Query 028222
Match_columns 212
No_of_seqs 155 out of 1368
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 6.8E-49 1.5E-53 363.3 19.9 210 1-210 464-673 (759)
2 PLN02993 lupeol synthase 100.0 2E-48 4.3E-53 360.9 19.7 209 1-209 464-672 (763)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2.1E-41 4.7E-46 312.9 20.0 206 1-208 352-557 (634)
4 KOG0497 Oxidosqualene-lanoster 100.0 4.4E-42 9.6E-47 308.3 14.2 211 1-211 463-673 (760)
5 TIGR01507 hopene_cyclase squal 100.0 2E-38 4.3E-43 293.1 18.3 191 1-208 359-551 (635)
6 TIGR01787 squalene_cyclas squa 100.0 3.3E-37 7.1E-42 284.7 18.9 198 2-209 344-542 (621)
7 cd02892 SQCY_1 Squalene cyclas 100.0 2E-36 4.4E-41 281.0 19.5 204 1-207 353-556 (634)
8 cd02889 SQCY Squalene cyclase 100.0 3.4E-28 7.4E-33 210.7 19.5 193 2-200 71-263 (348)
9 PLN03012 Camelliol C synthase 100.0 2.2E-28 4.8E-33 227.1 15.4 168 3-199 525-724 (759)
10 PLN02993 lupeol synthase 99.9 1.3E-26 2.9E-31 215.6 15.2 168 3-199 525-724 (763)
11 TIGR03463 osq_cycl 2,3-oxidosq 99.9 8.3E-26 1.8E-30 209.4 15.2 165 3-199 412-606 (634)
12 TIGR01507 hopene_cyclase squal 99.9 1.2E-25 2.5E-30 208.3 15.5 167 3-209 415-613 (635)
13 COG1657 SqhC Squalene cyclase 99.9 5.8E-25 1.3E-29 195.8 10.1 190 3-209 245-434 (517)
14 TIGR01787 squalene_cyclas squa 99.9 3.6E-23 7.8E-28 191.6 16.4 164 3-202 400-593 (621)
15 cd02892 SQCY_1 Squalene cyclas 99.9 6.3E-21 1.4E-25 177.5 15.9 165 3-199 412-606 (634)
16 PF13249 Prenyltrans_2: Prenyl 99.9 1.9E-21 4.1E-26 142.4 7.7 109 56-197 1-113 (113)
17 cd02889 SQCY Squalene cyclase 99.8 2.6E-20 5.6E-25 161.4 14.3 163 3-197 11-212 (348)
18 cd00688 ISOPREN_C2_like This g 99.8 1.1E-19 2.4E-24 151.5 15.9 166 3-199 64-229 (300)
19 cd02897 A2M_2 Proteins similar 99.7 6.4E-17 1.4E-21 137.6 16.2 176 3-199 61-280 (292)
20 cd02890 PTase Protein prenyltr 99.7 5.4E-17 1.2E-21 137.5 14.3 165 5-209 62-228 (286)
21 cd00688 ISOPREN_C2_like This g 99.7 1.3E-16 2.7E-21 133.0 14.7 163 3-205 116-287 (300)
22 cd02890 PTase Protein prenyltr 99.7 8.4E-17 1.8E-21 136.4 13.6 149 24-209 29-179 (286)
23 TIGR02474 pec_lyase pectate ly 99.7 2.2E-16 4.7E-21 132.5 14.8 159 20-195 41-225 (290)
24 PLN03201 RAB geranylgeranyl tr 99.7 2.8E-16 6.2E-21 135.0 15.5 142 28-209 43-185 (316)
25 cd02894 GGTase-II Geranylgeran 99.7 3E-16 6.6E-21 133.3 13.9 166 5-210 64-230 (287)
26 PF13243 Prenyltrans_1: Prenyl 99.7 2E-17 4.3E-22 120.5 3.7 108 52-191 1-108 (109)
27 PF13249 Prenyltrans_2: Prenyl 99.7 5.2E-17 1.1E-21 118.7 5.8 103 3-146 7-111 (113)
28 cd02896 complement_C3_C4_C5 Pr 99.7 2.3E-15 5E-20 128.5 15.5 165 4-200 65-229 (297)
29 KOG0497 Oxidosqualene-lanoster 99.7 3.5E-16 7.6E-21 141.9 9.3 151 19-198 559-722 (760)
30 cd02894 GGTase-II Geranylgeran 99.7 1.8E-15 4E-20 128.5 12.9 164 4-209 113-278 (287)
31 KOG0366 Protein geranylgeranyl 99.6 9.7E-15 2.1E-19 119.3 11.2 122 52-204 68-190 (329)
32 cd02893 FTase Protein farnesyl 99.6 2.5E-14 5.5E-19 122.2 14.0 149 25-209 30-179 (299)
33 PLN03201 RAB geranylgeranyl tr 99.6 2.8E-14 6.1E-19 122.7 12.6 164 4-209 69-233 (316)
34 cd02895 GGTase-I Geranylgerany 99.6 7E-14 1.5E-18 119.8 13.9 174 5-210 67-250 (307)
35 PLN02710 farnesyltranstransfer 99.6 3.8E-14 8.1E-19 125.7 12.5 135 47-209 89-224 (439)
36 cd02893 FTase Protein farnesyl 99.6 8E-14 1.7E-18 119.1 14.1 167 4-209 60-228 (299)
37 cd02895 GGTase-I Geranylgerany 99.5 8.2E-14 1.8E-18 119.4 12.7 172 4-210 125-299 (307)
38 PLN02710 farnesyltranstransfer 99.5 5.9E-13 1.3E-17 118.1 13.9 167 4-209 105-272 (439)
39 cd02897 A2M_2 Proteins similar 99.5 5.2E-13 1.1E-17 113.6 12.3 114 52-190 51-174 (292)
40 PF13243 Prenyltrans_1: Prenyl 99.4 2.7E-14 5.9E-19 103.9 0.7 69 129-199 1-69 (109)
41 PF07678 A2M_comp: A-macroglob 99.4 7E-12 1.5E-16 104.3 13.6 172 2-198 9-231 (246)
42 cd02896 complement_C3_C4_C5 Pr 99.4 3.6E-12 7.8E-17 108.8 12.0 117 49-191 51-185 (297)
43 cd02891 A2M_like Proteins simi 99.4 8.9E-12 1.9E-16 104.9 12.5 116 48-190 47-172 (282)
44 COG5029 CAL1 Prenyltransferase 99.3 2.4E-11 5.2E-16 101.9 11.5 155 4-204 139-300 (342)
45 KOG0365 Beta subunit of farnes 99.3 7.9E-11 1.7E-15 99.8 12.5 128 46-203 116-246 (423)
46 PF09492 Pec_lyase: Pectic aci 99.3 1.5E-11 3.2E-16 103.6 7.7 177 4-197 1-222 (289)
47 cd02891 A2M_like Proteins simi 99.2 6.8E-10 1.5E-14 93.4 15.3 165 3-198 61-269 (282)
48 KOG0366 Protein geranylgeranyl 99.2 2.8E-10 6E-15 93.4 11.5 160 4-205 127-288 (329)
49 COG1657 SqhC Squalene cyclase 99.2 2.6E-11 5.6E-16 108.9 5.4 147 20-201 327-484 (517)
50 COG5029 CAL1 Prenyltransferase 99.1 3.4E-09 7.3E-14 89.1 14.1 165 6-208 90-255 (342)
51 TIGR02474 pec_lyase pectate ly 99.0 9.8E-10 2.1E-14 92.6 9.2 92 101-195 44-156 (290)
52 PF07678 A2M_comp: A-macroglob 98.9 6.3E-09 1.4E-13 86.6 9.4 108 56-188 3-125 (246)
53 KOG0367 Protein geranylgeranyl 98.9 5E-09 1.1E-13 87.4 7.4 131 52-209 176-310 (347)
54 KOG0367 Protein geranylgeranyl 98.8 1.7E-07 3.8E-12 78.4 12.2 80 129-208 176-260 (347)
55 PF09492 Pec_lyase: Pectic aci 98.6 3.1E-07 6.7E-12 77.6 9.3 97 101-200 39-160 (289)
56 PF01122 Cobalamin_bind: Eukar 98.6 7.7E-07 1.7E-11 76.3 11.7 92 99-197 185-279 (326)
57 COG1689 Uncharacterized protei 98.3 2.2E-06 4.7E-11 69.0 7.3 55 3-70 18-74 (274)
58 PF00432 Prenyltrans: Prenyltr 98.3 1.7E-06 3.6E-11 52.7 5.2 41 129-169 3-44 (44)
59 KOG0365 Beta subunit of farnes 98.2 1.7E-05 3.6E-10 67.9 10.8 156 4-199 133-291 (423)
60 PF00432 Prenyltrans: Prenyltr 98.1 6.1E-06 1.3E-10 50.2 4.3 41 52-113 3-43 (44)
61 PF01122 Cobalamin_bind: Eukar 97.4 0.00045 9.8E-09 59.5 7.3 109 19-167 183-292 (326)
62 COG1689 Uncharacterized protei 97.3 0.00062 1.3E-08 55.1 6.0 75 6-113 196-271 (274)
63 PLN02592 ent-copalyl diphospha 96.4 0.0044 9.5E-08 59.5 5.0 61 52-140 117-177 (800)
64 TIGR01577 oligosac_amyl oligos 96.3 0.057 1.2E-06 50.8 11.8 125 17-167 292-425 (616)
65 TIGR01535 glucan_glucosid gluc 96.0 0.07 1.5E-06 50.5 10.4 119 19-168 294-415 (648)
66 PLN02592 ent-copalyl diphospha 95.9 0.016 3.5E-07 55.7 5.9 59 127-188 115-176 (800)
67 PF07470 Glyco_hydro_88: Glyco 95.8 0.14 2.9E-06 44.4 11.0 101 48-168 213-332 (336)
68 PLN02279 ent-kaur-16-ene synth 95.8 0.011 2.4E-07 56.8 4.6 60 52-137 75-134 (784)
69 KOG1366 Alpha-macroglobulin [P 95.7 0.088 1.9E-06 53.8 10.6 60 5-71 985-1045(1436)
70 PF07470 Glyco_hydro_88: Glyco 95.5 0.15 3.3E-06 44.0 10.1 180 6-203 107-305 (336)
71 COG2373 Large extracellular al 95.1 0.21 4.5E-06 51.8 11.0 101 19-143 1167-1268(1621)
72 PLN02279 ent-kaur-16-ene synth 94.3 0.066 1.4E-06 51.6 5.0 58 127-187 73-135 (784)
73 cd00249 AGE AGE domain; N-acyl 94.1 3 6.4E-05 36.4 14.7 119 6-146 31-158 (384)
74 PF07944 DUF1680: Putative gly 93.4 0.65 1.4E-05 42.8 9.5 120 6-142 44-166 (520)
75 COG4225 Predicted unsaturated 93.3 2.9 6.3E-05 36.4 12.6 137 49-193 158-308 (357)
76 cd00249 AGE AGE domain; N-acyl 92.7 1.7 3.8E-05 37.8 10.9 129 50-196 14-159 (384)
77 KOG1366 Alpha-macroglobulin [P 92.2 0.58 1.3E-05 48.1 8.0 94 103-198 948-1046(1436)
78 TIGR01535 glucan_glucosid gluc 92.2 1.4 2.9E-05 41.9 10.0 122 48-189 249-386 (648)
79 TIGR01577 oligosac_amyl oligos 85.2 2.2 4.7E-05 40.3 6.1 69 127-199 256-337 (616)
80 PF07221 GlcNAc_2-epim: N-acyl 84.8 7.4 0.00016 33.6 8.9 94 100-198 20-127 (346)
81 cd04794 euk_LANCL eukaryotic L 83.0 29 0.00063 30.0 11.8 28 45-72 183-210 (343)
82 COG4225 Predicted unsaturated 82.3 7.6 0.00016 33.9 7.6 77 48-145 230-309 (357)
83 PF07944 DUF1680: Putative gly 81.7 5.9 0.00013 36.6 7.3 79 103-185 62-157 (520)
84 COG2373 Large extracellular al 81.2 7.6 0.00017 40.8 8.5 88 100-189 1170-1265(1621)
85 KOG2787 Lanthionine synthetase 77.3 36 0.00078 29.7 10.0 138 26-188 221-361 (403)
86 PLN02909 Endoglucanase 69.4 40 0.00087 31.0 9.1 92 46-140 120-222 (486)
87 PF07221 GlcNAc_2-epim: N-acyl 68.7 22 0.00049 30.6 7.2 98 24-146 22-123 (346)
88 PLN03009 cellulase 67.4 53 0.0011 30.3 9.5 27 121-147 111-137 (495)
89 COG1331 Highly conserved prote 66.6 1.2E+02 0.0027 29.0 12.4 40 23-66 411-450 (667)
90 PF00759 Glyco_hydro_9: Glycos 66.1 29 0.00063 31.0 7.6 93 47-140 95-196 (444)
91 COG1331 Highly conserved prote 65.3 74 0.0016 30.5 10.1 59 7-70 251-317 (667)
92 cd04794 euk_LANCL eukaryotic L 63.8 73 0.0016 27.4 9.4 41 159-199 171-211 (343)
93 cd04792 LanM-like LanM-like pr 60.5 1.2E+02 0.0026 29.6 11.2 74 123-196 606-687 (825)
94 PLN02266 endoglucanase 59.9 1.2E+02 0.0025 28.2 10.3 92 46-140 130-232 (510)
95 PLN02308 endoglucanase 58.8 71 0.0015 29.5 8.7 89 49-140 115-214 (492)
96 COG3387 SGA1 Glucoamylase and 58.8 84 0.0018 29.9 9.4 133 18-168 283-429 (612)
97 PLN02345 endoglucanase 56.8 83 0.0018 28.9 8.7 90 48-140 84-184 (469)
98 PF10022 DUF2264: Uncharacteri 56.2 67 0.0015 28.4 7.8 64 127-199 132-198 (361)
99 COG2942 N-acyl-D-glucosamine 2 55.4 64 0.0014 28.8 7.5 87 100-189 54-151 (388)
100 PF05592 Bac_rhamnosid: Bacter 55.3 1.5E+02 0.0032 27.0 10.3 78 49-142 168-246 (509)
101 KOG3760 Heparan sulfate-glucur 52.7 20 0.00043 32.2 3.8 21 50-70 380-400 (594)
102 PLN02613 endoglucanase 52.5 95 0.0021 28.8 8.4 92 46-140 112-214 (498)
103 PF11329 DUF3131: Protein of u 52.0 99 0.0021 27.4 8.1 91 23-120 34-125 (367)
104 PF05147 LANC_like: Lanthionin 51.5 92 0.002 26.4 8.0 136 24-191 168-312 (355)
105 cd04791 LanC_SerThrkinase Lant 49.7 1.6E+02 0.0034 24.8 11.2 142 22-193 138-281 (321)
106 cd04792 LanM-like LanM-like pr 49.6 2.3E+02 0.005 27.7 11.1 93 25-143 589-682 (825)
107 KOG3760 Heparan sulfate-glucur 43.6 27 0.00059 31.3 3.3 67 126-194 379-462 (594)
108 PLN03009 cellulase 43.4 1.4E+02 0.003 27.7 8.0 91 47-140 114-215 (495)
109 cd04791 LanC_SerThrkinase Lant 42.4 2E+02 0.0044 24.0 12.4 96 26-146 86-182 (321)
110 PF03991 Prion_octapep: Copper 42.1 15 0.00032 13.9 0.7 6 6-11 2-7 (8)
111 cd00194 UBA Ubiquitin Associat 39.4 50 0.0011 18.4 3.1 23 159-187 16-38 (38)
112 PF00759 Glyco_hydro_9: Glycos 39.0 45 0.00097 29.8 4.2 27 121-147 92-118 (444)
113 TIGR03046 PS_II_psbV2 photosys 38.4 68 0.0015 24.8 4.5 45 27-71 96-152 (155)
114 PF00723 Glyco_hydro_15: Glyco 37.3 2.1E+02 0.0045 25.7 8.2 69 98-167 123-196 (448)
115 PLN02909 Endoglucanase 33.2 44 0.00095 30.8 3.1 22 174-195 122-143 (486)
116 PLN00119 endoglucanase 32.0 3.2E+02 0.007 25.3 8.5 90 48-140 119-219 (489)
117 PRK13621 psbV cytochrome c-550 31.9 1.1E+02 0.0024 24.1 4.7 46 26-71 106-163 (170)
118 PLN02175 endoglucanase 31.4 3.4E+02 0.0073 25.1 8.5 40 101-140 169-211 (484)
119 PF10022 DUF2264: Uncharacteri 31.2 3.7E+02 0.0081 23.7 15.2 26 44-70 169-194 (361)
120 PLN02171 endoglucanase 31.1 2.9E+02 0.0062 26.5 8.2 90 48-140 118-218 (629)
121 PF00627 UBA: UBA/TS-N domain; 30.3 1E+02 0.0022 17.2 3.3 20 160-185 18-37 (37)
122 PF03663 Glyco_hydro_76: Glyco 28.8 3.4E+02 0.0074 23.8 8.0 155 21-193 86-261 (370)
123 PF06662 C5-epim_C: D-glucuron 27.1 1.3E+02 0.0028 24.0 4.5 94 101-197 30-141 (189)
124 PF09282 Mago-bind: Mago bindi 26.4 13 0.00028 19.9 -0.9 12 59-70 5-16 (27)
125 smart00165 UBA Ubiquitin assoc 26.4 88 0.0019 17.2 2.6 21 160-186 17-37 (37)
126 PF05382 Amidase_5: Bacterioph 26.1 1.1E+02 0.0024 23.4 3.8 44 129-172 2-46 (145)
127 PLN02266 endoglucanase 26.1 87 0.0019 29.1 3.8 21 175-195 133-153 (510)
128 cd04434 LanC_like LanC-like pr 25.9 3.8E+02 0.0083 22.2 12.5 100 25-145 101-200 (343)
129 PLN02171 endoglucanase 25.2 5.3E+02 0.011 24.7 8.8 24 123-146 116-139 (629)
130 COG3533 Uncharacterized protei 23.7 6.2E+02 0.013 23.8 11.0 102 24-143 67-170 (589)
131 PLN02420 endoglucanase 23.2 6.2E+02 0.014 23.7 9.2 92 46-140 127-229 (525)
132 KOG2977 Glycosyltransferase [G 22.4 1.5E+02 0.0033 25.5 4.2 46 47-111 81-126 (323)
133 COG3533 Uncharacterized protei 21.4 3.8E+02 0.0083 25.1 6.8 67 122-189 84-167 (589)
134 PF15144 DUF4576: Domain of un 21.3 1.2E+02 0.0027 20.6 2.8 24 50-73 56-79 (88)
135 COG2942 N-acyl-D-glucosamine 2 20.8 6.2E+02 0.013 22.7 13.1 94 24-140 56-151 (388)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=6.8e-49 Score=363.32 Aligned_cols=210 Identities=58% Similarity=1.190 Sum_probs=196.6
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
+||+.++|||+||+.+++|||+||||++|+|++++...++..++.++.++++.+||+||+++||+||||+.|+..++..|
T Consensus 464 ~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~ 543 (759)
T PLN03012 464 MYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEW 543 (759)
T ss_pred hCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHH
Confidence 68999999999999999999999999999998887666655566778889999999999999999999999999999999
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
++.+||.|.|+++++|++++++|+.||.+|..+....+.++.+++.++|+||++||++.|++||||+|+|+++++|+|++
T Consensus 544 le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~ 623 (759)
T PLN03012 544 LELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWF 623 (759)
T ss_pred HHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHH
Confidence 99999999999999999999999999999999988777777777889999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccccc
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR 210 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~ 210 (212)
||.||.++|.+..+.+.|+||++||++.|++||||++++.++.+..|+.+
T Consensus 624 aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~ 673 (759)
T PLN03012 624 ALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ 673 (759)
T ss_pred HHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence 99999999997655799999999999999999999999999999999874
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2e-48 Score=360.87 Aligned_cols=209 Identities=55% Similarity=1.159 Sum_probs=195.4
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
+||+.++|||+||+.+++|||+||||++|+|++++.+.++..+|.++.++++.+||+||+++||+||||+.|+.+++..|
T Consensus 464 ~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~ 543 (763)
T PLN02993 464 MYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKW 543 (763)
T ss_pred hCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhH
Confidence 68999999999999999999999999999998888777655556677889999999999999999999999999999999
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
++.+|+.|.|+++++|++++++|+.||.+|..+....+.++.++++++|+||++||++.|++||||+|+|+.+++|+|++
T Consensus 544 le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~ 623 (763)
T PLN02993 544 LELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWF 623 (763)
T ss_pred HHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHH
Confidence 99999999999999999999999999999999977667777788889999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
||.||.++|..+.+.+.|+||++||+++|++|||||+++.++.+..|+.
T Consensus 624 aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~ 672 (763)
T PLN02993 624 ALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIP 672 (763)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCccccc
Confidence 9999999999864568999999999999999999999999999999985
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=2.1e-41 Score=312.93 Aligned_cols=206 Identities=39% Similarity=0.734 Sum_probs=182.4
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
+||+.++|||+|++.++.+||+||||++|+||..+...+.. ......++++.++++||+++||+||||+.|+..+...|
T Consensus 352 ~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~ 430 (634)
T TIGR03463 352 FFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRV 430 (634)
T ss_pred cCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHH
Confidence 58999999999999999999999999999999987543210 00124568999999999999999999999998888999
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
++.+|+.|.|++.++|++++++|+.||.+|..+....+..+.+++.++++||++||++.|++||+|++.|+.++.|+|++
T Consensus 431 l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~ 510 (634)
T TIGR03463 431 LELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFH 510 (634)
T ss_pred HhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHH
Confidence 99999999999999999999999999999999876555445567888999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~ 208 (212)
++.||.++|... ..+.++||++||+++|++||||+....++.+..|+
T Consensus 511 al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 557 (634)
T TIGR03463 511 GVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWGEVYESCLQARYV 557 (634)
T ss_pred HHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCccCccCcccccccc
Confidence 999999999875 57899999999999999999999988887766665
No 4
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=308.30 Aligned_cols=211 Identities=58% Similarity=1.127 Sum_probs=204.4
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
||||.++|||+||+.+++||.+||||.+|.+++.+...|.+.++..++.+++-.+|+.|+.+|+.+||+..+++.+...|
T Consensus 463 ~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~w 542 (760)
T KOG0497|consen 463 MYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEW 542 (760)
T ss_pred heeccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHH
Confidence 69999999999999999999999999999999998888878889999999999999999999999999999999999999
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
++.++|.|.|++++++..++++|..+|.+|.++.+..|++++++|...|.+|+.||.+.|.+||+|+|.|++|++|+|.+
T Consensus 543 LE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~F 622 (760)
T KOG0497|consen 543 LELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWF 622 (760)
T ss_pred HHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccccC
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRI 211 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~~ 211 (212)
++.+|.++|....+.+.+++|++||++.|++|||||+++.++++..||++.
T Consensus 623 a~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~ 673 (760)
T KOG0497|consen 623 ALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLE 673 (760)
T ss_pred hcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccc
Confidence 999999999998789999999999999999999999999999999999864
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2e-38 Score=293.06 Aligned_cols=191 Identities=24% Similarity=0.391 Sum_probs=168.6
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
+||+.++|||+|++.++.+||+||||.+|+||..+. .+ ..+.++++++++++||+++||+||||+.|+..++..+
T Consensus 359 ~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~-~~----~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~ 433 (635)
T TIGR01507 359 KRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR-LP----DERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDL 433 (635)
T ss_pred cCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC-CC----ccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhH
Confidence 478899999999999999999999999999998873 22 1245678999999999999999999999998888888
Q ss_pred hhhcCcccccch--hhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHH
Q 028222 81 IELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYST 158 (212)
Q Consensus 81 ~~~l~~~e~~~~--~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T 158 (212)
++.+| |++ +++|++++++|+.+|++|..++.. . ..++|+||++||++.|++||+|++.|+.+++|+|
T Consensus 434 l~~~~----f~d~~~~~D~~~~d~Ta~~l~al~~~g~~--~-----~~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T 502 (635)
T TIGR01507 434 LNHIP----FCDFGAVTDPPTADVTARVLECLGSFGYD--D-----AWPVIERAVEYLKREQEPDGSWFGRWGVNYLYGT 502 (635)
T ss_pred HhcCC----ccccccccCCCCccHHHHHHHHHHHhCCC--c-----hhHHHHHHHHHHHHccCCCCCCccCCCCccccHH
Confidence 89888 766 678999999999999999987521 1 1578999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~ 208 (212)
+.++.+|..+|... ..+.|+||++||+++|++||||++.+.++.+..|.
T Consensus 503 ~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~ 551 (635)
T TIGR01507 503 GAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYA 551 (635)
T ss_pred HHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCccccccccc
Confidence 99999999999875 57899999999999999999999988888776664
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=3.3e-37 Score=284.72 Aligned_cols=198 Identities=36% Similarity=0.721 Sum_probs=173.5
Q ss_pred CCCCCC-CccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 2 FRHISK-GGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 2 ~~~~~~-Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
||++.+ |||+|++.++++||+|||+.+++++..+... +.+..+++++++++||+++||+||||+.|+.+++..+
T Consensus 344 ~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~ 418 (621)
T TIGR01787 344 YRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEW 418 (621)
T ss_pred hCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHH
Confidence 555554 9999999999999999999999887666442 1346789999999999999999999999998888899
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
++.++|.|.|++.++|++++++|+++|++|..++. +.+++.++|+||++||++.|++||+|++.|+.+++|+|++
T Consensus 419 l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~-----r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~ 493 (621)
T TIGR01787 419 LELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH-----RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGF 493 (621)
T ss_pred HHHhcchhhhccccccCCCCchHHHHHHHHHHhcC-----ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHH
Confidence 99999999999988999999999999999988742 2234568999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
++.+|..+|....+.+.+++|++||+++|++||||++.+.++.+..|..
