Query 028222
Match_columns 212
No_of_seqs 155 out of 1368
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 1.3E-36 4.4E-41 284.7 19.0 207 1-208 433-642 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 1.1E-31 3.7E-36 248.2 14.6 190 1-207 354-545 (631)
3 1r76_A Pectate lyase; A-helica 99.9 1.2E-25 4.2E-30 195.0 10.4 163 18-196 144-334 (408)
4 1gxm_A Pectate lyase; mechanis 99.9 1.5E-25 5.1E-30 189.7 5.1 168 4-190 44-251 (332)
5 2sqc_A Squalene-hopene cyclase 99.9 4.8E-23 1.6E-27 190.5 14.8 168 3-209 410-608 (631)
6 2h6f_B Protein farnesyltransfe 99.9 8.8E-24 3E-28 187.1 8.9 165 4-208 87-252 (437)
7 3q7a_B Farnesyltransferase bet 99.9 6.2E-22 2.1E-26 176.7 13.7 131 46-197 105-236 (520)
8 1n4q_B Geranyltransferase type 99.9 1.3E-21 4.3E-26 170.3 10.0 144 52-208 69-223 (377)
9 3dss_B Geranylgeranyl transfer 99.9 2.2E-21 7.5E-26 166.4 11.2 165 3-209 78-243 (331)
10 3dss_B Geranylgeranyl transfer 99.8 6.6E-21 2.3E-25 163.5 10.5 165 3-209 126-292 (331)
11 1w6k_A Lanosterol synthase; cy 99.8 2.2E-20 7.6E-25 174.9 13.7 170 3-200 493-692 (732)
12 2h6f_B Protein farnesyltransfe 99.8 1.1E-20 3.9E-25 167.2 9.6 167 4-209 134-302 (437)
13 1qqf_A Protein (complement C3D 99.8 1.1E-17 3.8E-22 139.9 15.7 173 4-198 51-260 (277)
14 2wy7_A Complement C3D fragment 99.7 7.7E-17 2.6E-21 136.9 17.0 173 4-198 67-276 (310)
15 1n4q_B Geranyltransferase type 99.7 4.1E-17 1.4E-21 141.9 11.2 153 19-209 119-274 (377)
16 1hzf_A Complement factor C4A; 99.7 4.7E-16 1.6E-20 135.1 16.9 176 3-198 103-346 (367)
17 3q7a_B Farnesyltransferase bet 99.6 1.1E-15 3.7E-20 136.5 13.2 176 3-208 121-327 (520)
18 1hzf_A Complement factor C4A; 99.6 2.4E-16 8.2E-21 136.9 5.6 151 6-188 50-226 (367)
19 1qqf_A Protein (complement C3D 99.6 3.7E-15 1.3E-19 124.5 11.7 116 49-191 37-173 (277)
20 2wy7_A Complement C3D fragment 99.6 5.5E-15 1.9E-19 125.4 11.7 115 50-191 54-189 (310)
21 1gxm_A Pectate lyase; mechanis 99.5 5.7E-14 2E-18 118.9 9.2 131 55-196 36-189 (332)
22 1r76_A Pectate lyase; A-helica 99.5 1.7E-13 5.7E-18 119.1 11.0 146 50-196 81-266 (408)
23 2hr0_B Complement C3 alpha' ch 99.5 9.5E-13 3.2E-17 126.2 15.4 172 4-197 312-520 (915)
24 4acq_A Alpha-2-macroglobulin; 99.3 4.4E-12 1.5E-16 126.4 12.2 171 3-198 995-1228(1451)
25 3dra_B Geranylgeranyltransfera 99.3 3.2E-12 1.1E-16 111.2 9.0 142 48-208 51-223 (390)
26 2pmv_A Gastric intrinsic facto 99.3 1.5E-11 5.3E-16 106.7 11.0 125 26-197 118-246 (399)
27 2pn5_A TEP1R, thioester-contai 99.3 1.5E-11 5.1E-16 121.9 11.8 166 4-197 885-1087(1325)
28 4acq_A Alpha-2-macroglobulin; 99.2 3.6E-11 1.2E-15 119.9 12.5 116 50-188 983-1108(1451)
29 2bb6_A TCII, TC II, transcobal 99.2 1.2E-10 4.2E-15 101.6 14.1 92 99-197 177-270 (414)
