Query 028221
Match_columns 212
No_of_seqs 125 out of 309
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 90.6 0.36 1.2E-05 30.3 4.0 29 98-126 2-30 (33)
2 2er8_A Regulatory protein Leu3 79.2 3.6 0.00012 27.8 5.0 21 98-118 49-69 (72)
3 2xdj_A Uncharacterized protein 71.3 5.4 0.00019 29.4 4.5 28 99-126 21-48 (83)
4 3nmd_A CGMP dependent protein 69.2 7 0.00024 28.5 4.5 29 98-126 40-68 (72)
5 1nkp_B MAX protein, MYC proto- 68.9 8.5 0.00029 27.3 5.0 33 97-129 46-78 (83)
6 1zme_C Proline utilization tra 67.5 5.3 0.00018 26.7 3.4 25 98-122 44-68 (70)
7 1am9_A Srebp-1A, protein (ster 67.4 8 0.00027 27.8 4.6 28 97-124 49-76 (82)
8 1zxa_A CGMP-dependent protein 62.1 10 0.00036 27.2 4.3 28 99-126 26-53 (67)
9 3r4h_A Coiled coil helix CC-TE 61.8 12 0.0004 23.5 3.9 29 98-126 2-30 (34)
10 1hlo_A Protein (transcription 58.2 9.8 0.00033 27.0 3.6 24 97-120 56-79 (80)
11 2yy0_A C-MYC-binding protein; 58.0 11 0.00039 25.5 3.7 24 101-124 22-45 (53)
12 3ra3_B P2F; coiled coil domain 57.1 11 0.00039 22.7 3.1 24 100-123 2-25 (28)
13 4dzn_A Coiled-coil peptide CC- 56.8 15 0.0005 23.0 3.7 25 106-130 3-27 (33)
14 3kin_B Kinesin heavy chain; mo 56.4 50 0.0017 25.1 7.6 70 56-125 36-116 (117)
15 2zvf_A Alanyl-tRNA synthetase; 55.8 41 0.0014 26.0 7.1 49 80-128 14-62 (171)
16 4e61_A Protein BIM1; EB1-like 55.4 18 0.00061 28.1 4.8 33 95-127 1-33 (106)
17 3myf_A Sensor protein; HPT, hi 54.7 44 0.0015 25.0 7.0 61 49-117 52-112 (119)
18 2l5g_B Putative uncharacterize 49.5 23 0.00078 23.5 3.9 26 102-127 6-31 (42)
19 2dgc_A Protein (GCN4); basic d 48.1 25 0.00084 24.3 4.2 30 98-127 30-59 (63)
20 2wt7_B Transcription factor MA 47.1 23 0.00077 26.7 4.1 55 73-127 28-84 (90)
21 1rtm_1 Mannose-binding protein 46.2 19 0.00064 26.8 3.6 21 100-120 6-26 (149)
22 3r4h_A Coiled coil helix CC-TE 45.0 29 0.00098 21.7 3.7 25 106-130 3-27 (34)
23 2yy0_A C-MYC-binding protein; 44.9 32 0.0011 23.2 4.3 26 99-124 27-52 (53)
24 1nlw_A MAD protein, MAX dimeri 44.5 36 0.0012 24.4 4.8 31 97-127 46-76 (80)
25 1dh3_A Transcription factor CR 44.3 34 0.0012 23.0 4.4 29 98-126 22-50 (55)
26 3q0x_A Centriole protein; cent 43.9 26 0.00089 30.2 4.6 32 99-130 179-210 (228)
27 3pbf_A Pulmonary surfactant-as 41.6 19 0.00065 26.4 3.0 25 99-123 3-27 (148)
28 2y9y_A Imitation switch protei 40.2 1.6E+02 0.0056 27.0 9.5 78 48-129 132-215 (374)
29 1urf_A Protein kinase C-like 1 39.0 69 0.0023 23.8 5.6 45 56-123 24-68 (81)
30 3ra3_A P1C; coiled coil domain 38.4 25 0.00086 21.2 2.6 24 102-125 4-27 (28)
31 3trt_A Vimentin; cytoskeleton, 38.3 28 0.00095 24.1 3.3 20 99-118 57-76 (77)
32 3twe_A Alpha4H; unknown functi 38.2 44 0.0015 20.0 3.6 22 101-122 4-25 (27)
33 3kqg_A Langerin, C-type lectin 36.6 46 0.0016 25.3 4.6 25 98-122 16-40 (182)
34 2wg5_A General control protein 36.2 35 0.0012 25.6 3.8 28 100-127 9-36 (109)
35 1r8e_A Multidrug-efflux transp 35.2 84 0.0029 25.5 6.2 26 100-125 88-113 (278)
36 1jcd_A Major outer membrane li 34.8 66 0.0023 21.8 4.6 23 100-122 13-35 (52)
37 2wt7_A Proto-oncogene protein 34.6 56 0.0019 22.2 4.3 26 100-125 25-50 (63)
38 3mq7_A Bone marrow stromal ant 34.2 54 0.0018 26.0 4.6 28 97-124 77-104 (121)
39 3efg_A Protein SLYX homolog; x 34.0 27 0.00092 25.2 2.7 29 99-127 29-57 (78)
40 3w03_C DNA repair protein XRCC 33.8 52 0.0018 27.5 4.8 31 95-125 149-179 (184)
41 1uuj_A Platelet-activating fac 33.7 17 0.00059 27.2 1.6 25 99-123 59-83 (88)
42 1buu_A Protein (mannose-bindin 33.6 29 0.001 26.5 3.0 23 97-119 22-44 (168)
43 3iqt_A Signal transduction his 33.5 69 0.0024 24.2 5.1 59 51-124 63-121 (123)
44 2p9x_A Hypothetical protein PH 33.3 20 0.00069 27.6 2.0 14 45-58 44-58 (99)
45 3v86_A De novo design helix; c 32.8 79 0.0027 18.9 4.1 24 100-123 2-25 (27)
46 1a93_B MAX protein, coiled coi 32.2 63 0.0021 20.5 3.8 24 99-122 8-31 (34)
47 2pbi_A Regulator of G-protein 31.5 50 0.0017 30.4 4.7 84 46-129 142-257 (424)
