Query 028221
Match_columns 212
No_of_seqs 125 out of 309
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 9.4E-51 2E-55 315.8 9.8 101 21-121 1-101 (101)
2 PF05308 Mito_fiss_reg: Mitoch 97.1 0.0019 4.1E-08 57.9 7.4 23 105-127 122-144 (253)
3 PF05308 Mito_fiss_reg: Mitoch 95.9 0.018 3.8E-07 51.8 6.0 22 96-117 120-141 (253)
4 COG3416 Uncharacterized protei 94.9 0.25 5.4E-06 44.3 9.5 68 61-128 11-78 (233)
5 PF09849 DUF2076: Uncharacteri 88.5 4 8.6E-05 36.8 9.2 63 61-123 11-73 (247)
6 PF09006 Surfac_D-trimer: Lung 86.6 1.4 3.1E-05 30.8 4.1 28 100-127 1-28 (46)
7 PF01213 CAP_N: Adenylate cycl 86.4 0.84 1.8E-05 42.2 3.9 19 110-129 185-203 (312)
8 PLN02523 galacturonosyltransfe 85.7 4.9 0.00011 40.4 8.9 67 64-139 145-213 (559)
9 KOG2675 Adenylate cyclase-asso 84.2 2.5 5.4E-05 41.6 6.0 22 107-129 186-207 (480)
10 KOG1924 RhoA GTPase effector D 83.7 5.8 0.00013 41.9 8.7 7 77-83 431-437 (1102)
11 PRK10265 chaperone-modulator p 83.6 2 4.4E-05 33.2 4.3 32 95-126 68-99 (101)
12 KOG1924 RhoA GTPase effector D 82.4 2 4.2E-05 45.2 4.8 6 110-115 493-498 (1102)
13 PF06698 DUF1192: Protein of u 81.0 4 8.6E-05 29.7 4.7 31 100-130 23-53 (59)
14 PF11333 DUF3135: Protein of u 80.2 5.7 0.00012 30.4 5.6 66 45-114 15-82 (83)
15 PF07106 TBPIP: Tat binding pr 79.5 1.5 3.2E-05 36.1 2.3 80 47-126 20-107 (169)
16 PLN02742 Probable galacturonos 72.9 15 0.00033 36.8 7.7 60 72-139 132-191 (534)
17 PF12097 DUF3573: Protein of u 68.8 5.5 0.00012 38.2 3.5 22 99-120 43-64 (383)
18 PRK10803 tol-pal system protei 68.2 7.6 0.00017 34.6 4.2 30 98-127 54-83 (263)
19 PF13334 DUF4094: Domain of un 68.0 5 0.00011 31.3 2.6 24 97-120 72-95 (95)
20 PRK00295 hypothetical protein; 65.3 12 0.00026 27.3 4.0 25 99-123 27-51 (68)
21 COG5509 Uncharacterized small 63.8 16 0.00034 27.2 4.4 30 100-129 27-56 (65)
22 cd01111 HTH_MerD Helix-Turn-He 62.9 25 0.00054 27.3 5.6 28 96-123 78-105 (107)
23 PF06305 DUF1049: Protein of u 62.6 17 0.00036 25.2 4.2 26 99-124 42-67 (68)
24 KOG4552 Vitamin-D-receptor int 62.1 34 0.00073 31.3 7.0 57 53-117 48-107 (272)
25 PF08657 DASH_Spc34: DASH comp 60.5 33 0.00071 31.1 6.7 41 89-129 171-211 (259)
26 PF04728 LPP: Lipoprotein leuc 60.0 23 0.0005 25.6 4.6 31 99-130 11-41 (56)
27 cd04766 HTH_HspR Helix-Turn-He 58.7 18 0.00039 26.8 4.0 31 91-122 59-89 (91)
28 PLN02910 polygalacturonate 4-a 57.7 65 0.0014 33.2 8.9 64 68-139 247-312 (657)
29 PF13591 MerR_2: MerR HTH fami 57.2 13 0.00028 27.7 3.1 23 97-119 62-84 (84)
30 PHA01732 proline-rich protein 57.0 13 0.00027 29.5 3.0 7 184-190 62-68 (94)
31 PF04977 DivIC: Septum formati 56.3 25 0.00053 24.7 4.2 25 100-124 26-50 (80)
32 KOG2675 Adenylate cyclase-asso 54.5 16 0.00035 36.1 4.0 10 79-88 90-99 (480)
33 PF04977 DivIC: Septum formati 53.8 34 0.00073 24.0 4.6 30 98-127 17-46 (80)
34 PRK02793 phi X174 lysis protei 53.6 25 0.00054 26.0 4.0 25 99-123 30-54 (72)
35 PLN02769 Probable galacturonos 53.0 84 0.0018 32.3 8.8 59 73-139 239-297 (629)
36 PF10883 DUF2681: Protein of u 52.7 25 0.00053 27.4 4.0 28 100-127 32-59 (87)
37 PLN02829 Probable galacturonos 52.4 48 0.001 34.1 7.0 60 72-139 239-298 (639)
38 PRK00736 hypothetical protein; 52.3 28 0.0006 25.4 4.0 27 100-126 21-47 (68)
39 PRK02119 hypothetical protein; 51.5 28 0.00061 25.8 4.0 23 100-122 32-54 (73)
40 PF13600 DUF4140: N-terminal d 50.4 34 0.00073 25.7 4.4 31 98-128 70-100 (104)
41 PF11336 DUF3138: Protein of u 50.0 30 0.00065 34.4 5.0 27 97-123 24-50 (514)
42 PRK00888 ftsB cell division pr 49.7 30 0.00065 27.1 4.2 21 106-126 42-62 (105)
43 KOG1655 Protein involved in va 49.3 32 0.00069 30.9 4.7 53 53-125 1-53 (218)
44 KOG4196 bZIP transcription fac 48.3 33 0.00072 28.9 4.4 59 72-130 53-113 (135)
45 PF14197 Cep57_CLD_2: Centroso 48.2 36 0.00077 25.1 4.1 32 95-126 37-68 (69)
46 smart00338 BRLZ basic region l 47.1 47 0.001 23.2 4.5 27 99-125 34-60 (65)
47 TIGR02209 ftsL_broad cell divi 46.3 42 0.00091 24.2 4.2 29 98-126 31-59 (85)
48 PF11853 DUF3373: Protein of u 46.1 19 0.00042 35.6 3.1 35 91-126 18-52 (489)
49 PF06295 DUF1043: Protein of u 45.7 38 0.00081 27.3 4.2 28 100-127 27-54 (128)
50 cd00089 HR1 Protein kinase C-r 44.3 62 0.0014 23.1 4.8 29 98-126 42-70 (72)
51 PRK04406 hypothetical protein; 44.1 41 0.00089 25.1 3.9 22 100-121 34-55 (75)
52 PLN02867 Probable galacturonos 43.4 2.3E+02 0.0049 28.7 10.0 98 31-139 72-175 (535)
53 PF06696 Strep_SA_rep: Strepto 42.8 59 0.0013 20.1 3.8 22 103-124 3-24 (25)
54 PF02185 HR1: Hr1 repeat; Int 42.7 61 0.0013 23.1 4.6 30 99-128 34-63 (70)
55 PF11471 Sugarporin_N: Maltopo 42.1 49 0.0011 23.9 4.0 27 102-128 29-55 (60)
56 KOG4098 Molecular chaperone Pr 41.5 51 0.0011 27.9 4.5 61 59-119 48-114 (140)
57 cd04772 HTH_TioE_rpt1 First He 41.3 61 0.0013 24.6 4.6 24 98-121 76-99 (99)
58 PF04102 SlyX: SlyX; InterPro 41.1 38 0.00082 24.5 3.3 24 100-123 27-50 (69)
59 PF06295 DUF1043: Protein of u 41.1 33 0.00071 27.6 3.2 25 105-129 25-49 (128)
60 PRK09413 IS2 repressor TnpA; R 41.0 69 0.0015 25.0 5.0 28 100-127 80-107 (121)
61 PF05983 Med7: MED7 protein; 40.8 1E+02 0.0022 25.9 6.3 29 97-125 130-158 (162)
62 KOG3397 Acetyltransferases [Ge 40.7 30 0.00065 31.0 3.2 19 73-95 126-144 (225)
63 PF12325 TMF_TATA_bd: TATA ele 40.1 52 0.0011 26.7 4.3 32 96-127 14-45 (120)
64 PF12001 DUF3496: Domain of un 39.5 54 0.0012 26.6 4.2 29 102-130 4-40 (111)
65 PF14282 FlxA: FlxA-like prote 38.5 52 0.0011 25.7 3.9 25 100-124 53-77 (106)
66 PHA03369 capsid maturational p 38.3 2.8E+02 0.006 28.8 9.8 18 102-119 333-350 (663)
67 PHA02047 phage lambda Rz1-like 37.4 73 0.0016 25.7 4.6 24 104-127 33-56 (101)
68 PHA02562 46 endonuclease subun 36.7 52 0.0011 31.2 4.4 8 73-80 151-158 (562)
69 PF04420 CHD5: CHD5-like prote 36.6 52 0.0011 27.4 3.9 32 96-127 64-95 (161)
70 PF06818 Fez1: Fez1; InterPro 36.5 56 0.0012 29.0 4.2 31 97-127 9-39 (202)
71 PLN02718 Probable galacturonos 36.5 1.8E+02 0.004 29.8 8.2 59 73-139 222-280 (603)
72 PF07716 bZIP_2: Basic region 35.2 92 0.002 21.2 4.3 26 100-125 27-52 (54)
73 PF03242 LEA_3: Late embryogen 35.0 13 0.00028 29.1 0.1 20 82-101 58-77 (93)
74 PF01608 I_LWEQ: I/LWEQ domain 34.7 97 0.0021 26.3 5.2 32 78-120 116-147 (152)
75 PF05565 Sipho_Gp157: Siphovir 34.6 71 0.0015 26.5 4.4 58 62-123 13-72 (162)
76 PRK11677 hypothetical protein; 34.5 47 0.001 27.5 3.2 26 100-125 31-56 (134)
77 PF11471 Sugarporin_N: Maltopo 34.4 72 0.0016 23.0 3.8 27 99-125 33-59 (60)
78 PF10883 DUF2681: Protein of u 34.2 1.2E+02 0.0025 23.7 5.1 31 99-129 17-47 (87)
79 PRK00888 ftsB cell division pr 33.9 71 0.0015 25.0 4.0 24 100-123 29-52 (105)
80 PF14282 FlxA: FlxA-like prote 33.6 50 0.0011 25.8 3.1 23 97-119 18-40 (106)
81 PRK11677 hypothetical protein; 33.5 92 0.002 25.8 4.8 24 105-128 29-52 (134)
82 PRK00846 hypothetical protein; 33.4 83 0.0018 23.9 4.2 23 100-122 36-58 (77)
83 PLN02659 Probable galacturonos 32.7 2.1E+02 0.0046 29.0 8.0 57 75-139 115-171 (534)
