 24 129-152 193-216 (240)
No 1
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=85.53 E-value=4.1 Score=30.49 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=51.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHHHHHhHHh
Q 028220 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK 84 (212)
Q Consensus 28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~L~~L~~ 84 (212)
..+..+..+.++=..|++.-+.|.||.+-|.+..++....+..||..+-+.|.++.+
T Consensus 32 ~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 32 PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888889999888999999999999888899999999999999998875
No 2
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=78.34 E-value=3.2 Score=31.14 Aligned_cols=57 Identities=11% Similarity=0.175 Sum_probs=48.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHHHHHhHHh
Q 028220 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK 84 (212)
Q Consensus 28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~L~~L~~ 84 (212)
+.+..+..+.++=..|++.-+.|.||.+-|.+..++....+..||..+-+.|.++.+
T Consensus 43 ~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 43 GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677778888788888888999999999999888888999999999999988764
No 3
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=74.42 E-value=4.1 Score=33.95 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=42.8
Q ss_pred hccccCCCchhhHHHHH-------HHHHHHHHhHHhhhhhCCCCC-chHHHHhhhcCCCc-----cHHHHHHHHHHHHHh
Q 028220 56 TVSSFNAASQLPLLQRL-------NSLVSELDNMVKLSEKCNIQV-PTEVLNLIDDGKNP-----DEFTRDVINSCIAKN 122 (212)
Q Consensus 56 ~VsdFq~~Sq~~L~qKI-------n~LV~~L~~L~~~a~~~di~I-PlEVl~yID~GRNP-----DiYTREfVE~~~~~N 122 (212)
+-.+|.++..+.|.+.+ +...+++-. |-.++..+ |..|++++-.|++| -+||++-=+.....|
T Consensus 54 i~~~~e~s~~~~Lv~~l~~e~Gi~~~fs~~Ii~----ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d 129 (168)
T 3cz6_A 54 ISGDYEPSQAEKLVQDLCDETGIRKNFSTSILT----CLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSND 129 (168)
T ss_dssp HHSCCCTTCHHHHHHHHHHHHCBCHHHHHHHHH----HTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCC
T ss_pred HhcccChhhHHHHHHHHHHHhCcccccHHHHHH----HhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHcCC
Confidence 33477887777787777 223333222 22467777 99999999999993 699998766555444
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=67.54 E-value=6.3 Score=29.20 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=48.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhcccc--CCCchhhHHHHHHHHHHHHHh-HHh
Q 028220 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSF--NAASQLPLLQRLNSLVSELDN-MVK 84 (212)
Q Consensus 28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdF--q~~Sq~~L~qKIn~LV~~L~~-L~~ 84 (212)
..+..+..|.++=..+++.-+.|.||.+-|.+. .++....+..||..+-+.|.+ +.+
T Consensus 28 ~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~ 87 (97)
T 3onj_A 28 PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKR 87 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888999999999999 667788999999999999998 764
No 5
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=66.33 E-value=15 Score=26.93 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=45.2
Q ss_pred hhhCCCCCchHHHHhhhc------CCCccHHHHHHHHHHHHHhhHhhccHHHHHHHHHHHHHHHHhhChh
Q 028220 86 SEKCNIQVPTEVLNLIDD------GKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149 (212)
Q Consensus 86 a~~~di~IPlEVl~yID~------GRNPDiYTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~eeL~~~FPe 149 (212)
+...+|.+|.++..+||+ ..|...+-|+.|........ .++.+|..|.+.+.+..|+
T Consensus 3 ~~~~sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~-------~l~~Lr~~l~~G~~Sg~~~ 65 (88)
T 3kxe_C 3 SKNTSVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEA-------KLAALRAALIEGEESGFIE 65 (88)
T ss_dssp --CEEECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTCEES
T ss_pred CceeeeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHCCCCC
Confidence 445688999999988874 46999999999988877643 3567999999999988886
No 6