T Consensus 494 al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~ 542 (621)
T TIGR01787 494 VLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVG 542 (621)
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCC
Confidence 9999999987643458999999999999999999999988888777754
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=2e-36 Score=280.96 Aligned_cols=204 Identities=48% Similarity=0.923 Sum_probs=175.4
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
++|+.++|||+|++.++.+||+||||.+|+||+.+...++. +.+++.+++.++++||+++||+||||..|+..+...|
T Consensus 353 ~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~ 430 (634)
T cd02892 353 KYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHW 430 (634)
T ss_pred hCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCc--chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhh
Confidence 46778999999999999999999999999999998765421 3456789999999999999999999998887776665
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
+..+.|.+.|++.++|++++++|+.+|.+|..++...+.++ .+++++++||++||++.|++||+|++.|+.++.|+|++
T Consensus 431 ~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r-~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~ 509 (634)
T cd02892 431 LENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHR-REIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWF 509 (634)
T ss_pred HhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchH-HHHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHH
Confidence 66666777788788899999999999999999876544333 36788999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcc
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLH 207 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y 207 (212)
++.||..+|......+.++++++||+++|++||||+..+.++.+..|
T Consensus 510 al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~ 556 (634)
T cd02892 510 ALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSY 556 (634)
T ss_pred HHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCccc
Confidence 99999999986225789999999999999999999988776665544
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.96 E-value=3.4e-28 Score=210.70 Aligned_cols=193 Identities=47% Similarity=0.931 Sum_probs=154.8
Q ss_pred CCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhh
Q 028222 2 FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWI 81 (212)
Q Consensus 2 ~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~ 81 (212)
|.+.++|||+|+.....++++|+|+.++.+|..+.+.++. +.+..++.+.++++||+++|++||||..+.+.....+.
T Consensus 71 ~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~ 148 (348)
T cd02889 71 YRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYL 148 (348)
T ss_pred CCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcc--cchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHH
Confidence 5678999999998777789999999999999998764321 34567899999999999999999999977655444333
Q ss_pred hhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHH
Q 028222 82 ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWA 161 (212)
Q Consensus 82 ~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~a 161 (212)
+. ++ +.+++...+++++.+|+++|.+|..++...+.. ++++.+.++|+++||++.|++||+|.+.|+.++.|.|+++
T Consensus 149 ~~-~~-~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a 225 (348)
T cd02889 149 EL-IP-EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFA 225 (348)
T ss_pred hc-Cc-hhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHH
Confidence 22 11 113334456678889999999999887543322 2356689999999999999999999888877788999999
Q ss_pred HHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222 162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 200 (212)
Q Consensus 162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~ 200 (212)
+.+|..+|... ..+.++++++||+++|++||+|+..+.
T Consensus 226 ~~aL~~~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~ 263 (348)
T cd02889 226 LEALAAAGEDE-NSPYVRKACDWLLSKQNPDGGWGESYE 263 (348)
T ss_pred HHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCcCCccc
Confidence 99999998764 578999999999999999999987543
No 9
>PLN03012 Camelliol C synthase
Probab=99.96 E-value=2.2e-28 Score=227.10 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=134.6
Q ss_pred CCCCCCccc-ccc------------------CCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222 3 RHISKGGWT-FSD------------------KDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63 (212)
Q Consensus 3 ~~~~~Ggw~-~~~------------------~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q 63 (212)
-|++.|||. |+. .-..++.+|||+++|.+|..+.+.++.++..++ +..|++|++||++.|
T Consensus 525 mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i-~~~i~rAv~~L~~~Q 603 (759)
T PLN03012 525 LQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI-NAFIKKAAEYIENIQ 603 (759)
T ss_pred ccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh-HHHHHHHHHHHHHhc
Confidence 488999995 443 222467899999999999998876655433334 789999999999999
Q ss_pred cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
++||||..-.. ++ ....|+.||.+|..++..+++ .++|+||++||++.|++|
T Consensus 604 ~~DGsW~G~Wg--------------------v~--y~YgT~~aL~aL~a~g~~~~~------~~~Irrav~fLls~Q~~D 655 (759)
T PLN03012 604 MLDGSWYGNWG--------------------IC--FTYGTWFALAGLAAAGKTFND------CEAIRKGVHFLLAAQKDN 655 (759)
T ss_pred CCCCCCccccc--------------------cc--CCcHHHHHHHHHHHhCccCCC------cHHHHHHHHHHHHhcCCC
Confidence 99999973211 11 123699999999998764432 368999999999999999
Q ss_pred CCcCCCCcc-------------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 144 GSWYGTWGV-------------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 144 G~w~g~~~~-------------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
|||++.|.. +..+.|++|++||.++|...++.+.|+||++||++.|.+||+|.+..
T Consensus 656 GGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~ 724 (759)
T PLN03012 656 GGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQE 724 (759)
T ss_pred CCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCce
Confidence 999887743 44589999999999999876556799999999999999999998754
No 10
>PLN02993 lupeol synthase
Probab=99.94 E-value=1.3e-26 Score=215.64 Aligned_cols=168 Identities=19% Similarity=0.285 Sum_probs=131.7
Q ss_pred CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222 3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q 63 (212)
-|++.|||. |+... ..+|.+|||++||.+|..+.+..+.++..++ +++++++++||++.|
T Consensus 525 mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~Q 603 (763)
T PLN02993 525 LQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESKQ 603 (763)
T ss_pred hccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHhc
Confidence 388999999 76421 1147899999999999998765444333333 689999999999999
Q ss_pred cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
++||||..-.+ ...+..|+.||.+|..++..++. .++|+||++||++.|++|
T Consensus 604 ~~DGSW~G~Wg----------------------v~y~YgT~~aL~aL~a~G~~~~~------~~~IrrAv~fLls~Q~~D 655 (763)
T PLN02993 604 TPDGSWYGNWG----------------------ICFIYATWFALGGLAAAGKTYND------CLAMRKGVHFLLTIQRDD 655 (763)
T ss_pred CCCCCcccccc----------------------cccCcHHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHhcCCC
Confidence 99999963211 11233699999999888654321 368999999999999999
Q ss_pred CCcCCCCcc-------------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 144 GSWYGTWGV-------------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 144 G~w~g~~~~-------------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
|+|++.+.. +..++|++|++||.++|...++.+.++||++||++.|++||+|.+..
T Consensus 656 GGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~ 724 (763)
T PLN02993 656 GGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQE 724 (763)
T ss_pred CCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Confidence 999876532 44589999999999999865556899999999999999999998753
No 11
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.93 E-value=8.3e-26 Score=209.37 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=128.8
Q ss_pred CCCCCCccc-cccC------------------CCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222 3 RHISKGGWT-FSDK------------------DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~------------------~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q 63 (212)
.|+++|||+ |... ....+.+|+|+++|.+|..+....+.... ...+++++++++||++.|
T Consensus 412 ~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~-~~i~~ai~rav~~L~~~Q 490 (634)
T TIGR03463 412 RQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPD-GRITRAISRGVRFLRSRQ 490 (634)
T ss_pred hcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhh-hHHHHHHHHHHHHHHHhc
Confidence 488999999 6532 22467899999999999998654332111 223678999999999999
Q ss_pred cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
++||||....+. .....|+.+|.+|..++.... .+.++||++||++.|++|
T Consensus 491 ~~dGsW~g~Wg~----------------------~~~Y~T~~al~aL~~~G~~~~-------~~~i~rA~~~Ll~~Q~~D 541 (634)
T TIGR03463 491 REDGSFPGSWGV----------------------CFTYGTFHGVMGLRAAGASPD-------DMALQRAAAWLRSYQRAD 541 (634)
T ss_pred CCCCCccccCCC----------------------CCcHHHHHHHHHHHHcCCCcC-------cHHHHHHHHHHHHccCCC
Confidence 999999743221 112259999999988753211 368999999999999999
Q ss_pred CCcCCCCcc-----------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 144 GSWYGTWGV-----------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 144 G~w~g~~~~-----------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
|||++.|+. +..+.|++|++||..+|.. ..+.++|+++||+++|++||+|....
T Consensus 542 GgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~--~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 542 GGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEG--GHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred CCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCc--CCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 999776542 4568999999999999865 47899999999999999999999765
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.93 E-value=1.2e-25 Score=208.30 Aligned_cols=167 Identities=23% Similarity=0.418 Sum_probs=128.3
Q ss_pred CCCCCCccc-cccCCC----------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccC
Q 028222 3 RHISKGGWT-FSDKDH----------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK 65 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~~----------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~ 65 (212)
+|++.|||+ |+..+. ..|++|+|+++|++|...+. ...+.+++++++||+++|++
T Consensus 415 ~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~ 486 (635)
T TIGR01507 415 MQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGY--------DDAWPVIERAVEYLKREQEP 486 (635)
T ss_pred hcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCC
Confidence 589999996 653221 24789999999999998743 12378999999999999999
Q ss_pred CCce-eecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCC
Q 028222 66 TGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDG 144 (212)
Q Consensus 66 dGgw-~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG 144 (212)
|||| +.+.. .+...|+.||.+|...+... ..++|+||++||++.|++||
T Consensus 487 dG~W~g~wg~-----------------------~~~Y~T~~al~aL~~~g~~~-------~~~~i~rAv~wL~~~Q~~DG 536 (635)
T TIGR01507 487 DGSWFGRWGV-----------------------NYLYGTGAVLSALKAVGIDT-------REPYIQKALAWLESHQNPDG 536 (635)
T ss_pred CCCCccCCCC-----------------------ccccHHHHHHHHHHHcCCCc-------ccHHHHHHHHHHHHhcCCCC
Confidence 9999 32211 12336999999998764321 14789999999999999999
Q ss_pred CcCCC-----------CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCC---CCcccc
Q 028222 145 SWYGT-----------WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCP---NKLHMN 209 (212)
Q Consensus 145 ~w~g~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~---~~~y~~ 209 (212)
||+.. .+.++.+.|++|+.||..++.. ..+.|+||++||+++|++||+|++...+.. ..+|+.
T Consensus 537 GWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~ 613 (635)
T TIGR01507 537 GWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLG 613 (635)
T ss_pred CCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeec
Confidence 99632 1345677899999999999875 468999999999999999999998754433 445543
No 13
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.92 E-value=5.8e-25 Score=195.84 Aligned_cols=190 Identities=29% Similarity=0.584 Sum_probs=167.8
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|+.++|||+|+..++.+||+|+|+.++++|....+ ....+++++|+..+||..|||..++..+...|+.
T Consensus 245 ~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~-----------~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~ 313 (517)
T COG1657 245 RKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQS-----------LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLR 313 (517)
T ss_pred cccCCCccceeecccCCCCchhhhHHHHHHHhhcc-----------hhhHHhhhhHhhhcccccCceeeeccccccHHHh
Confidence 78899999999999999999999999999998754 2446679999999999999999999888899999
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHH
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAI 162 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al 162 (212)
.+++.+.+ .+++++.+++|+.++.+|+.+..-.+..+ ...++++++||++.|.++|+|++.|++|++|+|+.++
T Consensus 314 ~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl~~~~----~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~ 387 (517)
T COG1657 314 LLPPAEVK--AMVDPSTADCTHRVVLALAALNAYLEAYD----GQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGAL 387 (517)
T ss_pred hCCHhhcc--ccccCCcccCCCccHHHHhhhhhcccccc----CCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhh
Confidence 99987654 67899999999999999988764322211 3469999999999999999999999999999999999
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
.+|...|....+...+++++.||.++|.+||||+....+++...|+-
T Consensus 388 ~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 388 SALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG 434 (517)
T ss_pred hhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccccccc
Confidence 99999998765678999999999999999999999999998888763
No 14
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.90 E-value=3.6e-23 Score=191.58 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=125.4
Q ss_pred CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222 3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q 63 (212)
.|++.|||+ |+... ...|.+|+|+++|++|..+... .+..++.++++++||+++|
T Consensus 400 ~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r------~~~~~~~i~rAl~~L~~~Q 473 (621)
T TIGR01787 400 MQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR------ADEIRNVLERALEYLRREQ 473 (621)
T ss_pred HcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc------cHhHHHHHHHHHHHHHHhc
Confidence 389999998 65321 1346789999999999887421 1124588999999999999
Q ss_pred cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
++||+|..-.+. .+...|+.++.+|..++..... .+.++||++||++.|++|
T Consensus 474 ~~DGsw~g~wg~----------------------~y~YgT~~al~aL~~~G~~~~~------~~~i~rA~~~L~~~Q~~D 525 (621)
T TIGR01787 474 RADGSWFGRWGV----------------------NYTYGTGFVLSALAAAGRTYRN------CPEVQKACDWLLSRQMPD 525 (621)
T ss_pred CCCCCCcccCCC----------------------CCchhHHHHHHHHHHhCCcccC------CHHHHHHHHHHHhhcCCC
Confidence 999999632110 1223488999999988643211 268999999999999999
Q ss_pred CCcCCCCc-----------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcC
Q 028222 144 GSWYGTWG-----------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSC 202 (212)
Q Consensus 144 G~w~g~~~-----------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~ 202 (212)
|+|+..+. .+....|++||+||.+++... .+.++|+++||+++|++||+|...+.+.
T Consensus 526 GGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g 593 (621)
T TIGR01787 526 GGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITG 593 (621)
T ss_pred CCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccC
Confidence 99965431 345678999999999998753 5689999999999999999999866544
No 15
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.86 E-value=6.3e-21 Score=177.53 Aligned_cols=165 Identities=24% Similarity=0.377 Sum_probs=124.1
Q ss_pred CCCCCCccc-cccCCC------------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222 3 RHISKGGWT-FSDKDH------------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~~------------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q 63 (212)
.|++.|||. |+.... ..+.+|+|+++|.+|..+....+... ...++.++++++||++.|
T Consensus 412 ~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r--~~i~~~i~rAv~~L~~~Q 489 (634)
T cd02892 412 MQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHR--REIDPAIRRAVKYLLREQ 489 (634)
T ss_pred ccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchH--HHHHHHHHHHHHHHHHcc
Confidence 488999998 653221 14788999999999999865322111 023478999999999999
Q ss_pred cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
++||||..-... ..+..|+.++.+|..++.... ..+.++|+++||++.|++|
T Consensus 490 ~~DGsW~g~wg~----------------------~~~Y~T~~al~AL~~~G~~~~------~~~~i~~a~~~L~s~Q~~D 541 (634)
T cd02892 490 EPDGSWYGRWGV----------------------CYIYGTWFALEALAAAGEDYE------NSPYIRKACDFLLSKQNPD 541 (634)
T ss_pred CCCCCccccCCC----------------------ccHHHHHHHHHHHHHhCCccc------CcHHHHHHHHHHHhcCCCC
Confidence 999999531110 122358889999988754211 1368999999999999999
Q ss_pred CCcCCCC-----------ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 144 GSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 144 G~w~g~~-----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
|+|.... +.+....|++|+++|..+|.. +.+.++++++||+++|++||+|....
T Consensus 542 GgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~ 606 (634)
T cd02892 542 GGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEE 606 (634)
T ss_pred CCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 9996421 234567899999999999875 47899999999999999999998754
No 16
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.85 E-value=1.9e-21 Score=142.37 Aligned_cols=109 Identities=31% Similarity=0.413 Sum_probs=83.2
Q ss_pred HHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH--HH
Q 028222 56 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN--GV 133 (212)
Q Consensus 56 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r--a~ 133 (212)
|+||+++||+||||+.+ . .++++..|+.+|.+|..++...+ .++ ++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~---------------------~~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~ 48 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-G---------------------GPSDVWDTAFALLALAALGEEPD----------RDRAAAV 48 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-T---------------------S-BEHHHHHHHHHHHHHHTSHHC----------HHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-C---------------------CCCCHHHHHHHHHHHHHhCCccc----------HHHHHHH
Confidence 68999999999999953 1 13456679999999998865321 333 59
Q ss_pred HHHHhccccCCCcCCCC--ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222 134 KFTEDSQKLDGSWYGTW--GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 134 ~~L~~~Q~~dG~w~g~~--~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
+||++.|++||+|.... .....+.|.+++.+|..++... ..+.++++++||+++|++||||++
T Consensus 49 ~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~-~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 49 EWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD-DEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG-CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999999997654 2345788999999999988875 368999999999999999999984
No 17
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.84 E-value=2.6e-20 Score=161.41 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=122.6
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc--------------cCCCc
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ--------------SKTGG 68 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q--------------~~dGg 68 (212)
+|+++|||++.. +++.+|+.++.+|...... +...+.++|+++||+++| .++||
T Consensus 11 ~Q~~dG~W~~~~-----~~~~~Ta~~~~al~~~g~~-------~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 11 LQAPDGHWPGEY-----SQVWDTALALQALLEAGLA-------PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred hccCCCCccccC-----CchHHHHHHHHHHHHcCCC-------CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 689999999753 7788999999999876431 246789999999999999 78999
Q ss_pred eeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC
Q 028222 69 ITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG 148 (212)
Q Consensus 69 w~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g 148 (212)
|+ |..... ..++++.|+.++.+|..+....+. ......+.+.++++||++.|++||+|..
T Consensus 79 w~-y~~~~~------------------~~~~~~~Ta~~l~al~~~~~~~~~-~~~~~~~~i~~a~~~L~~~Q~~dG~f~~ 138 (348)
T cd02889 79 WA-FSTANQ------------------GYPDSDDTAEALKALLRLQKKPPD-GKKVSRERLYDAVDWLLSMQNSNGGFAA 138 (348)
T ss_pred Cc-ccCcCC------------------CCCCCCChHHHHHHHHHhhccCcc-cchhhHHHHHHHHHHHHHhccCCCCEee
Confidence 98 322100 123456799999999987654221 1233457899999999999999999953
Q ss_pred CCc--------------------cchhhHHHHHHHHHHHcCcCCCC-----hHHHHHHHHHHHhcccCCCcccc
Q 028222 149 TWG--------------------VCFIYSTWWAISGLVAAEKTYSN-----CLAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 149 ~~~--------------------~~~~~~T~~al~aL~~~g~~~~~-----~~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
... ......|++++.+|..++..... .+.++++++||++.|++||+|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~ 212 (348)
T cd02889 139 FEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYG 212 (348)
T ss_pred ecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 110 11245699999999998875422 16899999999999999999964
No 18
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.84 E-value=1.1e-19 Score=151.52 Aligned_cols=166 Identities=26% Similarity=0.352 Sum_probs=132.5
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
+|++.|||++..... .+++.+|+.++++|..+.+.. +...+.++++++||+++|++||||.........
T Consensus 64 ~q~~dG~~~~~~~~~-~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~---- 132 (300)
T cd00688 64 YQLSDGGFSGWGGND-YPSLWLTAYALKALLLAGDYI------AVDRIDLARALNWLLSLQNEDGGFREDGPGNHR---- 132 (300)
T ss_pred ccCCCCCccCCCCCC-CcchHhHHHHHHHHHHcCCcc------ccCHHHHHHHHHHHHHccCCCCCeeeecCCCCc----
Confidence 478999999865322 789999999999999976521 356788999999999999999999854332100
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHH
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAI 162 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al 162 (212)
...+.+++..|+.++.+|..++.... ...++++++||.+.|++||+| ..+.....+.|++++
T Consensus 133 ----------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~ 194 (300)
T cd00688 133 ----------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAA 194 (300)
T ss_pred ----------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHH
Confidence 01123466689999999998764311 357999999999999999999 777777889999999
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
.+|..++.. ..+.++++++||+++|..+|||+...
T Consensus 195 ~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~ 229 (300)
T cd00688 195 AALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGR 229 (300)
T ss_pred HHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCccc
Confidence 999999875 36789999999999999999998764
No 19
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.75 E-value=6.4e-17 Score=137.55 Aligned_cols=176 Identities=11% Similarity=-0.009 Sum_probs=109.6
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
.|+++|||++-......+++=.||.|+++|..+.+ +.++.+..|+++++||+++|++||||..+.......+.
T Consensus 61 ~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~- 133 (292)
T cd02897 61 YKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQ- 133 (292)
T ss_pred ccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhc-
Confidence 47899999953222124556689999999999753 23467899999999999999999999854321100000
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCC--------------------ccc------------hhHHHHHHH
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYP--------------------KHK------------KNEVNNFIT 130 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~--------------------~~~------------~~~i~~~i~ 130 (212)
+ .+++.+..|+.|+.+|...+.... .+. .+. ...+-
T Consensus 134 --------~---~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~~~~~y~~al~a~AL~~~~~~~-~~~~~ 201 (292)
T cd02897 134 --------G---GVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDSISDPYTLALAAYALTLAGSEK-RPEAL 201 (292)
T ss_pred --------C---CCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCCcc-HHHHH
Confidence 0 012334456666666655432100 000 000 11222
Q ss_pred HHHHHHHhccccCCCcCCC-----------Cc-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222 131 NGVKFTEDSQKLDGSWYGT-----------WG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 131 ra~~~L~~~Q~~dG~w~g~-----------~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
+.+.++...++.+|.|... ++ ...+..|+++|++|..++. + ..+.+.++++||.++|+.+|||+..
T Consensus 202 ~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~-~-~~~~~~~~v~WL~~~q~~~Ggf~sT 279 (292)
T cd02897 202 KKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGG-E-DLAEALPIVKWLAKQRNSLGGFSST 279 (292)
T ss_pred HHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCC-c-cHhHHHHHHHHHHHcCCCCCCcccH
Confidence 2334444445556777420 11 2245679999999999874 2 4578999999999999999999964
Q ss_pred c
Q 028222 199 Y 199 (212)
Q Consensus 199 ~ 199 (212)
-
T Consensus 280 Q 280 (292)
T cd02897 280 Q 280 (292)
T ss_pred H
Confidence 3
No 20
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.74 E-value=5.4e-17 Score=137.52 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=126.7
Q ss_pred CCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhc
Q 028222 5 ISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELL 84 (212)
Q Consensus 5 ~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l 84 (212)
.+.|||++. +...++...|..++.+|..++.. -......+++++||.++|++||||..-..
T Consensus 62 ~~~Ggf~~~--~~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~~~~---------- 122 (286)
T cd02890 62 NEDGGFGGG--PGQDPHLASTYAAVLSLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRGDLG---------- 122 (286)
T ss_pred CCCCCCCCC--CCCCccHHHHHHHHHHHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCcccCCC----------
Confidence 789999986 34577888999999999998541 01223467899999999999999974211
Q ss_pred CcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHHH
Q 028222 85 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAIS 163 (212)
Q Consensus 85 ~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al~ 163 (212)
..+++..|..+|.+|..++... ...+++.++||++.|++||+|...- +.++.-.|++|+.
T Consensus 123 -----------~~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~ 183 (286)
T cd02890 123 -----------GEVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVA 183 (286)
T ss_pred -----------CCchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHH
Confidence 1123445788888888876421 2468999999999999999996543 2345566899999
Q ss_pred HHHHcCcCCCChHHHHHHHHHHHhcccCCC-ccccccCcCCCCcccc
Q 028222 164 GLVAAEKTYSNCLAIRKATDFLLNIQCDDG-GWGESYLSCPNKLHMN 209 (212)
Q Consensus 164 aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG-gw~~~~~s~~~~~y~~ 209 (212)
+|..+|... .+.+++.++||+++|+.+| ||...+..-++..|++
T Consensus 184 sL~~l~~~~--~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~ 228 (286)
T cd02890 184 SLALLGRLD--LIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSF 228 (286)
T ss_pred HHHHcCCCc--ccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhh
Confidence 999998863 6689999999999999988 8988887777777765
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.72 E-value=1.3e-16 Score=132.99 Aligned_cols=163 Identities=19% Similarity=0.198 Sum_probs=123.2
Q ss_pred CCCCCCccccccCC-----CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCC
Q 028222 3 RHISKGGWTFSDKD-----HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGA 77 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~-----~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~ 77 (212)
+|+++|||.+.... ...++.+.|+.+|.+|..+.... ..+.++++++||.++|++||||. ..
T Consensus 116 ~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~--------~~~~~~~~~~~l~~~q~~~g~~~-~~---- 182 (300)
T cd00688 116 LQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD--------PDPLIEKALDYLLSCQNYDGGFG-PG---- 182 (300)
T ss_pred ccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC--------CcHHHHHHHHHHHHHhcCCCCcC-CC----
Confidence 47889999976543 23678999999999998875421 15789999999999999999992 11
Q ss_pred hhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC----ccc
Q 028222 78 PSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW----GVC 153 (212)
Q Consensus 78 ~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~----~~~ 153 (212)
..+++..|+.++.+|..++.. ....++++++||++.|.++|+|...+ ...