48 1jnm_A Proto-oncogene C-JUN; B 30.5 73 0.0025 21.4 4.3 27 99-125 23-49 (62)
49 3gpv_A Transcriptional regulat 30.3 51 0.0018 25.5 3.9 32 99-130 103-134 (148)
50 1r8d_A Transcription activator 29.9 1.1E+02 0.0037 22.1 5.5 25 99-123 76-100 (109)
51 1t2k_D Cyclic-AMP-dependent tr 29.7 89 0.003 20.9 4.6 21 103-123 34-54 (61)
52 1ci6_A Transcription factor AT 29.6 71 0.0024 21.8 4.1 26 100-125 32-57 (63)
53 1t2k_D Cyclic-AMP-dependent tr 29.3 80 0.0027 21.1 4.3 28 99-126 23-50 (61)
54 3i00_A HIP-I, huntingtin-inter 29.2 53 0.0018 25.6 3.8 31 78-119 31-61 (120)
55 1gk6_A Vimentin; intermediate 29.0 63 0.0022 21.9 3.8 22 102-123 4-25 (59)
56 1jnm_A Proto-oncogene C-JUN; B 28.5 95 0.0032 20.9 4.6 31 97-127 28-58 (62)
57 1x8y_A Lamin A/C; structural p 28.4 69 0.0024 23.1 4.1 26 99-124 29-54 (86)
58 1slq_A VP4; beta sandwich, gre 28.3 27 0.00093 30.9 2.2 36 90-125 234-269 (278)
59 1ic2_A Tropomyosin alpha chain 27.8 69 0.0023 22.7 4.0 48 73-124 20-67 (81)
60 2kxc_B ESPF-like protein; IRTK 27.8 55 0.0019 22.2 3.2 23 116-138 8-30 (48)
61 1hjb_A Ccaat/enhancer binding 27.8 72 0.0025 23.6 4.1 28 99-126 44-71 (87)
62 1rtm_1 Mannose-binding protein 27.5 61 0.0021 23.9 3.8 25 103-127 2-26 (149)
63 1gu4_A CAAT/enhancer binding p 27.5 77 0.0026 22.9 4.2 28 99-126 44-71 (78)
64 2lf0_A Uncharacterized protein 27.1 1.5E+02 0.0052 23.5 6.1 54 73-132 17-70 (123)
65 3i00_A HIP-I, huntingtin-inter 26.9 80 0.0027 24.5 4.5 22 104-125 39-60 (120)
66 1buu_A Protein (mannose-bindin 26.8 64 0.0022 24.5 3.9 30 97-126 15-44 (168)
67 3u1c_A Tropomyosin alpha-1 cha 26.8 74 0.0025 23.5 4.1 29 97-125 43-71 (101)
68 3bbp_D GRIP and coiled-coil do 26.6 77 0.0026 23.1 4.0 55 52-117 7-62 (71)
69 3azd_A Short alpha-tropomyosin 26.6 15 0.00051 23.2 0.2 24 100-123 6-29 (37)
70 3sjb_C Golgi to ER traffic pro 26.0 73 0.0025 24.1 3.9 31 97-127 48-78 (93)
71 3qh9_A Liprin-beta-2; coiled-c 25.9 63 0.0022 24.0 3.5 26 98-123 54-79 (81)
72 1gk4_A Vimentin; intermediate 25.7 83 0.0028 22.5 4.1 40 78-124 13-52 (84)
73 2wt7_A Proto-oncogene protein 25.5 93 0.0032 21.1 4.1 28 99-126 31-58 (63)
74 2k48_A Nucleoprotein; viral pr 25.3 90 0.0031 24.3 4.4 27 97-123 34-60 (107)
75 2z5i_A TM, general control pro 24.7 1E+02 0.0035 20.6 4.1 27 99-125 13-39 (52)
76 2xv5_A Lamin-A/C; structural p 24.7 91 0.0031 22.3 4.1 20 102-121 9-28 (74)
77 1ofc_X ISWI protein; nuclear p 24.3 3.5E+02 0.012 24.0 8.7 79 47-129 118-201 (304)
78 1gd2_E Transcription factor PA 23.9 1.3E+02 0.0043 21.4 4.7 22 103-124 48-69 (70)
79 3viq_B Mating-type switching p 23.7 48 0.0016 24.7 2.5 22 100-121 10-31 (85)
80 3htk_A Structural maintenance 23.6 1.4E+02 0.0047 19.5 4.6 27 100-126 28-54 (60)
81 1ef1_C Moesin; membrane, FERM 23.6 26 0.0009 26.3 1.1 17 101-117 29-45 (90)
82 3mud_A DNA repair protein XRCC 23.4 98 0.0033 25.8 4.6 43 71-124 119-161 (175)
83 1nkp_A C-MYC, MYC proto-oncoge 23.4 1.3E+02 0.0044 21.7 4.8 30 97-126 51-80 (88)
84 3q4f_C DNA repair protein XRCC 23.1 82 0.0028 26.6 4.1 25 96-120 159-183 (186)
85 1kd8_B GABH BLL, GCN4 acid bas 22.9 1.3E+02 0.0046 19.2 4.1 27 100-126 3-29 (36)
86 4ani_A Protein GRPE; chaperone 22.7 98 0.0033 26.2 4.6 31 98-128 66-96 (213)
87 4emc_A Monopolin complex subun 22.5 98 0.0033 26.2 4.5 9 76-84 20-28 (190)
88 1deb_A APC protein, adenomatou 22.4 95 0.0033 21.4 3.6 24 101-124 6-29 (54)
89 3sja_C Golgi to ER traffic pro 22.3 90 0.0031 22.2 3.6 27 97-123 31-57 (65)
90 1hjb_A Ccaat/enhancer binding 22.3 79 0.0027 23.3 3.5 23 102-124 54-76 (87)
91 1pwb_A SP-D, PSP-D, pulmonary 22.2 84 0.0029 24.0 3.8 20 100-119 33-52 (177)
92 2yny_A General control protein 22.2 1.1E+02 0.0039 23.6 4.5 29 97-125 75-103 (106)
93 3e98_A GAF domain of unknown f 22.0 84 0.0029 26.6 4.1 56 60-124 34-91 (252)
94 2wt7_B Transcription factor MA 22.0 1.9E+02 0.0065 21.5 5.5 25 100-124 50-74 (90)