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=64.65 E-value=18 Score=27.92 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=40.3
Q ss_pred hhhcCCCccHHHHHHHHHHHHHhhHhhccHHHHHHHHHHHHH----HHHhhChhhHHHHHHHHhcchhhhHHH
Q 028220 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLD----ELEQTFPDEVEAYREIRANSAAVSNAI 168 (212)
Q Consensus 100 yID~GRNPDiYTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~e----eL~~~FPel~~~yr~ir~~~~a~~~~~ 168 (212)
||.|.-.|..||..|-....+ ||..+.. .+.+.||++..=-+..+-+.|+...|+
T Consensus 48 yikD~It~~eYt~~c~rLL~Q--------------yKt~~~~~~~~~v~~~~~~le~F~~~y~l~cp~A~~RL 106 (109)
T 2f6m_B 48 YLKDSIDDTQYTNTVDKLLKQ--------------FKVYLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 106 (109)
T ss_dssp HHTTCSCHHHHHHHHHHHHHH--------------HHHHHTCTTTTHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHH--------------HHHHHhcccHHHHHHHCCCHHHHHHHhCCCChHHHHHH
Confidence 888999999999999876543 3333331 344668887777777788888888886
No 7
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=63.35 E-value=20 Score=29.39 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=42.6
Q ss_pred hHHHH--hhhcCCCccHHHHHHHHHHHHHhhHhhccHHHHHHHHHHHH----HHHHhhChhhHHHHHHHHhcchhhhHHH
Q 028220 95 TEVLN--LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLL----DELEQTFPDEVEAYREIRANSAAVSNAI 168 (212)
Q Consensus 95 lEVl~--yID~GRNPDiYTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~----eeL~~~FPel~~~yr~ir~~~~a~~~~~ 168 (212)
+|-|+ ||.|.-.|..||..|-....+ ||..+. +.+.+.||++..-.+..+-+.|+...|+
T Consensus 58 LE~LEKAYikD~It~~eYT~aC~rLL~Q--------------YKt~~~~~~~~~v~~~~~dle~F~~~Y~l~CP~A~~RL 123 (155)
T 2caz_B 58 LDHVEKAYLKDSIDDTQYTNTVDKLLKQ--------------FKVYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL 123 (155)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHH--------------HHHHHTSSSCHHHHHHTCSHHHHHHHTTCCCTTHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH--------------HHHHHhcchhHHHHHHCCCHHHHHHHhCCcChHHHHHH
Confidence 44443 889999999999999877543 333333 1345669988777777777888877776
No 8
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=55.30 E-value=19 Score=28.28 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=25.7
Q ss_pred hhhcCCCccHHHHHHHHHHHHHhhHhhccHHHHHHHHHHHHH----HHHhhChhhHHHHHHHHhcchhhhHHH
Q 028220 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLD----ELEQTFPDEVEAYREIRANSAAVSNAI 168 (212)
Q Consensus 100 yID~GRNPDiYTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~e----eL~~~FPel~~~yr~ir~~~~a~~~~~ 168 (212)
||.|.-.|..||..|-....+ ||..+.. .+.+.||++..=-+..+-+.|+...|+
T Consensus 57 yikD~It~~eYt~~C~rLL~Q--------------YKt~~~~~~~~~v~~~~~dle~F~~~y~l~cP~A~~RL 115 (118)
T 2p22_B 57 YLKDSIDDTQYTNTVDKLLKQ--------------FKVYLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 115 (118)
T ss_dssp HTTTSSCHHHHHHHHHHHHHH--------------HHHHHHTTTTTC-------------------CCHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHH--------------HHHHHhcccHHHHHHHCCCHHHHHHHhCCCChHHHHHH
Confidence 888888999999999876543 4444331 344668887776667777888877776
No 9
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=52.82 E-value=58 Score=26.70 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhHHhhhh--hCCCCCchHHH---HhhhcC--CCccHHHHHHH---HHHHHHhhHhhccHHHHHHHH
Q 028220 67 PLLQRLNSLVSELDNMVKLSE--KCNIQVPTEVL---NLIDDG--KNPDEFTRDVI---NSCIAKNQVTKGKTDAFKSLR 136 (212)
Q Consensus 67 ~L~qKIn~LV~~L~~L~~~a~--~~di~IPlEVl---~yID~G--RNPDiYTREfV---E~~~~~NQ~~kGKi~a~~~fR 136 (212)
.|...+..+++.|..-....+ .+.++-|+++- +-+++| ++++-|.-|+. ..|++.|+-..+--.|=..++
T Consensus 75 el~~~l~~vl~~L~~~~~s~~~~~y~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~ 154 (183)
T 3lqh_A 75 ELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVK 154 (183)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHTCCC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHhhhhhhhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHH
Confidence 344445666666665554333 35667887754 356666 67777766654 345555555544444445688
Q ss_pred HHHHHHHHhhChhhHH
Q 028220 137 KHLLDELEQTFPDEVE 152 (212)
Q Consensus 137 ~~L~eeL~~~FPel~~ 152 (212)
..+.+.|++.||....