84 PRK15396 murein lipoprotein; P 32.6 84 0.0018 23.9 4.1 28 99-126 26-53 (78)
85 PRK09039 hypothetical protein; 32.4 75 0.0016 29.6 4.6 24 100-123 139-162 (343)
86 PF08227 DASH_Hsk3: DASH compl 32.3 98 0.0021 21.4 4.0 30 99-128 3-32 (45)
87 PRK04325 hypothetical protein; 32.2 92 0.002 23.1 4.2 24 99-122 31-54 (74)
88 PRK11239 hypothetical protein; 31.9 69 0.0015 28.8 4.0 31 97-127 182-212 (215)
89 PF01213 CAP_N: Adenylate cycl 31.4 16 0.00036 33.9 0.1 8 185-192 261-268 (312)
90 PRK11020 hypothetical protein; 31.4 2.8E+02 0.0061 22.9 7.2 52 73-130 12-63 (118)
91 PF15300 INT_SG_DDX_CT_C: INTS 31.1 46 0.001 24.6 2.4 30 57-86 18-51 (65)
92 PF15483 DUF4641: Domain of un 31.0 52 0.0011 32.5 3.3 31 93-124 414-444 (445)
93 PF14257 DUF4349: Domain of un 30.7 90 0.002 27.2 4.6 34 96-129 160-193 (262)
94 PF09849 DUF2076: Uncharacteri 30.4 1.9E+02 0.0041 26.2 6.7 25 103-127 46-70 (247)
95 PRK14127 cell division protein 29.9 1.1E+02 0.0025 24.5 4.6 30 100-129 39-68 (109)
96 COG5509 Uncharacterized small 29.6 61 0.0013 24.2 2.8 18 100-117 34-51 (65)
97 PRK10963 hypothetical protein; 29.0 1.4E+02 0.0029 26.0 5.3 56 60-124 6-63 (223)
98 smart00338 BRLZ basic region l 28.9 1.4E+02 0.003 20.8 4.5 28 99-126 27-54 (65)
99 PF00170 bZIP_1: bZIP transcri 28.9 1.5E+02 0.0034 20.5 4.7 28 99-126 27-54 (64)
100 PF12325 TMF_TATA_bd: TATA ele 28.9 1E+02 0.0022 25.0 4.2 29 98-126 30-58 (120)
101 PF07334 IFP_35_N: Interferon- 28.4 87 0.0019 24.0 3.5 26 100-125 2-27 (76)
102 PF15397 DUF4618: Domain of un 28.3 83 0.0018 28.9 4.0 56 61-124 52-107 (258)
103 COG3105 Uncharacterized protei 27.7 1E+02 0.0022 26.1 4.1 28 101-128 37-64 (138)
104 PRK14149 heat shock protein Gr 27.6 1.2E+02 0.0026 26.5 4.8 32 98-129 43-74 (191)
105 PRK00451 glycine dehydrogenase 27.2 49 0.0011 30.5 2.4 35 39-74 2-36 (447)
106 PF09789 DUF2353: Uncharacteri 27.2 72 0.0016 30.1 3.5 35 93-127 191-225 (319)
107 cd00584 Prefoldin_alpha Prefol 27.2 1.1E+02 0.0025 23.7 4.2 29 99-127 7-35 (129)
108 PF13600 DUF4140: N-terminal d 27.0 1.1E+02 0.0024 22.9 3.9 24 100-123 79-102 (104)
109 cd00890 Prefoldin Prefoldin is 26.8 1.2E+02 0.0026 23.0 4.2 29 99-127 7-35 (129)
110 TIGR00293 prefoldin, archaeal 26.6 1.3E+02 0.0029 23.2 4.5 29 99-127 7-35 (126)
111 COG3879 Uncharacterized protei 26.4 90 0.0019 28.6 3.9 38 86-125 47-84 (247)
112 PF04340 DUF484: Protein of un 26.1 1.3E+02 0.0027 25.8 4.6 59 60-127 9-69 (225)
113 PRK01203 prefoldin subunit alp 25.9 1.1E+02 0.0024 25.3 4.0 28 99-126 8-35 (130)
114 PF04508 Pox_A_type_inc: Viral 25.8 1E+02 0.0022 18.8 2.8 18 100-117 3-20 (23)
115 PF01690 PLRV_ORF5: Potato lea 25.6 57 0.0012 32.4 2.6 16 178-193 44-59 (465)
116 COG4985 ABC-type phosphate tra 25.5 79 0.0017 29.4 3.3 57 62-125 191-248 (289)
117 PF04728 LPP: Lipoprotein leuc 25.4 2E+02 0.0044 20.8 4.8 27 100-126 5-31 (56)
118 PF10186 Atg14: UV radiation r 25.4 83 0.0018 27.0 3.4 10 22-31 2-11 (302)
119 PF11853 DUF3373: Protein of u 25.4 46 0.001 33.1 2.0 28 99-126 32-59 (489)
120 PF11336 DUF3138: Protein of u 25.3 1.7E+02 0.0037 29.3 5.8 27 104-130 24-50 (514)
121 PRK14161 heat shock protein Gr 25.3 1.3E+02 0.0028 25.9 4.4 30 99-128 27-56 (178)
122 PF05120 GvpG: Gas vesicle pro 25.0 81 0.0018 24.0 2.9 35 92-126 8-42 (79)
123 TIGR01010 BexC_CtrB_KpsE polys 25.0 1E+02 0.0022 28.1 4.0 54 75-128 146-200 (362)
124 PRK14141 heat shock protein Gr 24.8 1.3E+02 0.0028 26.7 4.5 30 99-128 39-68 (209)
125 TIGR00293 prefoldin, archaeal 24.5 1.1E+02 0.0023 23.8 3.5 28 101-128 2-29 (126)
126 PRK13922 rod shape-determining 24.2 1.5E+02 0.0033 25.9 4.9 27 99-125 70-96 (276)
127 TIGR02894 DNA_bind_RsfA transc 24.2 1.2E+02 0.0025 26.3 4.0 28 99-126 112-139 (161)
128 PF10737 GerPC: Spore germinat 24.2 59 0.0013 28.2 2.2 21 100-120 1-21 (176)
129 TIGR03017 EpsF chain length de 24.0 1.1E+02 0.0025 28.2 4.2 33 96-128 169-201 (444)
130 PF04706 Dickkopf_N: Dickkopf 23.7 35 0.00076 24.1 0.6 16 20-35 21-36 (52)
131 PRK14147 heat shock protein Gr 23.7 1.4E+02 0.0031 25.4 4.5 31 99-129 26-56 (172)
132 PRK09973 putative outer membra 23.6 1.6E+02 0.0035 22.9 4.3 28 99-126 25-52 (85)
133 PF04999 FtsL: Cell division p 23.6 1.6E+02 0.0035 21.8 4.3 28 100-127 44-71 (97)
134 PF12718 Tropomyosin_1: Tropom 23.5 1.3E+02 0.0028 24.8 4.0 29 99-127 36-64 (143)
135 PF04012 PspA_IM30: PspA/IM30 23.5 2.1E+02 0.0045 24.2 5.4 11 60-70 12-22 (221)
136 PF01025 GrpE: GrpE; InterPro 23.5 1.6E+02 0.0036 23.6 4.6 28 100-127 20-47 (165)
137 cd04785 HTH_CadR-PbrR-like Hel 23.3 3.7E+02 0.008 21.0 7.4 22 97-118 78-99 (126)
138 COG3416 Uncharacterized protei 23.3 3.4E+02 0.0074 24.8 6.8 30 101-130 44-73 (233)
139 PF08826 DMPK_coil: DMPK coile 23.0 2.6E+02 0.0055 20.4 5.0 31 77-118 29-59 (61)
140 PF00172 Zn_clus: Fungal Zn(2) 23.0 49 0.0011 21.3 1.2 15 20-34 1-15 (40)
141 KOG3478 Prefoldin subunit 6, K 23.0 2.6E+02 0.0057 23.2 5.6 30 99-128 84-113 (120)
142 PRK09841 cryptic autophosphory 22.7 1.1E+02 0.0025 30.9 4.2 32 97-128 266-297 (726)
143 cd01109 HTH_YyaN Helix-Turn-He 22.7 1.4E+02 0.0031 22.7 3.9 27 97-123 78-104 (113)
144 PRK14164 heat shock protein Gr 22.6 1.9E+02 0.0041 25.9 5.1 39 90-128 69-107 (218)
145 PF06637 PV-1: PV-1 protein (P 22.6 1.8E+02 0.0038 28.7 5.2 22 108-129 359-380 (442)
146 PF07462 MSP1_C: Merozoite sur 22.4 2.8E+02 0.006 28.5 6.7 13 95-107 218-230 (574)
147 TIGR02231 conserved hypothetic 22.3 1.3E+02 0.0029 29.0 4.4 28 99-126 72-99 (525)
148 PF02050 FliJ: Flagellar FliJ 22.2 2.3E+02 0.005 20.3 4.8 30 97-126 51-80 (123)
149 PRK14127 cell division protein 22.2 1.2E+02 0.0025 24.5 3.4 31 97-127 43-73 (109)
150 PF03955 Adeno_PIX: Adenovirus 22.2 1.5E+02 0.0033 24.1 4.0 29 98-126 76-104 (109)
151 PRK14155 heat shock protein Gr 22.1 1.6E+02 0.0034 26.1 4.5 31 98-128 20-50 (208)
152 PRK14156 heat shock protein Gr 22.0 1.6E+02 0.0035 25.4 4.4 46 74-128 19-64 (177)
153 PRK13169 DNA replication intia 22.0 1.7E+02 0.0037 23.5 4.3 18 101-118 25-42 (110)
154 PRK11519 tyrosine kinase; Prov 21.8 1.2E+02 0.0027 30.6 4.3 31 98-128 267-297 (719)
155 PRK14154 heat shock protein Gr 21.7 1.6E+02 0.0035 26.1 4.5 30 99-128 60-89 (208)
156 PF06005 DUF904: Protein of un 21.7 1.7E+02 0.0038 21.7 4.0 19 95-113 15-33 (72)
157 KOG0242 Kinesin-like protein [ 21.6 1.6E+02 0.0035 30.2 5.0 62 57-118 283-365 (675)
158 PRK14162 heat shock protein Gr 21.6 1.6E+02 0.0036 25.7 4.5 33 97-129 45-77 (194)
159 TIGR02209 ftsL_broad cell divi 21.4 2.2E+02 0.0047 20.4 4.5 30 100-129 26-55 (85)
160 PF06156 DUF972: Protein of un 21.2 1.8E+02 0.0039 23.1 4.3 29 98-126 22-50 (107)
161 PRK14153 heat shock protein Gr 21.1 1.7E+02 0.0037 25.6 4.5 30 99-128 41-70 (194)
162 PF04697 Pinin_SDK_N: pinin/SD 21.0 1.3E+02 0.0029 25.3 3.6 31 99-129 4-34 (134)
163 PRK14157 heat shock protein Gr 21.0 1.7E+02 0.0036 26.5 4.5 33 96-128 82-114 (227)