T Consensus 183 ------------------~~~~~~~t~~~~~aL~~~~~~--------~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~ 236 (300)
T cd00688 183 ------------------GESHGYGTACAAAALALLGDL--------DSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLS 236 (300)
T ss_pred ------------------ccccHHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHhcCCCCCcCccccCCCCcC
Confidence 112344688999999887532 13578999999999999999996543 123
Q ss_pred hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCC
Q 028222 154 FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNK 205 (212)
Q Consensus 154 ~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~ 205 (212)
....|.+++.+|...+.. ...+.++++++||++.|+++|+|...+.....+
T Consensus 237 ~~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~ 287 (300)
T cd00688 237 DSCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDT 287 (300)
T ss_pred chHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCCCCCCcc
Confidence 455677888888888764 235689999999999999999999866644433
No 22
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.72 E-value=8.4e-17 Score=136.38 Aligned_cols=149 Identities=19% Similarity=0.125 Sum_probs=115.0
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCCCceeecCCCCChhhhhhcCcccccchhhcccCccch
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVEC 102 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~ 102 (212)
.|=-+|.+|..+.. +.....++++++||+++| ++||||+.... +++++..
T Consensus 29 ~~y~~l~~l~ll~~--------~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~---------------------~~~~~~~ 79 (286)
T cd02890 29 LLYWILSSLDLLGE--------DLDDENKDEIIDFIYSCQVNEDGGFGGGPG---------------------QDPHLAS 79 (286)
T ss_pred HHHHHHHHHHHhCC--------CcchHHHHHHHHHHHHhhcCCCCCCCCCCC---------------------CCccHHH
Confidence 34456666666533 356788999999999999 99999984311 2346667
Q ss_pred HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHH
Q 028222 103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKA 181 (212)
Q Consensus 103 Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a 181 (212)
|+.++.+|..++.. ... ...++++++||++.|++||+|.+. ++..+.+.|.+++.+|..+|... .+.+++.
T Consensus 80 T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~ 151 (286)
T cd02890 80 TYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--DIDKEKL 151 (286)
T ss_pred HHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--hhhHHHH
Confidence 99999999988641 011 123678999999999999999654 45567788999999999998763 5789999
Q ss_pred HHHHHhcccCCCccccccCcCCCCcccc
Q 028222 182 TDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 182 ~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
++||+++|++||||+..+..-+...||+
T Consensus 152 ~~~l~~~Q~~dGGf~~~~~~es~~~~t~ 179 (286)
T cd02890 152 IDYILSCQNYDGGFGGVPGAESHGGYTF 179 (286)
T ss_pred HHHHHHhCCCCCCcCCCCCCCCCccHhH
Confidence 9999999999999998877666666664
No 23
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.71 E-value=2.2e-16 Score=132.49 Aligned_cols=159 Identities=9% Similarity=0.086 Sum_probs=114.2
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCc
Q 028222 20 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY 99 (212)
Q Consensus 20 ~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~ 99 (212)
.|.+.|...|.-|+.+-+. .+.+.+.+++.++++||+++|++||||+.|.+.+. .++..+| |++
T Consensus 41 iDN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~IT----fND------- 104 (290)
T TIGR02474 41 IDNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAIT----YND------- 104 (290)
T ss_pred ccCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Ccccccc----cCc-------
Confidence 4677888899888886543 24578899999999999999999999999987554 4455565 543
Q ss_pred cchHHHHHHHHHHHHhhCC------ccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchh------------------
Q 028222 100 VECTASALKAMTLFQKLYP------KHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI------------------ 155 (212)
Q Consensus 100 ~~~Ta~al~aL~~~~~~~~------~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~------------------ 155 (212)
+....||..|..+....+ ....+++..++.||++||++.|.++|+|.+.|+.++.
T Consensus 105 -~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls 183 (290)
T TIGR02474 105 -NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLS 183 (290)
T ss_pred -HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccc
Confidence 234567888866543211 1123678899999999999999999999999975431
Q ss_pred -hHHHHHHHHHHHcCcC-CCChHHHHHHHHHHHhcccCCCcc
Q 028222 156 -YSTWWAISGLVAAEKT-YSNCLAIRKATDFLLNIQCDDGGW 195 (212)
Q Consensus 156 -~~T~~al~aL~~~g~~-~~~~~~i~~a~~~Ll~~Q~~dGgw 195 (212)
..|+-++.-|...-.+ ++.-.+|+.|++||.+...++=-|
T Consensus 184 ~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 184 SSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCcee
Confidence 2345556666655422 224568999999999987665433
No 24
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.71 E-value=2.8e-16 Score=135.04 Aligned_cols=142 Identities=19% Similarity=0.294 Sum_probs=106.6
Q ss_pred HHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHH
Q 028222 28 SFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASAL 107 (212)
Q Consensus 28 ~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al 107 (212)
+|.+|..+... .....+++++||+++|++||||+.++.. .++...|..++
T Consensus 43 ~l~~L~lL~~~---------~~~~~~~~i~~l~~cq~~~GGF~~~~~~---------------------~~h~~~Ty~al 92 (316)
T PLN03201 43 GLTALDLLGKL---------DDVDRDEVVSWVMRCQHESGGFGGNTGH---------------------DPHILYTLSAV 92 (316)
T ss_pred HHHHHHHhCCC---------ccccHHHHHHHHHHhcCCCCCcCCCCCC---------------------cccHHHHHHHH
Confidence 66666666431 1233589999999999999999864321 13455699999
Q ss_pred HHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHH
Q 028222 108 KAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLL 186 (212)
Q Consensus 108 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll 186 (212)
.+|..++.. ..+ ..++.++||++.|++||||.+ .++..++..|.+|+.+|..++.. ....++++++||+
T Consensus 93 ~~L~ll~~~------~~i--d~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~ 162 (316)
T PLN03201 93 QILALFDRL------DLL--DADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIV 162 (316)
T ss_pred HHHHHhhhh------hhh--hHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHH
Confidence 999887432 112 356799999999999999976 56666777788888888887754 2457899999999
Q ss_pred hcccCCCccccccCcCCCCcccc
Q 028222 187 NIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 187 ~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
+||+.||||+..+..-+...||+
T Consensus 163 scq~~dGGF~~~p~~esh~g~T~ 185 (316)
T PLN03201 163 SCKNFDGGFGCTPGGESHAGQIF 185 (316)
T ss_pred HhcCCCCCcCCCCCCCCccceeh
Confidence 99999999999887766666654
No 25
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.70 E-value=3e-16 Score=133.26 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=121.4
Q ss_pred CCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhc
Q 028222 5 ISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELL 84 (212)
Q Consensus 5 ~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l 84 (212)
.+.|||+-.. ...|..-.|-.++.+|..+... +..++..+++++||+++|++||||+....
T Consensus 64 ~~~GgF~~~~--~~~~~~~~t~~a~~~L~ll~~~-------~~i~~~~~~~~~~i~~~q~~dGgf~~~~~---------- 124 (287)
T cd02894 64 NEDGGFGGSP--GHDPHILSTLSAIQILALYDLL-------NKIDENKEKIAKFIKGLQNEDGSFSGDKW---------- 124 (287)
T ss_pred CCCCCCCCCC--CCcchHHHHHHHHHHHHHhhhh-------hhccHHHHHHHHHHHHHcCCCCCeecCCC----------
Confidence 5689988643 2235555566777777665321 12344689999999999999999984211
Q ss_pred CcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHHH
Q 028222 85 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAIS 163 (212)
Q Consensus 85 ~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al~ 163 (212)
..+++..|..++.+|..++... ...++++++||++.|++||||.++- +..+.-.|.+|+.
T Consensus 125 -----------~e~d~~~ty~a~~~l~ll~~~~--------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cava 185 (287)
T cd02894 125 -----------GEVDTRFSYCAVLCLTLLGKLD--------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVG 185 (287)
T ss_pred -----------CCchHHHHHHHHHHHHHhCCcc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHH
Confidence 1133445888888887774321 1246999999999999999997643 3355667899999
Q ss_pred HHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccccc
Q 028222 164 GLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR 210 (212)
Q Consensus 164 aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~ 210 (212)
+|..+|... ...+++.++||+++|+.+|||...+..-++..|++.
T Consensus 186 sL~llg~~~--~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~ 230 (287)
T cd02894 186 ALAILGSLD--LIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWW 230 (287)
T ss_pred HHHHcCccc--ccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhH
Confidence 999998763 446899999999999999999988888888888753
No 26
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.68 E-value=2e-17 Score=120.55 Aligned_cols=108 Identities=23% Similarity=0.259 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
|+++++||++.|++||||. +... +++..|+.++.+|..++.. .+.++|+|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~-~~~~----------------------~~~~~t~~~~~al~~~~~~-------~~~~ai~k 50 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWG-YNWG----------------------SDVFVTAALILALAAAGDA-------AVDEAIKK 50 (109)
T ss_dssp ---------------------------------------------------------------TS--------SSBSSHH
T ss_pred Ccccccccccccccccccc-cccc----------------------ccccccccccccccccCCC-------CcHHHHHH
Confidence 5789999999999999997 2110 1234688888888877531 23578999
Q ss_pred HHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 132 GVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 132 a~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
+++||+++|++||+|... +..+.+.|+.++.+|...+..+ ..+.++|+++||+++|.+
T Consensus 51 a~~~l~~~Q~~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 51 AIDWLLSHQNPDGGWGYS-GGEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQLD 108 (109)
T ss_dssp HHHHHHH---TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCCCCCCCCc-CCCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCC
Confidence 999999999999999644 4344566777777776666654 688999999999999753
No 27
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.68 E-value=5.2e-17 Score=118.70 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=75.3
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHH--HHHHHhcccCCCceeecCCCCChhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA--ANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~a--v~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
+|++.|||++. ...|++.+|+.+|.+|..+...+ ..+++ ++||+++|++||||...+..
T Consensus 7 ~Q~~dGgw~~~---~~~~~~~~T~~al~aL~~~g~~~-----------~~~~~~~~~~L~~~q~~dGg~~~~~~~----- 67 (113)
T PF13249_consen 7 RQNPDGGWGGF---GGPSDVWDTAFALLALAALGEEP-----------DRDRAAAVEWLLSQQNPDGGWGSNPDG----- 67 (113)
T ss_dssp HB-TTSSBBSS---TS-BEHHHHHHHHHHHHHHTSHH-----------CHHHHHHHHHHHHHB-TTSGBBSSTTT-----
T ss_pred HcCCCCCCcCC---CCCCCHHHHHHHHHHHHHhCCcc-----------cHHHHHHHHHHHHhCCCCCCccCCCCC-----
Confidence 58999999985 45788999999999999985421 14455 99999999999999954311
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCc
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSW 146 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w 146 (212)
.++++..|+.++.+|..++.... .+.++|+++||++.|++||+|
T Consensus 68 ---------------~~~~~~~t~~~l~~l~~~~~~~~-------~~~~~~a~~~l~~~Q~~dGg~ 111 (113)
T PF13249_consen 68 ---------------GPPDVYTTYVALAALELLGRPDD-------EEAVRKAVDWLLSCQNPDGGW 111 (113)
T ss_dssp ---------------T-BSHHHHHHHHHHHHHHT-GGC-------HTTHCCHHHHHHHTB-TTSSB
T ss_pred ---------------CCccHHHHHHHHHHHHHcCCCcc-------cHHHHHHHHHHHHhcCCCCCC
Confidence 12345568888888877654211 357999999999999999999
No 28
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.67 E-value=2.3e-15 Score=128.45 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=118.1
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|+++|||++-.. + .+++=.||.|+++|..+.+. + .++++.+.++++||+++|++||+|....+-.+..+
T Consensus 65 q~~dGsf~~w~~-~-~~s~wlTA~v~~~l~~a~~~-----~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m--- 133 (297)
T cd02896 65 RKPDGSYAAWKN-R-PSSTWLTAFVVKVFSLARKY-----I-PVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM--- 133 (297)
T ss_pred cCCCCCccCCCC-C-CcchhhHHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc---
Confidence 668999994322 2 33444799999999998652 1 46788999999999999999999985322111110
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAIS 163 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~ 163 (212)
.+....+++.+..||.|+.+|...+...+.. ..++..+|+||++||.+.|.+- ...|+++++..
T Consensus 134 ------~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~-~~~~~~~i~rA~~yL~~~~~~~---------~~~Y~~Al~ay 197 (297)
T cd02896 134 ------TGGVEGSEGDVSLTAFVLIALQEARSICPPE-VQNLDQSIRKAISYLENQLPNL---------QRPYALAITAY 197 (297)
T ss_pred ------cCCccccCCCccchHHHHHHHHhhhcccccc-chhhHHHHHHHHHHHHHhcccC---------CChHHHHHHHH
Confidence 1111112356778999999999886432211 1234578999999999988751 34788999889
Q ss_pred HHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222 164 GLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 200 (212)
Q Consensus 164 aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~ 200 (212)
||..+|.+ ...++.++|++.|+.||+|+....
T Consensus 198 ALal~~~~-----~~~~a~~~L~~~~~~d~~~~~~~~ 229 (297)
T cd02896 198 ALALADSP-----LSHAANRKLLSLAKRDGNGWYWWT 229 (297)
T ss_pred HHHHcCCh-----hhHHHHHHHHHHhhhCCCcceecc
Confidence 99888754 678899999999999999986543
No 29
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.65 E-value=3.5e-16 Score=141.93 Aligned_cols=151 Identities=20% Similarity=0.281 Sum_probs=120.5
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD 98 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~ 98 (212)
++.++||..++.+|....+..|+++..++ ...|++|+.||.+.|.+||+|.+-.+ . +.++
T Consensus 559 ~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei-~~~i~~av~~ie~~Q~~DGSWyGsWg-------v----CFtY-------- 618 (760)
T KOG0497|consen 559 YEYVECTSSAIQALVYFHKLFPGHRKKEI-EKSIEKAVEFIEKLQLPDGSWYGSWG-------V----CFTY-------- 618 (760)
T ss_pred ecccccHHHHHHHHHhhcccCccHHHHHH-HHHHHHHHHHHHHcCCCCCcccchhh-------H----HHHH--------
Confidence 46799999999999998887665544433 68899999999999999999974211 1 1112
Q ss_pred ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-------------cchhhHHHHHHHHH
Q 028222 99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-------------VCFIYSTWWAISGL 165 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-------------~~~~~~T~~al~aL 165 (212)
.|-.++.+|+..+..+.+ ..+++||++||++.|++||+|+...- .+.+.+|++|+++|
T Consensus 619 ---~t~Fa~~gl~aaGkty~n------c~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~L 689 (760)
T KOG0497|consen 619 ---GTWFALRGLAAAGKTYEN------CEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMAL 689 (760)
T ss_pred ---HHHHhcchhhhcchhhhc------cHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHH
Confidence 377788888888765433 47899999999999999999964431 23467899999999
Q ss_pred HHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222 166 VAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 166 ~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
..+|...++.-.+.||++.|++.|.++|.|+..
T Consensus 690 i~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq 722 (760)
T KOG0497|consen 690 IMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ 722 (760)
T ss_pred HhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence 999998766668999999999999999999864
No 30
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.65 E-value=1.8e-15 Score=128.50 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=117.7
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|++.|||+.+. ..-+|.--|=.++.+|..+... ....++++++||+++|++||||+.-+..
T Consensus 113 q~~dGgf~~~~--~~e~d~~~ty~a~~~l~ll~~~---------~~i~~~~~~~~l~~~q~~dGGF~~~~~~-------- 173 (287)
T cd02894 113 QNEDGSFSGDK--WGEVDTRFSYCAVLCLTLLGKL---------DLIDVDKAVDYLLSCYNFDGGFGCRPGA-------- 173 (287)
T ss_pred cCCCCCeecCC--CCCchHHHHHHHHHHHHHhCCc---------chhhHHHHHHHHHHcCCCCCCcCCCCCC--------
Confidence 78899999863 2223332366666666665321 1234799999999999999999842211
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al 162 (212)
.+++-.|+.++.+|..++.... ..+++.++||+++|.++|+|.++-+ .....-|.+++
T Consensus 174 -------------es~~~~t~cavasL~llg~~~~--------~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~ 232 (287)
T cd02894 174 -------------ESHAGQIFCCVGALAILGSLDL--------IDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 232 (287)
T ss_pred -------------CCchhHHHHHHHHHHHcCcccc--------cCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHH
Confidence 1344458889999998864321 2378899999999999999976543 23456678888
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCcccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~ 209 (212)
.+|..+|... ....++.++||+++|+ ++|||...+...++..|+.
T Consensus 233 a~l~~l~~~~--~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~ 278 (287)
T cd02894 233 SSLKIIGRLH--WINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTF 278 (287)
T ss_pred HHHHHhcccc--ccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHH
Confidence 8998887653 3447888999999995 7999998887777766654
No 31
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.7e-15 Score=119.29 Aligned_cols=122 Identities=24% Similarity=0.329 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
-++.|.|+++||+.+|||+.+++.. +++-.|-.|++.|+.+...+- --+.|
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Ghd---------------------~hll~TlsAvQiL~~ydsi~~--------~d~d~ 118 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGHD---------------------PHLLYTLSAVQILALYDSINV--------LDRDK 118 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCCC---------------------hHHHHHHHHHHHHHHHccccc--------ccHHH
Confidence 5788999999999999999765421 234458889999998865421 12466
Q ss_pred HHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCC
Q 028222 132 GVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPN 204 (212)
Q Consensus 132 a~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~ 204 (212)
.+.|+...|++||+|.| .||...+..+.+|+.+|.-+|.. +...+++|++|+++|-|-|||||-.|..-+-
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~pGaESH 190 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCRPGAESH 190 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCCCCcccc
Confidence 79999999999999965 68887778888899999999887 3678999999999999999999988765443
No 32
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.59 E-value=2.5e-14 Score=122.15 Aligned_cols=149 Identities=17% Similarity=0.085 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHH
Q 028222 25 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTA 104 (212)
Q Consensus 25 Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta 104 (212)
+--+|.+|..+.. +......++.++||+++|++||||+.... +++++..|.
T Consensus 30 ~y~~l~~l~lL~~--------~~~~~~~~~~i~~i~~~q~~~GgF~~~~~---------------------~~~h~~~Ty 80 (299)
T cd02893 30 LYWILHSLELLGE--------ELDQSYADDVISFLRRCQNPSGGFGGGPG---------------------QLPHLATTY 80 (299)
T ss_pred HHHHHHHHHHhCC--------cccHHHHHHHHHHHHHhcCCCCCCCCCCC---------------------CCccHHHHH
Confidence 3445666666643 23456689999999999999999984211 234566799
Q ss_pred HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHH
Q 028222 105 SALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATD 183 (212)
Q Consensus 105 ~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~ 183 (212)
.++.+|..++... .. .. ...++.++||++.|++||+|... .+..+...|.+|+..+..++.. ....++++++
T Consensus 81 ~A~~~L~ll~~~~-~~--~~--id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~--~~~~~~~~~~ 153 (299)
T cd02893 81 AAVNALAIIGTEE-AY--DV--IDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL--TDELFEGVAE 153 (299)
T ss_pred HHHHHHHHhCCch-hh--hH--hhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC--chhhHHHHHH
Confidence 9999998885310 00 11 12456899999999999999643 3344556677777777767765 3567899999
Q ss_pred HHHhcccCCCccccccCcCCCCcccc
Q 028222 184 FLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 184 ~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
||++||+.||||+..+..-+...||+
T Consensus 154 ~l~~cQ~~dGGF~~~p~~e~h~~yTf 179 (299)
T cd02893 154 YILSCQTYEGGFGGVPGNEAHGGYTF 179 (299)
T ss_pred HHHHcCCCCCCcCCCCCCCCCccHHH
Confidence 99999999999998877667677664
No 33
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.57 E-value=2.8e-14 Score=122.71 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=116.1
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|.+.|||+-.. ...+..-.|-.++.+|..+.+. ..-..+++++||.++|++||||..-..+
T Consensus 69 q~~~GGF~~~~--~~~~h~~~Ty~al~~L~ll~~~---------~~id~~~~~~~l~s~Q~~dGgF~~~~~g-------- 129 (316)
T PLN03201 69 QHESGGFGGNT--GHDPHILYTLSAVQILALFDRL---------DLLDADKVASYVAGLQNEDGSFSGDEWG-------- 129 (316)
T ss_pred cCCCCCcCCCC--CCcccHHHHHHHHHHHHHhhhh---------hhhhHHHHHHHHHHhcCCCCCccCCCCC--------
Confidence 67889998432 2345666677777777776321 1223578999999999999999842111
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al 162 (212)
..++..|..++.+|..++... ...++++++||++.|++||||.+.- +..+.-.|.+|+
T Consensus 130 -------------e~D~r~ty~a~a~l~LL~~~~--------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~cai 188 (316)
T PLN03201 130 -------------EIDTRFSYCALCCLSLLKRLD--------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCV 188 (316)
T ss_pred -------------CccHHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHH
Confidence 112223667777777664321 1247899999999999999997542 233444588999
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
.+|.-+|.... ...++.++||+++|..+|||...+..-++..|+.
T Consensus 189 aaL~llg~~~~--~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~ 233 (316)
T PLN03201 189 GALAITGSLHH--VDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSW 233 (316)
T ss_pred HHHHHcCcccc--CCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHH
Confidence 99998886531 2246678999999999999999998888888875
No 34
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.56 E-value=7e-14 Score=119.83 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=117.9
Q ss_pred CCCCccccccC-----CC---CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCC
Q 028222 5 ISKGGWTFSDK-----DH---GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAG 76 (212)
Q Consensus 5 ~~~Ggw~~~~~-----~~---~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~ 76 (212)
.+.|||+=+.. +. ..++.-.|=.++.+|..+... ......++.++||+++|++||||+.....
T Consensus 67 ~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~--------~~~idr~~i~~~l~~~q~~dGgF~~~~~~- 137 (307)
T cd02895 67 LPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDD--------LSRVDRKAILNFLSKLQLPDGSFGSVLDS- 137 (307)
T ss_pred CCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCc--------hhhhhHHHHHHHHHHhCCCCCCccCCcCC-
Confidence 77898874321 01 123333455555555555331 11223588999999999999999854200
Q ss_pred ChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-Cccchh
Q 028222 77 APSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFI 155 (212)
Q Consensus 77 ~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~ 155 (212)
....++...|..+|.+|..++...+ +. .-+++.++||++.|++||+|... .+..+.
T Consensus 138 -----------------~~~e~d~r~ty~Av~~l~lL~~~~~----~~--~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~ 194 (307)
T cd02895 138 -----------------EGGENDMRFCYCAVAICYMLDDWSE----ED--IDKEKLIDYIKSSQSYDGGFGQGPGLESHG 194 (307)
T ss_pred -----------------cCCCccHHHHHHHHHHHHHhCCCcc----cc--ccHHHHHHHHHHccCCCCCccCCCCCCccc
Confidence 0012344458888888887764321 00 13688999999999999999643 233444
Q ss_pred hHHHHHHHHHHHcCcCCC-ChHHHHHHHHHHHhcccCCCccccccCcCCCCccccc
Q 028222 156 YSTWWAISGLVAAEKTYS-NCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR 210 (212)
Q Consensus 156 ~~T~~al~aL~~~g~~~~-~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~ 210 (212)
-.|.+|+.+|..++.... ....+++.++||+++|+.+|||+..+..-++..|++-
T Consensus 195 g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw 250 (307)
T cd02895 195 GSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFW 250 (307)
T ss_pred cHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhH
Confidence 568899999998887520 1467899999999999999999999988888888763
No 35
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.56 E-value=3.8e-14 Score=125.68 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHH
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 126 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~ 126 (212)
..++..++.++||.++|++||||+..++ +.+++..|..+|.+|..++.. .... .+
T Consensus 89 l~~~~~~~ii~~l~~cQ~~dGGFgg~pg---------------------~~~hl~~TY~Av~~L~iLg~~-~~l~--~I- 143 (439)
T PLN02710 89 LDDELENDTIDFLSRCQDPNGGYGGGPG---------------------QLPHLATTYAAVNTLVTIGGE-RALS--SI- 143 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCCcCCCCCCC---------------------CCccHHHHHHHHHHHHHcCCc-hhhc--cc-
Confidence 4456678999999999999999985432 124556799999999988632 0111 01
Q ss_pred HHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCC
Q 028222 127 NFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNK 205 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~ 205 (212)
-.++.++||++.|++||+|.+. ++...+..|.+|+..|..++.. ....+++.++||++||+.||||+..+..-+..
T Consensus 144 -dr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~ 220 (439)
T PLN02710 144 -NREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKGVGDYILSCQTYEGGIGGEPGAEAHG 220 (439)
T ss_pred -CHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHHHHHHHHHhCCCCCCCCCCCCCCCch
Confidence 2467899999999999999643 3444456677777777777764 35678999999999999999999988777777
Q ss_pred cccc
Q 028222 206 LHMN 209 (212)
Q Consensus 206 ~y~~ 209 (212)
.|++
T Consensus 221 gyTf 224 (439)
T PLN02710 221 GYTF 224 (439)
T ss_pred HHHH
Confidence 6664
No 36
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.56 E-value=8e-14 Score=119.07 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=117.1
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|.+.||++-. ....++.--|=.++.+|..+...+ -...-..+++++||+++|++||||..-...