T Consensus 155 ~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 155 SFFIRQMERVFPWFSV 170 (183)
T ss_dssp HHHHHHHHHHCTTSCG
T ss_pred HHHHHHHHHHCCCCCc
Confidence 8999999999997643
No 10
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.62 E-value=28 Score=26.10 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhccccCCCchhh--HHHHHHHHHHHHHhHHhhhhhCCCCCchHHHHhhhcCCCccH
Q 028220 46 TLGLLHQLYLTVSSFNAASQLP--LLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDE 109 (212)
Q Consensus 46 ~L~~L~Ql~i~VsdFq~~Sq~~--L~qKIn~LV~~L~~L~~~a~~~di~IPlEVl~yID~GRNPDi 109 (212)
+....+++.-.+--|+..|..- +...|+.|+-+|++ |+-|+||++
T Consensus 15 v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDe-------------------v~~~~NpcI 61 (89)
T 2d9d_A 15 VLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDE-------------------VSLEKNPCI 61 (89)
T ss_dssp HHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGG-------------------GCSCSSHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhh-------------------cccCCChHH
Confidence 3345555555555566666654 44556666666554 456888876
No 11
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=39.44 E-value=58 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=16.6
Q ss_pred CCCCchHHHHhhhcCC--CccHHHHHH
Q 028220 90 NIQVPTEVLNLIDDGK--NPDEFTRDV 114 (212)
Q Consensus 90 di~IPlEVl~yID~GR--NPDiYTREf 114 (212)
...|...-+..|+.|+ ||.+=|-.-
T Consensus 38 G~~iS~s~is~iE~G~r~~Ps~~~l~~ 64 (123)
T 3qwg_A 38 GITMSAPYLSQLRSGNRTNPSGATMAA 64 (123)
T ss_dssp TCCCCHHHHHHHHHTSSCCCCHHHHHH
T ss_pred CCCcCHHHHHHHHcCCCCCCCHHHHHH
Confidence 3457777888888884 687644433
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=38.75 E-value=1.4e+02 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHhcchhhhHHH
Q 028220 134 SLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAI 168 (212)
Q Consensus 134 ~fR~~L~eeL~~~FPel~~~yr~ir~~~~a~~~~~ 168 (212)
..|......|...|=++...|+.++...-..-|..
T Consensus 122 Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~ 156 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKAR 156 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888999998887655555443
No 13
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=38.30 E-value=12 Score=31.83 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHhhChhhHHHHHHHHhcchhhhHHHhhhhhHHHHHH
Q 028220 141 DELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWML 179 (212)
Q Consensus 141 eeL~~~FPel~~~yr~ir~~~~a~~~~~~~~~~~~~~~~ 179 (212)
+++.+-|-++.+..+.+++-+|....-+.....|..|++
T Consensus 160 ~~~~~~~~~l~~~~~~~~g~~p~s~e~q~~~~~~~~~l~ 198 (249)
T 3qao_A 160 LTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLN 198 (249)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHH
Confidence 334444445555555544434444444555677889986
No 14
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A
Probab=36.31 E-value=2.4e+02 Score=26.76 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHhHHhhhh--------hCCCCCchHHHHhhhcCCCccH
Q 028220 66 LPLLQRLNSLVSELDNMVKLSE--------KCNIQVPTEVLNLIDDGKNPDE 109 (212)
Q Consensus 66 ~~L~qKIn~LV~~L~~L~~~a~--------~~di~IPlEVl~yID~GRNPDi 109 (212)
....++++.+++.+.++-..+. .|+..+|.++.+.+-..+|++.
T Consensus 94 ~~~~~~~~~l~~~~~~~y~~a~v~~~~~~~~~~l~l~~~l~~~~a~s~d~~~ 145 (598)
T 2x96_A 94 EDDYAELLDTLSAMESNFAKVKVCDYKDSTKCDLALDPEIEEVISKSRDHEE 145 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCCSSCTTCCCBCTTTHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccccCCCHHHHHHHHHCCCHHH
Confidence 4566777888888888876544 1556699999999977777764
No 15
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=35.81 E-value=21 Score=29.28 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHhhhh--hCCCCCchHHHHhhhcCCCccH
Q 028220 73 NSLVSELDNMVKLSE--KCNIQVPTEVLNLIDDGKNPDE 109 (212)
Q Consensus 73 n~LV~~L~~L~~~a~--~~di~IPlEVl~yID~GRNPDi 109 (212)
|-|++.|..+.++.. ...+-||.-||+-+|.=++-.-
T Consensus 10 N~Li~~l~~i~~l~~~~~~~IvIP~~Vi~ELD~LK~~~~ 48 (164)
T 2hwy_A 10 QALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP 48 (164)
T ss_dssp HHHHHCHHHHHHHHHHSSSEEEECHHHHHHHHHHC-CCH
T ss_pred HHHHhCHHHHHHHHhCCCcEEEEcHHHHHHHHHhccCCH
Confidence 567777777776654 4678899999999998776663
No 16
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=35.68 E-value=45 Score=22.99 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHH
Q 028220 30 DDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVS 77 (212)
Q Consensus 30 ~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~ 77 (212)
|..+.++.+-|+.+...++.|..+++.... --.+|..+.++|+.=+.