95 1htn_A Tetranectin; plasminoge 21.8 45 0.0016 25.6 2.2 24 97-120 21-44 (182)
96 2ic6_A Nucleocapsid protein; h 21.7 96 0.0033 22.8 3.8 27 97-123 4-30 (78)
97 1fxk_C Protein (prefoldin); ar 21.7 1.1E+02 0.0038 22.8 4.3 28 99-126 9-36 (133)
98 3pjs_K KCSA, voltage-gated pot 21.6 90 0.0031 24.3 3.9 27 99-125 139-165 (166)
99 2gr7_A Adhesin; trimeric autot 21.5 1.7E+02 0.0059 22.8 5.5 25 98-122 32-56 (129)
100 1uii_A Geminin; human, DNA rep 21.0 1E+02 0.0034 23.0 3.8 26 100-125 48-73 (83)
101 1yhn_B RILP, RAB interacting l 21.0 1.3E+02 0.0043 21.5 4.1 24 105-128 10-33 (65)
102 3m48_A General control protein 20.9 1E+02 0.0034 19.5 3.2 26 100-125 2-27 (33)
103 1bb1_B Designed, thermostable 20.8 1.7E+02 0.0057 18.4 4.6 30 100-129 4-33 (36)
104 1gd2_E Transcription factor PA 20.7 80 0.0027 22.4 3.1 29 98-126 29-57 (70)
105 1nkp_B MAX protein, MYC proto- 20.5 1.1E+02 0.0039 21.3 3.9 27 98-124 54-80 (83)
106 2zxx_A Geminin; coiled-coil, c 20.5 1E+02 0.0035 22.7 3.7 26 100-125 36-61 (79)
107 3c3f_A Alpha/beta peptide with 20.4 1.7E+02 0.0057 18.6 4.1 26 100-125 3-28 (34)
108 3tnu_B Keratin, type II cytosk 20.1 1.2E+02 0.0042 22.9 4.3 26 97-122 35-60 (129)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=90.55 E-value=0.36 Score=30.31 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|.|..|+|+|..++.|+++++-||+..++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77899999999999999999988887664
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=79.21 E-value=3.6 Score=27.80 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028221 98 GAISSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr 118 (212)
+.|..|+++|+.|+..|+.++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777766543
No 3
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.31 E-value=5.4 Score=29.40 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
..+.|++||+.++.|+..+|.+++...+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5678899999999999888887776554
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.16 E-value=7 Score=28.54 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
..|..|+.+|+...+++..+|.+|-+|+.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999998864
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.87 E-value=8.5 Score=27.34 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
+-.|..|+++++.++.|++.++.+....+.+-.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999999999888887766543
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.55 E-value=5.3 Score=26.65 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
+.|..|+++|+.|+.+|..++..|.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588899999999999999887664
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=67.41 E-value=8 Score=27.78 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+-.|..||++++.|++|+..++.++...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999888754
No 8
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=62.10 E-value=10 Score=27.18 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.|..|+..++.-++|+..+|.+|.+|+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999876
No 9
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=61.76 E-value=12 Score=23.52 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
|.+..++|++...+.||++++-||+..++
T Consensus 2 gelaaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556677777777777777777776554
No 10
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.17 E-value=9.8 Score=26.96 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~e 120 (212)
+-.|..|+++++.++.+++.++.|
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566899999999999998887754
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.01 E-value=11 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 101 SSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
-.|++++..|+++++.++.++...