30 2pn5_A TEP1R, thioester-contai 99.2 2.6E-11 8.7E-16 120.2 10.8 124 50-198 872-1007(1325)
31 3dra_B Geranylgeranyltransfera 99.2 5.7E-11 1.9E-15 103.4 9.2 129 51-209 192-351 (390)
32 2hr0_B Complement C3 alpha' ch 99.2 1.2E-10 4.1E-15 111.7 10.8 116 50-191 299-434 (915)
33 4fxk_B Complement C4-A alpha c 99.0 1.3E-08 4.5E-13 95.8 16.4 176 3-198 380-623 (767)
34 2bb6_A TCII, TC II, transcobal 98.8 5.3E-09 1.8E-13 91.3 6.3 107 19-169 175-285 (414)
35 2b39_A C3; thioester, immune d 98.7 4.2E-07 1.5E-11 92.0 15.9 174 3-198 1058-1268(1661)
36 2pmv_A Gastric intrinsic facto 98.6 4.7E-08 1.6E-12 84.9 5.3 110 19-170 149-262 (399)
37 3prx_B Cobra venom factor; imm 98.6 7.3E-09 2.5E-13 104.2 0.0 175 4-199 1043-1251(1642)
38 3cu7_A Complement C5; Mg domai 98.5 2.2E-06 7.6E-11 86.8 15.8 171 4-198 1060-1287(1676)
39 4fxk_B Complement C4-A alpha c 98.4 1.6E-06 5.4E-11 81.6 11.5 112 51-188 369-503 (767)
40 2b39_A C3; thioester, immune d 98.3 3.7E-06 1.3E-10 85.1 12.6 112 51-188 1047-1178(1661)
41 3cu7_A Complement C5; Mg domai 98.2 4.4E-06 1.5E-10 84.7 11.1 112 51-188 1048-1178(1676)
42 3prx_B Cobra venom factor; imm 98.1 5.2E-07 1.8E-11 90.9 0.0 114 50-188 1030-1162(1642)
43 3k11_A Putative glycosyl hydro 96.9 0.015 5.2E-07 51.3 13.3 156 21-199 143-317 (445)
44 3pya_A ENT-copalyl diphosphate 96.7 0.0017 5.8E-08 60.6 5.6 82 19-140 31-112 (727)
45 3s9v_A Abietadiene synthase, c 96.6 0.0024 8.3E-08 60.1 5.6 60 53-140 77-136 (785)
46 3p5p_A Taxadiene synthase; cla 96.6 0.0025 8.5E-08 59.9 5.6 61 52-140 55-115 (764)
47 3sdr_A Alpha-bisabolene syntha 96.6 0.0025 8.7E-08 60.2 5.6 61 52-140 103-163 (817)
48 3pya_A ENT-copalyl diphosphate 96.5 0.0047 1.6E-07 57.6 6.9 57 129-188 52-111 (727)
49 3s9v_A Abietadiene synthase, c 96.5 0.0039 1.4E-07 58.7 6.4 59 128-189 75-136 (785)
50 3p5p_A Taxadiene synthase; cla 96.5 0.0045 1.6E-07 58.1 6.7 59 128-189 54-115 (764)
51 3sdr_A Alpha-bisabolene syntha 96.4 0.0047 1.6E-07 58.4 6.7 59 128-189 102-163 (817)
52 3pmm_A Putative cytoplasmic pr 96.2 0.036 1.2E-06 47.8 10.7 122 25-168 235-377 (382)
53 3k11_A Putative glycosyl hydro 95.5 0.18 6.1E-06 44.4 11.9 94 103-196 268-372 (445)
54 2gz6_A N-acetyl-D-glucosamine 95.3 0.11 3.6E-06 44.3 10.0 127 52-195 17-158 (388)
55 2gz6_A N-acetyl-D-glucosamine 94.8 0.21 7.3E-06 42.4 10.3 162 7-188 32-207 (388)
56 1nc5_A Hypothetical protein YT 94.5 0.098 3.3E-06 44.8 7.5 101 26-145 216-323 (373)
57 1nc5_A Hypothetical protein YT 94.2 1.7 5.8E-05 36.9 14.5 92 103-194 215-323 (373)
58 3pmm_A Putative cytoplasmic pr 93.7 0.35 1.2E-05 41.6 9.3 96 103-198 235-342 (382)
59 1ulv_A Glucodextranase; GH fam 93.4 0.68 2.3E-05 44.9 11.6 119 17-167 326-449 (1020)