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~-Eid~QN~~ldrI~~k~d 48 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGK-ELDSQQKRLNNIEESTD 48 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 456778888888888899999999984320 01234444444444333
No 17
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=35.36 E-value=84 Score=24.55 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHHHHHh
Q 028220 30 DDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDN 81 (212)
Q Consensus 30 ~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~L~~ 81 (212)
..+.++++. +..+.+||.+|.+++-- .+.+ ..+.+++.+||..|-+
T Consensus 10 ~~~~e~~~n-vkKck~FL~tLi~las~----~~~s-pev~~~Vr~LVq~Ll~ 55 (114)
T 2p6v_A 10 SAATETMEN-VXXCXNFLSTLIXLASS----GXQS-TETAANVXELVQNLLD 55 (114)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTS----SSSC-HHHHHHHHHHHHHHHT
T ss_pred cChHHHHHH-HHHHHHHHHHHHHHHhc----cccC-hHHHHHHHHHHHHHHH
Confidence 344455554 33678899999998861 2233 3488899999988754
No 18
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell; 3.00A {Saccharomyces cerevisiae}
Probab=34.14 E-value=45 Score=24.20 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhHhhccHHHHHHHHHHHH
Q 028220 109 EFTRDVINSCIAKNQVTKGKTDAFKSLRKHLL 140 (212)
Q Consensus 109 iYTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~ 140 (212)
.||-||.+.|-+.+...-+|+ +|++|++.+.
T Consensus 36 Fy~~eC~s~A~~~r~~sl~k~-~l~~~~~K~~ 66 (73)
T 2gv5_C 36 FYTEECNIQAISKRNYQLEKM-VLKKFRERLL 66 (73)
T ss_dssp HHHTHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 699999999999999999998 4666766554
No 19
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=34.00 E-value=50 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCchHHHHhhhcCC-Cc---cHHHHHHHHHHH
Q 028220 91 IQVPTEVLNLIDDGK-NP---DEFTRDVINSCI 119 (212)
Q Consensus 91 i~IPlEVl~yID~GR-NP---DiYTREfVE~~~ 119 (212)
+.|+...|..||+|+ +| ..|++.++.+..
T Consensus 30 ~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA 62 (112)
T 2wus_R 30 TNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYS 62 (112)
T ss_dssp SSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHH
Confidence 458999999999996 43 467888876554
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.92 E-value=72 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=21.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028220 29 ADDPKQNLNQVINSVQKTLGLLHQLYLT 56 (212)
Q Consensus 29 ~~~~~~qL~~~ieSLe~~L~~L~Ql~i~ 56 (212)
.+..+.+..+-|+.|...|+.|+.+++.
T Consensus 21 ~d~~e~eqD~~Ld~ls~~l~rLk~mA~~ 48 (87)
T 1l4a_D 21 NDAREDDMENNMKEVSSMIGNLRNMAID 48 (87)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456777788888888889999998883
No 21
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=27.18 E-value=1.9e+02 Score=21.35 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhH-HHHHHHHHHHHHhHHhhhhhCCCCCchHHHHhhhcCCCccHHHH
Q 028220 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPL-LQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTR 112 (212)
Q Consensus 34 ~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L-~qKIn~LV~~L~~L~~~a~~~di~IPlEVl~yID~GRNPDiYTR 112 (212)
.++..-|+.+...+..|.+ .++.|+|...... .+-|.+|++..+.+... |+++|....|.+
T Consensus 9 ~k~~~el~~v~~n~~lL~E---ML~~~~p~~~~~~~~el~~eL~~~c~~~qp~-----------i~~li~~~~dee---- 70 (103)
T 1wrd_A 9 GKLRSELEMVSGNVRVMSE---MLTELVPTQAEPADLELLQELNRTCRAMQQR-----------VLELIPQIANEQ---- 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHSCTTTCCHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHCCCHH----
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhcCCCCCCcccHHHHHHHHHHHHHHHHH-----------HHHHHhccCCHH----
Confidence 3444444444444444444 4566888654333 34556777777766532 466666665554
Q ss_pred HHHHHHHHHhhHhhccHHHHHHHHH
Q 028220 113 DVINSCIAKNQVTKGKTDAFKSLRK 137 (212)
Q Consensus 113 EfVE~~~~~NQ~~kGKi~a~~~fR~ 137 (212)
.+..++.-|..++--+.-|+.|.+
T Consensus 71 -~l~~lL~~ND~L~~vl~ry~~~~~ 94 (103)
T 1wrd_A 71 -LTEELLIVNDNLNNVFLRHERFER 94 (103)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 455666667666655555555543
No 22
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.59 E-value=1.8e+02 Score=21.03 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHH
Q 028220 134 SLRKHLLDELEQTFPDEVEAYREI 157 (212)
Q Consensus 134 ~fR~~L~eeL~~~FPel~~~yr~i 157 (212)
..|..-...|...|=+++..|+.+
T Consensus 91 Rir~~q~~~L~~kf~e~m~~y~~~ 114 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVEVMSEYNAT 114 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777777653
No 23
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=26.11 E-value=1.7e+02 Score=24.38 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc--cCCCchhhHHHHHHHHHHHHHhHHhhh
Q 028220 36 LNQVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLS 86 (212)
Q Consensus 36 L~~~ieSLe~~L~~L~Ql~i~Vsd--Fq~~Sq~~L~qKIn~LV~~L~~L~~~a 86 (212)
-+..|+++...|..++++-+...+ +.+..+..+...++.|.++|..+-...