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444433
No 12
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.07 E-value=11 Score=22.70 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|..|+|+...+++|++++.-||+.
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 567888888888888888777654
No 13
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.78 E-value=15 Score=22.96 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 106 QVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 106 QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
+|..+++|+++++.||+..+..-||
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877775443
No 14
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=56.41 E-value=50 Score=25.13 Aligned_cols=70 Identities=10% Similarity=0.222 Sum_probs=37.5
Q ss_pred hhchhhHHHHHhcCCCc--chHHHHHHHHHHHhhhcC------CCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 56 VFGASNVSKLLSEVPDS--QRADAANSLVFEANLRLR------DPVYGCL---GAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 56 vFG~sNV~kmL~~lp~~--qR~da~~SLvYEA~aR~r------DPVyGC~---GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
.||...-+-|+-.+.|. .-++.+++|-|-+.++.. +=...-. ..+.+...+++.|++++..++.||..+
T Consensus 36 sLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 36 SLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34443333444455544 568999999999877632 1111111 222333444555556666666666666
Q ss_pred h
Q 028221 125 K 125 (212)
Q Consensus 125 r 125 (212)
|
T Consensus 116 R 116 (117)
T 3kin_B 116 R 116 (117)
T ss_dssp T
T ss_pred h
Confidence 5
No 15
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=55.76 E-value=41 Score=25.97 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.3
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 80 SLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 80 SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.++.+....+.-+..--...|..|+.++..++.||+.++.+++.+....
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~ 62 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADI 62 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444456677888999999999999999999998875433
No 16
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=55.36 E-value=18 Score=28.09 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 95 GCLGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 95 GC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|..|.+..||.++...+.++..++.++..++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888887777777666553
No 17
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=54.69 E-value=44 Score=24.96 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=31.9
Q ss_pred HHHHHHHhhchhhHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 028221 49 KFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 49 ~Fa~vhKvFG~sNV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~v 117 (212)
-+..+||+-|.+..+..-+ . ..-+...|..+|..+++-..-..+..|..+|..+..+++..
T Consensus 52 l~~~aHkLkGaa~~~Ga~~-----L---~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~ 112 (119)
T 3myf_A 52 MLSTIHKLHGASCYCGVPT-----T---QRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQV 112 (119)
T ss_dssp HHHHHHHHHHHHTTTTCHH-----H---HHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHH-----H---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788887765443211 1 12233456667777776554455555555554444444443
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.53 E-value=23 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 102 SLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.|-|+|+.+-.|++.++++|..++..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888887764
No 19
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.05 E-value=25 Score=24.35 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
..|..|+.++..|+.+...++.++...+.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888988888888888888876653
No 20
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=47.10 E-value=23 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhhhcC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 73 QRADAANSLVFEANLRLR--DPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~r--DPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+|....+-=.|.+++|.+ +=+..--.-+..|+.|++.++.|+..++.++..|+..
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888888854 2223333445556666666666666666666666553
No 21
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=46.18 E-value=19 Score=26.79 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~e 120 (212)
|..|+++++.||.+|..++..
T Consensus 6 l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455666666666666655543
No 22
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=45.05 E-value=29 Score=21.75 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 106 QVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 106 QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
++...++||++++.||+..+..-||
T Consensus 3 elaaikqelaaikkelaaikfelaa 27 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAA 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999988886554
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.93 E-value=32 Score=23.20 Aligned_cols=26 Identities=8% Similarity=0.441 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
-+..|+.+++.|+++++.++.+|..|
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678889999999999998888765
No 24
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.50 E-value=36 Score=24.44 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+-.|..|+++...++.|++.++.+....+.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999998888777665543
No 25
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=44.28 E-value=34 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-.|..|+.++..|+.|...++.++.....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888876543
No 26
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=43.87 E-value=26 Score=30.19 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
-...|++.|++.++|.+..+.+|+.+|.+.|.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999987664
No 27
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=41.63 E-value=19 Score=26.45 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
++-.|+++|+.|+.+|..++..|..