T Consensus 60 q~~~GgF~~~--~~~~~h~~~Ty~A~~~L~ll~~~~------~~~~id~~~~~~~l~~~q~~dGgf~~~~~~-------- 123 (299)
T cd02893 60 QNPSGGFGGG--PGQLPHLATTYAAVNALAIIGTEE------AYDVIDREALYKFLLSLKQPDGSFRMHVGG-------- 123 (299)
T ss_pred cCCCCCCCCC--CCCCccHHHHHHHHHHHHHhCCch------hhhHhhHHHHHHHHHHhcCCCCCeeCCCCC--------
Confidence 6788988874 233566656777777777764311 011233567999999999999999843211
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al 162 (212)
.++...|..++..+..++... ...+++.++||++.|+.||||.++-+ ..+.-.|.+++
T Consensus 124 -------------e~D~r~tycava~~~lL~~~~--------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcav 182 (299)
T cd02893 124 -------------EVDVRGTYCAISVASLLNILT--------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCAL 182 (299)
T ss_pred -------------CchHhHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHH
Confidence 123334666666666554321 13578999999999999999965432 23344588899
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhcccC-CCccccccCcCCCCcccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~-dGgw~~~~~s~~~~~y~~ 209 (212)
.+|..+|... ...+++.++||+++|.+ +|||...+..-++..|+.
T Consensus 183 asL~llg~~~--~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~ 228 (299)
T cd02893 183 AALAILGKPD--KLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSF 228 (299)
T ss_pred HHHHHcCCcc--ccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHH
Confidence 9999888753 34689999999999988 999999888888887765
No 37
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.54 E-value=8.2e-14 Score=119.40 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=118.6
Q ss_pred CCCCCccccccC-CCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 4 HISKGGWTFSDK-DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 4 ~~~~Ggw~~~~~-~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|.+.|||+-... ...-+|.--|=.++.+|..+....+ .....++.++||+++|+.||||+..+.
T Consensus 125 q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-------~~~d~~~li~~l~s~Q~~dGGF~~~~~-------- 189 (307)
T cd02895 125 QLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-------EDIDKEKLIDYIKSSQSYDGGFGQGPG-------- 189 (307)
T ss_pred CCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-------ccccHHHHHHHHHHccCCCCCccCCCC--------
Confidence 678899885431 1233454455555555555533210 112468999999999999999984321
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA 161 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a 161 (212)
..++...|..++.+|..++.... .. ...+++.++||+++|..+|||.++-+ .....-|.++
T Consensus 190 -------------~Esh~g~Tyca~asL~lL~~~~~-~~----~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~ 251 (307)
T cd02895 190 -------------LESHGGSTFCAIASLSLLGKLEE-LS----EKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWV 251 (307)
T ss_pred -------------CCccccHHHHHHHHHHHcCCccc-cc----cccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHH
Confidence 12344468889999988865320 00 12478899999999999999977643 2344567788
Q ss_pred HHHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCccccc
Q 028222 162 ISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMNR 210 (212)
Q Consensus 162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~~ 210 (212)
+.+|.-++.. ....+++..+||+++|+ .+|||...+...++..|++.
T Consensus 252 ~a~L~iL~~~--~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~ 299 (307)
T cd02895 252 GASLKLLDAF--QLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYL 299 (307)
T ss_pred HHHHHHcCcc--cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHH
Confidence 8888888764 24567889999999886 59999999998888877653
No 38
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.49 E-value=5.9e-13 Score=118.10 Aligned_cols=167 Identities=12% Similarity=0.121 Sum_probs=116.4
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|++.|||+=. ....++.--|=.++.+|..+.... . ...-..++.++||+++|++||||......
T Consensus 105 Q~~dGGFgg~--pg~~~hl~~TY~Av~~L~iLg~~~-~-----l~~Idr~~l~~fl~s~q~~dGgF~~~~~g-------- 168 (439)
T PLN02710 105 QDPNGGYGGG--PGQLPHLATTYAAVNTLVTIGGER-A-----LSSINREKLYTFLLRMKDPSGGFRMHDGG-------- 168 (439)
T ss_pred cCCCcCCCCC--CCCCccHHHHHHHHHHHHHcCCch-h-----hcccCHHHHHHHHHHcCCCCCCcccCCCC--------
Confidence 6678988742 223455555666777777664311 0 11112578899999999999999853221
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al 162 (212)
..++..|..|+..|..++...+ .-+++.++||++.|+.||||.++- ...+.-.|.+++
T Consensus 169 -------------E~D~R~tYcAlail~LL~~l~~--------~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcav 227 (439)
T PLN02710 169 -------------EMDVRACYTAISVASLLNILDD--------ELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGL 227 (439)
T ss_pred -------------CCCcCCcHHHHHHHHHhCcCch--------hhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHH
Confidence 1234457777776666643211 246889999999999999997653 233445588899
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
.+|.-+|... ...+++.++||+++|+.+|||...+.--.+.+|..
T Consensus 228 AsL~LLg~l~--~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSf 272 (439)
T PLN02710 228 AAMILINEVD--RLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSF 272 (439)
T ss_pred HHHHHcCCcc--ccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhH
Confidence 9998888653 34578899999999999999999998888887754
No 39
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.47 E-value=5.2e-13 Score=113.57 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
|+.++..|+++|++||||+.|.... +++++-.|+.|+.+|.......+. + +.+++|
T Consensus 51 l~~g~~~~~~~q~~dGsf~~w~~~~-------------------~~~~~wlTa~v~~~L~~a~~~~~v-~----~~~i~r 106 (292)
T cd02897 51 LRTGYQRQLTYKHSDGSYSAFGESD-------------------KSGSTWLTAFVLKSFAQARPFIYI-D----ENVLQQ 106 (292)
T ss_pred HHHHHHHHHhccCCCCCeecccCCC-------------------CCcchhhHHHHHHHHHHHhccCCC-C----HHHHHH
Confidence 6666666677999999998663210 123444699999999987632221 1 468999
Q ss_pred HHHHHHhccccCCCcCCCC---------c-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222 132 GVKFTEDSQKLDGSWYGTW---------G-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 190 (212)
Q Consensus 132 a~~~L~~~Q~~dG~w~g~~---------~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~ 190 (212)
+++||+++|++||+|.... + ......|++++.+|...|... ..+.++++++||.+.+.
T Consensus 107 a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~-~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 107 ALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS-ERPVVEKALSCLEAALD 174 (292)
T ss_pred HHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhcc
Confidence 9999999999999996311 0 122457999999999988754 56777888888877654
No 40
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.42 E-value=2.7e-14 Score=103.88 Aligned_cols=69 Identities=39% Similarity=0.533 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 129 ITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 129 i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
|+++++||++.|++||+|...++ ...+.|.+++.+|..++... ..+.|+|+++||+++|++||||+...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-~~~~~t~~~~~al~~~~~~~-~~~ai~ka~~~l~~~Q~~dG~w~~~~ 69 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-SDVFVTAALILALAAAGDAA-VDEAIKKAIDWLLSHQNPDGGWGYSG 69 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-TS
T ss_pred Ccccccccccccccccccccccc-ccccccccccccccccCCCC-cHHHHHHHHHHHHHhcCCCCCCCCcC
Confidence 57899999999999999987776 34678889999999988653 68899999999999999999999763
No 41
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.40 E-value=7e-12 Score=104.33 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=111.6
Q ss_pred CCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhh
Q 028222 2 FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWI 81 (212)
Q Consensus 2 ~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~ 81 (212)
|| +++|+|..-. ...-+++=.||.|++.|..+.+. ..++++.|.++++||+++|++||.|....+-.+..+.
T Consensus 9 y~-~~DGsfs~f~-~~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~ 80 (246)
T PF07678_consen 9 YR-RSDGSFSAFS-SDSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQ 80 (246)
T ss_dssp TB--TTSSBBSST-TTSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGS
T ss_pred CC-CCCCCeeccc-cCCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccC
Confidence 44 6799999322 33345555899999999998653 3578899999999999999999999743221111110
Q ss_pred hhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcC--------------
Q 028222 82 ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWY-------------- 147 (212)
Q Consensus 82 ~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~-------------- 147 (212)
.. -...+..||.|+.+|...+...+. ....+..+++||++||.+....--.-+
T Consensus 81 g~------------~~~~~~lTA~VliAL~e~~~~~~~-~~~~~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~ 147 (246)
T PF07678_consen 81 GG------------VEDDIALTAYVLIALLEAGSLCDS-EKPEYENAINKALNYLERHLDNIQDPYTLALVAYALALAGD 147 (246)
T ss_dssp GG------------GTHHHHHHHHHHHHHHHCHCCHTT-THHCHHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTT
T ss_pred CC------------CCCCeeehHHHHHHHHhhhhhccc-cchhhHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhhcc
Confidence 00 022455799999999987622111 123456778888888876522111100
Q ss_pred ---------------------CCCc----------------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222 148 ---------------------GTWG----------------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 190 (212)
Q Consensus 148 ---------------------g~~~----------------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~ 190 (212)
-.|. ...+..|++||+++...+ +.+.+.+.++||.++|+
T Consensus 148 ~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~ 223 (246)
T PF07678_consen 148 SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRN 223 (246)
T ss_dssp CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcC
Confidence 0011 112467899999998882 35688999999999999
Q ss_pred CCCccccc
Q 028222 191 DDGGWGES 198 (212)
Q Consensus 191 ~dGgw~~~ 198 (212)
..|||+..
T Consensus 224 ~~Ggf~ST 231 (246)
T PF07678_consen 224 SGGGFGST 231 (246)
T ss_dssp TTSSTSSH
T ss_pred CCCccCcH
Confidence 99999864
No 42
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.40 E-value=3.6e-12 Score=108.81 Aligned_cols=117 Identities=23% Similarity=0.224 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHH
Q 028222 49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 128 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~ 128 (212)
.+.|++++..|+++|++||||+.|.... +++-.|+.|+.+|.......+ -. +..
T Consensus 51 ~~~i~~g~~r~l~~q~~dGsf~~w~~~~---------------------~s~wlTA~v~~~l~~a~~~~~-v~----~~~ 104 (297)
T cd02896 51 LKYIRQGYQRQLSYRKPDGSYAAWKNRP---------------------SSTWLTAFVVKVFSLARKYIP-VD----QNV 104 (297)
T ss_pred HHHHHHHHHHHHhccCCCCCccCCCCCC---------------------cchhhHHHHHHHHHHHHHcCC-CC----HHH
Confidence 4669999999999999999998764321 223359999999998865321 11 468
Q ss_pred HHHHHHHHHhccccCCCcCCCC--------c-----cchhhHHHHHHHHHHHcCcCC-----CChHHHHHHHHHHHhccc
Q 028222 129 ITNGVKFTEDSQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTY-----SNCLAIRKATDFLLNIQC 190 (212)
Q Consensus 129 i~ra~~~L~~~Q~~dG~w~g~~--------~-----~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~Ll~~Q~ 190 (212)
+.|+++||+++|++||+|.... + .....-|++++.+|...+... ...+.++||++||.++|.
T Consensus 105 l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~ 184 (297)
T cd02896 105 ICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLP 184 (297)
T ss_pred HHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcc
Confidence 9999999999999999996432 1 023456999999999987642 135689999999999886
Q ss_pred C
Q 028222 191 D 191 (212)
Q Consensus 191 ~ 191 (212)
+
T Consensus 185 ~ 185 (297)
T cd02896 185 N 185 (297)
T ss_pred c
Confidence 4
No 43
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.37 E-value=8.9e-12 Score=104.89 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHH
Q 028222 48 EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNN 127 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~ 127 (212)
..+.|++++.+|+++|++||||+.|.... .+++-.|+.|+.+|......... -.+
T Consensus 47 ~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~--------------------~~~~~~Ta~~~~~L~~a~~~~~v-----~~~ 101 (282)
T cd02891 47 ALEYIRKGYQRLLTYQRSDGSFSAWGNSD--------------------SGSTWLTAYVVKFLSQARKYIDV-----DEN 101 (282)
T ss_pred HHHHHHHHHHHHHhhcCCCCCccccCCCC--------------------CCchHHHHHHHHHHHHHHHcCCC-----CHH
Confidence 46789999999999999999999664321 23344699999999987653211 136
Q ss_pred HHHHHHHHHHhccccCCCcCCCCcc----------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222 128 FITNGVKFTEDSQKLDGSWYGTWGV----------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 190 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~dG~w~g~~~~----------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~ 190 (212)
.++|+++||++.|++||+|...+.. .....|++++.+|...|... .+.+.++++||.+...
T Consensus 102 ~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 102 VLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLD 172 (282)
T ss_pred HHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcc
Confidence 8999999999999999999654332 22357999999999998753 6788999999998764
No 44
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.4e-11 Score=101.87 Aligned_cols=155 Identities=21% Similarity=0.314 Sum_probs=105.0
Q ss_pred CCCCCccccccCCCCCCCCccH--HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCS--SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWI 81 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~T--a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~ 81 (212)
|.|.|++.-... +-.|++.- |..+.+|+. . .+.+-.+.+|+||++|||=||||+.-+.
T Consensus 139 k~pdGsF~~~~~--gevDtr~~Y~al~ilsllg--~---------~~~~~~e~~vdyl~kCqnyeGGFg~~p~------- 198 (342)
T COG5029 139 KNPDGSFRSDLE--GEVDTRFLYIALSILSLLG--D---------LDKELFEGAVDYLKKCQNYEGGFGLCPY------- 198 (342)
T ss_pred cCCCCceecccC--CcchHHHHHHHHHHHHHHh--h---------cchhhhHHHHHHHHHhhccCCcccCCCc-------
Confidence 678888875331 33344432 333333322 2 3456678999999999999999995322
Q ss_pred hhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc----cchhhH
Q 028222 82 ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG----VCFIYS 157 (212)
Q Consensus 82 ~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~----~~~~~~ 157 (212)
.|+ |...|..|+.+|+.++.+.+- ..+++-+.||.++|.+.||+.|+-. .|+
T Consensus 199 -----aEa---------Hag~tFcalaalalL~~Ld~l-------s~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY--- 254 (342)
T COG5029 199 -----AEA---------HAGYTFCALAALALLGKLDKL-------SDVEKLIRWLAERQLSSGGLNGRSNKLVDTCY--- 254 (342)
T ss_pred -----hhh---------ccchHHHHHHHHHHHhccccc-------chHHHHHHHHHHcccccCCcCCCcccCccchh---
Confidence 232 334688899999998876442 2378899999999999999987632 222
Q ss_pred HHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC-CCccccccCcCCC
Q 028222 158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYLSCPN 204 (212)
Q Consensus 158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~-dGgw~~~~~s~~~ 204 (212)
..|++..|.-++... .-.-++-.+||+.||++ .|||.+.+...++
T Consensus 255 s~WvlsSl~il~~~~--~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D 300 (342)
T COG5029 255 SFWVLSSLAILGKLD--FINTEELTDYILDCQQETSGGFSDRPGEEPD 300 (342)
T ss_pred hhhhcchHHhcchhh--hcCHHHHHHHHHhhcccCCCCCCCCCcccch
Confidence 446666666666432 33456677999999987 9999988765544
No 45
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=7.9e-11 Score=99.85 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=95.6
Q ss_pred CCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHH
Q 028222 46 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 125 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i 125 (212)
.++++..+++|++|..+|.|.|||++-++. .++...|+.+|.+|...+... .+
T Consensus 116 ~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQ---------------------l~HLA~TYAAVnaL~~~~~e~-A~----- 168 (423)
T KOG0365|consen 116 WLDDDVKENAIDFLFTCQGPEGGFGGGPGQ---------------------LPHLAPTYAAVNALCLCGSED-AY----- 168 (423)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCCCcc---------------------chhhhHHHHHHHHHHhcCcHH-HH-----
Confidence 577899999999999999999999854321 235556999999999986431 11
Q ss_pred HHHH--HHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcC
Q 028222 126 NNFI--TNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSC 202 (212)
Q Consensus 126 ~~~i--~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~ 202 (212)
..| ++..+||.+..++||||.-- -|...+.+..+|+....-+|+.. ++.-+--.+||.+||+-+||+|..|.+-
T Consensus 169 -~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~--deL~eG~~~wi~~CQtyEGG~GG~P~~E 245 (423)
T KOG0365|consen 169 -SSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPM--DELFEGTLDWIASCQTYEGGFGGEPGVE 245 (423)
T ss_pred -HHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhcccccCCcCCCcccc
Confidence 233 45699999999999999421 13344555556666666677774 5777888899999999999999888763
Q ss_pred C
Q 028222 203 P 203 (212)
Q Consensus 203 ~ 203 (212)
.
T Consensus 246 A 246 (423)
T KOG0365|consen 246 A 246 (423)
T ss_pred c
Confidence 3
No 46
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=99.26 E-value=1.5e-11 Score=103.59 Aligned_cols=177 Identities=12% Similarity=0.211 Sum_probs=104.3
Q ss_pred CCCCCccccccCC-------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhccc
Q 028222 4 HISKGGWTFSDKD-------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS 64 (212)
Q Consensus 4 ~~~~Ggw~~~~~~-------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~ 64 (212)
|.+.|||.....- ....|.+.|...|.-|+.+-.. .+++.+.+++.|+++||++.|-
T Consensus 1 Q~~~GGW~Kn~d~~~~~~~~~~~~~~~~~~~~~~TiDN~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQy 76 (289)
T PF09492_consen 1 QRPSGGWPKNIDYAGELSAKEQYYILKEKQHYNSTIDNDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQY 76 (289)
T ss_dssp --TTSS-SSS--TTT----TT-SSS-------SCE-GGGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-
T ss_pred CCCCCCCCCccccccccChhHhhhhhcccccccCcccChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhC
Confidence 6789999954210 1124677889999999886542 2456788999999999999999
Q ss_pred CCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCcc------chhHHHHHHHHHHHHHHh
Q 028222 65 KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH------KKNEVNNFITNGVKFTED 138 (212)
Q Consensus 65 ~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~------~~~~i~~~i~ra~~~L~~ 138 (212)
++|||+.+.+.... ++..++ |++ ++...+|..|.......+.+ .+.++..++.||+++|+.
T Consensus 77 pnGGWPQ~yP~~~~-Y~~~IT----fND--------dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~ 143 (289)
T PF09492_consen 77 PNGGWPQFYPLRGG-YHDHIT----FND--------DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILK 143 (289)
T ss_dssp TTS--BSECS--SG-GGGSEE-----GG--------GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCCCCC-CCCceE----Ecc--------HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988665433 333444 433 23445666666554432222 335678999999999999
Q ss_pred ccccCC----CcCCC---------Cccc------hhhHHHHHHHHHHHcCcC-CCChHHHHHHHHHHHhcccCCCcccc
Q 028222 139 SQKLDG----SWYGT---------WGVC------FIYSTWWAISGLVAAEKT-YSNCLAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 139 ~Q~~dG----~w~g~---------~~~~------~~~~T~~al~aL~~~g~~-~~~~~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
.|...+ .|... |... ....|+-++.-|...-.+ ++.-.+|+.|++||.++..++.-|-.
T Consensus 144 tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~~~ 222 (289)
T PF09492_consen 144 TQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRWEK 222 (289)
T ss_dssp HS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE-G
T ss_pred HHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCceeEe
Confidence 998433 44211 1110 112466677777766533 22356889999999998877766543
No 47
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.21 E-value=6.8e-10 Score=93.43 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=102.2
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
+|++.|||++-.... .+++-+|+.++++|..+.+. + .+.++.++++++||++.|++||+|..........+
T Consensus 61 ~Q~~dGgf~~w~~~~-~~~~~~Ta~~~~~L~~a~~~-----~-~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~-- 131 (282)
T cd02891 61 YQRSDGSFSAWGNSD-SGSTWLTAYVVKFLSQARKY-----I-DVDENVLARALGWLVPQQKEDGSFRELGPVIHREM-- 131 (282)
T ss_pred hcCCCCCccccCCCC-CCchHHHHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh--
Confidence 488999999654332 66777999999999988652 2 45678999999999999999999985432111000
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcC---------------
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWY--------------- 147 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~--------------- 147 (212)
++ .+.+.+..|+.++.+|...+... ...+.++++||.+.+...-+-+
T Consensus 132 -------~~---~~~~~~~~tA~al~~L~~~g~~~--------~~~~~~a~~~L~~~~~~~~~~~~~a~la~al~~~g~~ 193 (282)
T cd02891 132 -------KG---GVDDSVSLTAYVLIALAEAGKAC--------DASIEKALAYLETQLDGLLDPYALAILAYALALAGDS 193 (282)
T ss_pred -------cC---CcCCCcchHHHHHHHHHHhcccc--------hHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHcCcc
Confidence 00 01233456888888888765310 1345566666665544211110
Q ss_pred ----------------------------CCCcc-chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222 148 ----------------------------GTWGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 148 ----------------------------g~~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
...+. .....|++++.+....+ ......+.+.||++.++..|+|...
T Consensus 194 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~sT 269 (282)
T cd02891 194 TRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLST 269 (282)
T ss_pred HHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCcccH
Confidence 00010 12234555555554433 2346778899999988889999854
No 48
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.8e-10 Score=93.41 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=109.0
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|.+.|++.=.. .+--|+--+-.++.+|..+... ..-.+++||+|+++|-|-||||+.-++.
T Consensus 127 q~edGsF~gD~--wGEvDTRfs~~av~~L~lLg~l---------d~~nve~aVd~~~~CyN~DGGFG~~pGa-------- 187 (329)
T KOG0366|consen 127 QQEDGSFSGDI--WGEVDTRFSYCAVACLALLGKL---------DTINVEKAVDFVLSCYNFDGGFGCRPGA-------- 187 (329)
T ss_pred cCcCCcccCCc--ccccchhhhHHHHHHHHHHhhH---------HHhhHHHHHHHHHhhcccCCCcCCCCCc--------
Confidence 56777765211 1112333445555566665442 3456899999999999999999964332
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc-chhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV-CFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~-~~~~~T~~al 162 (212)
| ++......++-+|+..++++.- -.++--.||.++|.+.||-.|+-.. ..+--.++++
T Consensus 188 ----E---------SHagqifcCvgaLai~~~L~~v--------d~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvl 246 (329)
T KOG0366|consen 188 ----E---------SHAGQIFCCVGALAITGKLHLV--------DRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 246 (329)
T ss_pred ----c---------cccceehhhHHHHHHccchhhc--------CHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHH
Confidence 2 2333455678888888765321 1255678999999999998776432 1222378999
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCC
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNK 205 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~ 205 (212)
..|.-.|+.. +..-++-++||++||. +.|||.+.+....+.
T Consensus 247 sSL~iigrl~--wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~ 288 (329)
T KOG0366|consen 247 SSLAIIGRLH--WIDREKLTKFILACQDEETGGFSDRPGDEVDI 288 (329)
T ss_pred hHHHHhhhhh--hccHHHHHHHHHhcCCCCCCCcCCCCCCcccH
Confidence 9999999874 5567788899999998 799999888655443
No 49
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.17 E-value=2.6e-11 Score=108.91 Aligned_cols=147 Identities=22% Similarity=0.327 Sum_probs=109.5
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCc
Q 028222 20 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY 99 (212)
Q Consensus 20 ~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~ 99 (212)
+.+|||+.++.+|.....--. ..+...++++++||++.|+++|.|-...... .
T Consensus 327 s~adct~~~~~~l~a~~~yl~-----~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~----------------------~ 379 (517)
T COG1657 327 STADCTHRVVLALAALNAYLE-----AYDGQPIERALEWLLSDQEPDGSWYGRWGVC----------------------Y 379 (517)
T ss_pred CcccCCCccHHHHhhhhhccc-----cccCCcccHHHhhhhhhccccCceeeEEEEE----------------------E
Confidence 568999999999988754210 0014558999999999999999997543211 1
Q ss_pred cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-----------cchhhHHHHHHHHHHHc
Q 028222 100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-----------VCFIYSTWWAISGLVAA 168 (212)
Q Consensus 100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-----------~~~~~~T~~al~aL~~~ 168 (212)
+..|..++.+|..++.. +++...+++++.||...|.+||+|...+. .+....|.+|+.++..+
T Consensus 380 iY~~s~a~~~l~~~g~~------~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a 453 (517)
T COG1657 380 IYGTSGALSALALVGET------DENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTA 453 (517)
T ss_pred EEehhhhhhhhhccCcc------ccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHh
Confidence 22466677777776532 22356899999999999999999976542 22334678898888888
Q ss_pred CcCCCChHHHHHHHHHHHhcccCCCccccccCc
Q 028222 169 EKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS 201 (212)
Q Consensus 169 g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s 201 (212)
..+ +.+.++++++.+.+.|.++|+|+....+
T Consensus 454 ~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~e 484 (517)
T COG1657 454 LEP--NQEAIKPGINLLVSDQEPDGSWREAERE 484 (517)
T ss_pred ccc--chhhhcccccccccCcCCCCccccceec
Confidence 776 4677999999999999999999876544
No 50
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.4e-09 Score=89.12 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=106.4
Q ss_pred CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcC
Q 028222 6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLN 85 (212)
Q Consensus 6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~ 85 (212)
+.||++=.. ...+-.-.|-.++.+|..+.+.. -.+...-+...+||.++|+|||+|..-.