T Consensus 40 ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaNt~ 92 (239)
T 3pwx_A 40 QETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFNAQ 92 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344555666667778888777754 667888999999999999999887654
No 24
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=26.03 E-value=66 Score=25.90 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHH
Q 028220 36 LNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLV 76 (212)
Q Consensus 36 L~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV 76 (212)
|+++.+.+.+ ...++++.+.-||.++...|.++|++-.
T Consensus 27 l~di~~~l~~---~a~~~g~~~~~~QSN~EgeLid~Ih~a~ 64 (143)
T 1gqo_A 27 LTDIETDLFQ---FAEALHIQLTFFQSNHEGDLIDAIHEAE 64 (143)
T ss_dssp HHHHHHHHHH---HHHHHTCEEEEEECSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HHHHcCCEEEEEeeCCHHHHHHHHHHhh
Confidence 4444444333 4567899999999999999999998764
No 25
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=25.51 E-value=95 Score=26.59 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHHHHHHHHhcchhhhHHHhhh-------hhHHHHHHHHHHHHHH
Q 028220 129 TDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSE-------AHHVEWMLSICCQFFM 187 (212)
Q Consensus 129 i~a~~~fR~~L~eeL~~~FPel~~~yr~ir~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~ 187 (212)
-..-+.+|+.|...+.+++|.+...++........+-.++-.. .....++.+.|..|.-
T Consensus 275 ~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 340 (353)
T 2x2e_A 275 PYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKE 340 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHH
Confidence 4445668999999999999998888887776655555544322 1123577777776653
No 26
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=25.44 E-value=1.6e+02 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=17.0
Q ss_pred CCCCchHHHHhhhcCC--CccHHHHHHH
Q 028220 90 NIQVPTEVLNLIDDGK--NPDEFTRDVI 115 (212)
Q Consensus 90 di~IPlEVl~yID~GR--NPDiYTREfV 115 (212)
...|...-|..++.|+ ||.+-|-.-|
T Consensus 40 G~~is~s~is~~E~G~r~~Ps~~~l~~i 67 (135)
T 3r1f_A 40 GITMSAPYLSQLRSGNRTNPSGATMAAL 67 (135)
T ss_dssp TCCCCHHHHHHHHHTSSCCCCHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCCCCCCHHHHHHH
Confidence 3457777788888884 7876554433
No 27
>1ygm_A Hypothetical protein BSU31320; alpha-helical bundle, integral membrane protein; NMR {Bacillus subtilis subsp}
Probab=24.57 E-value=81 Score=24.40 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=43.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhccccCC------------------CchhhHHHHHHHHHHHHHhHHhhhhhC
Q 028220 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNA------------------ASQLPLLQRLNSLVSELDNMVKLSEKC 89 (212)
Q Consensus 28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~------------------~Sq~~L~qKIn~LV~~L~~L~~~a~~~ 89 (212)
.-++-+.||.+-|+.+-+-|..+.|+.--...=.| -.++.+++|+|++|.++-.++-..+..
T Consensus 33 Vt~~EkeQLS~AIDrmnEGLD~fIqlYNeSe~DepLiqledetael~~qA~~~yG~e~~N~klN~IIkqiLs~sls~eg~ 112 (118)
T 1ygm_A 33 VTSEEKEQLSTAIDRMNEGLDAFIQLYNESEIDEPLIQLDDDTAELMKQARDMYGQEKLNEKLNTIIKQILSISVSEEGE 112 (118)
T ss_dssp CSCSHHHHHHHHHHTTTHHHHHHHHHCCSSSCSSCSSCSHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHTTTSCSST
T ss_pred cChHHHHHHHHHHHHHhhhHHHHHHHHccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 44677889999888887777777665432111111 156789999999999887765444333
Q ss_pred CCCCc
Q 028220 90 NIQVP 94 (212)
Q Consensus 90 di~IP 94 (212)
.--||
T Consensus 113 ~~lvp 117 (118)
T 1ygm_A 113 KELVP 117 (118)
T ss_dssp TTSCC
T ss_pred cccCC
Confidence 33444
No 28
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=24.25 E-value=70 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.6
Q ss_pred HHHHhhhhccccCCCchhhHHHHHHHHHHH
Q 028220 49 LLHQLYLTVSSFNAASQLPLLQRLNSLVSE 78 (212)
Q Consensus 49 ~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~ 78 (212)
...++++.+.-||.++...|.++|++-...