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~~ 27 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLSL 27 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888999999999988888744
No 28
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=40.22 E-value=1.6e+02 Score=27.03 Aligned_cols=78 Identities=14% Similarity=0.325 Sum_probs=56.8
Q ss_pred hHHHHHHHhhchhhHHHHHhcCC-CcchHHHH--HHHHHHHhhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 48 QKFAAVHKVFGASNVSKLLSEVP-DSQRADAA--NSLVFEANLRLRDPVYG---CLGAISSLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 48 q~Fa~vhKvFG~sNV~kmL~~lp-~~qR~da~--~SLvYEA~aR~rDPVyG---C~GiI~~Lq~QI~~lqaEL~~vr~eL 121 (212)
+.|-.+...||+.++-+|-.++. ...-+++- ....|+ |- +=|.| .++.|-..+.+|+.++.+..+++..|
T Consensus 132 ~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~---Ry-~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~~Ki 207 (374)
T 2y9y_A 132 RKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS---NI-ERIEDYEKYLKIIENEEEKIKRVKMQQEALRRKL 207 (374)
T ss_dssp HHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH---TC-SSCSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH---hh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999996 33333322 222222 21 22333 68899999999999999999999999
Q ss_pred HhhhhHHH
Q 028221 122 MKYKYREA 129 (212)
Q Consensus 122 ~~yr~q~a 129 (212)
..|+..-.
T Consensus 208 ~~y~~P~~ 215 (374)
T 2y9y_A 208 SEYKNPFF 215 (374)
T ss_dssp TTCSSHHH
T ss_pred HHccCCHH
Confidence 99998643
No 29
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=38.99 E-value=69 Score=23.80 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=30.3
Q ss_pred hhchhhHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 56 VFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 56 vFG~sNV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
--|+.|+++++.+-...+|.-.. || |+.+++-+..++.+|.+|.+
T Consensus 24 K~GAENmi~~y~~g~~~drKlLa-----eA------------------QqmL~DSk~KIe~lRmqI~k 68 (81)
T 1urf_A 24 KQGAENMIQTYSNGSTKDRKLLL-----TA------------------QQMLQDSKTKIDIIRMQLRR 68 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHH-----HH------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhHHHHH-----HH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999998877775433 22 44555566666666666654
No 30
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.40 E-value=25 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 102 SLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.|+-+...+++.+++++++|+..+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 455556667777777777766544
No 31
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.34 E-value=28 Score=24.13 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMR 118 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr 118 (212)
.|..|.++|+.|+.||..+|
T Consensus 57 Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35666666666666666544
No 32
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=38.18 E-value=44 Score=19.96 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028221 101 SSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
-.|..+++.+|+.|..+|.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888877663
No 33
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=36.61 E-value=46 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
..+..|+.+|+.|+.+|+.+++.|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677776666665554
No 34
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=36.19 E-value=35 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+.+|+.+++.++.|+..++.||...+..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999988774
No 35
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.24 E-value=84 Score=25.51 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+..|++||+.++..++.++..+..++
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 88 ERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555444443
No 36
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.80 E-value=66 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
|..|..||.+|+.++..++.++.
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.57 E-value=56 Score=22.21 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
|..|+.++..|+.+-..++.+|..++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666655555555555554443
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.19 E-value=54 Score=26.04 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
-|-|-.|.++|++..+|++.+|.+....
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 3566666666666666666666655543
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.96 E-value=27 Score=25.21 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
.|-.|...|..-+.+|..++.+|.....+
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666555544
No 40
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.77 E-value=52 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 95 GCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 95 GC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.|++.|..|+.++.+++.|.+.++.|.....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888877776665443
No 41
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=33.73 E-value=17 Score=27.22 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
-|-.||.+|.+|++++..++++|..
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667999999999999999888863
No 42
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=33.63 E-value=29 Score=26.53 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~ 119 (212)
-..|..|+.||+.|+.+|..+++
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666777777777766655
No 43
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=33.55 E-value=69 Score=24.19 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHhhchhhHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 51 AAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 51 a~vhKvFG~sNV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
..+||+-|.+..+..- .-..-+...|..+|..+++. .++..+..|+.|+..+..+...|
T Consensus 63 ~~aHkLkGaa~~~Ga~--------~L~~~c~~LE~~~r~g~~~~-------~l~~~l~~L~del~~v~~~~~~~ 121 (123)
T 3iqt_A 63 DLIHKLHGSCGYSGVP--------RMKNLCQLIEQQLRSGTKEE-------DLEPELLELLDEMDNVAREASKI 121 (123)
T ss_dssp HHHHHHHHHHTTSCCH--------HHHHHHHHHHHHHHTTCCGG-------GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467766665433220 11223345677778777754 45556666666777776666654
No 44
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=33.33 E-value=20 Score=27.56 Aligned_cols=14 Identities=64% Similarity=1.127 Sum_probs=12.2
Q ss_pred CchhHHH-HHHHhhc
Q 028221 45 HEPQKFA-AVHKVFG 58 (212)
Q Consensus 45 d~~q~Fa-~vhKvFG 58 (212)
++|++|. .|.|+||
T Consensus 44 eDP~kFkeaV~~LFG 58 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFG 58 (99)
T ss_dssp HCHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHH
Confidence 6899998 5799999
No 45
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.76 E-value=79 Score=18.87 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+.+|+.++-.++-|+.+++.|...
