Query 028221
Match_columns 212
No_of_seqs 125 out of 309
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 13:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028221.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028221hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 70.6 2.8 0.0002 27.0 4.2 27 97-123 32-58 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 69.8 5.6 0.0004 26.8 5.9 31 97-127 51-81 (88)
3 d1urfa_ a.2.6.1 (A:) Protein k 62.2 9.9 0.00072 26.2 6.0 20 56-75 24-43 (81)
4 d1hcia4 a.7.1.1 (A:633-746) al 57.9 9.5 0.0007 25.7 5.4 54 75-128 14-67 (114)
5 d1am9a_ a.38.1.1 (A:) SREBP-1a 57.5 7.5 0.00055 25.8 4.6 29 97-125 49-77 (80)
6 d1nkpb_ a.38.1.1 (B:) Max prot 42.2 18 0.0013 23.8 4.5 31 97-127 46-76 (83)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 37.9 25 0.0018 22.8 4.8 30 97-126 46-75 (79)
8 d1slqa_ f.47.1.1 (A:) VP4 memb 30.7 17 0.0013 30.2 3.5 35 90-124 229-263 (270)
9 d3coqa1 g.38.1.1 (A:8-48) Gal4 29.6 12 0.00085 22.0 1.6 15 20-34 2-16 (41)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 27.8 48 0.0035 22.9 5.2 31 99-129 9-39 (133)
11 d1r8da_ a.6.1.3 (A:) Multidrug 27.6 54 0.004 21.8 5.3 20 102-121 86-105 (109)
12 d1clda_ g.38.1.1 (A:) CD2-Lac9 23.5 15 0.0011 20.7 1.3 16 20-35 1-16 (33)
13 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.3 52 0.0038 22.7 4.6 28 100-127 3-30 (133)
14 d1pyia1 g.38.1.1 (A:30-71) PPR 23.0 20 0.0015 21.2 1.9 17 19-35 2-18 (42)
15 d1zmec1 g.38.1.1 (C:31-66) PUT 21.6 21 0.0015 20.7 1.7 15 20-34 2-16 (36)
16 d1vf6a_ a.194.1.1 (A:) Associa 21.5 37 0.0027 22.2 3.1 21 97-117 36-56 (58)
17 d1u5ta1 a.4.5.54 (A:20-164) Va 20.5 36 0.0027 25.6 3.3 29 102-130 5-33 (145)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.56 E-value=2.8 Score=26.98 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMK 123 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~ 123 (212)
+-.|..||+|++.+++|+..++.+...
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999998877654
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.80 E-value=5.6 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+-.|..|+.+++.++.+++.++.+....+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~ 81 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999988888888777665544
No 3
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.19 E-value=9.9 Score=26.18 Aligned_cols=20 Identities=25% Similarity=0.239 Sum_probs=15.3
Q ss_pred hhchhhHHHHHhcCCCcchH
Q 028221 56 VFGASNVSKLLSEVPDSQRA 75 (212)
Q Consensus 56 vFG~sNV~kmL~~lp~~qR~ 75 (212)
.=|+.||++++..-...+|.
T Consensus 24 keGaEnm~k~~~~~~~~DrK 43 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRK 43 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHccCCcccHH
Confidence 45999999999976555553
No 4
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.87 E-value=9.5 Score=25.72 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221 75 ADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE 128 (212)
Q Consensus 75 ~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~ 128 (212)
.+-+.+-+-|+..-+.++++|-.+.|..+..+.+.++.||...+.+|.......
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g 67 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDH 67 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777778889999999999999999999999999999888776543
No 5
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.52 E-value=7.5 Score=25.83 Aligned_cols=29 Identities=34% Similarity=0.354 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYK 125 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr 125 (212)
+-.|..|+.+++.+++|++.++.++...+
T Consensus 49 ~~yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56799999999999999999988877654
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.19 E-value=18 Score=23.85 Aligned_cols=31 Identities=6% Similarity=0.176 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+-.|..|+++++.++.+++.++.+......+
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~ 76 (83)
T d1nkpb_ 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558889999999998888887777665544
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.91 E-value=25 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221 97 LGAISSLQQQVQSLQAELNAMRTEIMKYKY 126 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~ 126 (212)
+-.|..|+.++..++.++..++.+....+.