164 PF13863 DUF4200: Domain of un 21.0 1.7E+02 0.0037 22.4 4.0 58 63-126 52-109 (126)
165 PF05546 She9_MDM33: She9 / Md 20.9 3.9E+02 0.0085 23.9 6.7 51 78-130 14-64 (207)
166 PRK14626 hypothetical protein; 20.9 1.6E+02 0.0035 23.4 4.0 29 98-126 5-33 (110)
167 PRK14151 heat shock protein Gr 20.9 1.8E+02 0.0038 25.0 4.5 31 98-128 27-57 (176)
168 PRK10884 SH3 domain-containing 20.9 1.6E+02 0.0035 25.7 4.3 27 100-126 134-160 (206)
169 COG0576 GrpE Molecular chapero 20.7 1.9E+02 0.0041 25.0 4.6 31 98-128 43-73 (193)
170 PRK03100 sec-independent trans 20.7 5.1E+02 0.011 21.7 7.2 18 54-71 18-35 (136)
171 PRK06798 fliD flagellar cappin 20.6 1.8E+02 0.004 28.0 5.0 28 98-125 379-406 (440)
172 PF07820 TraC: TraC-like prote 20.6 2.1E+02 0.0046 22.7 4.4 27 100-126 4-30 (92)
173 PF12808 Mto2_bdg: Micro-tubul 20.6 3.2E+02 0.007 19.4 5.7 42 76-118 8-49 (52)
174 cd04776 HTH_GnyR Helix-Turn-He 20.6 1.7E+02 0.0036 23.0 4.0 25 100-124 89-113 (118)
175 PF15357 SEEK1: Psoriasis susc 20.6 77 0.0017 26.5 2.1 70 118-197 72-141 (149)
176 PF05190 MutS_IV: MutS family 20.3 2.2E+02 0.0048 20.0 4.3 29 95-123 1-29 (92)
177 PF11387 DUF2795: Protein of u 20.3 1.3E+02 0.0028 20.1 2.8 32 42-73 6-37 (44)
178 COG0255 RpmC Ribosomal protein 20.1 1.5E+02 0.0032 22.1 3.4 24 107-130 13-36 (69)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=9.4e-51 Score=315.77 Aligned_cols=101 Identities=63% Similarity=1.114 Sum_probs=99.6
Q ss_pred CChhhHHhhhcCCCCCCCCCCCCCCchhHHHHHHHhhchhhHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHH
Q 028221 21 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAI 100 (212)
Q Consensus 21 ~CAACK~qRRkC~~dCilAPYFPad~~q~Fa~vhKvFG~sNV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI 100 (212)
+|||||||||||++||+||||||++++++|++||||||++||+|||+++++++|+|+|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028221 101 SSLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL 121 (212)
+.|||||+++++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999886
No 2
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.0019 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 028221 105 QQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 105 ~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
++|..||.||..+|+||++....
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~ 144 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAA 144 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888888888888887763
No 3
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=95.92 E-value=0.018 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 028221 96 CLGAISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~v 117 (212)
...-|..||.+|..|++||+.+
T Consensus 120 AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999985
No 4
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.86 E-value=0.25 Score=44.31 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=58.6
Q ss_pred hHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 61 NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 61 NV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
|++.-|+......|++.++.||-|+-.+.-|--|=-+-.|..+++-|+.++.+|+.++.+|+.....+
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~ 78 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE 78 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44455667777789999999999999999999999999999999999999999999999988766654
No 5
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=88.48 E-value=4 Score=36.85 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=56.3
Q ss_pred hHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 61 NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 61 NV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+++.-|+.+....|+.-++.||-|.-.|.=|=+|=-+-.|..+++=|++++++|+.++.+|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444557777777898999999999999999999999999999999999999999999999876
No 6
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=86.60 E-value=1.4 Score=30.82 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|..|.+|+..|+.+|..+++.+..|+--
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999998864
No 7
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=86.44 E-value=0.84 Score=42.25 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 028221 110 LQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 110 lqaEL~~vr~eL~~yr~q~a 129 (212)
++.-+..+ .+|..|..++.
T Consensus 185 vks~~~l~-~~L~~YVke~h 203 (312)
T PF01213_consen 185 VKSFKALL-KELQAYVKEHH 203 (312)
T ss_dssp HHHHHHHH-HHHHHHHHHHS
T ss_pred HHHHHHHH-HHHHHHHHHhC
Confidence 33334443 46777766655
No 8
>PLN02523 galacturonosyltransferase
Probab=85.71 E-value=4.9 Score=40.38 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHhcCCCc--chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 64 KLLSEVPDS--QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 64 kmL~~lp~~--qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
..|++|+.+ +|..+|+.++++|.. .|-|..+|.+|+..|..+++++...+.|-..+.+-.| .-+|-+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa----~t~PK~ 213 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAA----KSIPKS 213 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCC
Confidence 345667654 678899999999983 4557789999999999999999999988876655444 667776
No 9
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=84.16 E-value=2.5 Score=41.56 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Q 028221 107 VQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 107 I~~lqaEL~~vr~eL~~yr~q~a 129 (212)
++=+++-|+.. .+|..|.-++.
T Consensus 186 veWvKa~l~l~-~eL~~YVk~hh 207 (480)
T KOG2675|consen 186 VEWVKAYLALF-LELQAYVKEHH 207 (480)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhc
Confidence 33355555544 34777777665
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.67 E-value=5.8 Score=41.91 Aligned_cols=7 Identities=14% Similarity=0.429 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 028221 77 AANSLVF 83 (212)
Q Consensus 77 a~~SLvY 83 (212)
++.-||.
T Consensus 431 cISqIvl 437 (1102)
T KOG1924|consen 431 CISQIVL 437 (1102)
T ss_pred HHHHHHH
Confidence 3333333
No 11
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=83.60 E-value=2 Score=33.16 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 95 GCLGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 95 GC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-.+++|..|-.||+++++|+..++++|..|..
T Consensus 68 ~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 68 PGIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34889999999999999999999999998865
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=82.41 E-value=2 Score=45.24 Aligned_cols=6 Identities=67% Similarity=0.678 Sum_probs=2.2
Q ss_pred HHHHHH
Q 028221 110 LQAELN 115 (212)
Q Consensus 110 lqaEL~ 115 (212)
.|+||.