T Consensus 2 vyqlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhc
Confidence 457778888888888888777654
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.17 E-value=63 Score=20.48 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
-+...|+.|++++.+-+.+..|+-
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 356677778888877777777663
No 47
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=31.48 E-value=50 Score=30.44 Aligned_cols=84 Identities=11% Similarity=0.166 Sum_probs=52.8
Q ss_pred chhHHHHHHHhhchhhHHHHHh---cCCCcchHHHHHHHHHHHh----hhcCCCCCchhHH------------------H
Q 028221 46 EPQKFAAVHKVFGASNVSKLLS---EVPDSQRADAANSLVFEAN----LRLRDPVYGCLGA------------------I 100 (212)
Q Consensus 46 ~~q~Fa~vhKvFG~sNV~kmL~---~lp~~qR~da~~SLvYEA~----aR~rDPVyGC~Gi------------------I 100 (212)
+.+.++.+||.|...--.=+++ ++..+++.+-.+-+|++.+ +++.-|+-||+-+ +
T Consensus 142 e~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~ 221 (424)
T 2pbi_A 142 EKENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTV 221 (424)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCH
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccH
Confidence 4466777888776554444444 3444444455666677665 7888999998743 4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhhhHHH
Q 028221 101 SSLQQQVQSLQAELNA-------MRTEIMKYKYREA 129 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~-------vr~eL~~yr~q~a 129 (212)
..++.+|++|+.||.. +-++|..|..+.+
T Consensus 222 ~~~r~~veqLk~~l~~~rikvS~~~e~l~~y~e~~~ 257 (424)
T 2pbi_A 222 TAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFS 257 (424)
T ss_dssp HHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcccceeHHHHHHHHHHHHHhhc
Confidence 5677778888777743 2345666666555
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.52 E-value=73 Score=21.44 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.|..|+.++..|+.+-..++.++...+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443
No 49
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.29 E-value=51 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
.+..|+++|+.++..++.+...|..|+.....
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45567777777777777777777777765543
No 50
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.94 E-value=1.1e+02 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
....|++|++.++++++.++..+..
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQT 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777776655544
No 51
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.75 E-value=89 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028221 103 LQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 103 Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|..+...|+.++..++.|+..
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.64 E-value=71 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+..|+.+...|+.+++.++.|+..++
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.26 E-value=80 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
.|..|+.++..++.+...++.++...+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665554
No 54
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.17 E-value=53 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 028221 78 ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 78 ~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~ 119 (212)
+..|.-|+.-+ |..|+++|..|++||+..+.
T Consensus 31 le~l~~E~q~~-----------v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 31 LENMKTESQRV-----------VLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 45556666554 88999999999999998763
No 55
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.99 E-value=63 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028221 102 SLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
.+|.+|..++++|..+|.+++.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443
No 56
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.54 E-value=95 Score=20.86 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
-+-+..|..+...|+.++..++.++...++.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888877653
No 57
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.40 E-value=69 Score=23.10 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
-+..+|.+|..++++|..+|.++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777766666544
No 58
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=28.31 E-value=27 Score=30.94 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 90 RDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 90 rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+-||-..+-+=..|++||.+|++|.+++-+||++-.
T Consensus 234 QTPI~nSvTVRqDLerql~~LR~eFN~Lsq~iA~sq 269 (278)
T 1slq_A 234 QTPITNSVTVRQDLERQLGELREEFNALSQEIAMSQ 269 (278)
T ss_dssp CCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCccccchhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888999999999999999988887643
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.83 E-value=69 Score=22.66 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 73 QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
.|.+.++.-+=+++-|. --.-.-|..|+..|..++.+|..+..+|...
T Consensus 20 ~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554442 1123557778888888888888887776654
No 60
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=27.80 E-value=55 Score=22.22 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhHHHHhhcccCCC
Q 028221 116 AMRTEIMKYKYREAATASTIISS 138 (212)
Q Consensus 116 ~vr~eL~~yr~q~aA~~~~~~p~ 138 (212)
+++++|+.|-.+.+-.++.++|.
T Consensus 8 aLk~HLAAye~ska~~~s~~~p~ 30 (48)
T 2kxc_B 8 RLMQHLAEHGIQPARNMAEHIPP 30 (48)
T ss_pred HHHHHHHHHhhccchhhhccCCC
Confidence 35666777777666544455443
No 61
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.76 E-value=72 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+..|+++...|+.+|..++.|+..++.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777767666655
No 62
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=27.54 E-value=61 Score=23.90 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 103 LQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 103 Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
|+++|+.|+.+|..++.+|..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999999887764
No 63
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.45 E-value=77 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+..|+.+...|+.+|..++.|+..++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777776654
No 64
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.11 E-value=1.5e+02 Score=23.51 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 028221 73 QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATA 132 (212)
Q Consensus 73 qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~ 132 (212)
+|-|+.+--.-.|..| |-..+|.++..+++.|..+|+.++++-..--..++..+
T Consensus 17 drLD~~~rKlaaa~~r------gd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l 70 (123)
T 2lf0_A 17 DRLDAIRHQQADLSLV------EAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKL 70 (123)
T ss_dssp HHHHHHHHHHHHSCTT------TCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4556665555555555 45678999999999999999999887665555555433
No 65
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.90 E-value=80 Score=24.52 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028221 104 QQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 104 q~QI~~lqaEL~~vr~eL~~yr 125 (212)
|.-|.+++..++.+.++|..++
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666666654
No 66
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=26.84 E-value=64 Score=24.54 Aligned_cols=30 Identities=13% Similarity=0.353 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-|.-..++++|+.|+.+|..++.+|..++.