T Consensus 90 ~~G~f~~~~--g~~~hL~sT~~Ai~~L~~~d~~~------~~~~idr~~l~~fi~~lk~pdGsF~~~~------------ 149 (342)
T COG5029 90 PSGGFGGGP--GQDSHLASTVFAIQSLAMLDSLD------VLSRIDRDSLASFISGLKNPDGSFRSDL------------ 149 (342)
T ss_pred CCCCcCCCC--ccchhHHHHHHHHHHHHHhcccc------ccchhhHHHHHHHHHhccCCCCceeccc------------
Confidence 447777321 11233346778888888876531 0122233478999999999999997321
Q ss_pred cccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHHHH
Q 028222 86 PIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAISG 164 (212)
Q Consensus 86 ~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al~a 164 (212)
++. .+.+.-..++..|+.++... .+..+.+++||++.|+=||+|+.--+ ..+.-.|.+|+.+
T Consensus 150 ----~ge-----vDtr~~Y~al~ilsllg~~~--------~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaa 212 (342)
T COG5029 150 ----EGE-----VDTRFLYIALSILSLLGDLD--------KELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAA 212 (342)
T ss_pred ----CCc-----chHHHHHHHHHHHHHHhhcc--------hhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHH
Confidence 110 11122334455555555332 24567789999999999999954322 2233457778888
Q ss_pred HHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222 165 LVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 165 L~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~ 208 (212)
|+-++.....+ .+++-+.||..+|.+.||+..++.--.+.+|-
T Consensus 213 lalL~~Ld~ls-~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs 255 (342)
T COG5029 213 LALLGKLDKLS-DVEKLIRWLAERQLSSGGLNGRSNKLVDTCYS 255 (342)
T ss_pred HHHHhcccccc-hHHHHHHHHHHcccccCCcCCCcccCccchhh
Confidence 88777654222 28999999999999999998877777777663
No 51
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.05 E-value=9.8e-10 Score=92.57 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc--------ch-hhHHHHHHHHHHHc--C
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV--------CF-IYSTWWAISGLVAA--E 169 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~--------~~-~~~T~~al~aL~~~--g 169 (212)
..|...|..|+++..... .+.+.+++.||++||++.|.++|||+..+.. .+ ...+.-+|..|..+ +
T Consensus 44 ~aT~~e~~fLa~~y~~t~---d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEK---NAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred ccHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence 458888999998865432 3557899999999999999999999754321 01 11234555556432 2
Q ss_pred cC----------CCChHHHHHHHHHHHhcccCCCcc
Q 028222 170 KT----------YSNCLAIRKATDFLLNIQCDDGGW 195 (212)
Q Consensus 170 ~~----------~~~~~~i~~a~~~Ll~~Q~~dGgw 195 (212)
.. .+...+++||++||++.|-.+|||
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 11 123679999999999999888754
No 52
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.92 E-value=6.3e-09 Score=86.59 Aligned_cols=108 Identities=21% Similarity=0.137 Sum_probs=76.0
Q ss_pred HHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHH
Q 028222 56 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF 135 (212)
Q Consensus 56 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~ 135 (212)
-.-+++.|++||||+.| ... .++++=.||.|+..|........- + ...|.++++|
T Consensus 3 Yqr~L~y~~~DGsfs~f-~~~-------------------~~~s~WLTAfv~k~f~~a~~~i~v-d----~~~i~~a~~w 57 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAF-SSD-------------------SPSSTWLTAFVVKVFSQAKKYIFV-D----ENVICRAVKW 57 (246)
T ss_dssp HHHHHTTB-TTSSBBSS-TTT-------------------SSBBHHHHHHHHHHHHHHTTTS-C-E----HHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeecc-ccC-------------------CcccHHHHHHHHHHHHHHHHhhcC-C----HHHHHHHHHH
Confidence 34578899999999987 211 123444699999999987654221 1 4689999999
Q ss_pred HHhccccCCCcCCCCc----------cchhhHHHHHHHHHHHcCcC-----CCChHHHHHHHHHHHhc
Q 028222 136 TEDSQKLDGSWYGTWG----------VCFIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNI 188 (212)
Q Consensus 136 L~~~Q~~dG~w~g~~~----------~~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~Ll~~ 188 (212)
|+++|++||+|...-. .....-|++++.||...+.. +.....++||++||.+.
T Consensus 58 L~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 58 LISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH 125 (246)
T ss_dssp HHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence 9999999999954211 11345689999999998721 12467899999999776
No 53
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5e-09 Score=87.44 Aligned_cols=131 Identities=20% Similarity=0.201 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
-++++.||+++|+=||||+..+ .+|. +-..|..+|.+|+..+.+.++.-- -...++|
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~p------------g~Es---------HgG~TfCAlAsL~L~~~l~~e~l~--~~~~~er 232 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHP------------GGES---------HGGATFCALASLALMGKLIPEELS--NTSKVER 232 (347)
T ss_pred HHHHHHHHHHhhccccccccCC------------CCCC---------CcchhHHHHHHHHHHhhhhhhhhc--cccCHHH
Confidence 4789999999999999999532 2333 334699999999988766332100 0123799
Q ss_pred HHHHHHhccccCCCcCCCCccchhhHHHHHH---HHHHHcCcCCCChHHHHHHHHHHHhcccCC-CccccccCcCCCCcc
Q 028222 132 GVKFTEDSQKLDGSWYGTWGVCFIYSTWWAI---SGLVAAEKTYSNCLAIRKATDFLLNIQCDD-GGWGESYLSCPNKLH 207 (212)
Q Consensus 132 a~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al---~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d-Ggw~~~~~s~~~~~y 207 (212)
-++|++.+|..+|||-|+-.. ...|.+|. ..|.-++... -..-.+-.+||+++|..- |||...|.+.++...
T Consensus 233 lirWli~RQ~~sgGfqGR~NK--p~DTCYaFWigasLklL~~~~--~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~H 308 (347)
T KOG0367|consen 233 LIRWLIQRQVSSGGFQGRTNK--PVDTCYAFWIGASLKLLDADW--LIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLH 308 (347)
T ss_pred HHHHHHHHhhccCCcCCCCCC--CchhHHHHHHHHHHHHccchH--hhhHHHHHHHHHHhhhhhcCcccCCCccCchHHH
Confidence 999999999999999887432 23444444 4444444432 223345669999999875 999999988877654
Q ss_pred cc
Q 028222 208 MN 209 (212)
Q Consensus 208 ~~ 209 (212)
.|
T Consensus 309 sy 310 (347)
T KOG0367|consen 309 SY 310 (347)
T ss_pred HH
Confidence 43
No 54
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.7e-07 Score=78.35 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHHHHHHHcCcC--C--CChHHHHHHHHHHHhcccCCCccccccCcCC
Q 028222 129 ITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKT--Y--SNCLAIRKATDFLLNIQCDDGGWGESYLSCP 203 (212)
Q Consensus 129 i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al~aL~~~g~~--~--~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~ 203 (212)
.++++.|+++.|+=||+|...- +.++.-.|.+|+.+|.-.|.. . .+...+++-++|++..|..+|||...+.--.
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~ 255 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPV 255 (347)
T ss_pred HHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCc
Confidence 5788999999999999995432 233444577888888776654 1 1234589999999999999999998887777
Q ss_pred CCccc
Q 028222 204 NKLHM 208 (212)
Q Consensus 204 ~~~y~ 208 (212)
+++|-
T Consensus 256 DTCYa 260 (347)
T KOG0367|consen 256 DTCYA 260 (347)
T ss_pred hhHHH
Confidence 77764
No 55
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.59 E-value=3.1e-07 Score=77.58 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc--------cchhhH-HHHHHHHHHH--cC
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG--------VCFIYS-TWWAISGLVA--AE 169 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~--------~~~~~~-T~~al~aL~~--~g 169 (212)
+.|...|..|+++.... ..+++.+++.||++||++.|.++|||+..|- ..+..+ ..-+|.-|.. .+
T Consensus 39 ~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 39 DATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp GTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 46888999999987653 3467889999999999999999999986541 111111 2223333332 23
Q ss_pred cCC----------CChHHHHHHHHHHHhcccC-CC---ccccccC
Q 028222 170 KTY----------SNCLAIRKATDFLLNIQCD-DG---GWGESYL 200 (212)
Q Consensus 170 ~~~----------~~~~~i~~a~~~Ll~~Q~~-dG---gw~~~~~ 200 (212)
..+ +...+++|++++||++|.. +| +|.....
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD 160 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHD 160 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccC
Confidence 221 2367899999999999973 44 6775443
No 56
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=98.58 E-value=7.7e-07 Score=76.34 Aligned_cols=92 Identities=26% Similarity=0.253 Sum_probs=70.4
Q ss_pred ccchHHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCC-h
Q 028222 99 YVECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN-C 175 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~-~ 175 (212)
+||++|+|++||......... ....++..+|++.++.|++.|.+||.|+ ..|.|++|++||...+..+.. .
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~ 258 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESE 258 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHH
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchh
Confidence 578899999999988654322 2336788899999999999999999983 378999999999999887522 3
Q ss_pred HHHHHHHHHHHhcccCCCcccc
Q 028222 176 LAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 176 ~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
....+++++|++.. .+|.|..
T Consensus 259 w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 259 WNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHHHH-TTTTT-S
T ss_pred hHHHHHHHHHHHHh-hcCCCCC
Confidence 67899999999954 6999875
No 57
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.32 E-value=2.2e-06 Score=69.00 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCCCCccccccCCCCCCCC-ccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCcee
Q 028222 3 RHISKGGWTFSDKDHGLPVS-DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGIT 70 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~-d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~ 70 (212)
|+|++||++|-. ..||+ .+|=-++..+..+..++ ...++.++||.+ +|.+-+|+.
T Consensus 18 RrhedGGy~f~~---~Lpdti~~TyYAi~i~s~lg~ev----------Pr~EktiefL~d~~qt~~~~~a 74 (274)
T COG1689 18 RRHEDGGYCFVS---QLPDTINDTYYAIKIYSLLGHEV----------PRKEKTIEFLYDQMQTAGVGVA 74 (274)
T ss_pred hhcCCCCeEEec---cCcchhhhhhhhhhhhhhcCCcC----------chHHHHHHHHHHHHHHhhhHHH
Confidence 899999999843 36665 67766776666664433 336899999997 477777775
No 58
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.31 E-value=1.7e-06 Score=52.72 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccccCCCcCCCCcc-chhhHHHHHHHHHHHcC
Q 028222 129 ITNGVKFTEDSQKLDGSWYGTWGV-CFIYSTWWAISGLVAAE 169 (212)
Q Consensus 129 i~ra~~~L~~~Q~~dG~w~g~~~~-~~~~~T~~al~aL~~~g 169 (212)
++++++||++.|++||||.+.++. .+.+.|.+++.+|..+|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 688999999999999999887654 46788999999998764
No 59
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=67.94 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=97.5
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|.+.||++= -+.-+|-.--|=.++.||..+.++.. + +.-.-++..+||.++.++||||.-...+
T Consensus 133 ~~PeGGfgG--GPGQl~HLA~TYAAVnaL~~~~~e~A-~-----~~InR~~l~~fL~slK~~dGgFrmh~~G-------- 196 (423)
T KOG0365|consen 133 QGPEGGFGG--GPGQLPHLAPTYAAVNALCLCGSEDA-Y-----SSINREKLYQFLFSLKDPDGGFRMHVEG-------- 196 (423)
T ss_pred CCCCCCCCC--CCccchhhhHHHHHHHHHHhcCcHHH-H-----HHhhHHHHHHHHHHhcCCCCCeEeecCC--------
Confidence 457788653 33445555567777888888765421 1 1122467899999999999999843221
Q ss_pred cCcccccchhhcccCccch-HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccc-hhhHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVEC-TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVC-FIYSTWWA 161 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~-Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~-~~~~T~~a 161 (212)
.+|+ .+.+..+.+.+-.. +. .+-.+-..+||++.|.=+|||+|.-+.. +---|.++
T Consensus 197 ---------------E~DvRs~YcA~svasllni-~~------deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCa 254 (423)
T KOG0365|consen 197 ---------------EVDVRSAYCALSVASLLNI-PM------DELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCA 254 (423)
T ss_pred ---------------cchHHHHHHHHHHHHHHCC-Cc------HHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHH
Confidence 1111 22222222222111 21 1344556999999999999997754321 11126678
Q ss_pred HHHHHHcCcCCCChHHHHHHHHHHHhccc-CCCcccccc
Q 028222 162 ISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESY 199 (212)
Q Consensus 162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~ 199 (212)
+.+|.-++.. +.-.+++-++|..++|. ..|||....
T Consensus 255 lAalalLn~~--d~ln~~~Ll~W~~~RQm~~E~GFqGRt 291 (423)
T KOG0365|consen 255 LAALALLNEM--DQLNLEKLLEWAVRRQMRFEGGFQGRT 291 (423)
T ss_pred HHHHHHHhhh--hhhCHHHHHHHHHHhhhhhhccccccc
Confidence 8888877665 35678899999999998 689986543
No 60
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.09 E-value=6.1e-06 Score=50.19 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLF 113 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~ 113 (212)
++++++||+++|++||||+..+.. ++++..|..++.+|..+
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~---------------------~~d~~~t~~~~~~L~ll 43 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGG---------------------ESDTCYTYCALAALSLL 43 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTS---------------------SBBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCC---------------------CCChHHHHHHHHHHHHc
Confidence 689999999999999999954321 23444577788887754
No 61
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.45 E-value=0.00045 Score=59.48 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=71.8
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCC-cCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhccc
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEI-VGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH 97 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~-~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~ 97 (212)
..++|+.|.+.+||.=+.+.-... .-......+|++.++.|++.|.+||.||.
T Consensus 183 ~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------------------------- 236 (326)
T PF01122_consen 183 QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN-------------------------- 236 (326)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS--------------------------
T ss_pred CCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc--------------------------
Confidence 456899999999998876532110 00112346788888899999999999982
Q ss_pred CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHH
Q 028222 98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVA 167 (212)
Q Consensus 98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~ 167 (212)
+..|+.|+++|...... + .+-.-.+.|++++|+.. .++|.|. ....++.++-+|.-
T Consensus 237 --iySTglAmQAL~~~~~~-~----~~~~w~C~k~~~~ll~~-i~~G~F~------nP~a~aQiLPaL~g 292 (326)
T PF01122_consen 237 --IYSTGLAMQALSVSPSP-P----SESEWNCQKALDALLKE-ISQGAFQ------NPMAIAQILPALNG 292 (326)
T ss_dssp --TTTHHHHHHHHTT-SS--S----SHHHHHHHHHHHHHHHH-HTTTTT-------SHHHHHHHHHHHTT
T ss_pred --hhhHHHHHHHHhcCCCC-C----cchhhHHHHHHHHHHHH-hhcCCCC------CHHHHHHHHHHHcC
Confidence 22599999999877532 1 11235789999999995 4699882 23466777766643
No 62
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.31 E-value=0.00062 Score=55.11 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=55.4
Q ss_pred CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceee-cCCCCChhhhhhc
Q 028222 6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELL 84 (212)
Q Consensus 6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~l 84 (212)
+.|||.+.+ ...-|..++|=.++..|-.+++. -.+.+.++||.+.||+||||.. +..
T Consensus 196 ~~Ggf~~~P-~syPPYiE~t~ya~r~lelL~~k-----------~~i~~~~rFI~slqN~nGGFRRS~~~---------- 253 (274)
T COG1689 196 DWGGFTEVP-NSYPPYIEPTFYALRGLELLGGK-----------YCISDHIRFIRSLQNQNGGFRRSYEL---------- 253 (274)
T ss_pred cCCCcccCC-CCCCCccchHHHHHhHHHHHccC-----------cCchHHHHHHHHhhcCCCCeeeeEec----------
Confidence 458888875 55568899999999999888652 2357788999999999999973 211
Q ss_pred CcccccchhhcccCccchHHHHHHHHHHH
Q 028222 85 NPIEFLDEVIIEHDYVECTASALKAMTLF 113 (212)
Q Consensus 85 ~~~e~~~~~~~d~~~~~~Ta~al~aL~~~ 113 (212)
..+..+.|..||..|..+
T Consensus 254 -----------GISt~e~tYrAl~~L~~l 271 (274)
T COG1689 254 -----------GISTFENTYRALASLASL 271 (274)
T ss_pred -----------cccchHHHHHHHHHHHHH
Confidence 124455688888887764
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.42 E-value=0.0044 Score=59.48 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
--.+++||+..|.+||||+.... |. ....+-.|..||.||...+.. ...|.|
T Consensus 117 FP~~~~wIl~nQ~~DGsWG~~~~---------------~~----~~D~ll~TLAcvlAL~~w~~~---------~~~i~r 168 (800)
T PLN02592 117 FPSSLQWIANNQLSDGSWGDAYL---------------FS----AHDRLINTLACVVALKSWNLH---------PEKCEK 168 (800)
T ss_pred CHHHHHHHHHccCCCCCCCCCCC---------------cc----hHHHHHhHHHHHHHHHHhhcc---------HHHHHH
Confidence 45789999999999999984210 00 001223599999999887532 257899
Q ss_pred HHHHHHhcc
Q 028222 132 GVKFTEDSQ 140 (212)
Q Consensus 132 a~~~L~~~Q 140 (212)
|+.||.+.-
T Consensus 169 Gl~fi~~nl 177 (800)
T PLN02592 169 GMSFFRENI 177 (800)
T ss_pred HHHHHHHHH
Confidence 999998654
No 64
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.32 E-value=0.057 Score=50.79 Aligned_cols=125 Identities=17% Similarity=0.092 Sum_probs=76.1
Q ss_pred CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec-CCCCChhhhhhcCcccccchhhc
Q 028222 17 HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW-EPAGAPSWIELLNPIEFLDEVII 95 (212)
Q Consensus 17 ~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~-~~~~~~~~~~~l~~~e~~~~~~~ 95 (212)
+++.-+-|++.+++||++++. .+..++.++||.+.|.+||+|... ..+.... | .
T Consensus 292 Y~y~W~RD~~~~a~Al~~~G~-----------~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~------~--------~ 346 (616)
T TIGR01577 292 YAYCWGRDASYIATALDRAGY-----------HDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLA------P--------L 346 (616)
T ss_pred CceeccccHHHHHHHHHHCCC-----------HHHHHHHHHHHHHhhCcCCCcceEEecCCCCC------C--------C
Confidence 445556799999999999743 477899999999999999998532 1110000 0 0
Q ss_pred c-cCccchHHHHHHHHHHHHhhCCc-cchhHHHHHHHHHHHHHHhcccc------CCCcCCCCccchhhHHHHHHHHHHH
Q 028222 96 E-HDYVECTASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKL------DGSWYGTWGVCFIYSTWWAISGLVA 167 (212)
Q Consensus 96 d-~~~~~~Ta~al~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~~------dG~w~g~~~~~~~~~T~~al~aL~~ 167 (212)
+ ..-.|.++.+|.++..+.....+ ...+++-+.++++++|+.+...+ .|-|..+.+ .+++..+++..||.+
T Consensus 347 ~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~G-~~~~t~a~~~aAL~~ 425 (616)
T TIGR01577 347 QWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEEREG-VFTYTASAVYGGLDA 425 (616)
T ss_pred CCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecCC-ccCccHHHHHHHHHH
Confidence 1 12234588888877655332111 11234557899999999996533 334533222 244555666666654
No 65
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.96 E-value=0.07 Score=50.46 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=74.9
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec-CCCCChhhhhhcCcccccchhhccc
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW-EPAGAPSWIELLNPIEFLDEVIIEH 97 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~-~~~~~~~~~~~l~~~e~~~~~~~d~ 97 (212)
+.-+-|.+.++.||..++. .+..++..+||.+.|.++|.|... ..+....|. .
T Consensus 294 yvW~RD~a~~a~AL~~~G~-----------~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~---------------~ 347 (648)
T TIGR01535 294 LVWPRDLYQVANAFLAAGD-----------VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWT---------------G 347 (648)
T ss_pred EEehhhHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCC---------------C
Confidence 4456699999999999853 467899999999999999998522 111111110 0
Q ss_pred CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc--CCCcCCCCccchhhHHHHHHHHHHHc
Q 028222 98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL--DGSWYGTWGVCFIYSTWWAISGLVAA 168 (212)
Q Consensus 98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~--dG~w~g~~~~~~~~~T~~al~aL~~~ 168 (212)
--.|.|+.+|.++..+.... ...+...|+++++||.+.-.. .|-|..+.+. ..+..+.++.||.++
T Consensus 348 iQlD~~g~~i~~~~~l~~~~----~~~~~~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 348 IQLDETAFPILLAYRLHRYD----HAFYDKMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLTAA 415 (648)
T ss_pred ccccHHHHHHHHHHHHHHcC----cHHHHHHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHHHH
Confidence 12457999888776654321 133456799999999997422 2444322222 234455555666553
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.90 E-value=0.016 Score=55.72 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccccCCCcCCCCc---cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 127 NFITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~dG~w~g~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
+..-..++||++.|.+||||+..-. ....-.|..|+.||...++. ...|+|++.||.+.
T Consensus 115 p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~n 176 (800)
T PLN02592 115 PQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEKCEKGMSFFREN 176 (800)
T ss_pred CCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence 3456789999999999999965311 12246789999999887664 46789999999763
No 67
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.83 E-value=0.14 Score=44.37 Aligned_cols=101 Identities=15% Similarity=0.023 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHH--HHHHH-HHhhCCccchhH
Q 028222 48 EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASAL--KAMTL-FQKLYPKHKKNE 124 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al--~aL~~-~~~~~~~~~~~~ 124 (212)
..+.+++.++.|...|++||.|........ ..+..++++.++ .+|.. +.... .+.++
T Consensus 213 ~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~------------------~~~~~etSatA~~a~~l~~gi~~g~--~d~~~ 272 (336)
T PF07470_consen 213 LLEIAKKLADALARYQDEDGLWYQDLDDPD------------------PGNYRETSATAMFAYGLLRGIRLGL--LDPEE 272 (336)
T ss_dssp HHHHHHHHHHHHHTTSTTTSBEBSBTTTTT------------------TTS-BEHHHHHHHHHHHHHHHHTTS--STHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceecCCCC------------------CCCcccHHHHHHHHHHHHHHHHcCC--CccHH
Confidence 456788889999999999999974321100 011234444444 44443 22211 12466
Q ss_pred HHHHHHHHHHHHHhc-cccCCC--cCCCC---c----------cchhhHHHHHHHHHHHc
Q 028222 125 VNNFITNGVKFTEDS-QKLDGS--WYGTW---G----------VCFIYSTWWAISGLVAA 168 (212)
Q Consensus 125 i~~~i~ra~~~L~~~-Q~~dG~--w~g~~---~----------~~~~~~T~~al~aL~~~ 168 (212)
+.++++|+++.|++. -++||. +.+.- . ....++.++.|+|+.++
T Consensus 273 y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 273 YRPAAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp HHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 789999999999999 888887 43211 0 11247788888887764
No 68
>PLN02279 ent-kaur-16-ene synthase
Probab=95.82 E-value=0.011 Score=56.79 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
--.+++||+..|.+||+|+..... . | ...+.+-.|..||.||.+.+.. + ..++|
T Consensus 75 Fp~~~~wil~nQ~~dGsWg~~~~~--~-----------~----~~~D~ll~TlAcvlAL~~w~~~-~--------~~~~~ 128 (784)
T PLN02279 75 FPECVKWLLENQLEDGSWGLPHDH--P-----------L----LVKDALSSTLASILALKKWGVG-E--------EQINK 128 (784)
T ss_pred ChHHHHHHHhcCCCCCCCCCCCCC--c-----------c----hhHHhhHHHHHHHHHHHHHhcC-c--------ccchh
Confidence 457889999999999999842110 0 0 0011233599999999998653 2 23466
Q ss_pred HHHHHH
Q 028222 132 GVKFTE 137 (212)
Q Consensus 132 a~~~L~ 137 (212)
++.|+.
T Consensus 129 gl~fi~ 134 (784)
T PLN02279 129 GLQFIE 134 (784)
T ss_pred hHHHHH
Confidence 666665
No 69
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.088 Score=53.78 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCCCccc-cccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceee
Q 028222 5 ISKGGWT-FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG 71 (212)
Q Consensus 5 ~~~Ggw~-~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~ 71 (212)
+.+|.+- |-.. .....+..||.+|+.+....+ | ..+++..+.++++||..+|.++|.|..
T Consensus 985 ~~DgSySaFg~~-~~~~stWLtafvlr~f~~a~~-~-----i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 985 RADGSYSAFGSS-DRSGSTWLTAFVLRVFSQAKE-Y-----IFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred ccCCChhhhcCC-CCcccHHHHHHHHHHhhhccC-c-----eEecHHHHHHHHHHHHHhhccCceEec
Confidence 4556655 5432 236678899999999998743 2 357789999999999999999999963
No 70
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.49 E-value=0.15 Score=44.03 Aligned_cols=180 Identities=17% Similarity=0.100 Sum_probs=96.8
Q ss_pred CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCC-CcHHHHHHHHHHHHhcccC-CCceeecC-CCCChhhhh
Q 028222 6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK-MEPERFYDAANFMLYIQSK-TGGITGWE-PAGAPSWIE 82 (212)
Q Consensus 6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~-~~~~~i~~av~~Ll~~Q~~-dGgw~~~~-~~~~~~~~~ 82 (212)
+.|++-.........-+|..-.++..|..+.+.. |++ ..+.+++.+..+.....++ +|-|.... ......+
T Consensus 107 ~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~t----gd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~-- 180 (336)
T PF07470_consen 107 SDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLT----GDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADW-- 180 (336)
T ss_dssp CTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHH----TGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTT--
T ss_pred CCCccccCCCCCCceeeccccccHHHHHHHHHHH----CCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCc--
Confidence 4676654333333444666656777777655422 222 2244455555555555555 56553111 0000000
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCc------cch
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG------VCF 154 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~------~~~ 154 (212)
.+..+ .-..+-++.+|.......|+ ...+++...+++.++.|...|.+||.|+-... ...