T Consensus 493 ~qael~ 498 (1102)
T KOG1924|consen 493 AQAELQ 498 (1102)
T ss_pred HHHHHH
Confidence 333333
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=80.96 E-value=4 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
|-.|+..|..|++|++.+++++..-+..-+|
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999987776554
No 14
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=80.19 E-value=5.7 Score=30.35 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=50.1
Q ss_pred CchhHHHHHHHhhchhhHHHHHhcCCCcc--hHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 028221 45 HEPQKFAAVHKVFGASNVSKLLSEVPDSQ--RADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAEL 114 (212)
Q Consensus 45 d~~q~Fa~vhKvFG~sNV~kmL~~lp~~q--R~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL 114 (212)
++|+.|....+ .-+-.++...+++. |-.++.+-|=---.|.++|+..|+-+...++.++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888887643 34667888888775 44455555555567889999999999999999998887665
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.47 E-value=1.5 Score=36.10 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=47.8
Q ss_pred hhHHHHHHHhhchhhHHHHHhcCCCcch---HHHHHHHHHHHhhhcCCCCCch-----hHHHHHHHHHHHHHHHHHHHHH
Q 028221 47 PQKFAAVHKVFGASNVSKLLSEVPDSQR---ADAANSLVFEANLRLRDPVYGC-----LGAISSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 47 ~q~Fa~vhKvFG~sNV~kmL~~lp~~qR---~da~~SLvYEA~aR~rDPVyGC-----~GiI~~Lq~QI~~lqaEL~~vr 118 (212)
..-|.|+|+-||-..|.|.|..|-.+.+ ...=+..||=++--.-+-+..- =.-|..|+.|+..++.++..++
T Consensus 20 ~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 20 QDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999998865433 1233445565543332211111 1235556666666666666666
Q ss_pred HHHHhhhh
Q 028221 119 TEIMKYKY 126 (212)
Q Consensus 119 ~eL~~yr~ 126 (212)
.+|.....
T Consensus 100 ~eL~~L~~ 107 (169)
T PF07106_consen 100 AELASLSS 107 (169)
T ss_pred HHHHHHhc
Confidence 55555444
No 16
>PLN02742 Probable galacturonosyltransferase
Probab=72.87 E-value=15 Score=36.79 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 72 SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 72 ~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
+++...|+.++++|.-- -|.|--+|.+|++.|+.+|+|+...+.|-..+.+-+| .-+|-+
T Consensus 132 ~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa----~t~PK~ 191 (534)
T PLN02742 132 EPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAA----EALPKS 191 (534)
T ss_pred HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCC
Confidence 35778899999998654 3569999999999999999999999888876655444 667776
No 17
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=68.79 E-value=5.5 Score=38.19 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~e 120 (212)
.|.+||+||++||+||+.++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999998766
No 18
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.16 E-value=7.6 Score=34.63 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
..+..|++||+.++.|+..+|.+|+...++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~ 83 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQ 83 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467899999999999999999988876654
No 19
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=68.03 E-value=5 Score=31.26 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~e 120 (212)
.-.|..|...|..||+||+++|.+
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788888899999999888753
No 20
>PRK00295 hypothetical protein; Provisional
Probab=65.32 E-value=12 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+|...|++|..++.+|..+..+|..
T Consensus 27 ~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 27 VLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444443
No 21
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=63.75 E-value=16 Score=27.23 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
+-.|.+.|..||+|++.+++|+.+-+..-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~srs 56 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKASRS 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 456778888888888888888887665433
No 22
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=62.89 E-value=25 Score=27.31 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|-..+..++.+|+..+++|+.++++|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888899999999998888865
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.57 E-value=17 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
..+.+++++.+++.|++.++.|++..
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667788888888888888877653
No 24
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=62.09 E-value=34 Score=31.30 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=38.8
Q ss_pred HHHhhch--hhHHHHHhcCCCc-chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 028221 53 VHKVFGA--SNVSKLLSEVPDS-QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 53 vhKvFG~--sNV~kmL~~lp~~-qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~v 117 (212)
+-++|-. .-+.+||+-+++. +|+.+|+.|--+-+.|. ..|.+||.++..++.-|..+
T Consensus 48 il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtta 107 (272)
T KOG4552|consen 48 ILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTTA 107 (272)
T ss_pred HHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3444432 2345566666654 58899999876666663 46999999999887766654
No 25
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=60.55 E-value=33 Score=31.15 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=35.9
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 89 LRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 89 ~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
..-|+-|.-..|..|.++.+.+..+|+.++++++..+.|-.
T Consensus 171 ~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 171 NVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34499999999999999999999999999999998777644
No 26
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.01 E-value=23 Score=25.64 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
-|+.|+.+|.+|+.++..+|.++..-+. ||+
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~-EAa 41 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKE-EAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3677888888888888888877764333 444
No 27
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=58.75 E-value=18 Score=26.81 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 91 DPVYGCLGAISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 91 DPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
-++-| +..|..|..|++.+++||+.++++|.
T Consensus 59 ~~l~~-i~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 59 VNLAG-VKRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444 34455699999999999999988774
No 28
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=57.70 E-value=65 Score=33.24 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=50.1
Q ss_pred cCCC--cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 68 EVPD--SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 68 ~lp~--~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
+||+ .++..+|.-++++|. +=-+.|--++.+|++.|+.+++|+...+.|-..+.+-+| .-+|-+
T Consensus 247 dlp~~~~~k~~~M~~~l~~ak----~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa----~t~PK~ 312 (657)
T PLN02910 247 ELHSSALDQAKAMGHVLSIAK----DQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAA----KTVPKP 312 (657)
T ss_pred ccCchHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCC
Confidence 4444 357788999998885 445789999999999999999999999988876655444 566666
No 29
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=57.22 E-value=13 Score=27.68 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~ 119 (212)
+++|.+|-.||+.+++||..+++
T Consensus 62 i~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 62 IALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 78999999999999999998763
No 30
>PHA01732 proline-rich protein
Probab=56.97 E-value=13 Score=29.53 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=3.0
Q ss_pred CCCCccc
Q 028221 184 SSVSSLY 190 (212)
Q Consensus 184 ~~~~~~~ 190 (212)
+.++||-
T Consensus 62 ~gTasLr 68 (94)
T PHA01732 62 GGTASLR 68 (94)
T ss_pred cCcceeE
Confidence 3444443
No 31
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.28 E-value=25 Score=24.67 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
|..|+.+++.++++...++.++...
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555554
No 32
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=54.49 E-value=16 Score=36.11 Aligned_cols=10 Identities=10% Similarity=0.378 Sum_probs=4.4
Q ss_pred HHHHHHHhhh
Q 028221 79 NSLVFEANLR 88 (212)
Q Consensus 79 ~SLvYEA~aR 88 (212)
+.+++-|..|
T Consensus 90 R~~L~~A~q~ 99 (480)
T KOG2675|consen 90 RAFLWVASQK 99 (480)
T ss_pred HHHHHHHHhc
Confidence 3444444444
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.79 E-value=34 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
..+..++++++.++.+++.++.+....+.+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888777776654
No 34
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.62 E-value=25 Score=25.97 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+|...|++|..++.+|..+..+|..
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555443
No 35
>PLN02769 Probable galacturonosyltransferase
Probab=52.99 E-value=84 Score=32.30 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 73 QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
++...|..+++.|..- -|.|..++.+|++.|+..|+|+...+.|-+.+ +|-|| .-+|-+
T Consensus 239 ~~~~~m~~~~~~ak~~----~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l-~~laa---~t~PK~ 297 (629)
T PLN02769 239 KKLEKMEQTIARAKSC----PVDCNNVDRKLRQILDMTEDEAHFHMKQSAFL-YQLGV---QTMPKS 297 (629)
T ss_pred HHHHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---hhcCCC
Confidence 5677888888877655 45699999999999999999999776655533 35555 666766
No 36
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=52.71 E-value=25 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|-+|+.+.++++.|.+.+.+|+.+|+-+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777777654
No 37
>PLN02829 Probable galacturonosyltransferase
Probab=52.36 E-value=48 Score=34.10 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 72 SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 72 ~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
..+...|+.++++|.-- -+.|--++.+|++.|..+++|+...+.|-..+.+-+| .-+|-+
T Consensus 239 ~~~~~~m~~~i~~ak~~----~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa----~t~PK~ 298 (639)
T PLN02829 239 NEKLKAMEQTLAKGKQM----QDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTA----KTLPKG 298 (639)
T ss_pred HHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCCC
Confidence 35778999999988543 4789999999999999999999999888776655444 667766
No 38
>PRK00736 hypothetical protein; Provisional
Probab=52.26 E-value=28 Score=25.42 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|-.|...|-.-+.+|..++.+|.....
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 39
>PRK02119 hypothetical protein; Provisional
Probab=51.48 E-value=28 Score=25.78 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
|...|++|..++.+|..+..+|.
T Consensus 32 v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 32 LIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444443
No 40
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=50.41 E-value=34 Score=25.73 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-.+..|+.+|+.++.+++.++.++...+.+.
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888887766543
No 41
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=50.01 E-value=30 Score=34.45 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
.-.|..||.||+.||.|++++|.+|+.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888888888888888877764
No 42
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.67 E-value=30 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 028221 106 QVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 106 QI~~lqaEL~~vr~eL~~yr~ 126 (212)
+++.++++.+.++.|+...+.