T Consensus 15 ~g~~~~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 15 RGDSRAIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455568888999999999999999988664
No 67
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.80 E-value=74 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
=.-|..|+.+|..++.+|..++.+|...+
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887777554
No 68
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.56 E-value=77 Score=23.05 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHhhchhhHHHHHhcCC-CcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 028221 52 AVHKVFGASNVSKLLSEVP-DSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 52 ~vhKvFG~sNV~kmL~~lp-~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~v 117 (212)
++|.+|--.+.-.+.+.|. ..++.+-+++|+.|+.+- ...|.+|+..|+.||..+
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHH
Confidence 4555565566666666665 346778899999998654 223888888888888875
No 69
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.56 E-value=15 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
|..|+..|+.++.+++.++.++..
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665555543
No 70
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=26.00 E-value=73 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+.---+|+++++.+.+||+.++.+|...+..
T Consensus 48 FAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 48 YAKWTKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555689999999999999999999876654
No 71
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.88 E-value=63 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
--|..||+|+..-.+|+..++.+|..
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45667777777777777777766653
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.74 E-value=83 Score=22.46 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 78 ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 78 ~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
...-+-|+..|.. ..+..+|.+|..++++|..+|.+++.+
T Consensus 13 LE~~l~e~e~~~~-------~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 13 LERQMREMEENFA-------VEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555522 234556666666666666666665543
No 73
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.52 E-value=93 Score=21.06 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
-+..|+.+...|+.++..++.++...+.
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776665554
No 74
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.29 E-value=90 Score=24.29 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
++-|-.||.+|...+.+|..++.+|..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887777764
No 75
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.68 E-value=1e+02 Score=20.57 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.+.+||..|++|+.+|..-+.+.....
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 578899999999999887765554433
No 76
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.67 E-value=91 Score=22.26 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028221 102 SLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL 121 (212)
.+|.+|..++++|..+++++
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=24.32 E-value=3.5e+02 Score=24.02 Aligned_cols=79 Identities=13% Similarity=0.268 Sum_probs=54.8
Q ss_pred hhHHHHHHHhhchhhHHHHHhcCCCcchHHH--HHHHHHHHhhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 47 PQKFAAVHKVFGASNVSKLLSEVPDSQRADA--ANSLVFEANLRLRDPVYG---CLGAISSLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 47 ~q~Fa~vhKvFG~sNV~kmL~~lp~~qR~da--~~SLvYEA~aR~rDPVyG---C~GiI~~Lq~QI~~lqaEL~~vr~eL 121 (212)
-+.|.++...||..++-++-.++.-..-+++ -..+.||=. +=|.| .++.|-..+.+|+..+.+...++..+
T Consensus 118 f~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry----~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~Ki 193 (304)
T 1ofc_X 118 FNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC----TELQDIERIMGQIERGEGKIQRRLSIKKALDQKM 193 (304)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG----GGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH----HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999998864433333 122233321 11333 45778888888888888888889999
Q ss_pred HhhhhHHH
Q 028221 122 MKYKYREA 129 (212)
Q Consensus 122 ~~yr~q~a 129 (212)
..|+..-.
T Consensus 194 ~~~~~P~~ 201 (304)
T 1ofc_X 194 SRYRAPFH 201 (304)
T ss_dssp HTCSSHHH
T ss_pred HHhcCcHH
Confidence 99887643
No 78
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.87 E-value=1.3e+02 Score=21.36 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028221 103 LQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 103 Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
|+.+++.|+.++..++.|+..|
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555555555555555544
No 79
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.74 E-value=48 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL 121 (212)
|..|+.|+.+++.++..++.+|
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555554433
No 80
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.64 E-value=1.4e+02 Score=19.48 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
+..++.++.++..+|+.++.+|...+.
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666544
No 81
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=23.58 E-value=26 Score=26.28 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028221 101 SSLQQQVQSLQAELNAM 117 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~v 117 (212)
.+||+||..|+.||+.+
T Consensus 29 k~lq~QL~~Lk~ELe~l 45 (90)
T 1ef1_C 29 ERVQKHLKALTSELANA 45 (90)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666665
No 82
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.39 E-value=98 Score=25.79 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 71 DSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 71 ~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
.+.|.++++-|+=.|. ..|..||.+|+.|+.+|...+.+-...