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~ 75 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999988888888777665543
No 8
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]}
Probab=30.71 E-value=17 Score=30.16 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028221 90 RDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124 (212)
Q Consensus 90 rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~y 124 (212)
+-|+--.+-+=+.|++||.+|++|.+.+-+|+++-
T Consensus 229 qTpi~Ns~TVrqDLErqi~dLr~efN~ls~eiais 263 (270)
T d1slqa_ 229 QTPITNSVTVRQDLERQLGELREEFNALSQEIAMS 263 (270)
T ss_dssp CCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCccCceeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666899999999999999999888763
No 9
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.57 E-value=12 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.972 Sum_probs=12.8
Q ss_pred cCChhhHHhhhcCCC
Q 028221 20 TPCAACKLLRRRCAE 34 (212)
Q Consensus 20 ~~CAACK~qRRkC~~ 34 (212)
++|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 589999999999964
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.83 E-value=48 Score=22.86 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028221 99 AISSLQQQVQSLQAELNAMRTEIMKYKYREA 129 (212)
Q Consensus 99 iI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~a 129 (212)
.+..|+++|+.+++++..++..+..|.....
T Consensus 9 ~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~ 39 (133)
T d1fxkc_ 9 QLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777776665433
No 11
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=27.61 E-value=54 Score=21.85 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028221 102 SLQQQVQSLQAELNAMRTEI 121 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL 121 (212)
.|+++++.++.+++.++..|
T Consensus 86 ~l~~~~~~l~~~~~~l~~~l 105 (109)
T d1r8da_ 86 ILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444
No 12
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=23.46 E-value=15 Score=20.75 Aligned_cols=16 Identities=25% Similarity=0.862 Sum_probs=13.3
Q ss_pred cCChhhHHhhhcCCCC
Q 028221 20 TPCAACKLLRRRCAEE 35 (212)
Q Consensus 20 ~~CAACK~qRRkC~~d 35 (212)
.+|..||..+.||..+
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 4799999999999754
No 13
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.25 E-value=52 Score=22.68 Aligned_cols=28 Identities=7% Similarity=0.247 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221 100 ISSLQQQVQSLQAELNAMRTEIMKYKYR 127 (212)
Q Consensus 100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q 127 (212)
+..|..|++.++.+|..++++|..+...
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~ 30 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRAT 30 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777776666666554
No 14
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.99 E-value=20 Score=21.16 Aligned_cols=17 Identities=35% Similarity=0.919 Sum_probs=13.7
Q ss_pred CcCChhhHHhhhcCCCC
Q 028221 19 VTPCAACKLLRRRCAEE 35 (212)
Q Consensus 19 ~~~CAACK~qRRkC~~d 35 (212)
..+|..||..+.||..+
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 45899999999999654
No 15
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.56 E-value=21 Score=20.67 Aligned_cols=15 Identities=20% Similarity=0.744 Sum_probs=11.3
Q ss_pred cCChhhHHhhhcCCC
Q 028221 20 TPCAACKLLRRRCAE 34 (212)
Q Consensus 20 ~~CAACK~qRRkC~~ 34 (212)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 478888888888854
No 16
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49 E-value=37 Score=22.17 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028221 97 LGAISSLQQQVQSLQAELNAM 117 (212)
Q Consensus 97 ~GiI~~Lq~QI~~lqaEL~~v 117 (212)
+-.|..||+-|++|+.+++.+
T Consensus 36 F~qiL~lQ~SiqqLk~Qvn~~ 56 (58)
T d1vf6a_ 36 FNQILTLQQSIKQLKGQLNHI 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999875
No 17
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.52 E-value=36 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221 102 SLQQQVQSLQAELNAMRTEIMKYKYREAA 130 (212)
Q Consensus 102 ~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA 130 (212)
.+++|..+++.||+..|..|..+-..|..
T Consensus 5 l~e~q~~ql~~QL~vF~~~L~~FA~kH~~ 33 (145)
T d1u5ta1 5 ILEKQSVELRDQLMVFQERLVEFAKKHNS 33 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46889999999999999999998887763
Done!