T Consensus 42 e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 42 TNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 333444444444555555544
No 43
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.28 E-value=32 Score=30.94 Aligned_cols=53 Identities=28% Similarity=0.507 Sum_probs=27.2
Q ss_pred HHHhhchhhHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 53 VHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 53 vhKvFG~sNV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+||+||+.| ...|+..=.++..++ +.|. -.+..+|.+|.+||...+.||.+.|
T Consensus 1 MnRiFG~~k-----~k~p~psL~dai~~v----~~r~-----------dSve~KIskLDaeL~k~~~Qi~k~R 53 (218)
T KOG1655|consen 1 MNRIFGRGK-----PKEPPPSLQDAIDSV----NKRS-----------DSVEKKISKLDAELCKYKDQIKKTR 53 (218)
T ss_pred CcccccCCC-----CCCCChhHHHHHHHH----HHhh-----------hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 378999876 234443334455544 3331 1234455555555555555555444
No 44
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.33 E-value=33 Score=28.87 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHHhhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 72 SQRADAANSLVFEANLRLRDP--VYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 72 ~qR~da~~SLvYEA~aR~rDP--VyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
.||..+.+-==|.+++|.+-= -..-=--=..|++||+.|..|+..++.|+..|+..--+
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777778888883210 00000011357888899999999999999888875443
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.19 E-value=36 Score=25.10 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 95 GCLGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 95 GC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|...-+......+..|++|++.++.+|..++.
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455556667788888888888888877654
No 46
>smart00338 BRLZ basic region leucin zipper.
Probab=47.12 E-value=47 Score=23.19 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
-|..|+.++..|+.++..++.++..++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 47
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.34 E-value=42 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.-|..++++++++++|-..++.|+.....
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566777777777777777777766554
No 48
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=46.10 E-value=19 Score=35.64 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 91 DPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 91 DPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.|...-.--|..|| ||++|++||+.+++|+.....
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 33333334444555 888888888888888764433
No 49
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.72 E-value=38 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
..+|+++|++.+.||+.-|+++..|-..
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ 54 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665555554443
No 50
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=44.28 E-value=62 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|.+...+.++......|+.++.+|..|..
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888889999988888753
No 51
>PRK04406 hypothetical protein; Provisional
Probab=44.09 E-value=41 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL 121 (212)
|...|++|..++.+|..+..+|
T Consensus 34 v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 34 LSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 52
>PLN02867 Probable galacturonosyltransferase
Probab=43.35 E-value=2.3e+02 Score=28.73 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=64.4
Q ss_pred cCCC--CCCCCCCCCC-CchhHHH-HHHHhhchhhHHHHHhcCCC--cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 028221 31 RCAE--ECPFSPYFSP-HEPQKFA-AVHKVFGASNVSKLLSEVPD--SQRADAANSLVFEANLRLRDPVYGCLGAISSLQ 104 (212)
Q Consensus 31 kC~~--dCilAPYFPa-d~~q~Fa-~vhKvFG~sNV~kmL~~lp~--~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq 104 (212)
+|+. ||.=.-.|-. +...++. .+.|+.|..+- .+.++. +++.++|+-+++|+.- =-|-|.-++.+|+
T Consensus 72 ~c~s~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~~~~kl~ 144 (535)
T PLN02867 72 ACNSPLDCIGLRLFGGSDTSLKLREELTRALVEAKE---QDDGGRGTKGSTESFNDLVKEMTS----NRQDIKAFAFRTK 144 (535)
T ss_pred cCCccccccchhhhcCCCchhHHHHHHHHHHHHhhh---ccccCcchhhhhhHHHHHHHHHHh----ccchHHHHHHHHH
Confidence 4544 6654444432 2233333 24455554222 222332 3688999999999965 3467999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 105 QQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 105 ~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
..++.+|+++...+.|-..+.+-+| .-+|-+
T Consensus 145 am~~~~e~~~~~~~~~~~~~~~laa----~t~PK~ 175 (535)
T PLN02867 145 AMLLKMERKVQSARQRESIYWHLAS----HGIPKS 175 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCC
Confidence 9999999999999988776655444 667776
No 53
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=42.78 E-value=59 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028221 103 LQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 103 Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
.|..+.+-|+||+.++.+++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4667888889999998887654
No 54
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=42.70 E-value=61 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
+....+.+|...+..|+.++.+|..|+...
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666777777777777777766543
No 55
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=42.07 E-value=49 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 102 SLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.++++|+.|+++|..+++++..+..+.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777766666655543
No 56
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=41.51 E-value=51 Score=27.91 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=40.2
Q ss_pred hhhHHHHHhcCCCcchH------HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 028221 59 ASNVSKLLSEVPDSQRA------DAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 59 ~sNV~kmL~~lp~~qR~------da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~ 119 (212)
.+-|++.|+++++.+|- -++..-|-|.---+..-.-|--++|..|..|+.+...||+.-+.
T Consensus 48 H~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~ 114 (140)
T KOG4098|consen 48 HKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKK 114 (140)
T ss_pred HHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577788888877652 23333333433344555567788888888888888888888753
No 57
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=41.35 E-value=61 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL 121 (212)
.....|+.+++.++++++.++++|
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~~ 99 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQEL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556777888888888888776653
No 58
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.12 E-value=38 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|...+++|..++.+|..+..+|..
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444444
No 59
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.07 E-value=33 Score=27.61 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 105 QQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 105 ~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
++..+++.||+.++.||..||..-.
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~ 49 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVN 49 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999988533
No 60
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.02 E-value=69 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|..|+.++.+++.|++.++..+..++..
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 4445555555555555555554444443
No 61
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=40.78 E-value=1e+02 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
--+|..|+.||++-+++++.++..+...+
T Consensus 130 etLi~~me~Ql~~kr~~i~~i~~~~~~~~ 158 (162)
T PF05983_consen 130 ETLIMMMEEQLEEKREEIEEIRKVCEKAR 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999988776543
No 62
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=40.74 E-value=30 Score=30.96 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=9.5
Q ss_pred chHHHHHHHHHHHhhhcCCCCCc
Q 028221 73 QRADAANSLVFEANLRLRDPVYG 95 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~rDPVyG 95 (212)
+....-.+|=||= -|||-|
T Consensus 126 DQ~~FYe~lGYe~----c~Pi~~ 144 (225)
T KOG3397|consen 126 DQCRFYESLGYEK----CDPIVH 144 (225)
T ss_pred cchhhhhhhcccc----cCceec
Confidence 3334445555553 356665
No 63
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.09 E-value=52 Score=26.67 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
-+++|..|+.+|.+++.|+..++.+|.....+
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777665443
No 64
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=39.53 E-value=54 Score=26.58 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHhhhhHHHH
Q 028221 102 SLQQQVQSLQAELNAMR--------TEIMKYKYREAA 130 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr--------~eL~~yr~q~aA 130 (212)
+++..|.+|+.||..++ .||++|+..-+.
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~e 40 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLE 40 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHH
Confidence 55666777777776665 789999986543
No 65
>PF14282 FlxA: FlxA-like protein
Probab=38.48 E-value=52 Score=25.66 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+..||.||..|+++|..++.+...-
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555443
No 66
>PHA03369 capsid maturational protease; Provisional
Probab=38.30 E-value=2.8e+02 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028221 102 SLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~ 119 (212)
+|-+.|+.+|+.++.+++
T Consensus 333 ~~F~~Inglkah~eil~t 350 (663)
T PHA03369 333 KLFSTINGLKAHNEILKT 350 (663)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344555555555555443
No 67
>PHA02047 phage lambda Rz1-like protein
Probab=37.42 E-value=73 Score=25.66 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 104 QQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 104 q~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
++..+++.++|+.++.++..|..+
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~ 56 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRH 56 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666655544
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.66 E-value=52 Score=31.15 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.2
Q ss_pred chHHHHHH
Q 028221 73 QRADAANS 80 (212)
Q Consensus 73 qR~da~~S 80 (212)
.|...+..
T Consensus 151 er~~il~~ 158 (562)
T PHA02562 151 ARRKLVED 158 (562)
T ss_pred hHHHHHHH
Confidence 34444433
No 69
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.65 E-value=52 Score=27.37 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
=+.--.+|+++++++++||+..++++...+..
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666789999999999999999998887664
No 70
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.53 E-value=56 Score=29.01 Aligned_cols=31 Identities=39% Similarity=0.497 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.|-|+-|++|+...++|++.=-++|...|.+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6899999999999999998777777776664
No 71
>PLN02718 Probable galacturonosyltransferase
Probab=36.45 E-value=1.8e+02 Score=29.82 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 73 QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
++...|..+++.|. +=-+.|-.++.+|++.|...++|+...+.|-..+.+-+| .-+|-+
T Consensus 222 ~~~~~m~~~~~~a~----~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa----~~~PK~ 280 (603)
T PLN02718 222 QRMKSMEVTLYKAS----RVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAA----RTTPKG 280 (603)
T ss_pred HHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCC
Confidence 56778888888764 445679999999999999999999999888776655443 667776
No 72
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.15 E-value=92 Score=21.18 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+..|+.+|..|+.+...++.+|....
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777766543
No 73
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=34.99 E-value=13 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=15.9
Q ss_pred HHHHhhhcCCCCCchhHHHH
Q 028221 82 VFEANLRLRDPVYGCLGAIS 101 (212)
Q Consensus 82 vYEA~aR~rDPVyGC~GiI~ 101 (212)
-.|-..|.+|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 55668899999999987544
No 74
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=34.66 E-value=97 Score=26.30 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 78 ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 78 ~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~e 120 (212)
.+.+.+|++.+ |..|+++|+..+..|..+|.+
T Consensus 116 ~k~~eMe~Qv~-----------iL~lE~eLe~ar~kL~~lRk~ 147 (152)
T PF01608_consen 116 AKRQEMEAQVR-----------ILKLEKELEKARKKLAELRKA 147 (152)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665 666666666666666665544
No 75
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=34.64 E-value=71 Score=26.52 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=39.9
Q ss_pred HHHHHhc--CCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 62 VSKLLSE--VPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 62 V~kmL~~--lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+..++.+ ++++.-.|++++| .....|-+-|++.+|..++-.++.+++|...++..-..