T Consensus 119 a~~paE~ireli~~Ae-----------rtV~kLqkeiD~LEDeL~~eKek~k~i 161 (175)
T 3mud_A 119 VENPAEVIRELICYCL-----------DTTAKNEKSIDDLEEKVAHAKEENLNM 161 (175)
T ss_dssp CSCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888988887664 558999999999999998887665443
No 83
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.36 E-value=1.3e+02 Score=21.75 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
+-.|..|+.+...++.+++.++.+-...+.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999988888877777665554444
No 84
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.11 E-value=82 Score=26.63 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 96 CLGAISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 96 C~GiI~~Lq~QI~~lqaEL~~vr~e 120 (212)
|+|.|..||.++..|++|-+.++.+
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999998887655
No 85
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.86 E-value=1.3e+02 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
+.+|+-.++.|..+...+.+|.++.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666666666666666655543
No 86
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.73 E-value=98 Score=26.22 Aligned_cols=31 Identities=10% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.-|..|+.++..++.++-.+++++.+||.+.
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888888864
No 87
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.46 E-value=98 Score=26.20 Aligned_cols=9 Identities=33% Similarity=0.128 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 028221 76 DAANSLVFE 84 (212)
Q Consensus 76 da~~SLvYE 84 (212)
.++..|+.|
T Consensus 20 ~LV~~L~~E 28 (190)
T 4emc_A 20 LLVANLVNE 28 (190)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 366666665
No 88
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.43 E-value=95 Score=21.42 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 101 SSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 101 ~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
-+|-+|++.|+.|-..+|.||..-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhh
Confidence 467888899998888888888753
No 89
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.35 E-value=90 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+.---+|+++++.+.+||+.+..+|..
T Consensus 31 FAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 31 YAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344567999999999999999888864
No 90
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.35 E-value=79 Score=23.34 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 028221 102 SLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
.|+.+|+.|+.|+..+++-|..+
T Consensus 54 ~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 54 RLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 46777777777777776666543
No 91
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=22.25 E-value=84 Score=23.96 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRT 119 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~ 119 (212)
+..|+.+|++|+.+|..++.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55566777777777766655
No 92
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=22.15 E-value=1.1e+02 Score=23.57 Aligned_cols=29 Identities=10% Similarity=0.361 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
-+.|..++.+|..+..++..++.||++.+
T Consensus 75 d~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 75 NTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778888888888888887765
No 93
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=22.01 E-value=84 Score=26.65 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=18.3
Q ss_pred hhHHHHHhcCCC--cchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 60 SNVSKLLSEVPD--SQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 60 sNV~kmL~~lp~--~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
..|...|++=|+ .++.+.+. ..++-.|.. |+|+-.++|++.+++++..++.+|...
T Consensus 34 ~~V~~yL~~~PdFf~~~~~Ll~------~L~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEHDELIP------ELRIPHQPG---DAVSLVERQVRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhCHHHHH------hCCCCCCCC---CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555553 34555554 445667764 677777888888877777777766443
No 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.95 E-value=1.9e+02 Score=21.54 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+..|+.++..++.|++.++.|+...
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 95
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=21.78 E-value=45 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTE 120 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~e 120 (212)
...|..|++||+.|+.+|..+++.
T Consensus 21 ~~~~~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888999999999999888753
No 96
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.75 E-value=96 Score=22.83 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
++-|-.||..|...+.+|..++.+|..
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkd 30 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKD 30 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888877764
No 97
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.72 E-value=1.1e+02 Score=22.82 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
...+|+++++.++.++..++.++..|..
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~~~ 36 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677666666666666655
No 98
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=21.61 E-value=90 Score=24.29 Aligned_cols=27 Identities=7% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.+..++++++.+.++++.++.++...|
T Consensus 139 ~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 139 AEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345677888888888888777776544
No 99
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=21.51 E-value=1.7e+02 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
--|..++++|++|+.+|+.++.+..
T Consensus 32 ~~v~~~~~~in~L~~~I~~~~k~a~ 56 (129)
T 2gr7_A 32 KGVTNLAGQVNNLEGKVNKVGKRAD 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888776654
No 100
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.04 E-value=1e+02 Score=22.97 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
.-+|+.+|..++.|++.++.++...+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777766665544
No 101
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=20.99 E-value=1.3e+02 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 105 QQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 105 ~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
++-++|++.|-.++.||+.|+...
T Consensus 10 qERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 10 QERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445678889999999999998743
No 102
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.95 E-value=1e+02 Score=19.46 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+.+|+.+++.|-.+-..+++|+.+.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35677788887777777777777655
No 103
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.77 E-value=1.7e+02 Score=18.44 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
|..++.+-...++|+.+++++|+..++--|
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaikylia 33 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKYLIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677788888888877766433
No 104
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.71 E-value=80 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
..|..|+.+|..++.+...+.++....+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666655555555444443
No 105
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.51 E-value=1.1e+02 Score=21.31 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 98 GAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 98 GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
..+..|+.+++.++.+...++.+|...
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667778888888888887777654
No 106
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.49 E-value=1e+02 Score=22.67 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
-.+|+.+|.+++.||+.++.+...++
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888887755544
No 107
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.37 E-value=1.7e+02 Score=18.55 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+.+|+.+++.|-.+...+.+|.++.+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45677777777777777777776654
No 108
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.07 E-value=1.2e+02 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIM 122 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~ 122 (212)
---|..|.++|+.|+.||..++++-.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~ 60 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34466666666666666666654433
Done!