T Consensus 39 ~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~ 68 (146)
T 1h05_A 39 EAAELGLKAVVRQSDSEAQLLDWIHQAADA 68 (146)
T ss_dssp HHHHTTCEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeeCCHHHHHHHHHHhhhc
Confidence 456789999999999999999999987543
No 29
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.24 E-value=1.7e+02 Score=26.94 Aligned_cols=49 Identities=6% Similarity=0.129 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhHhhccHHHHHHHHHHHHHHHHhhChhhHHHHHHHHh
Q 028220 110 FTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRA 159 (212)
Q Consensus 110 YTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~eeL~~~FPel~~~yr~ir~ 159 (212)
++++.++...+--..++..-..++.++..|. .+.+..-++...+..+..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~-~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHI-MNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 6777777766665555666666767776653 344555556666655554
No 30
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=23.84 E-value=74 Score=25.80 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=24.1
Q ss_pred HHHHhhhhccccCCCchhhHHHHHHHHH
Q 028220 49 LLHQLYLTVSSFNAASQLPLLQRLNSLV 76 (212)
Q Consensus 49 ~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV 76 (212)
...++++.+.-||.++...|.++|++-.
T Consensus 36 ~a~~~g~~v~~~QSN~EgeLId~Ih~a~ 63 (149)
T 2uyg_A 36 WGAELGLGVVFRQTNYEGQLIEWVQQAH 63 (149)
T ss_dssp HHHHTTCCEEEEECSCHHHHHHHHHHTT
T ss_pred HHHHcCCEEEEEeeCCHHHHHHHHHHhc
Confidence 4567899999999999999999998753
No 31
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=23.62 E-value=73 Score=25.99 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHhhhhccccCCCchhhHHHHHHHH
Q 028220 49 LLHQLYLTVSSFNAASQLPLLQRLNSL 75 (212)
Q Consensus 49 ~L~Ql~i~VsdFq~~Sq~~L~qKIn~L 75 (212)
...++++.+.-||.++...|.++|++-
T Consensus 38 ~a~~~g~~l~~~QSN~EGeLId~Ih~a 64 (154)
T 1uqr_A 38 SAQAQGYELDYFQANGEESLINRIHQA 64 (154)
T ss_dssp HHHHTTCEEEEEECSSHHHHHHHHHHT
T ss_pred HHHHCCCEEEEEeeCCHHHHHHHHHHh
Confidence 456789999999999999999999864
No 32
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=23.43 E-value=2.4e+02 Score=21.31 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhccc-cCCCchhhHHHHHHHHHHHHHhHHhhhhh----CCCCCchH-HHHhhhcC
Q 028220 31 DPKQNLNQVINSVQKTLGLLHQLYLTVSS-FNAASQLPLLQRLNSLVSELDNMVKLSEK----CNIQVPTE-VLNLIDDG 104 (212)
Q Consensus 31 ~~~~qL~~~ieSLe~~L~~L~Ql~i~Vsd-Fq~~Sq~~L~qKIn~LV~~L~~L~~~a~~----~di~IPlE-Vl~yID~G 104 (212)
.....|++-++.++.++..|.+=.-.+.. .+...-+.+.++...++..|..++..... ..++-|.. +-.++.
T Consensus 8 ~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~-- 85 (154)
T 3opc_A 8 ALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA-- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH--
Confidence 34445555555555555555543333333 44556677888889999999888765432 23332332 223333
Q ss_pred CCcc---HHH--HHHHHHHHHHhhHhhccH-HHHHHHHHHHHHHH
Q 028220 105 KNPD---EFT--RDVINSCIAKNQVTKGKT-DAFKSLRKHLLDEL 143 (212)
Q Consensus 105 RNPD---iYT--REfVE~~~~~NQ~~kGKi-~a~~~fR~~L~eeL 143 (212)
.+|+ .|. ++.++.|...|+. ||.+ +.--.|-..+..-|
T Consensus 86 ~~~~l~~~w~~l~~l~~~c~~~N~~-Ng~Li~~~l~~~~~~L~~L 129 (154)
T 3opc_A 86 AHPELGPLWQALQANAAQAREHNQR-NGTLIAVNLRHTQESLDAL 129 (154)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4674 344 5888899999975 4544 33333333334444
No 33
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=23.32 E-value=2.2e+02 Score=22.32 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 028220 129 TDAFKSLRKHLLDEL 143 (212)
Q Consensus 129 i~a~~~fR~~L~eeL 143 (212)
++.+-.|++.+..+|
T Consensus 145 ~eell~~~~~~~~eL 159 (175)
T 4abx_A 145 LEDVVEFGAQAAEEL 159 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344443333
No 34
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=23.04 E-value=71 Score=26.08 Aligned_cols=39 Identities=15% Similarity=-0.054 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHH
Q 028220 36 LNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVS 77 (212)
Q Consensus 36 L~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~ 77 (212)
|+++.+.+.+ ...++++.+.-||.++...|.++|++-..