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i----~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~ 72 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESI----EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKS 72 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 3444455666553 44556788899999999999999888888877554433
No 76
>PRK11677 hypothetical protein; Provisional
Probab=34.49 E-value=47 Score=27.54 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
...|++||++.+.||+.-|+|+..+=
T Consensus 31 q~~le~eLe~~k~ele~YkqeV~~HF 56 (134)
T PRK11677 31 QQALQYELEKNKAELEEYRQELVSHF 56 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 77
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.42 E-value=72 Score=23.01 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.+-.|+++|+..+.++...+.++..|+
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366788889999999999998888775
No 78
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=34.15 E-value=1.2e+02 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
++.-+.||+.+++.|++.+++|....+...+
T Consensus 17 i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 17 ILAYLWWKVKKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678888888888888777776665443
No 79
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.92 E-value=71 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+.++++|++.+++|++.++++...
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 80
>PF14282 FlxA: FlxA-like protein
Probab=33.57 E-value=50 Score=25.76 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~ 119 (212)
-..|..|+.||..|+.+|..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666666655543
No 81
>PRK11677 hypothetical protein; Provisional
Probab=33.52 E-value=92 Score=25.84 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 105 QQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 105 ~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
++...++.||+.++.+|..|+.+-
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV 52 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQEL 52 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999864
No 82
>PRK00846 hypothetical protein; Provisional
Probab=33.44 E-value=83 Score=23.95 Aligned_cols=23 Identities=0% Similarity=-0.023 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
|...+++|..++.+|..+..+|.
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 83
>PLN02659 Probable galacturonosyltransferase
Probab=32.72 E-value=2.1e+02 Score=28.95 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221 75 ADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS 139 (212)
Q Consensus 75 ~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~ 139 (212)
.|.++-|+.|+.- =-|-|--++.+|++.|+.+|+|+...|.+-..|++-+| .-+|-+
T Consensus 115 ~~~~~~~~~~~~~----~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa----~t~PK~ 171 (534)
T PLN02659 115 PQTLEEFMDEVKN----SRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVAS----SSIPKQ 171 (534)
T ss_pred chHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCCC
Confidence 5899999999854 34779999999999999999999988777755544333 556766
No 84
>PRK15396 murein lipoprotein; Provisional
Probab=32.59 E-value=84 Score=23.93 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-|-+|+.||+.|+.+.+.++..+...+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777666665554
No 85
>PRK09039 hypothetical protein; Validated
Probab=32.37 E-value=75 Score=29.58 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|..|++||+.|+.+|+.++.+|.-
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444443
No 86
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=32.34 E-value=98 Score=21.43 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-+.+|..|+++|++-|....++|.+.-.|.
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~ 32 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQA 32 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467899999999999999988888765543
No 87
>PRK04325 hypothetical protein; Provisional
Probab=32.19 E-value=92 Score=23.06 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
+|...|++|..++.+|..+..+|.
T Consensus 31 vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 31 TVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444
No 88
>PRK11239 hypothetical protein; Provisional
Probab=31.92 E-value=69 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.+.+..|+.+|..|++|++.++++|.....+
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999999998877654
No 89
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=31.37 E-value=16 Score=33.88 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=0.0
Q ss_pred CCCccccC
Q 028221 185 SVSSLYTP 192 (212)
Q Consensus 185 ~~~~~~~~ 192 (212)
+-+.||..
T Consensus 261 ~~~AlFae 268 (312)
T PF01213_consen 261 GMSALFAE 268 (312)
T ss_dssp --------
T ss_pred cHHHHHHH
Confidence 44555553
No 90
>PRK11020 hypothetical protein; Provisional
Probab=31.37 E-value=2.8e+02 Score=22.95 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 73 QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
+|-|+.+--.-.|..| |-..+|.++..+++.+..||+.++++=..-...++.
T Consensus 12 drLD~~~~Klaaa~~r------gd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~ 63 (118)
T PRK11020 12 DRLDAIRHKLAAASLR------GDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQ 63 (118)
T ss_pred HHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666 667899999999999999999997665544444443
No 91
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=31.06 E-value=46 Score=24.58 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=25.1
Q ss_pred hch--hhHHHHHhcC--CCcchHHHHHHHHHHHh
Q 028221 57 FGA--SNVSKLLSEV--PDSQRADAANSLVFEAN 86 (212)
Q Consensus 57 FG~--sNV~kmL~~l--p~~qR~da~~SLvYEA~ 86 (212)
||. +.|.++|+.+ +.+.|...+..++.||.
T Consensus 18 pGr~ye~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 18 PGRNYEKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred cCCcHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 553 5799999988 57789999999999994
No 92
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=30.99 E-value=52 Score=32.47 Aligned_cols=31 Identities=29% Similarity=0.570 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 93 VYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 93 VyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+-||-.-| .||++|++|++||.+++.-..++
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45676665 48999999999999998776665
No 93
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.71 E-value=90 Score=27.22 Aligned_cols=34 Identities=6% Similarity=0.251 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
-+.-|..++++|.+++.||+.++.++..+..+-+
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677899999999999999999999988877654
No 94
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=30.45 E-value=1.9e+02 Score=26.21 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 103 LQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 103 Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|-|-|--.|+.|+.++++|+....+
T Consensus 46 laQ~vlvQE~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 46 LAQTVLVQEQALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 95
>PRK14127 cell division protein GpsB; Provisional
Probab=29.89 E-value=1.1e+02 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
+-.|..++..|++|+..++.+|..|..+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334566666777777777777776666544
No 96
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.63 E-value=61 Score=24.19 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~v 117 (212)
|-.||.+|+++++||+.-
T Consensus 34 IalLq~EIeRlkAe~~kK 51 (65)
T COG5509 34 IALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 777888888888888764
No 97
>PRK10963 hypothetical protein; Provisional
Probab=28.97 E-value=1.4e+02 Score=26.00 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=37.3
Q ss_pred hhHHHHHhcCCC--cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 60 SNVSKLLSEVPD--SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 60 sNV~kmL~~lp~--~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
..|...|++=|+ .++.|.+. ..++-.|..| .|+-.++|++.+++++..++.+|...
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~------~L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVE------QMRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHH------hccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777664 46677775 5567777555 67777777777777777776666543
No 98
>smart00338 BRLZ basic region leucin zipper.
Probab=28.95 E-value=1.4e+02 Score=20.78 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.|..|+.+++.|+.+...++.++.....
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777666665544
No 99
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.88 E-value=1.5e+02 Score=20.54 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.|..|+.++..|+.+...++.++..+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776666665554
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.85 E-value=1e+02 Score=25.00 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|-|..|+++|..++.+-+.+++||...-.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899998888888888888876544
No 101
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=28.42 E-value=87 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
|..|+++..+|+.||..+.++|..-+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777888777777766533
No 102
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.35 E-value=83 Score=28.86 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=34.9
Q ss_pred hHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 61 NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 61 NV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+++.+|+.-...+..+ +++=+-|..-+. --.++.|++|+..++++|..++.+|...
T Consensus 52 ~~i~~le~~~~~~l~~-ak~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQ-AKAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHccChHHHHH-HHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444433 333333443332 2467889999999999999998877543
No 103
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.70 E-value=1e+02 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 101 SSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.++|.+++.++.+|+.-|+||..+-.+.
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HFa~s 64 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHFARS 64 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777766654443
No 104
>PRK14149 heat shock protein GrpE; Provisional
Probab=27.59 E-value=1.2e+02 Score=26.52 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
..|..|+.++..++..+-.+++++.+||.+..
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~ 74 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLE 74 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999998743
No 105
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=27.23 E-value=49 Score=30.45 Aligned_cols=35 Identities=17% Similarity=0.538 Sum_probs=26.7
Q ss_pred CCCCCCCchhHHHHHHHhhchhhHHHHHhcCCCcch
Q 028221 39 SPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQR 74 (212)
Q Consensus 39 APYFPad~~q~Fa~vhKvFG~sNV~kmL~~lp~~qR 74 (212)
-||.|.. ++.-+.+-+.||.++|-.++..+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899975 7788888999999999777666664433
No 106
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.17 E-value=72 Score=30.07 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 93 VYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 93 VyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|-|-.--...|+.+|.++|+|++.++..|.+|+.-
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455789999999999999999999999984
No 107
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.17 E-value=1.1e+02 Score=23.66 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.+..|+++|+.+++++..++..+..|..-
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888777777653
No 108
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.05 E-value=1.1e+02 Score=22.94 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|..|+.++..++.+++.++.+++.
T Consensus 79 l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 79 LEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888888888888888777764
No 109
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.75 E-value=1.2e+02 Score=23.01 Aligned_cols=29 Identities=28% Similarity=0.546 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.+..|+++|+.+++++..++.++..|..-
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877777777653
No 110
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.61 E-value=1.3e+02 Score=23.19 Aligned_cols=29 Identities=41% Similarity=0.516 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.+..|+++++.+++++..++..+..|+.-
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776553
No 111
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.43 E-value=90 Score=28.60 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=28.4
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 86 NLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 86 ~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
..|.||. =-.-.+..+|+++++|++|++.+.+.+..|+
T Consensus 47 ~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 47 VRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 3455677889999999999999988888888
No 112
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=26.10 E-value=1.3e+02 Score=25.83 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=23.3
Q ss_pred hhHHHHHhcCCC--cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 60 SNVSKLLSEVPD--SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 60 sNV~kmL~~lp~--~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
..|...|++=|+ .+..+++..| ++..|. -|+|+-.++|++.+++++..++.+|......