T Consensus 181 --------s~~~W----sRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~e 248 (336)
T PF07470_consen 181 --------SDSFW----SRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRE 248 (336)
T ss_dssp --------ST--B----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BE
T ss_pred --------ccccC----cchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCccc
Confidence 00000 01134456666654433222 12355677888999999999999999953221 123
Q ss_pred hhHHHHHHHHHHH---cCcCC--CChHHHHHHHHHHHhc-ccCCCc--cccccCcCC
Q 028222 155 IYSTWWAISGLVA---AEKTY--SNCLAIRKATDFLLNI-QCDDGG--WGESYLSCP 203 (212)
Q Consensus 155 ~~~T~~al~aL~~---~g~~~--~~~~~i~~a~~~Ll~~-Q~~dGg--w~~~~~s~~ 203 (212)
+.+|+++..+|.. .|... ...+.++|+++.|++. -++||. +...+...+
T Consensus 249 tSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~ 305 (336)
T PF07470_consen 249 TSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGKLGLKGVCGGTP 305 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTT
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCCeEEeeeEeecC
Confidence 4577777777743 45541 2367899999999999 778887 554443333
No 71
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=95.12 E-value=0.21 Score=51.79 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCC-cCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhccc
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEI-VGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH 97 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~-~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~ 97 (212)
|.+++=|+..++.|+.+.+..... ...+.....++.++.-|+++|..+|+|+.|.+...
T Consensus 1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~-------------------- 1226 (1621)
T COG2373 1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGS-------------------- 1226 (1621)
T ss_pred ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCC--------------------
Confidence 557778888888888876654322 34455678999999999999999999997654211
Q ss_pred CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
+++-.|+.++.+|....+. .+..+ .+.+.++++++++.-...
T Consensus 1227 ~d~~ltaYa~~Fl~~A~e~--g~~vp--~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1227 GDPWLTAYAVDFLLRAREQ--GYSVP--SDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred cchhhhHHHHHHHhhhhhc--CcCCC--HHHHHHHHHHHHHHHhCc
Confidence 1223588888888877433 11111 356777766555543333
No 72
>PLN02279 ent-kaur-16-ene synthase
Probab=94.32 E-value=0.066 Score=51.64 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhccccCCCcCCCCc-----cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHh
Q 028222 127 NFITNGVKFTEDSQKLDGSWYGTWG-----VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLN 187 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~dG~w~g~~~-----~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~ 187 (212)
+..-..++||++.|.+||+|+..-. ....-+|..++.||...++.+ ..+++++.||.+
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~---~~~~~gl~fi~~ 135 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE---EQINKGLQFIEL 135 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc---ccchhhHHHHHH
Confidence 3456789999999999999953211 122457999999999887653 457888888864
No 73
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=94.09 E-value=3 Score=36.37 Aligned_cols=119 Identities=13% Similarity=-0.010 Sum_probs=73.6
Q ss_pred CCCccccccCCCCCC-----CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCC-CceeecCCCCCh
Q 028222 6 SKGGWTFSDKDHGLP-----VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKT-GGITGWEPAGAP 78 (212)
Q Consensus 6 ~~Ggw~~~~~~~~~~-----~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~d-Ggw~~~~~~~~~ 78 (212)
+.|||.+.-...+.| .+-.+|..|.++..+...- +++...+..+++++||.+. ..++ |||........
T Consensus 31 ~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~----~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g- 105 (384)
T cd00249 31 EAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLG----WRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG- 105 (384)
T ss_pred CCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC-
Confidence 457777532222232 2446699999998865421 3455677889999999985 4456 99963211000
Q ss_pred hhhhhcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc-cCCCc
Q 028222 79 SWIELLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-LDGSW 146 (212)
Q Consensus 79 ~~~~~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~dG~w 146 (212)
...+ ..+...-+.+|.+|+.+.... ..++..+.+++.+++|.+... ++|++
T Consensus 106 --------------~~~~~~~~l~~~a~~l~ala~~~~at---~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 106 --------------RPVDATKDLYSHAFALLAAAQAAKVG---GDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred --------------CCcccccchHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 0001 113445677888988876543 235566788999999998885 45654
No 74
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=93.37 E-value=0.65 Score=42.85 Aligned_cols=120 Identities=9% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcC
Q 028222 6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLN 85 (212)
Q Consensus 6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~ 85 (212)
+.|||.=......+.+ .+..+-|.++..+... .+++.-.+.+++.|+.|+++|.+||-.+.+..... ..
T Consensus 44 ~~g~we~~~~~~~~~~-~~~g~wl~a~a~~~~~----~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~------~~ 112 (520)
T PF07944_consen 44 AYGGWEGEFPGWWFRG-HDVGKWLEAAAYAYAY----TGDPELKAKADEIVDELAAAQQPDGYLGTYPEERN------FN 112 (520)
T ss_pred cCCCCccCCCCCccCC-CcHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhccCCceecccccccc------cc
Confidence 5688872222333333 3778889888775331 23455578899999999999999998876643220 00
Q ss_pred cccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHH---Hhcccc
Q 028222 86 PIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT---EDSQKL 142 (212)
Q Consensus 86 ~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L---~~~Q~~ 142 (212)
+...+.+ +.-...+-...+.+|..+.... ..+++.+.+.|..+|+ .+...+
T Consensus 113 ~~~~w~~---~~he~Y~~~~ll~gl~~~y~~t---G~~~~L~v~~k~ad~~~~~~~~~~~ 166 (520)
T PF07944_consen 113 PDDRWAP---DMHELYCLGKLLEGLIDYYEAT---GNERALDVATKLADWVYRRLSRLGP 166 (520)
T ss_pred cccCCCC---CccceehHhHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHHHhccCCH
Confidence 0000110 1111334556788887665432 2356778999999999 555444
No 75
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.33 E-value=2.9 Score=36.41 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcccCC-Ccee-ecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc-c-chhH
Q 028222 49 PERFYDAANFMLYIQSKT-GGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-H-KKNE 124 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~d-Ggw~-~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~-~-~~~~ 124 (212)
++.+..-..-..-.|.|+ |=|- .|....+.+|.+..+....| +.. ..+-+.++|..+-+..|. + .+.+
T Consensus 158 d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~f----WaR----g~gW~~mal~d~le~lp~~~~~r~~ 229 (357)
T COG4225 158 DEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAF----WAR----GNGWYAMALADLLELLPEDHPDRRE 229 (357)
T ss_pred HHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCcee----eec----ccchHHHHHHHHHHhCCCCCchHHH
Confidence 444444444445556676 5443 23344444554432211111 111 133445555554444332 2 3456
Q ss_pred HHHHHHHHHHHHHhccccCCCcCCCCcc--c----hhhHHHHHHHHHHH---cCcCC-CChHHHHHHHHHHHhcccCCC
Q 028222 125 VNNFITNGVKFTEDSQKLDGSWYGTWGV--C----FIYSTWWAISGLVA---AEKTY-SNCLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 125 i~~~i~ra~~~L~~~Q~~dG~w~g~~~~--~----~~~~T~~al~aL~~---~g~~~-~~~~~i~~a~~~Ll~~Q~~dG 193 (212)
+...++.-++=|++.|+++|-|...... . .+.+|+.-..||.. .|... +..+.++||.+-|+.+-.++|
T Consensus 230 l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g 308 (357)
T COG4225 230 LLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEG 308 (357)
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccccc
Confidence 7788899999999999999999643221 1 23456666667766 66643 346799999999999988766
No 76
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=92.67 E-value=1.7 Score=37.84 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhc--ccCCCceeecCCCCChhhhhhcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHH
Q 028222 50 ERFYDAANFMLYI--QSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVN 126 (212)
Q Consensus 50 ~~i~~av~~Ll~~--Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~ 126 (212)
..++.++.|.... ...+|||...-... . .+.+ .-.+..++..|.+|+.+..... .++..
T Consensus 14 ~~~~~~~~fw~~~~~d~~~gg~~~~l~~~-g--------------~~~~~~k~~~~~ar~i~~~a~a~~~~~---~~~~l 75 (384)
T cd00249 14 WLLEDLLPFWLEAGLDREAGGFFECLDRD-G--------------QPFDTDRRLWLQARQVYCFAVAYLLGW---RPEWL 75 (384)
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEECCC-C--------------CCCCCCCeEEEecHHHHHHHHHHHhcC---ChhHH
Confidence 4467888888874 33479987421111 0 0011 2245678899999998765431 24456
Q ss_pred HHHHHHHHHHHhccc-cC-CCcCCCCc--------cchhhHHHHHHHHHHHcCcC---CCChHHHHHHHHHHHhccc-CC
Q 028222 127 NFITNGVKFTEDSQK-LD-GSWYGTWG--------VCFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNIQC-DD 192 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~-~d-G~w~g~~~--------~~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~Ll~~Q~-~d 192 (212)
+..+++++||.+... ++ |+|.-... ....+.-++++.||+.+... +.....+++.+++|.+... ++
T Consensus 76 ~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~ 155 (384)
T cd00249 76 EAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDH 155 (384)
T ss_pred HHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCC
Confidence 788999999999654 46 88853221 12367778888888775332 2234567778888888764 45
Q ss_pred Cccc
Q 028222 193 GGWG 196 (212)
Q Consensus 193 Ggw~ 196 (212)
|++.
T Consensus 156 g~~~ 159 (384)
T cd00249 156 PGAF 159 (384)
T ss_pred Cccc
Confidence 6653
No 77
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.58 Score=48.09 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc----chhhHHHHHHHHHHHcCcCCC-ChHH
Q 028222 103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVAAEKTYS-NCLA 177 (212)
Q Consensus 103 Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----~~~~~T~~al~aL~~~g~~~~-~~~~ 177 (212)
+-.++..|-......+..+ .+...-+..+..-++.-+++||++ ..|+. ..+--|++++..+..+..... +...
T Consensus 948 ni~v~~YL~~t~q~~~~~k-~ka~~~l~~GyqrqL~yk~~DgSy-SaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~ 1025 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLTPELK-RKALKFLEQGYQRQLTYKRADGSY-SAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNV 1025 (1436)
T ss_pred hhhHHHHHhhhhccChhHH-HHHHHHHHHHHHHHHhhhccCCCh-hhhcCCCCcccHHHHHHHHHHhhhccCceEecHHH
Confidence 4456666665554433322 334456777788888889999998 34433 234568899999988754322 3568
Q ss_pred HHHHHHHHHhcccCCCccccc
Q 028222 178 IRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 178 i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
+.++++||+++|.++|+|...
T Consensus 1026 i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1026 ITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred HHHHHHHHHHhhccCceEecc
Confidence 899999999999999998753
No 78
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=92.19 E-value=1.4 Score=41.94 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHhcccC--CCceeecCCCCChhhhhhcCcccccch-hhcccCcc--chHHHHHHHHHHHHhhCCccch
Q 028222 48 EPERFYDAANFMLYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDE-VIIEHDYV--ECTASALKAMTLFQKLYPKHKK 122 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~-~~~d~~~~--~~Ta~al~aL~~~~~~~~~~~~ 122 (212)
..+.+.+.+--|+.++.. .|+.-.-.... ++ |..++ ...|+..+ -..+.++.||..++.
T Consensus 249 ~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts-------~p--e~~g~~~n~dYryvW~RD~a~~a~AL~~~G~------- 312 (648)
T TIGR01535 249 GNSLYYVSMMILKAHEDKTNPGAYIASLSIP-------WG--DGQADDNTGGYHLVWPRDLYQVANAFLAAGD------- 312 (648)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEecCCC-------CC--ccCCCCCCCceEEEehhhHHHHHHHHHHCCC-------
Confidence 356678888888888775 38875322100 10 11111 12233322 346778888888763
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcCCC--------CccchhhHHHHHHHHHHH---cCcCCCChHHHHHHHHHHHhcc
Q 028222 123 NEVNNFITNGVKFTEDSQKLDGSWYGT--------WGVCFIYSTWWAISGLVA---AEKTYSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g~--------~~~~~~~~T~~al~aL~~---~g~~~~~~~~i~~a~~~Ll~~Q 189 (212)
.+..++.++||.+.|.++|.|... |..--...++..|.++.. .+.. ...+.|+++++||.+.-
T Consensus 313 ---~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~-~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 313 ---VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHA-FYDKMLKPAADFIVKNG 386 (648)
T ss_pred ---HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHcC
Confidence 256899999999999999998532 211122345555554443 3432 24678999999999864
No 79
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=85.21 E-value=2.2 Score=40.27 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhccccC-CCcCCC----------C--ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCC
Q 028222 127 NFITNGVKFTEDSQKLD-GSWYGT----------W--GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~d-G~w~g~----------~--~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG 193 (212)
..+++.+-=|+.++.++ |+.-.. | +-+-...++++++||..+|.. +.+++.++||.+.|.+||
T Consensus 256 ~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G 331 (616)
T TIGR01577 256 SLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRDG 331 (616)
T ss_pred HHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCC
Confidence 56677766677777766 763111 1 112234578899999999975 588999999999999999
Q ss_pred cccccc
Q 028222 194 GWGESY 199 (212)
Q Consensus 194 gw~~~~ 199 (212)
+|-..+
T Consensus 332 ~~~~~~ 337 (616)
T TIGR01577 332 SWQQRY 337 (616)
T ss_pred CcceEE
Confidence 986543
No 80
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=84.79 E-value=7.4 Score=33.60 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc--cCCCcCCCC-------ccchhhHHHHHHHHHHHc--
Q 028222 100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK--LDGSWYGTW-------GVCFIYSTWWAISGLVAA-- 168 (212)
Q Consensus 100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~--~dG~w~g~~-------~~~~~~~T~~al~aL~~~-- 168 (212)
+.+++..|-+++.+... + .++..+.++++++||.+... ++|+|.-.. .....|..++++.||+.+
T Consensus 20 ~~~q~R~~~~fa~a~~~--g--~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~ 95 (346)
T PF07221_consen 20 LWVQARQLYTFARAYRL--G--RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA 95 (346)
T ss_dssp HHHHHHHHHHHHHHHHT--T--SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC
T ss_pred eeeeHHHHHHHHHHHhc--C--chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH
Confidence 34577788888776552 2 34567889999999999984 558885321 123468889999999874
Q ss_pred -CcCCCChHHHHHHHHHHHhcc-cCC-Cccccc
Q 028222 169 -EKTYSNCLAIRKATDFLLNIQ-CDD-GGWGES 198 (212)
Q Consensus 169 -g~~~~~~~~i~~a~~~Ll~~Q-~~d-Ggw~~~ 198 (212)
|.+ ...+.+++++++|.+.- +++ |++...
T Consensus 96 tg~~-~~~~~A~~~~~~l~~~~~d~~~g~~~~~ 127 (346)
T PF07221_consen 96 TGDP-EALELAEQTLEFLERRFWDPEGGGYRES 127 (346)
T ss_dssp TT-T-THHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred hCCh-hHHHHHHHHHHHHHHHhcccccCcceec
Confidence 332 23567788899998875 454 555543
No 81
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=83.00 E-value=29 Score=29.95 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhcccCCCceeec
Q 028222 45 EKMEPERFYDAANFMLYIQSKTGGITGW 72 (212)
Q Consensus 45 ~~~~~~~i~~av~~Ll~~Q~~dGgw~~~ 72 (212)
++...+.+.++++|+.+.+.++|.|+..
T Consensus 183 ~~~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 183 KPSLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred CccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 4566889999999999999899999754
No 82
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=82.34 E-value=7.6 Score=33.89 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhcccCCCceeecCCC-CChhhhhhcCcccccchhhcccCccch--HHHHHHHHHHHHhhCCccchhH
Q 028222 48 EPERFYDAANFMLYIQSKTGGITGWEPA-GAPSWIELLNPIEFLDEVIIEHDYVEC--TASALKAMTLFQKLYPKHKKNE 124 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~-~~~~~~~~l~~~e~~~~~~~d~~~~~~--Ta~al~aL~~~~~~~~~~~~~~ 124 (212)
-.+.++..++-|+++|..+|=|-..--+ +. .+.+++ |+....+|..-... +.-.++
T Consensus 230 l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~-------------------~sy~EsSaSa~faYallkgi~~--G~l~~~ 288 (357)
T COG4225 230 LLNVLRDLVDALIRYQDESGLWHTILDDGRP-------------------GSYLESSASAGFAYALLKGINL--GILDPE 288 (357)
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhccCCC-------------------CCchhhhHHHHHHHHHHHHHhc--CCCCch
Confidence 3567889999999999999999754211 00 123334 44445555542211 222234
Q ss_pred HHHHHHHHHHHHHhccccCCC
Q 028222 125 VNNFITNGVKFTEDSQKLDGS 145 (212)
Q Consensus 125 i~~~i~ra~~~L~~~Q~~dG~ 145 (212)
..+.++||++-|+..-.++|-
T Consensus 289 ~~~~~~kA~~aLl~~i~~~g~ 309 (357)
T COG4225 289 YAPVAEKALDALLGHIDEEGE 309 (357)
T ss_pred hhHHHHHHHHHHHhhcccccc
Confidence 458999999999999988773
No 83
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=81.71 E-value=5.9 Score=36.61 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC-----------CCcc--chhhHHHHHHHHHHHc-
Q 028222 103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG-----------TWGV--CFIYSTWWAISGLVAA- 168 (212)
Q Consensus 103 Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g-----------~~~~--~~~~~T~~al~aL~~~- 168 (212)
++.-|.+++...... .++++.+.+++.|+.|++.|++||-... .|.. ...|.....+.||.+.
T Consensus 62 ~g~wl~a~a~~~~~~---~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y 138 (520)
T PF07944_consen 62 VGKWLEAAAYAYAYT---GDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYY 138 (520)
T ss_pred HHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHH
Confidence 667777777665432 2367888999999999999999994421 2322 1145555566666643
Q ss_pred ---CcCCCChHHHHHHHHHH
Q 028222 169 ---EKTYSNCLAIRKATDFL 185 (212)
Q Consensus 169 ---g~~~~~~~~i~~a~~~L 185 (212)
|.. ..-+++.|..+|+
T Consensus 139 ~~tG~~-~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 139 EATGNE-RALDVATKLADWV 157 (520)
T ss_pred HHHCcH-HHHHHHHHHHHHH
Confidence 433 2466788899999
No 84
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=81.21 E-value=7.6 Score=40.80 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCcc---chhhHHHHHHHHHHHcC---cC
Q 028222 100 VECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVAAE---KT 171 (212)
Q Consensus 100 ~~~Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~---~~~~~T~~al~aL~~~g---~~ 171 (212)
.+-|+..++.|........+ .....+...++.++.-|++.|..+|+| +-|+. ....-|++++..|.++. ..
T Consensus 1170 ~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F-~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~ 1248 (1621)
T COG2373 1170 AEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAF-GLWGGNGSGDPWLTAYAVDFLLRAREQGYS 1248 (1621)
T ss_pred hhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCce-eecCCCCCcchhhhHHHHHHHhhhhhcCcC
Confidence 45566655555544332222 233556788999999999999999998 55643 34567888888888773 22
Q ss_pred CCChHHHHHHHHHHHhcc
Q 028222 172 YSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 172 ~~~~~~i~~a~~~Ll~~Q 189 (212)
. -..++.++.+++++.-
T Consensus 1249 v-p~~~~~~~~~~~~~~l 1265 (1621)
T COG2373 1249 V-PSDALNQMLERLLEYL 1265 (1621)
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 2 3678888877655533
No 85
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=77.31 E-value=36 Score=29.72 Aligned_cols=138 Identities=9% Similarity=0.116 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHH
Q 028222 26 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS 105 (212)
Q Consensus 26 a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~ 105 (212)
||.|-++..+.=.++.....+.-.+.++..++|+.+.|-|+|-++.-..++...+.+.. +| .++
T Consensus 221 AhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWc-----HG----------ApG- 284 (403)
T KOG2787|consen 221 AHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWC-----HG----------APG- 284 (403)
T ss_pred hhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeec-----cC----------Cch-
Confidence 45555555422122221222333467899999999999999999866554433221111 11 122
Q ss_pred HHHHHHHHHhhCCccchhHHHHHHHHHHH--HHHhccccCCCcCCCCccch-hhHHHHHHHHHHHcCcCCCChHHHHHHH
Q 028222 106 ALKAMTLFQKLYPKHKKNEVNNFITNGVK--FTEDSQKLDGSWYGTWGVCF-IYSTWWAISGLVAAEKTYSNCLAIRKAT 182 (212)
Q Consensus 106 al~aL~~~~~~~~~~~~~~i~~~i~ra~~--~L~~~Q~~dG~w~g~~~~~~-~~~T~~al~aL~~~g~~~~~~~~i~~a~ 182 (212)
++..|+......+ .+++..+..++.+ |=...-+.. .|.|+ +.+.+++...|.++-.+++.--...+-.
T Consensus 285 v~~~L~kAy~VF~---Eekyl~aa~ecadvVW~rGlLkkg------~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFa 355 (403)
T KOG2787|consen 285 VAYTLAKAYQVFK---EEKYLEAAMECADVVWKRGLLKKG------VGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFA 355 (403)
T ss_pred HHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhhhcC------CcccccccCchhhhHhHHHHcCcHHHHHHHHHHH
Confidence 2444555443322 2334444444433 333333321 11221 3456678889988865543344555666
Q ss_pred HHHHhc
Q 028222 183 DFLLNI 188 (212)
Q Consensus 183 ~~Ll~~ 188 (212)
+||++.
T Consensus 356 e~lld~ 361 (403)
T KOG2787|consen 356 EWLLDY 361 (403)
T ss_pred HHHHhh
Confidence 777764
No 86
>PLN02909 Endoglucanase
Probab=69.37 E-value=40 Score=31.03 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=49.4
Q ss_pred CCcHHHHHHHHHHHHhcccCCCceeecCCCC---ChhhhhhcCcccccch---hhccc--CccchHHHHHHHHHHHHhhC
Q 028222 46 KMEPERFYDAANFMLYIQSKTGGITGWEPAG---APSWIELLNPIEFLDE---VIIEH--DYVECTASALKAMTLFQKLY 117 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~---~~~~~~~l~~~e~~~~---~~~d~--~~~~~Ta~al~aL~~~~~~~ 117 (212)
+...+.++=.+|||+++|.++|++-.-.++. +..| .+|.+.-.. ..++. +..++|+....+|+......
T Consensus 120 ~d~ldeikw~~D~llk~~~~~~~~y~qVg~~~~Dh~~W---~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vf 196 (486)
T PLN02909 120 ENVRAAIRWGTDYFLKAASRKNRLYVQVGDPNLDHQCW---VRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVF 196 (486)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccC---CChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 3445678889999999999998886333221 1112 111110000 11221 22345665555555544332
Q ss_pred Ccc---chhHHHHHHHHHHHHHHhcc
Q 028222 118 PKH---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 118 ~~~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
... ...++..+.+++.+|..+..
T Consensus 197 k~~D~~yA~~lL~~Ak~~y~fA~~~~ 222 (486)
T PLN02909 197 RHVDHKYSRRLLNKAKLLFKFAKAHK 222 (486)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 221 12445667788899998875
No 87
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=68.69 E-value=22 Score=30.57 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhccc--CCCceeecCCCCChhhhhhcCcccccchhhcc-cCcc
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS--KTGGITGWEPAGAPSWIELLNPIEFLDEVIIE-HDYV 100 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~--~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d-~~~~ 100 (212)
.++..|-++..+... |.+...+.++++++||.+.-. .+|||........ .++ ..+.
T Consensus 22 ~q~R~~~~fa~a~~~-----g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~----------------~~~~~~~~ 80 (346)
T PF07221_consen 22 VQARQLYTFARAYRL-----GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG----------------PLDPQKDL 80 (346)
T ss_dssp HHHHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE----------------EEE--EEH
T ss_pred eeHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC----------------CCccccch
Confidence 567888888765442 345567889999999998763 5688863221110 011 1233
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc-ccCCCc
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLDGSW 146 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q-~~dG~w 146 (212)
...+.+|++|+.+... ..++..+.+++++++|.+.. ++++++
T Consensus 81 Y~~af~l~ala~~~~t----g~~~~~~~A~~~~~~l~~~~~d~~~g~ 123 (346)
T PF07221_consen 81 YDQAFALLALAEARAT----GDPEALELAEQTLEFLERRFWDPEGGG 123 (346)
T ss_dssp HHHHHHHHHHHHHHCT----T-TTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred HHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHhcccccCc
Confidence 4467789998884321 22345678889999998885 565333
No 88
>PLN03009 cellulase
Probab=67.41 E-value=53 Score=30.34 Aligned_cols=27 Identities=4% Similarity=-0.049 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHHHHhccccCCCcC
Q 028222 121 KKNEVNNFITNGVKFTEDSQKLDGSWY 147 (212)
Q Consensus 121 ~~~~i~~~i~ra~~~L~~~Q~~dG~w~ 147 (212)
..+++.+.++=+++||+++|.++|.++
T Consensus 111 ~~~diLdeikw~~D~llkm~~~~~~~y 137 (495)
T PLN03009 111 ELRNSLVAIRWATDYLLKTVSQPNRIF 137 (495)
T ss_pred ccHHHHHHHHHHHHHHHHcccCcCeEE
Confidence 346678888999999999988877664
No 89
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.60 E-value=1.2e+02 Score=29.00 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCC
Q 028222 23 DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKT 66 (212)
Q Consensus 23 d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~d 66 (212)
|-.+..+.||+..... .+++..-+..+++.+||+...+.|
T Consensus 411 ~wNglmi~aLa~a~~~----~~d~~~l~~A~~~~~fi~~~l~~~ 450 (667)
T COG1331 411 DWNGLMIAALAEAGRV----LGDPEYLEAAERAADFILDNLYVD 450 (667)
T ss_pred ccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhccc
Confidence 3357788888876552 255666789999999999988777
No 90
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=66.07 E-value=29 Score=31.04 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccc--h--hhcc--cCccchHHHHHHHHHHHHhhCCcc
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLD--E--VIIE--HDYVECTASALKAMTLFQKLYPKH 120 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~--~--~~~d--~~~~~~Ta~al~aL~~~~~~~~~~ 120 (212)
..-+.++=+++||+++|.++|.+-...++. ...+....+-|... + ..+. .+..+.|+.+..+|+.........