T Consensus 33 l~di~~~l~~---~a~~~g~~v~~~QSN~EGeLId~Ih~a~~ 71 (156)
T 1gtz_A 33 LADVEALCVK---AAAAHGGTVDFRQSNHEGELVDWIHEARL 71 (156)
T ss_dssp HHHHHHHHHH---HHHTTTCCEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHcCCEEEEEeeCCHHHHHHHHHHhhh
Confidence 4444444332 45678999999999999999999987654
No 35
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=22.82 E-value=1.2e+02 Score=22.59 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028220 35 NLNQVINSVQKTLGLLHQ 52 (212)
Q Consensus 35 qL~~~ieSLe~~L~~L~Q 52 (212)
.|++++|.|++++.+||.
T Consensus 4 klndlledlqevlknlhk 21 (102)
T 1p68_A 4 KLNDLLEDLQEVLKNLHK 21 (102)
T ss_dssp THHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 356666666666666654
No 36
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=22.55 E-value=99 Score=28.69 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=54.8
Q ss_pred cCCCchhhHHHHHHHHHHHHHhHHhhhhhCCCCCchHHHHhhhc--CCCccHHHHHHHHHHHHHhhHhhcc-----HHHH
Q 028220 60 FNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDD--GKNPDEFTRDVINSCIAKNQVTKGK-----TDAF 132 (212)
Q Consensus 60 Fq~~Sq~~L~qKIn~LV~~L~~L~~~a~~~di~IPlEVl~yID~--GRNPDiYTREfVE~~~~~NQ~~kGK-----i~a~ 132 (212)
.+|.||=.=.+-.-.++. ...-..||-+|.+|+-- |+=|--|-.++.+++.+.-+...++ -..|
T Consensus 341 VTP~Sq~~g~~A~~~vl~---------~~~~~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~ 411 (464)
T 2nx9_A 341 VTPTSQIVGTQAVINVVL---------GERYKTITKETSGVLKGEYGKTPAPVNTELQARVLAGAEAITCRPADLIAAEM 411 (464)
T ss_dssp CTTHHHHHHHHHHHHHHT---------SSTTSSCCHHHHHHHTTTTCCCSSCCCHHHHHHHHTTCCCCCSCGGGSSCCCH
T ss_pred cCchhHhhHHHHHHHHHc---------CCccccCCHHHHHHhCCCCCCCCCCCCHHHHHHHhCCCCCCCCCccccCCcCH
Confidence 567776544443333321 22345799999999965 7888888888888887543333232 1146
Q ss_pred HHHHHHHHHHHH-----------------hhChhhHHHHHHHHh
Q 028220 133 KSLRKHLLDELE-----------------QTFPDEVEAYREIRA 159 (212)
Q Consensus 133 ~~fR~~L~eeL~-----------------~~FPel~~~yr~ir~ 159 (212)
.++|+.|.+... --||+...+|..-|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~~~~~~~~~ 455 (464)
T 2nx9_A 412 PTLQDRVLQQAKEQHITLAENAIDDVLTIALFDQVGWKFLANRH 455 (464)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHcCcHHHHHHHHhhc
Confidence 777777765543 126666666665553
No 37
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=22.31 E-value=1.1e+02 Score=25.02 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc--cCCCchhhHHHHHHHHHHHHHhHHhhh
Q 028220 37 NQVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLS 86 (212)
Q Consensus 37 ~~~ieSLe~~L~~L~Ql~i~Vsd--Fq~~Sq~~L~qKIn~LV~~L~~L~~~a 86 (212)
+.-|+++...|..++++-+...+ +.+..+..+...++.|.++|..+-...