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l------~~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAEL------RLPHPS---GGAVSLVERQLERLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHc------CCCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555553 3556666444 345553 2688888899988888888888877765543
No 113
>PRK01203 prefoldin subunit alpha; Provisional
Probab=25.87 E-value=1.1e+02 Score=25.34 Aligned_cols=28 Identities=4% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+..|++|++.+++||..++..+..|..
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~~~ 35 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEVQQ 35 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877777744
No 114
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.79 E-value=1e+02 Score=18.79 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~v 117 (212)
|..|+..|.+|+.+|+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777777653
No 115
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=25.55 E-value=57 Score=32.38 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=6.7
Q ss_pred ccCCCCCCCCccccCC
Q 028221 178 ISSSSSSSVSSLYTPP 193 (212)
Q Consensus 178 ~~~~~~~~~~~~~~~~ 193 (212)
++....+-+-+||.-.
T Consensus 44 I~tr~n~d~I~v~~l~ 59 (465)
T PF01690_consen 44 ISTRENDDSISVRSLN 59 (465)
T ss_pred eeccccccceEeeccC
Confidence 3333334444455433
No 116
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=25.46 E-value=79 Score=29.38 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHhcCCC-cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 62 VSKLLSEVPD-SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 62 V~kmL~~lp~-~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
|..-|+.|-- +.|.....-|--|+..+ -+..-+.||.+++.++.||+.+++|+.+|-
T Consensus 191 in~qlErLRL~krrlQl~g~Ld~~~q~~-------~~ae~seLq~r~~~l~~~L~~L~~e~~r~~ 248 (289)
T COG4985 191 INSQLERLRLEKRRLQLNGQLDDEFQQH-------YVAEKSELQKRLAQLQTELDALRAELERQF 248 (289)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhce
Confidence 3334444442 33444444444444444 245567899999999999999999998764
No 117
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.42 E-value=2e+02 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|-+|..+|+.|..++..+.+++...+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 118
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.38 E-value=83 Score=26.95 Aligned_cols=10 Identities=50% Similarity=1.069 Sum_probs=4.6
Q ss_pred ChhhHHhhhc
Q 028221 22 CAACKLLRRR 31 (212)
Q Consensus 22 CAACK~qRRk 31 (212)
|..|-..+++
T Consensus 2 C~iC~~~~~~ 11 (302)
T PF10186_consen 2 CPICHNSRRR 11 (302)
T ss_pred CCCCCCCCCC
Confidence 4455544444
No 119
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.35 E-value=46 Score=33.07 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-|-.|++||++||+|++.++.++.+-..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 4788999999999998888777655443
No 120
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.29 E-value=1.7e+02 Score=29.34 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 104 QQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 104 q~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
-.||+.|++||+++|.|+...+..-+|
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999988876554
No 121
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.26 E-value=1.3e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.|..|+.+++.++..+-.+++++.+||.+.
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888999999998864
No 122
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=25.01 E-value=81 Score=24.02 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=17.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 92 PVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 92 PVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
||.|.+-+.-+++.+.++---+-+.+|.+|.....
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~ 42 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQE 42 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 55554444444444443333334566777765443
No 123
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.01 E-value=1e+02 Score=28.07 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 75 ADAANSLVFEANLRLRDP-VYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 75 ~da~~SLvYEA~aR~rDP-VyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.+.++.++-+++....+= ..-.-..+..|++||..++.+|+.++.+|..|+.++
T Consensus 146 ~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 146 QKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666643333322110 000235677899999999999999999999999853
No 124
>PRK14141 heat shock protein GrpE; Provisional
Probab=24.77 E-value=1.3e+02 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.|..|+.++..++..+..+++++.+||.+.
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~ 68 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRT 68 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888899999998864
No 125
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.45 E-value=1.1e+02 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 101 SSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
..|+.++++++++++.++.++..+...-
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i 29 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALI 29 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887776643
No 126
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.24 E-value=1.5e+02 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
-+..|+++.++|++|++.++.++..+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888877777776553
No 127
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.24 E-value=1.2e+02 Score=26.26 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+..|+++++.|+.|++.+..++..|..
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888777766654
No 128
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=24.20 E-value=59 Score=28.23 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~e 120 (212)
|..|+++|+.|++||+.++.+
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~ 21 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQ 21 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999888765
No 129
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.02 E-value=1.1e+02 Score=28.15 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.--.+..|+.||..++++|+.+..+|..|+.+.
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344678899999999999999999999999874
No 130
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=23.69 E-value=35 Score=24.09 Aligned_cols=16 Identities=31% Similarity=1.014 Sum_probs=14.4
Q ss_pred cCChhhHHhhhcCCCC
Q 028221 20 TPCAACKLLRRRCAEE 35 (212)
Q Consensus 20 ~~CAACK~qRRkC~~d 35 (212)
..|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 6899999999999765
No 131
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.69 E-value=1.4e+02 Score=25.35 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
-|-.|+.++..++..+-.+++++.+||.+..
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIA 56 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888887643
No 132
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=23.59 E-value=1.6e+02 Score=22.89 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+-+|+.||+.|+.+...+.+++..-+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a 52 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555555554443
No 133
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.57 E-value=1.6e+02 Score=21.85 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+..+++++++++.|-..++-|+..+...
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 7778888888888888777777777664
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.54 E-value=1.3e+02 Score=24.77 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
-|..|+..+..++.+|..+..+|...+..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888777766553
No 135
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.53 E-value=2.1e+02 Score=24.18 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=5.7
Q ss_pred hhHHHHHhcCC
Q 028221 60 SNVSKLLSEVP 70 (212)
Q Consensus 60 sNV~kmL~~lp 70 (212)
+||..+|..+.
T Consensus 12 a~~~~~ld~~E 22 (221)
T PF04012_consen 12 ANINELLDKAE 22 (221)
T ss_pred HHHHHHHHhhc
Confidence 45555555543
No 136
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.47 E-value=1.6e+02 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|..|+.+++.++.++...++++.+|+.+
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~~r 47 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYRKR 47 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666554
No 137
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.30 E-value=3.7e+02 Score=21.05 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr 118 (212)
.-+...|+++++.++.+++.++
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~ 99 (126)
T cd04785 78 AEADAIARAHLADVRARIADLR 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555543
No 138
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.27 E-value=3.4e+02 Score=24.80 Aligned_cols=30 Identities=27% Similarity=0.205 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 101 SSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
.-|-|.+--+++.|+.+..||+..+.+-+.
T Consensus 44 Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~ 73 (233)
T COG3416 44 YYLAQRVLIQEQALKKASTQIKELEKRIAI 73 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555656666777777777776665543
No 139
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.05 E-value=2.6e+02 Score=20.38 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 028221 77 AANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 77 a~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr 118 (212)
++.+-+-||+.| ...|+.+|+.|+.+++.+|
T Consensus 29 ~~e~kLqeaE~r-----------n~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKR-----------NRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhh
Confidence 555666666666 3456666666666665554
No 140
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=23.04 E-value=49 Score=21.27 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=10.3
Q ss_pred cCChhhHHhhhcCCC
Q 028221 20 TPCAACKLLRRRCAE 34 (212)
Q Consensus 20 ~~CAACK~qRRkC~~ 34 (212)
.+|..|+..+.||..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 378999999999975
No 141
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=23.00 E-value=2.6e+02 Score=23.16 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-|-.+..+|...+.+....|..++.+....
T Consensus 84 Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 84 EIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888999999999999998876643
No 142
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.73 E-value=1.1e+02 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
--.+..|++|+..++.+|+.+.++|..||.+.
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44678899999999999999999999999864
No 143
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.70 E-value=1.4e+02 Score=22.74 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
-..+..|+.+++.++.+++.+++.+..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (113)
T cd01109 78 PERLELLEEHREELEEQIAELQETLAY 104 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555443
No 144
>PRK14164 heat shock protein GrpE; Provisional
Probab=22.64 E-value=1.9e+02 Score=25.85 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 90 RDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 90 rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.||-----+-|..|+.++..++..+-.++++..+||.+.
T Consensus 69 ~~~~~~~~~~~~~le~el~el~d~llR~~AE~eN~RkR~ 107 (218)
T PRK14164 69 VDPELADDGEASTVEAQLAERTEDLQRVTAEYANYRRRT 107 (218)
T ss_pred cCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333448899999999999999999999999999874
No 145
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.55 E-value=1.8e+02 Score=28.75 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH
Q 028221 108 QSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 108 ~~lqaEL~~vr~eL~~yr~q~a 129 (212)
+.|..||+.-+.|++..+.+-+
T Consensus 359 d~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 359 DSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555544
No 146
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.45 E-value=2.8e+02 Score=28.46 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=5.4
Q ss_pred chhHHHHHHHHHH
Q 028221 95 GCLGAISSLQQQV 107 (212)
Q Consensus 95 GC~GiI~~Lq~QI 107 (212)
|-+-++..|+.-|
T Consensus 218 gLhHv~tElKeii 230 (574)
T PF07462_consen 218 GLHHVFTELKEII 230 (574)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444443
No 147
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.27 E-value=1.3e+02 Score=28.96 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.|..|+.||++++.+|+.++.++.....
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666776666666666655554444
No 148
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.22 E-value=2.3e+02 Score=20.31 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+.|..|...|...+.+|..++.++...+.
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777766666665554
No 149
>PRK14127 cell division protein GpsB; Provisional
Probab=22.16 E-value=1.2e+02 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
...|..|+.++..++.+|+..+.++..+...