T Consensus 95 dllde~kwg~D~llkm~~~~~~~~~qvgdg-~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~ 173 (444)
T PF00759_consen 95 DLLDEAKWGLDWLLKMQDSDGTFYAQVGDG-GVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDF 173 (444)
T ss_dssp HHHHHHHHHHHHHHHTBSCTTEEEEEESTH-HHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhccCCCCceeeeccCc-cchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccC
Confidence 345678889999999999987764332211 11111111111100 0 0111 113345666556666554332221
Q ss_pred ---chhHHHHHHHHHHHHHHhcc
Q 028222 121 ---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 121 ---~~~~i~~~i~ra~~~L~~~Q 140 (212)
..+++..+.+++-+|+.+..
T Consensus 174 d~~~A~~~L~~A~~~~~~a~~~~ 196 (444)
T PF00759_consen 174 DPAYAAQCLKAAKEAYAFAKKNP 196 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Confidence 23556778888899998876
No 91
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.35 E-value=74 Score=30.45 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=41.3
Q ss_pred CCccc-cccCCCCCCC------CccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCCCcee
Q 028222 7 KGGWT-FSDKDHGLPV------SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTGGIT 70 (212)
Q Consensus 7 ~Ggw~-~~~~~~~~~~------~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dGgw~ 70 (212)
.||+. ||+ +..|.. .-|.|.-|.++..+-.. .|++.+...++..++||++- ..++|||.
T Consensus 251 gGGF~RYSt-D~~WlvPHFEKMLyDnA~l~~~y~~ay~~----tgd~~y~~~a~~i~~~l~rel~sp~ggFy 317 (667)
T COG1331 251 GGGFFRYST-DREWLVPHFEKMLYDNALLLRAYAEAYRA----TGDDLYRRAAEGILDYLLRELYSPEGGFY 317 (667)
T ss_pred CCceeeeec-CCceechhHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence 45554 887 565643 34667777777664331 36677889999999999954 67788884
No 92
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=63.84 E-value=73 Score=27.44 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
.+++..+..........+.++++++|+.+.+.++|.|....
T Consensus 171 ~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~ 211 (343)
T cd04794 171 LYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSL 211 (343)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCcc
Confidence 34433333332233357789999999999988899887543
No 93
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=60.45 E-value=1.2e+02 Score=29.55 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcCCCC----ccch---hhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC-CCc
Q 028222 123 NEVNNFITNGVKFTEDSQKLDGSWYGTW----GVCF---IYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGG 194 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g~~----~~~~---~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~-dGg 194 (212)
+++.+.+.+.+++|++.+..+..|.... .... ..+.++++..|............+.+++++..+...+ .+.
T Consensus 606 ~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~ 685 (825)
T cd04792 606 ERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWN 685 (825)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcC
Confidence 4566778899999987765543321100 0011 2344455555544433322345667777776665433 345
Q ss_pred cc
Q 028222 195 WG 196 (212)
Q Consensus 195 w~ 196 (212)
|.
T Consensus 686 w~ 687 (825)
T cd04792 686 WP 687 (825)
T ss_pred CC
Confidence 54
No 94
>PLN02266 endoglucanase
Probab=59.89 E-value=1.2e+02 Score=28.24 Aligned_cols=92 Identities=10% Similarity=0.128 Sum_probs=49.7
Q ss_pred CCcHHHHHHHHHHHHhcccCCCceeecCCCC---ChhhhhhcCcccc-cch--hhccc--CccchHHHHHHHHHHHHhhC
Q 028222 46 KMEPERFYDAANFMLYIQSKTGGITGWEPAG---APSWIELLNPIEF-LDE--VIIEH--DYVECTASALKAMTLFQKLY 117 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~---~~~~~~~l~~~e~-~~~--~~~d~--~~~~~Ta~al~aL~~~~~~~ 117 (212)
+...+.++=.+|||+++|.++|++-.-.++. +..| .+|.+. ... ..++. +..+.|+.+..+|+......
T Consensus 130 pd~Ldelkw~~D~llk~~~~~~~vy~qVg~~~~Dh~~W---~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vf 206 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAHPDTIYVQVGDANKDHACW---ERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVF 206 (510)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccC---CChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHh
Confidence 3345778899999999999998886333221 1122 111110 000 12222 23345655555555443332
Q ss_pred Ccc---chhHHHHHHHHHHHHHHhcc
Q 028222 118 PKH---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 118 ~~~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
... ..+++..+.+++.+|..+..
T Consensus 207 k~~D~~yA~~~L~~Ak~ly~fa~~~~ 232 (510)
T PLN02266 207 RKSDPTYSKLLVRRAIRVFQFADKYR 232 (510)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 222 22456677788899998764
No 95
>PLN02308 endoglucanase
Probab=58.80 E-value=71 Score=29.52 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcccCCCceeecCCCC---ChhhhhhcCcccccch---hhccc--CccchHHHHHHHHHHHHhhCCcc
Q 028222 49 PERFYDAANFMLYIQSKTGGITGWEPAG---APSWIELLNPIEFLDE---VIIEH--DYVECTASALKAMTLFQKLYPKH 120 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~---~~~~~~~l~~~e~~~~---~~~d~--~~~~~Ta~al~aL~~~~~~~~~~ 120 (212)
.+.++=.+|||+++|.++|++-.-.++. +..| .+|.+.-.. ..++. +..+.++.+..+|+.........
T Consensus 115 ldeikw~~D~llkm~~~~~~vy~qVg~~~~dh~~W---~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~ 191 (492)
T PLN02308 115 VKAVKWATDYLMKATAIPNVVYVQVGDAYSDHNCW---ERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKR 191 (492)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCCCCccCC---CChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcccc
Confidence 4668889999999999999875333221 1112 111110000 11221 22245555555666544332221
Q ss_pred ---chhHHHHHHHHHHHHHHhcc
Q 028222 121 ---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 121 ---~~~~i~~~i~ra~~~L~~~Q 140 (212)
...++..+.+++.+|+.+.+
T Consensus 192 D~~YA~~lL~~Ak~ly~fa~~~~ 214 (492)
T PLN02308 192 DPAYSRLLLDRAVRVFAFADKYR 214 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 12456677788899999875
No 96
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=58.77 E-value=84 Score=29.87 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=69.5
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCC----hhhhhhcCcccccchh
Q 028222 18 GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGA----PSWIELLNPIEFLDEV 93 (212)
Q Consensus 18 ~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~----~~~~~~l~~~e~~~~~ 93 (212)
.+..+-|++.+..||..++ ..+...+...||...|+++|-|......+. ..|+. + + +..
T Consensus 283 ~y~W~RD~~~~~~AL~~~G-----------~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~-~---~--~~~ 345 (612)
T COG3387 283 RYVWPRDASYAALALLAIG-----------YKKEALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLP-V---S--GYY 345 (612)
T ss_pred eEEccCcHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCceeeEEecCCCcccccccc-c---c--CCC
Confidence 3445668999999998874 256788999999999999987653222111 11211 0 0 000
Q ss_pred hcccCccchHHHHHHHHHHHHhhCCc-c-chhHHHHHHHHHHHHHHh------c-cccC-CCcCCCCccchhhHHHHHHH
Q 028222 94 IIEHDYVECTASALKAMTLFQKLYPK-H-KKNEVNNFITNGVKFTED------S-QKLD-GSWYGTWGVCFIYSTWWAIS 163 (212)
Q Consensus 94 ~~d~~~~~~Ta~al~aL~~~~~~~~~-~-~~~~i~~~i~ra~~~L~~------~-Q~~d-G~w~g~~~~~~~~~T~~al~ 163 (212)
..-|=-++.|+....+|..++....+ + -.+.....+.++.++|.. . ..|+ +-|..+++ .+.|..+....
T Consensus 346 ~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~WEer~g-~~~yt~~~~~a 424 (612)
T COG3387 346 NSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDLWEERGG-HFTYTKATVYA 424 (612)
T ss_pred CCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCCccceecccCC-cccchHHHHHH
Confidence 00011234577777777664432111 0 000012334555555554 2 2344 34444444 45666666666
Q ss_pred HHHHc
Q 028222 164 GLVAA 168 (212)
Q Consensus 164 aL~~~ 168 (212)
||.++
T Consensus 425 gLd~A 429 (612)
T COG3387 425 GLDAA 429 (612)
T ss_pred HHHHH
Confidence 77553
No 97
>PLN02345 endoglucanase
Probab=56.79 E-value=83 Score=28.90 Aligned_cols=90 Identities=9% Similarity=0.106 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHhcccCCCceeecCCCC---ChhhhhhcCcccccch---hhccc--CccchHHHHHHHHHHHHhhCCc
Q 028222 48 EPERFYDAANFMLYIQSKTGGITGWEPAG---APSWIELLNPIEFLDE---VIIEH--DYVECTASALKAMTLFQKLYPK 119 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~---~~~~~~~l~~~e~~~~---~~~d~--~~~~~Ta~al~aL~~~~~~~~~ 119 (212)
..+.|+=.+|||+++|.++|++-.-.++. +..| .+|.+.-.. ..++. +..++|+.+..+|+........
T Consensus 84 ~ldelkw~~Dyllk~~~~~~~~y~qVg~~~~Dh~~W---~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk~ 160 (469)
T PLN02345 84 AKDSLKWITDYLINAHPSENVLYIQVGDPKLDHKCW---ERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFKS 160 (469)
T ss_pred HHHHHhHHHHHHHHhcCCCCeEEEEecCCCCCcccC---CChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34668889999999999999885333221 1122 111110000 11221 2234555555555554333222
Q ss_pred c---chhHHHHHHHHHHHHHHhcc
Q 028222 120 H---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 120 ~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
. ...++..+.+++.+|..+.+
T Consensus 161 ~D~~YA~~lL~~Ak~ly~fa~~~~ 184 (469)
T PLN02345 161 SDSTYSDTLLKHAKQLFNFADKYR 184 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 22456677788899998874
No 98
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.17 E-value=67 Score=28.38 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcccc---CCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 127 NFITNGVKFTEDSQKL---DGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~---dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
...++.++||.+.-.. +..| .....++-.+|...|... +...++.+++-+.+....||-+++.+
T Consensus 132 ~~k~~l~~wL~~~~~~~~~~nNW--------~lF~v~v~~~L~~~G~~~-d~~~i~~~l~~~e~~Y~GdGWY~DG~ 198 (361)
T PF10022_consen 132 EEKENLVDWLKQIRGIKPPDNNW--------LLFRVMVEAFLKKVGEEY-DEERIDYDLERIEEWYLGDGWYSDGP 198 (361)
T ss_pred HHHHHHHHHHHhcCcCCCccchh--------HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHhccCCccccCC
Confidence 4567779999866543 3333 445677888999999886 67899999999999998887776655
No 99
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=55.41 E-value=64 Score=28.79 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc-cccCCCcCCCC--------ccchhhHHHHHHHHHHHcCc
Q 028222 100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS-QKLDGSWYGTW--------GVCFIYSTWWAISGLVAAEK 170 (212)
Q Consensus 100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~-Q~~dG~w~g~~--------~~~~~~~T~~al~aL~~~g~ 170 (212)
.-+++.-|-+++..+.+. ++ ....+.+.-+++|+.+. .+++|+|+--. .....|+.++|++|++.+-.
T Consensus 54 ~~~~~Rqvy~fA~A~~~g--~~-~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~ 130 (388)
T COG2942 54 LRVQARQVYCFAVAGLLG--WR-GPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAAT 130 (388)
T ss_pred eeeehhHHHHHHHHHHhc--CC-ccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHh
Confidence 345667777777766552 12 22568899999999855 67788885211 11246899999999977532
Q ss_pred C--CCChHHHHHHHHHHHhcc
Q 028222 171 T--YSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 171 ~--~~~~~~i~~a~~~Ll~~Q 189 (212)
. ++..+...++++.|.+.-
T Consensus 131 a~~~~a~~~~~~a~~~l~~~~ 151 (388)
T COG2942 131 AGPPRADELLDEALDVLERRF 151 (388)
T ss_pred cCChhHHHHHHHHHHHHHHHH
Confidence 2 123567777877776543
No 100
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=55.30 E-value=1.5e+02 Score=27.02 Aligned_cols=78 Identities=6% Similarity=-0.117 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc-cchhHHHH
Q 028222 49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-HKKNEVNN 127 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~-~~~~~i~~ 127 (212)
...++++++.+...|+++|.++...|...... . ..++-....+..+..+.....+ .-.++.-+
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~-~---------------~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~ 231 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPSVAPSYGGGG-F---------------GIPDWSLAWIIIPWDYYLYTGDREFLEEYYP 231 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SSBSS---SSG-G---------------GBHHHHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCceEEecccCCCC-C---------------CCccHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56799999999999999999985433210000 0 0011122233333333222111 11233457
Q ss_pred HHHHHHHHHHhcccc
Q 028222 128 FITNGVKFTEDSQKL 142 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~ 142 (212)
.+++.++|+.+..++
T Consensus 232 ~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 232 AMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHhCCc
Confidence 899999999998888
No 101
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=52.68 E-value=20 Score=32.16 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcccCCCcee
Q 028222 50 ERFYDAANFMLYIQSKTGGIT 70 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~ 70 (212)
.+.-.|.+||...|++-|||+
T Consensus 380 aaFyaAadWlV~NQd~kGGW~ 400 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWS 400 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCc
Confidence 456789999999999999998
No 102
>PLN02613 endoglucanase
Probab=52.51 E-value=95 Score=28.75 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHHHHhcccCCCceeecCCCC---ChhhhhhcCcccccch---hhccc--CccchHHHHHHHHHHHHhhC
Q 028222 46 KMEPERFYDAANFMLYIQSKTGGITGWEPAG---APSWIELLNPIEFLDE---VIIEH--DYVECTASALKAMTLFQKLY 117 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~---~~~~~~~l~~~e~~~~---~~~d~--~~~~~Ta~al~aL~~~~~~~ 117 (212)
+...+.++=.+|||+++|.+++++-.-.++. +..| ..|.+.-.. ..++. +..+.|+.+..+|+......
T Consensus 112 ~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~~W---~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vf 188 (498)
T PLN02613 112 GYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQCW---ERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVF 188 (498)
T ss_pred hHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcccccc---CCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhc
Confidence 3345667779999999998877764222211 1122 111110000 01121 22345655555555544333
Q ss_pred Ccc---chhHHHHHHHHHHHHHHhcc
Q 028222 118 PKH---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 118 ~~~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
.+. ...++..+.+++.+|..+..
T Consensus 189 k~~D~~yA~~~L~~Ak~ly~~a~~~~ 214 (498)
T PLN02613 189 KDVDSSYSSKLLNHARSLFEFADKYR 214 (498)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 222 22456677788899998764
No 103
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=51.98 E-value=99 Score=27.44 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceee-cCCCCChhhhhhcCcccccchhhcccCccc
Q 028222 23 DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYVE 101 (212)
Q Consensus 23 d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~ 101 (212)
=+++..|.||+++++. +.+..+..++++++.+..|.++..-+|+.+. +-...+..++...+ -.... +..|.+|
T Consensus 34 wdiG~yL~al~AA~~l--glIs~~e~~~Rl~~~L~tL~~lpl~~g~lPn~~Y~t~T~~~~~~~~---~p~~~-~gwSavD 107 (367)
T PF11329_consen 34 WDIGSYLMALVAAREL--GLISREEFDQRLEKTLATLEKLPLFRGHLPNKWYNTQTGQPVDYGN---QPGER-IGWSAVD 107 (367)
T ss_pred HHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhCcccCCcCccceeecCcCcccccCC---CCCcc-CCccHhh
Confidence 3678999999998764 2344445678999999999999998998753 11112222111100 00000 2233444
Q ss_pred hHHHHHHHHHHHHhhCCcc
Q 028222 102 CTASALKAMTLFQKLYPKH 120 (212)
Q Consensus 102 ~Ta~al~aL~~~~~~~~~~ 120 (212)
.+..+.+|..+...+|.+
T Consensus 108 -~GrLl~~L~il~~~~P~~ 125 (367)
T PF11329_consen 108 -IGRLLIALRILKQRYPEY 125 (367)
T ss_pred -HHHHHHHHHHHHHHCchH
Confidence 677888888887666643
No 104
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=51.51 E-value=92 Score=26.39 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHhh-cCCCCCcCCCCcHHHHHHHHHHHHhcccC-CCceeecCCCC----ChhhhhhcCcccccchhhccc
Q 028222 24 CSSESFVCCLHLS-TMPPEIVGEKMEPERFYDAANFMLYIQSK-TGGITGWEPAG----APSWIELLNPIEFLDEVIIEH 97 (212)
Q Consensus 24 ~Ta~~l~al~~~~-~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~-dGgw~~~~~~~----~~~~~~~l~~~e~~~~~~~d~ 97 (212)
-.+-++.+|..+. +. ...+...+.+++.++|+.+.... +|+|+...... ...|.
T Consensus 168 G~~Gi~~~L~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC---------------- 227 (355)
T PF05147_consen 168 GIAGILYALLRLYKKG----TKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWC---------------- 227 (355)
T ss_dssp SHHHHHHHHCHCCHHT------HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSS----------------
T ss_pred cHHHHHHHHHHhhhcc----cCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccc----------------
Confidence 3456666666543 21 22345677899999999998854 77787443211 11111
Q ss_pred CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc--ccCCCcCCCCccch-hhHHHHHHHHHHHcCcCCCC
Q 028222 98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ--KLDGSWYGTWGVCF-IYSTWWAISGLVAAEKTYSN 174 (212)
Q Consensus 98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q--~~dG~w~g~~~~~~-~~~T~~al~aL~~~g~~~~~ 174 (212)
.-+.-++.++....... ..+++.+.+.++++-+.+.+ ..+.+. |+ ..+....+.-+...-..+..
T Consensus 228 ---~G~~Gi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l------CHG~aG~~~~l~~~~~~~~~~~~ 295 (355)
T PF05147_consen 228 ---YGSPGILLALLKAYKIL---DDEEYDEEAEQALESILQKGLFLNNPSL------CHGTAGILEILLDLYKYTGDEEY 295 (355)
T ss_dssp ---SSHHHHHHHHHHHHHHC---T-HHHHHHHHHHHHHHHHH-TCTTSS-S------TTSHHHHHHHHHHHHHHH--HCC
T ss_pred ---cCcHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHccccCCCCce------eCchHHhHHHHHHHHHHcCCHHH
Confidence 11233344444443332 23455666777777776643 222222 22 23444444444443222223
Q ss_pred hHHHHHHHHHHHhcccC
Q 028222 175 CLAIRKATDFLLNIQCD 191 (212)
Q Consensus 175 ~~~i~~a~~~Ll~~Q~~ 191 (212)
.+.+++.++.+++.-..
T Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (355)
T PF05147_consen 296 KELANKLIQKLLSYYDE 312 (355)
T ss_dssp HHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 55667667777665544
No 105
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=49.72 E-value=1.6e+02 Score=24.75 Aligned_cols=142 Identities=12% Similarity=-0.035 Sum_probs=68.8
Q ss_pred CccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhccc-CCCceeecCCCCChhhhhhcCcccccchhhcccCcc
Q 028222 22 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS-KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV 100 (212)
Q Consensus 22 ~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~-~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~ 100 (212)
....+-++.+|+.+.+. .+++...+.+.++++++++... .+++|...... .... ..+ +
T Consensus 138 ~hG~aGi~~~L~~l~~~----t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-~~w---------------c 196 (321)
T cd04791 138 LHGWAGIALFLLRLYKA----TGDSRYLELAEEALDKELARAVVDDGGLLQVDEG-ARLL-PYL---------------C 196 (321)
T ss_pred ccCcHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHhhccCCCCceEcCCC-CccC-ccc---------------C
Confidence 34566666677665442 2344566788889999887654 45777532111 0000 000 0
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccch-hhHHHHHHHHHHHcCcCCCChHHHH
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCF-IYSTWWAISGLVAAEKTYSNCLAIR 179 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~-~~~T~~al~aL~~~g~~~~~~~~i~ 179 (212)
--++-++.+|..+.+.. .++++.+.++++++.+.+.-..+-+| |+ ..+...++..+.....++.....++
T Consensus 197 hG~aGi~~~l~~l~~~~---~d~~~~~~a~~~~~~~~~~~~~~~~l------chG~~G~~~~l~~~~~~~~~~~~~~~~~ 267 (321)
T cd04791 197 SGSAGLGLLMLRLEAIT---GDKRWRDEADGIAHAALSSCYANPGL------FSGTAGLGAHLNDLAAEGDNALYKAAAE 267 (321)
T ss_pred CCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhhhhccCccc------cCCcHhHHHHHHhhcccccChHHHHHHH
Confidence 01233344444444332 22455667777777776553222222 11 2233444443333322222344566
Q ss_pred HHHHHHHhcccCCC
Q 028222 180 KATDFLLNIQCDDG 193 (212)
Q Consensus 180 ~a~~~Ll~~Q~~dG 193 (212)
+-.++|++.-..++
T Consensus 268 ~~~~~~~~~~~~~~ 281 (321)
T cd04791 268 RLALYLIATADEIE 281 (321)
T ss_pred HHHHHhccccCCcc
Confidence 66677776554454
No 106
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=49.56 E-value=2.3e+02 Score=27.65 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCC-ChhhhhhcCcccccchhhcccCccchH
Q 028222 25 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAG-APSWIELLNPIEFLDEVIIEHDYVECT 103 (212)
Q Consensus 25 Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~-~~~~~~~l~~~e~~~~~~~d~~~~~~T 103 (212)
.|-++.+|+.+.+.- +.+...+.+.+++++|++.+..+..|....... ...+ .+| +
T Consensus 589 ~aGii~~Ll~l~~~~----~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~--------aHG-----------~ 645 (825)
T cd04792 589 AAGLILVLLSLYELF----LSERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGF--------AHG-----------A 645 (825)
T ss_pred cHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHhhhhccCCcccccccccccc--------ccc-----------H
Confidence 355555666554321 234566778899999987655444332110000 0000 011 3
Q ss_pred HHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 104 ASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 104 a~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
+-++.+|..+.... ..+++.+.+.++++++.+...++
T Consensus 646 sGi~~aL~~l~~~~---~d~~~~~~a~~~l~~~~~~~~~~ 682 (825)
T cd04792 646 SGIAWALLRLYKVT---GDSRYLKLAHKALKYERRLFSEE 682 (825)
T ss_pred HHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHhcCHh
Confidence 33455565554432 22456678888898887765443
No 107
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=43.58 E-value=27 Score=31.28 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhccccCCCcCC---------------CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHh--c
Q 028222 126 NNFITNGVKFTEDSQKLDGSWYG---------------TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLN--I 188 (212)
Q Consensus 126 ~~~i~ra~~~L~~~Q~~dG~w~g---------------~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~--~ 188 (212)
..+.-.|.+||...|++-|||.- .|. ...+...|+..|.++-....+..-++.|++-|.- .
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~--SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~pyk~ 456 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWH--SAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPYKI 456 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchH--hhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCeEe
Confidence 35778899999999999999952 121 1233445666666654333234556666665532 2
Q ss_pred ccCCCc
Q 028222 189 QCDDGG 194 (212)
Q Consensus 189 Q~~dGg 194 (212)
-..|||
T Consensus 457 ~S~dgG 462 (594)
T KOG3760|consen 457 NSSDGG 462 (594)
T ss_pred ecCCCc
Confidence 236776
No 108
>PLN03009 cellulase
Probab=43.44 E-value=1.4e+02 Score=27.65 Aligned_cols=91 Identities=9% Similarity=0.064 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCC---ChhhhhhcCcccc-cch--hhcccC--ccchHHHHHHHHHHHHhhCC
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAG---APSWIELLNPIEF-LDE--VIIEHD--YVECTASALKAMTLFQKLYP 118 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~---~~~~~~~l~~~e~-~~~--~~~d~~--~~~~Ta~al~aL~~~~~~~~ 118 (212)
...+.++=.+|||+++|.++|++-.-.++. +..| .+|.+. ... ..++.+ ..++++.+..+|+.......