T Consensus 39 e~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~~ 90 (248)
T 2d4x_A 39 ESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANST 90 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44455666667778888887765 455677889999999999999887654
No 38
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=22.05 E-value=80 Score=32.54 Aligned_cols=102 Identities=17% Similarity=0.312 Sum_probs=62.9
Q ss_pred ccCCCchhhHHHHHHHHHHHHHhHHhhhhhCCCCCchHHHHhhhc--CCCccHHHHHHHHHHHHHhhHhhccH------H
Q 028220 59 SFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDD--GKNPDEFTRDVINSCIAKNQVTKGKT------D 130 (212)
Q Consensus 59 dFq~~Sq~~L~qKIn~LV~~L~~L~~~a~~~di~IPlEVl~yID~--GRNPDiYTREfVE~~~~~NQ~~kGKi------~ 130 (212)
-.+|.||=+=.+-+-.+...|..=+-........||-+|.+|+.- |+=|--|-.++.+++.+.-+...++- +
T Consensus 874 ~vtp~sq~vg~~a~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~ 953 (1150)
T 3hbl_A 874 KVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPV 953 (1150)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCCTTHHHHSGGGCCCCHHHHHHTTTSSCCCTTCCCHHHHHHHHTTCCCCSSCGGGGSCCC
T ss_pred eECchhHHHHHHHHHHHHcCCChhhhhcccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhcCCCCccCCccccCChh
Confidence 467888755444444333333211001112346799999999965 88888888888888876433332221 1
Q ss_pred HHHHHHHHHHHHH-----------HhhChhhHHHHHHHHhc
Q 028220 131 AFKSLRKHLLDEL-----------EQTFPDEVEAYREIRAN 160 (212)
Q Consensus 131 a~~~fR~~L~eeL-----------~~~FPel~~~yr~ir~~ 160 (212)
-|+++|+.|.+.. .--||+...+|.+-|..
T Consensus 954 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 994 (1150)
T 3hbl_A 954 DFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQ 994 (1150)
T ss_dssp CHHHHHHHHHHHSCSCCCHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCCHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2777777776542 23588888888887764
No 39
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=21.71 E-value=1.2e+02 Score=27.45 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc--cCCCchhhHHHHHHHHHHHHHhHHh
Q 028220 36 LNQVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVK 84 (212)
Q Consensus 36 L~~~ieSLe~~L~~L~Ql~i~Vsd--Fq~~Sq~~L~qKIn~LV~~L~~L~~ 84 (212)
-+.-|+++...|+.++++-++..+ +.+..+..+...|+.|.++|.++..
T Consensus 25 ae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~ 75 (398)
T 1io1_A 25 TEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSG 75 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666667778888888775 4556778899999999999998865
No 40
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=20.60 E-value=88 Score=25.44 Aligned_cols=37 Identities=8% Similarity=0.298 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHH
Q 028220 36 LNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSL 75 (212)
Q Consensus 36 L~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~L 75 (212)
|+++.+.+.+ ...++++.+.-||.++...|.++|++-
T Consensus 34 l~di~~~l~~---~a~~~g~~~~~~QSN~EgeLId~Ih~a 70 (153)
T 3lwz_A 34 LAEIVSQLEI---QAQGMDVALSHLQSNAEHALIDSIHQA 70 (153)
T ss_dssp HHHHHHHHHH---HHHHTTEEEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHcCCEEEEEecCCHHHHHHHHHHh
Confidence 4444444433 455789999999999999999999874
No 41
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=20.22 E-value=91 Score=25.29 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHH
Q 028220 36 LNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVS 77 (212)
Q Consensus 36 L~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~ 77 (212)
|+++.+.+.+ .-.++++.+.-||.++...|.++|++-..
T Consensus 31 l~di~~~l~~---~a~~~g~~v~~~QSN~EgeLId~Ih~a~~ 69 (151)
T 3u80_A 31 LDTLRKLCAE---WGKDLGLEVEVRQTDDEAEMVRWMHQAAD 69 (151)
T ss_dssp HHHHHHHHHH---HHHHTTEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHcCCEEEEEecCCHHHHHHHHHHhhh
Confidence 4454444333 45578999999999999999999998643
No 42
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.02 E-value=36 Score=24.84 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=14.6
Q ss_pred HHHHHHHhhChhhHHHHH
Q 028220 138 HLLDELEQTFPDEVEAYR 155 (212)
Q Consensus 138 ~L~eeL~~~FPel~~~yr 155 (212)
+|..+|.+.|||+.+.+=
T Consensus 12 qvfheLkQrFPEvPd~VV 29 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVV 29 (75)
T ss_dssp HHHHHHHHHSSSSCHHHH
T ss_pred HHHHHHHHhcccCcHHHH
Confidence 467889999999988653
No 43
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.02 E-value=1.9e+02 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHH
Q 028220 129 TDAFKSLRKHLLDELEQTFPDEVE 152 (212)
Q Consensus 129 i~a~~~fR~~L~eeL~~~FPel~~ 152 (212)
..+++.+-+.+.+.|.+.||++..
T Consensus 193 ~~G~~~~a~~l~~~l~~~~p~~~~ 216 (240)
T 3mil_A 193 GKGYKIFHDELLKVIETFYPQYHP 216 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSG
T ss_pred HHHHHHHHHHHHHHHHHhccccCh
Confidence 567888999999999999998753
Done!