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3467889999999999999999999987654
No 150
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=22.15 E-value=1.5e+02 Score=24.11 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|.+..|+.++..++.+|..++++|+..++
T Consensus 76 ~~~~~l~~~~~~~~~~l~~l~a~Le~l~~ 104 (109)
T PF03955_consen 76 GSYSELKANLTALEDKLTALLAQLEALKQ 104 (109)
T ss_dssp ---SSTTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 151
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.06 E-value=1.6e+02 Score=26.06 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
..|..|+.++..++..+-.+++++.+||.+.
T Consensus 20 ~~l~~le~e~~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 20 QEIEALKAEVAALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888763
No 152
>PRK14156 heat shock protein GrpE; Provisional
Probab=22.02 E-value=1.6e+02 Score=25.39 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 74 RADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 74 R~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-++++.-++-|-... .-|-.|+.+++.++..+..+++++.+||.+.
T Consensus 19 ~~~~~~~~~~~~~~~---------~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~ 64 (177)
T PRK14156 19 TEETVEEVVEETPEK---------SELELANERADEFENKYLRAHAEMQNIQRRA 64 (177)
T ss_pred HHHHHHHHHhhcccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566555444 3477899999999999999999999998864
No 153
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.98 E-value=1.7e+02 Score=23.55 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028221 101 SSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr 118 (212)
..|+++|..+-+|-+.++
T Consensus 25 ~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 25 GALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444433333333
No 154
>PRK11519 tyrosine kinase; Provisional
Probab=21.84 E-value=1.2e+02 Score=30.59 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
..+..|++|+..++.+|+.+..+|..|+.+.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999864
No 155
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.68 E-value=1.6e+02 Score=26.13 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-|..|+.++..++..+-.+++++.+||.+.
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888888888763
No 156
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.66 E-value=1.7e+02 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 028221 95 GCLGAISSLQQQVQSLQAE 113 (212)
Q Consensus 95 GC~GiI~~Lq~QI~~lqaE 113 (212)
..+-.|..||.+|+.|+.+
T Consensus 15 ~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776
No 157
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.63 E-value=1.6e+02 Score=30.24 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=47.7
Q ss_pred hchhhHHHHHhcC-------------CCc--chHHHHHHHHHHHhhhc------CCCCCchhHHHHHHHHHHHHHHHHHH
Q 028221 57 FGASNVSKLLSEV-------------PDS--QRADAANSLVFEANLRL------RDPVYGCLGAISSLQQQVQSLQAELN 115 (212)
Q Consensus 57 FG~sNV~kmL~~l-------------p~~--qR~da~~SLvYEA~aR~------rDPVyGC~GiI~~Lq~QI~~lqaEL~ 115 (212)
|--|++++||+.- .+. +.++..++|.|++.++- ++.+-.-.-++..+|+++..+++||.
T Consensus 283 YRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 283 YRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELE 362 (675)
T ss_pred ccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHH
Confidence 4457777777732 222 56899999999998763 67888888888888899999999998
Q ss_pred HHH
Q 028221 116 AMR 118 (212)
Q Consensus 116 ~vr 118 (212)
.++
T Consensus 363 ~~~ 365 (675)
T KOG0242|consen 363 RLK 365 (675)
T ss_pred hhc
Confidence 744
No 158
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.58 E-value=1.6e+02 Score=25.69 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
-.-|-.|+.++..++..+-.+++++.+||.+..
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888888999999988643
No 159
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.37 E-value=2.2e+02 Score=20.37 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
+..++.+++.++.+++.++++....+....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666665555433
No 160
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.23 E-value=1.8e+02 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.-|..|+.+|..+-+|-+.++-|....|.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444443333
No 161
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.07 E-value=1.7e+02 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-|-.|+.++..++..+..+++++.+||-+.
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~ 70 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRT 70 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888764
No 162
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=21.05 E-value=1.3e+02 Score=25.33 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
.|..||.||+.+++.|+.|-+.|.+.-.+.-
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKltGRDp 34 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLTGRDP 34 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCc
Confidence 5788999999999999999999999888764
No 163
>PRK14157 heat shock protein GrpE; Provisional
Probab=20.98 E-value=1.7e+02 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
-..-|-.|+.++..++..|-.++++..+||.+.
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~ 114 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRT 114 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999999999764
No 164
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.95 E-value=1.7e+02 Score=22.43 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=35.1
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 63 SKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 63 ~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-++|++-. ..|..|++-.--|...+.. .-.-|..|+.+|..++.++..+..+|..|+.
T Consensus 52 ~~flken~-~k~~rA~k~a~~e~k~~~~-----k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 52 DKFLKENE-AKRERAEKRAEEEKKKKEE-----KEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444332 2455566666666555422 2456777777777777777777777776654
No 165
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.90 E-value=3.9e+02 Score=23.94 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 78 ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 78 ~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
++.-+..|.-+ -|=+-| |..|-.|+.+|..++.+|+.++.++...+.....
T Consensus 14 lq~~i~~as~~-lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ 64 (207)
T PF05546_consen 14 LQETIFTASQA-LNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDD 64 (207)
T ss_pred HHHHHHHHHHH-HHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544 455777 9999999999999999999999998877765443
No 166
>PRK14626 hypothetical protein; Provisional
Probab=20.87 E-value=1.6e+02 Score=23.41 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|-+..+..|.+++|++++.++++|+.-..
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~v 33 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEEI 33 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 44677888888899999999999886543
No 167
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.87 E-value=1.8e+02 Score=24.95 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
..|..|+.++..++..+-.+++++.+||.+.
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~ 57 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRA 57 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888889999998864
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.86 E-value=1.6e+02 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|..|+++.++|++||..+++++...+.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777777777777777776655433
No 169
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=1.9e+02 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
..|..|+.|+..++..+-.+++++.+||.+.
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~ 73 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRT 73 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888763
No 170
>PRK03100 sec-independent translocase; Provisional
Probab=20.69 E-value=5.1e+02 Score=21.67 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=12.8
Q ss_pred HHhhchhhHHHHHhcCCC
Q 028221 54 HKVFGASNVSKLLSEVPD 71 (212)
Q Consensus 54 hKvFG~sNV~kmL~~lp~ 71 (212)
--|||-.++=++++.+-.
T Consensus 18 Lvv~GPkrLP~~~r~lG~ 35 (136)
T PRK03100 18 LVILGPERLPGAIRWTAR 35 (136)
T ss_pred HhhcCchHHHHHHHHHHH
Confidence 468888887777776544
No 171
>PRK06798 fliD flagellar capping protein; Validated
Probab=20.63 E-value=1.8e+02 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
..+..|+.||.+++.+++.+..+++.+.
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~~e 406 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQKQ 406 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888887777776664443
No 172
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.62 E-value=2.1e+02 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
+++|..||+.||++|..+..+.+.-..
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERig 30 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIG 30 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888887655444333
No 173
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=20.62 E-value=3.2e+02 Score=19.40 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 028221 76 DAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 76 da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr 118 (212)
+..+-|.-|=..|..|+ .|+---|..|..+...|+++|+..|
T Consensus 8 ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 8 ELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666777888887 4556667777777777777776654
No 174
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.61 E-value=1.7e+02 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+..|+++++.+++.++.+...+..|
T Consensus 89 ~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 89 RAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 175
>PF15357 SEEK1: Psoriasis susceptibility 1 candidate 1
Probab=20.55 E-value=77 Score=26.53 Aligned_cols=70 Identities=30% Similarity=0.523 Sum_probs=37.6
Q ss_pred HHHHHhhhhHHHHhhcccCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCCC
Q 028221 118 RTEIMKYKYREAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISSSSSSSVSSLYTPPMRTT 197 (212)
Q Consensus 118 r~eL~~yr~q~aA~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (212)
+..-.+-|.|+. -+.|++|.-+++++..++..-+ +.+.-|. |.||| --+.++.+-++..+-+|.++.+-.
T Consensus 72 ~ddcrk~rtqed----ilvpsshpelfas~~p~apeea----a~lq~~q-p~ppp-sgi~ls~srt~~ptll~~~ppsh~ 141 (149)
T PF15357_consen 72 QDDCRKGRTQED----ILVPSSHPELFASVLPMAPEEA----ARLQQPQ-PLPPP-SGIHLSASRTSAPTLLYSPPPSHS 141 (149)
T ss_pred hhhhhccccccc----eeccCCcHHHHhccCCCChHHH----hcccCCC-CCCCC-CceecccccCCCceeeecCCCCCC
Confidence 333444444554 6788889999766655544332 2332221 11122 225666555566666798876643
No 176
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=20.33 E-value=2.2e+02 Score=20.02 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 95 GCLGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 95 GC~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|+-+.+-.+.++++.++++|+....++..
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~ 29 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRK 29 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777777666654
No 177
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=20.29 E-value=1.3e+02 Score=20.14 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=21.7
Q ss_pred CCCCchhHHHHHHHhhchhhHHHHHhcCCCcc
Q 028221 42 FSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQ 73 (212)
Q Consensus 42 FPad~~q~Fa~vhKvFG~sNV~kmL~~lp~~q 73 (212)
||+++.+--..+.+-=--..|+..|+.||+.+
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~~ 37 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDRE 37 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCccC
Confidence 78776655555554444567899999999543
No 178
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=1.5e+02 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 107 VQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 107 I~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
++++.++|..++.||..++.|.|+
T Consensus 13 ~eeL~~~l~eLK~ELf~LR~q~a~ 36 (69)
T COG0255 13 VEELEEELRELKKELFNLRFQLAT 36 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777888888888888887774
Done!