T Consensus 114 diLdeikw~~D~llkm~~~~~~~y~qVg~~~~Dh~~W---~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vfk 190 (495)
T PLN03009 114 NSLVAIRWATDYLLKTVSQPNRIFVQVGDPIADHNCW---ERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAFR 190 (495)
T ss_pred HHHHHHHHHHHHHHHcccCcCeEEEEeCCCCCCcccC---cChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 334566778999999998888875333221 1112 111110 000 112211 12344555555554433322
Q ss_pred cc---chhHHHHHHHHHHHHHHhcc
Q 028222 119 KH---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 119 ~~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
.. ...++..+.+++.+|..+.+
T Consensus 191 ~~D~~YA~~ll~~Ak~ly~~a~~~~ 215 (495)
T PLN03009 191 SSDPGYSETLLRNAIKTFQFADMYR 215 (495)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 12445667788899998765
No 109
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=42.38 E-value=2e+02 Score=24.02 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHH
Q 028222 26 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS 105 (212)
Q Consensus 26 a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~ 105 (212)
+-.+.+|+.+.+. +++...+.+++++++|++....+..+..+..... .. ..-..-.+-
T Consensus 86 aG~~~~ll~l~~~-----~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~-~~----------------~G~~hG~aG 143 (321)
T cd04791 86 AGIGLALLYFART-----GDPALLEAAAKIAELLAEALERGDPALLWPDFDR-VD----------------HGLLHGWAG 143 (321)
T ss_pred HHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHhhccccccccccCCC-CC----------------CccccCcHH
Confidence 4445555555432 2355677889999999876544333332211000 00 000111334
Q ss_pred HHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCc
Q 028222 106 ALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSW 146 (212)
Q Consensus 106 al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w 146 (212)
++.+|..+.+... .+++.+.+.++++++++...+ +++|
T Consensus 144 i~~~L~~l~~~t~---d~~~l~~A~~~~~~~~~~~~~~~~g~ 182 (321)
T cd04791 144 IALFLLRLYKATG---DSRYLELAEEALDKELARAVVDDGGL 182 (321)
T ss_pred HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 4555555443322 245667889999998877643 4555
No 110
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=42.09 E-value=15 Score=13.94 Aligned_cols=6 Identities=50% Similarity=1.387 Sum_probs=4.3
Q ss_pred CCCccc
Q 028222 6 SKGGWT 11 (212)
Q Consensus 6 ~~Ggw~ 11 (212)
..|||+
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 468886
No 111
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=39.37 E-value=50 Score=18.37 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHh
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLN 187 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~ 187 (212)
..+..||...+.+ +++|++||++
T Consensus 16 ~~~~~AL~~~~~d------~~~A~~~L~~ 38 (38)
T cd00194 16 EEARKALRATNNN------VERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHhCCC------HHHHHHHHhC
Confidence 3467777776643 7888888864
No 112
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=38.97 E-value=45 Score=29.83 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHhccccCCCcC
Q 028222 121 KKNEVNNFITNGVKFTEDSQKLDGSWY 147 (212)
Q Consensus 121 ~~~~i~~~i~ra~~~L~~~Q~~dG~w~ 147 (212)
..+++.+.++=+++||+++|.++|.|.
T Consensus 92 ~~~dllde~kwg~D~llkm~~~~~~~~ 118 (444)
T PF00759_consen 92 GIPDLLDEAKWGLDWLLKMQDSDGTFY 118 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHTBSCTTEEE
T ss_pred cHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 346678899999999999999966553
No 113
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=38.39 E-value=68 Score=24.85 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCCcC------------CCCcHHHHHHHHHHHHhcccCCCceee
Q 028222 27 ESFVCCLHLSTMPPEIVG------------EKMEPERFYDAANFMLYIQSKTGGITG 71 (212)
Q Consensus 27 ~~l~al~~~~~~~~~~~~------------~~~~~~~i~~av~~Ll~~Q~~dGgw~~ 71 (212)
..+.+|..+.+.|..+.| ...+++.++..+.||+.+=.-.+||+.
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp~~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPVPEDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCCcccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 356667766655544333 347889999999999987656779973
No 114
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=37.32 E-value=2.1e+02 Score=25.73 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=36.7
Q ss_pred CccchHHHHHHHHHHHHhhCCccchhHHHHH--HHHHHHHHHhccccC--CCcCCCCccc-hhhHHHHHHHHHHH
Q 028222 98 DYVECTASALKAMTLFQKLYPKHKKNEVNNF--ITNGVKFTEDSQKLD--GSWYGTWGVC-FIYSTWWAISGLVA 167 (212)
Q Consensus 98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~--i~ra~~~L~~~Q~~d--G~w~g~~~~~-~~~~T~~al~aL~~ 167 (212)
.-.|.++..+.+|..+.+.. ......+.+. |++.++|+.+.-+.. |-|....+.. +++.++.+..||.+
T Consensus 123 ~Q~D~~gl~l~~l~~~~~~g-~~~~~~~~~~~~I~~~~~yi~~~w~~pd~dlWEe~~g~~~f~~S~~~~~~AL~~ 196 (448)
T PF00723_consen 123 PQNDGPGLRLLALWQYIDSG-LQIIYTYWEVSFIKNDLDYIERNWREPDFDLWEERNGIHFFTASSAMQWAALLR 196 (448)
T ss_dssp -BTHHHHHHHHHHHHHHHTT-HHHHHTHHHHHTHHHHHHHHHHHTTSBEE-TTSS-EEEEHH--HHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHcC-CCcccccchhHHHHHHHHHHHHHcCCcCCccccccCCCCccchhHHHHHHHHHH
Confidence 34577999999998874321 1111223445 899999998875443 4442222222 22255555556644
No 115
>PLN02909 Endoglucanase
Probab=33.23 E-value=44 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHhcccCCCcc
Q 028222 174 NCLAIRKATDFLLNIQCDDGGW 195 (212)
Q Consensus 174 ~~~~i~~a~~~Ll~~Q~~dGgw 195 (212)
....++-+++||+++|..+|++
T Consensus 122 ~ldeikw~~D~llk~~~~~~~~ 143 (486)
T PLN02909 122 VRAAIRWGTDYFLKAASRKNRL 143 (486)
T ss_pred HHHHHHHHHHHHHHhccCCCeE
Confidence 4667888999999999887754
No 116
>PLN00119 endoglucanase
Probab=32.02 E-value=3.2e+02 Score=25.26 Aligned_cols=90 Identities=9% Similarity=0.134 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHhcccCCCceeecCCC---CChhhhhhcCcccccch---hhccc--CccchHHHHHHHHHHHHhhCCc
Q 028222 48 EPERFYDAANFMLYIQSKTGGITGWEPA---GAPSWIELLNPIEFLDE---VIIEH--DYVECTASALKAMTLFQKLYPK 119 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~---~~~~~~~~l~~~e~~~~---~~~d~--~~~~~Ta~al~aL~~~~~~~~~ 119 (212)
..+.++=.+|||+++|.+++.+-.-.++ .+..| ..|.+.-.. ..++. +..++++....+|+........
T Consensus 119 ~lde~kw~~Dyllk~~~~~~~~y~qVgdg~~DH~~W---~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk~ 195 (489)
T PLN00119 119 ALAALKWATDYLIKAHPQPNVLYGQVGDGNSDHACW---MRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFAP 195 (489)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeccCCCccccc---CChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHccc
Confidence 3567888999999999887776422221 11122 111111000 01221 1223444444445444333222
Q ss_pred c---chhHHHHHHHHHHHHHHhcc
Q 028222 120 H---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 120 ~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
. ...++..+.+++.+|..+..
T Consensus 196 ~D~~yA~~lL~~Ak~~y~fA~~~~ 219 (489)
T PLN00119 196 SDPAYASILIGHAKDLFEFAKAHP 219 (489)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 22456677788899998864
No 117
>PRK13621 psbV cytochrome c-550; Provisional
Probab=31.87 E-value=1.1e+02 Score=24.08 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCcC------------CCCcHHHHHHHHHHHHhcccCCCceee
Q 028222 26 SESFVCCLHLSTMPPEIVG------------EKMEPERFYDAANFMLYIQSKTGGITG 71 (212)
Q Consensus 26 a~~l~al~~~~~~~~~~~~------------~~~~~~~i~~av~~Ll~~Q~~dGgw~~ 71 (212)
-..+.+|..+.+.|-.+.| ...+++.++..+.||+.+=.-.++|+.
T Consensus 106 rd~I~~LV~~iknPms~kg~~~~~~~~mps~~~LSdeEL~aIAaYLL~qA~~~~~Wg~ 163 (170)
T PRK13621 106 RDNIAALVAYQRDPMSYDGSEESYGCRQVPEDWMTDEELQNLAAFILRAAQKAPGWGT 163 (170)
T ss_pred hHHHHHHHHHhhCCCCCCcccccccccCCccCCCCHHHHHHHHHHHHhhhhhccCCCC
Confidence 4455666666555543322 347889999999999987555779984
No 118
>PLN02175 endoglucanase
Probab=31.36 E-value=3.4e+02 Score=25.13 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHhhCCcc---chhHHHHHHHHHHHHHHhcc
Q 028222 101 ECTASALKAMTLFQKLYPKH---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
++|+.+..+|+......... ...++..+.+++.+|..+..
T Consensus 169 d~aae~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~ 211 (484)
T PLN02175 169 DVAAETAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYR 211 (484)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 45666566666544333222 12456677788899998865
No 119
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.18 E-value=3.7e+02 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHHHHHHhcccCCCcee
Q 028222 44 GEKMEPERFYDAANFMLYIQSKTGGIT 70 (212)
Q Consensus 44 ~~~~~~~~i~~av~~Ll~~Q~~dGgw~ 70 (212)
|.+.+.+.++..++-|.+.-..| ||.
T Consensus 169 G~~~d~~~i~~~l~~~e~~Y~Gd-GWY 194 (361)
T PF10022_consen 169 GEEYDEERIDYDLERIEEWYLGD-GWY 194 (361)
T ss_pred CCCCcHHHHHHHHHHHHHHhccC-Ccc
Confidence 55677899999999999988777 564
No 120
>PLN02171 endoglucanase
Probab=31.12 E-value=2.9e+02 Score=26.50 Aligned_cols=90 Identities=10% Similarity=0.168 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHhcccCCCceeecCCC---CChhhhhhcCcccccch---hhcccCc--cchHHHHHHHHHHHHhhCCc
Q 028222 48 EPERFYDAANFMLYIQSKTGGITGWEPA---GAPSWIELLNPIEFLDE---VIIEHDY--VECTASALKAMTLFQKLYPK 119 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~---~~~~~~~~l~~~e~~~~---~~~d~~~--~~~Ta~al~aL~~~~~~~~~ 119 (212)
..+.++=.+|||+++|.++|.+-.-.++ .+..| ..|.+.-.. ..++++. .++++....+|+........
T Consensus 118 ~Ldeikw~~Dyllk~~~~~~~~y~qVgdg~~DH~~W---~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~ 194 (629)
T PLN02171 118 AMDAVKWGTDYFIKAHPEPNVLYGEVGDGDTDHYCW---QRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRR 194 (629)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeCCCCccccCc---CChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhccc
Confidence 3467888999999999877766422221 11122 112110000 1123222 24455555555544333222
Q ss_pred c---chhHHHHHHHHHHHHHHhcc
Q 028222 120 H---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 120 ~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
. ...++..+.+++.+|..+..
T Consensus 195 ~D~~YA~~lL~~Ak~ly~fA~~~~ 218 (629)
T PLN02171 195 SNPGYANELLTHAKQLFDFADKYR 218 (629)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 22456677788899998864
No 121
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=30.25 E-value=1e+02 Score=17.21 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=13.4
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHH
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFL 185 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~L 185 (212)
.+..||...+.. +++|++||
T Consensus 18 ~~~~AL~~~~~n------ve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGN------VERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTS------HHHHHHHH
T ss_pred HHHHHHHHcCCC------HHHHHHhC
Confidence 466777766543 77777776
No 122
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=28.84 E-value=3.4e+02 Score=23.77 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=73.2
Q ss_pred CCccHHHHHHHHHHhhcCCCCC-cCCCCcHHHHHHHHHHHHhcccCC---CceeecCCCCChhhhhhcCcccccchhhcc
Q 028222 21 VSDCSSESFVCCLHLSTMPPEI-VGEKMEPERFYDAANFMLYIQSKT---GGITGWEPAGAPSWIELLNPIEFLDEVIIE 96 (212)
Q Consensus 21 ~~d~Ta~~l~al~~~~~~~~~~-~~~~~~~~~i~~av~~Ll~~Q~~d---Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~d 96 (212)
-.||.+-..++++.+.+.-... ...+..-+..++..+++.+.-+++ ||.......... ...+.
T Consensus 86 ~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~--------~~~~K----- 152 (370)
T PF03663_consen 86 YYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNS--------GYDYK----- 152 (370)
T ss_dssp BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----T--------EEEEE-----
T ss_pred ccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCC--------CCCcc-----
Confidence 5789998888888865421000 011134466777778887655443 665422100000 00010
Q ss_pred cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHh--ccccC-CCcCCCC---c-------cchhhHHHHHHH
Q 028222 97 HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTED--SQKLD-GSWYGTW---G-------VCFIYSTWWAIS 163 (212)
Q Consensus 97 ~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~--~Q~~d-G~w~g~~---~-------~~~~~~T~~al~ 163 (212)
..-.++.++...+++.... ..+.+.+..+|..+|+.+ ..+++ |-..... + ...+|..+..|.
T Consensus 153 --na~sN~~~~~laarL~~~t---~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~ 227 (370)
T PF03663_consen 153 --NAISNGPAAQLAARLYRIT---GDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLG 227 (370)
T ss_dssp --EHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHH
Confidence 1113554444444444332 223467788999999999 34343 5543211 1 124677887888
Q ss_pred HHHHcCcCC----CChHHHHHHHHHHHhcccCCC
Q 028222 164 GLVAAEKTY----SNCLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 164 aL~~~g~~~----~~~~~i~~a~~~Ll~~Q~~dG 193 (212)
++..+-..- .....+++.++..++..-.++
T Consensus 228 a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~ 261 (370)
T PF03663_consen 228 AAAYLYNATNDEQTYLDRAEKLADAAINHFFDNG 261 (370)
T ss_dssp HHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 887653211 123445555566655533333
No 123
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=27.05 E-value=1.3e+02 Score=24.04 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCC---------CcCCCCc----cchhhHHHHHHHHHHH
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDG---------SWYGTWG----VCFIYSTWWAISGLVA 167 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG---------~w~g~~~----~~~~~~T~~al~aL~~ 167 (212)
++-+.++..|.++..... ++++.++.+|+++.+.-.-.+.| -|+.+.- .....+-.++|.+|..
T Consensus 30 maQG~a~s~l~RAy~~t~---d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd 106 (189)
T PF06662_consen 30 MAQGQAISVLARAYQLTG---DEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYD 106 (189)
T ss_pred HHHHHHHHHHHHHHHhHC---CHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHH
Confidence 446667888887765432 35567788888877655443333 1211111 0112456678888876
Q ss_pred cCcCC---CChHHHHHHHHHHHhccc--CCCcccc
Q 028222 168 AEKTY---SNCLAIRKATDFLLNIQC--DDGGWGE 197 (212)
Q Consensus 168 ~g~~~---~~~~~i~~a~~~Ll~~Q~--~dGgw~~ 197 (212)
..... ......+++++-|+..-. +.|+|..
T Consensus 107 ~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~ 141 (189)
T PF06662_consen 107 YYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSR 141 (189)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 53221 135566778877766543 3566654
No 124
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=26.39 E-value=13 Score=19.94 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=6.7
Q ss_pred HHhcccCCCcee
Q 028222 59 MLYIQSKTGGIT 70 (212)
Q Consensus 59 Ll~~Q~~dGgw~ 70 (212)
|...|.+||.|.
T Consensus 5 I~~s~RpDGt~R 16 (27)
T PF09282_consen 5 IPASQRPDGTWR 16 (27)
T ss_dssp E--EE-TTS-EE
T ss_pred cCcccCCCCCcc
Confidence 456789999997
No 125
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=26.36 E-value=88 Score=17.23 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=13.5
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHH
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLL 186 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll 186 (212)
.++.||...+.+ +++|++||+
T Consensus 17 ~a~~aL~~~~~d------~~~A~~~L~ 37 (37)
T smart00165 17 EALKALRAANGN------VERAAEYLL 37 (37)
T ss_pred HHHHHHHHhCCC------HHHHHHHHC
Confidence 466667666542 777778773
No 126
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=26.09 E-value=1.1e+02 Score=23.39 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccccCCC-cCCCCccchhhHHHHHHHHHHHcCcCC
Q 028222 129 ITNGVKFTEDSQKLDGS-WYGTWGVCFIYSTWWAISGLVAAEKTY 172 (212)
Q Consensus 129 i~ra~~~L~~~Q~~dG~-w~g~~~~~~~~~T~~al~aL~~~g~~~ 172 (212)
++++++|+.+++..=+- -..+++........++..||..+|...
T Consensus 2 ie~~I~w~~~r~~~v~YSm~~R~G~~s~DCSs~V~~ALr~aG~~~ 46 (145)
T PF05382_consen 2 IEKAINWMEARKGKVTYSMDSRNGPDSYDCSSFVYQALRAAGFKI 46 (145)
T ss_pred HHHHHHHHHHhcCCceEhhhhcCCCCcCchHHHHHHHHHHcCCCC
Confidence 67889999888754220 012444443466778889999999864
No 127
>PLN02266 endoglucanase
Probab=26.09 E-value=87 Score=29.07 Aligned_cols=21 Identities=38% Similarity=0.333 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhcccCCCcc
Q 028222 175 CLAIRKATDFLLNIQCDDGGW 195 (212)
Q Consensus 175 ~~~i~~a~~~Ll~~Q~~dGgw 195 (212)
...++-+++||+++|..+|++
T Consensus 133 Ldelkw~~D~llk~~~~~~~v 153 (510)
T PLN02266 133 KDAIRWATDYLLKATAHPDTI 153 (510)
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 567889999999999877754
No 128
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=25.95 E-value=3.8e+02 Score=22.20 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHH
Q 028222 25 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTA 104 (212)
Q Consensus 25 Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta 104 (212)
.+-.+.+|..+.+.- ..+...+.+.+.+++|...+..+.....+...... ......-.+| .+
T Consensus 101 ~aG~~~~ll~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~g~~HG-----------~~ 162 (343)
T cd04434 101 LAGLLLALLLLYKTF----GEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPE---GRVNLGLAHG-----------LA 162 (343)
T ss_pred hHHHHHHHHHHHHhc----CCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccC---Cccccchhhh-----------hH
Confidence 355556666554321 23456788999999999876654322211100000 0000000011 22
Q ss_pred HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCC
Q 028222 105 SALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGS 145 (212)
Q Consensus 105 ~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~ 145 (212)
-++.+|..+.... ..+.+...+++++.++.+.+.++++
T Consensus 163 Gi~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (343)
T cd04434 163 GILLALLLLYKKT---VDKSLEALIKALLKYERRLQDDSGG 200 (343)
T ss_pred HHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHccCCCCC
Confidence 3455555554432 2244667788888888888776654
No 129
>PLN02171 endoglucanase
Probab=25.16 E-value=5.3e+02 Score=24.74 Aligned_cols=24 Identities=4% Similarity=0.043 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHhccccCCCc
Q 028222 123 NEVNNFITNGVKFTEDSQKLDGSW 146 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~~dG~w 146 (212)
+.+.+.++=+++||+++|.+++.+
T Consensus 116 ~~~Ldeikw~~Dyllk~~~~~~~~ 139 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHPEPNVL 139 (629)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeE
Confidence 457788999999999999776544
No 130
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.70 E-value=6.2e+02 Score=23.78 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCC--hhhhhhcCcccccchhhcccCccc
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGA--PSWIELLNPIEFLDEVIIEHDYVE 101 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~--~~~~~~l~~~e~~~~~~~d~~~~~ 101 (212)
+-++-|.+.+..-.. .+++.-++.+++.|+-+.+.|..||--++|..... ..|.+.. +--...
T Consensus 67 dlgkwlea~A~~l~~----~~dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr-----------~~HelY 131 (589)
T COG3533 67 DLGKWLEAAAYSLAN----KGDPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLR-----------PNHELY 131 (589)
T ss_pred cHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccc-----------cchHHH
Confidence 456777766653211 24566688999999999999999986665432111 0111110 011133
Q ss_pred hHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 102 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 102 ~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
+-++.+.++..+-.... +..+.+.+.|-.+|+.+.-.+.
T Consensus 132 ~aghLieg~va~~qaTG---kr~lldV~~rlADhi~tvfgp~ 170 (589)
T COG3533 132 CAGHLIEGGVAAHQATG---KRRLLDVVCRLADHIATVFGPE 170 (589)
T ss_pred HhHHHHhhhhHHHHhhC---cchHHHHHHHHHHhhhhhcCcc
Confidence 45566676665543322 2345678899999999887665
No 131
>PLN02420 endoglucanase
Probab=23.17 E-value=6.2e+02 Score=23.66 Aligned_cols=92 Identities=8% Similarity=0.085 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHHhcccCCCceeecCCC---CChhhhhhcCcccccch---hhccc--CccchHHHHHHHHHHHHhhC
Q 028222 46 KMEPERFYDAANFMLYIQSKTGGITGWEPA---GAPSWIELLNPIEFLDE---VIIEH--DYVECTASALKAMTLFQKLY 117 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~---~~~~~~~~l~~~e~~~~---~~~d~--~~~~~Ta~al~aL~~~~~~~ 117 (212)
+...+.++=.+|||+++|..++.+-.-.++ .+..| .+|.+.-.. ..++. +..++++....+|+......
T Consensus 127 ~d~Ldeikw~lD~llk~~~~~~~~~~qvGdg~~DH~~w---~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vf 203 (525)
T PLN02420 127 SHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCW---QRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVF 203 (525)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCceEEeeCCCCcccccc---cChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 344577888999999999876655311111 11111 111110000 11221 22344554444555443333
Q ss_pred Ccc---chhHHHHHHHHHHHHHHhcc
Q 028222 118 PKH---KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 118 ~~~---~~~~i~~~i~ra~~~L~~~Q 140 (212)
... ...++..+.+++.+|..+.+
T Consensus 204 k~~D~~YA~~~L~~Ak~ly~fA~~~~ 229 (525)
T PLN02420 204 RSTNPHYSHLLLHHAQQLFEFGDKYR 229 (525)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 222 23456667778888888654
No 132
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=22.36 E-value=1.5e+02 Score=25.50 Aligned_cols=46 Identities=7% Similarity=0.106 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHH
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMT 111 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~ 111 (212)
+....++.+++||...+..|-.|. +..+++|+...+.|..+..-++
T Consensus 81 ri~~mldeav~~le~ry~~~~~F~-------------------~eiiVvddgs~d~T~~~a~k~s 126 (323)
T KOG2977|consen 81 RIGAMLDEAVDYLEKRYLSDKSFT-------------------YEIIVVDDGSTDSTVEVALKFS 126 (323)
T ss_pred chHHHHHHHHHHHHHHhccCCCCc-------------------eeEEEeCCCCchhHHHHHHHHH
Confidence 557789999999999998888776 2345667778888887776666
No 133
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=3.8e+02 Score=25.07 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHhccccCCC---cCC------CCc----cchhhHHHHHHHHHHHc----CcCCCChHHHHHHHHH
Q 028222 122 KNEVNNFITNGVKFTEDSQKLDGS---WYG------TWG----VCFIYSTWWAISGLVAA----EKTYSNCLAIRKATDF 184 (212)
Q Consensus 122 ~~~i~~~i~ra~~~L~~~Q~~dG~---w~g------~~~----~~~~~~T~~al~aL~~~----g~~~~~~~~i~~a~~~ 184 (212)
+++++..+++.++=+.+.|.+||- |+. +|+ ....|+-..-+.++.++ |... .-.++.|-.+|
T Consensus 84 dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~-lldV~~rlADh 162 (589)
T COG3533 84 DPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQATGKRR-LLDVVCRLADH 162 (589)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHhhCcch-HHHHHHHHHHh
Confidence 467889999999999999999974 321 232 12345544444444432 4432 45677888888
Q ss_pred HHhcc
Q 028222 185 LLNIQ 189 (212)
Q Consensus 185 Ll~~Q 189 (212)
|.+.-
T Consensus 163 i~tvf 167 (589)
T COG3533 163 IATVF 167 (589)
T ss_pred hhhhc
Confidence 87754
No 134
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.31 E-value=1.2e+02 Score=20.63 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcccCCCceeecC
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWE 73 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~ 73 (212)
+.|+.||+||++--...-||--++
T Consensus 56 eIiEnAVefiLrSMtR~tgF~E~~ 79 (88)
T PF15144_consen 56 EIIENAVEFILRSMTRSTGFMEFE 79 (88)
T ss_pred HHHHHHHHHHHHHhhcccCceecC
Confidence 679999999998888888887554
No 135
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=20.82 E-value=6.2e+02 Score=22.72 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCCCceeecCCCCChhhhhhcCcccccchhhccc-Cccc
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH-DYVE 101 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~-~~~~ 101 (212)
+++..+.+.......- -++.-.+.+..++.|+.+. .+++|||..... +.. .++|. -+..
T Consensus 56 ~~~Rqvy~fA~A~~~g----~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~-~dg--------------~~~Dat~d~Y 116 (388)
T COG2942 56 VQARQVYCFAVAGLLG----WRGPWLDAVAHGIAYLARVGRDPEGGWYFALD-NDG--------------GPVDATKDLY 116 (388)
T ss_pred eehhHHHHHHHHHHhc----CCccHHHHHHhHHHHHHhcCcCCCCCeEEEec-CCC--------------CcccccHhHH
Confidence 5677787777754321 0223578999999999955 678999973322 111 11221 2344
Q ss_pred hHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc
Q 028222 102 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 102 ~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q 140 (212)
.-+.||++++.+....+ ++..+.+..+.+.|...-
T Consensus 117 ~haFallA~A~~a~a~~----~~a~~~~~~a~~~l~~~~ 151 (388)
T COG2942 117 GHAFALLAAAHAATAGP----PRADELLDEALDVLERRF 151 (388)
T ss_pred HHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHH
Confidence 56778999988765433 223456666766665554
Done!