60 3gt5_A N-acetylglucosamine 2-e 93.0 0.86 3E-05 39.1 10.8 132 49-196 12-157 (402)
61 2fba_A Glucoamylase Glu1; (alp 92.1 0.89 3E-05 40.5 9.8 139 12-168 58-230 (492)
62 1fp3_A N-acyl-D-glucosamine 2- 91.6 1.6 5.4E-05 37.2 10.6 131 50-195 17-166 (402)
63 2vn4_A Glucoamylase; hydrolase 91.4 0.47 1.6E-05 43.3 7.4 138 12-167 42-198 (599)
64 1lf6_A Glucoamylase; (alpha/al 90.8 0.54 1.8E-05 43.5 7.3 116 18-167 338-457 (684)
65 1lf6_A Glucoamylase; (alpha/al 90.6 1.4 4.8E-05 40.7 9.9 130 48-197 294-439 (684)
66 3gt5_A N-acetylglucosamine 2-e 86.8 3 0.0001 35.7 8.8 141 24-188 53-208 (402)
67 1wgn_A UBAP1, ubiquitin associ 86.1 0.8 2.7E-05 28.8 3.4 29 158-192 33-61 (63)
68 3h7l_A Endoglucanase; dehydrog 85.4 6.3 0.00021 35.8 10.4 87 49-140 193-291 (586)
69 2dna_A Unnamed protein product 84.9 1.1 3.7E-05 28.8 3.7 28 160-193 36-63 (67)
70 1gai_A Glucoamylase-471; hydro 84.2 2.5 8.7E-05 37.3 7.1 138 12-167 43-197 (472)
71 3k7x_A LIN0763 protein; Q92DQ0 82.7 7.7 0.00026 32.6 9.4 146 22-193 91-253 (349)
72 3e6u_A LANC-like protein 1; al 82.7 12 0.00041 32.1 10.8 44 25-72 233-276 (411)
73 2zbl_A Putative isomerase; N-a 77.1 26 0.00087 29.9 11.0 93 101-198 51-157 (421)
74 3h7l_A Endoglucanase; dehydrog 76.1 11 0.00037 34.3 8.5 87 103-189 164-291 (586)
75 2ahf_A Unsaturated glucuronyl 75.4 12 0.00042 31.8 8.4 133 44-194 105-262 (377)
76 1vej_A Riken cDNA 4931431F19; 75.1 3.5 0.00012 26.8 3.8 28 160-193 46-73 (74)
77 3eu8_A Putative glucoamylase; 74.6 7 0.00024 34.0 6.7 80 26-115 68-147 (430)
78 2zbl_A Putative isomerase; N-a 74.6 37 0.0013 28.9 11.4 142 24-189 52-208 (421)
79 1wgn_A UBAP1, ubiquitin associ 73.5 3.1 0.00011 26.0 3.0 17 128-144 46-62 (63)
80 1vg5_A RSGI RUH-014, rhomboid 68.7 5.6 0.00019 25.8 3.6 28 159-192 44-71 (73)
81 2cpw_A CBL-interacting protein 68.5 6 0.00021 24.8 3.7 28 159-191 34-61 (64)
82 2dah_A Ubiquilin-3; UBA domain 68.5 5.5 0.00019 24.1 3.3 26 160-191 26-51 (54)
83 2zzr_A Unsaturated glucuronyl 66.6 45 0.0015 28.6 10.0 133 44-194 131-287 (397)
84 1wiv_A UBP14, ubiquitin-specif 66.3 7.7 0.00026 25.0 3.9 28 158-191 43-70 (73)
85 2knz_A Ubiquilin-4; cytoplasm, 66.2 5.8 0.0002 23.8 3.1 25 159-189 27-51 (53)
86 1fp3_A N-acyl-D-glucosamine 2- 66.0 28 0.00097 29.2 8.6 124 5-147 33-167 (402)
87 1wji_A Tudor domain containing 65.2 7.1 0.00024 24.4 3.5 28 159-192 24-51 (63)
88 3qde_A Cellobiose phosphorylas 63.7 24 0.00081 33.2 8.3 98 24-144 361-472 (811)
89 2crn_A Ubash3A protein; compac 63.2 7 0.00024 24.5 3.2 29 158-191 23-51 (64)
90 1ulv_A Glucodextranase; GH fam 60.7 30 0.001 33.5 8.5 73 123-199 280-372 (1020)
91 2bwb_A Ubiquitin-like protein 59.7 7.7 0.00026 22.6 2.7 22 160-187 24-45 (46)
92 3rrs_A Cellobiose phosphorylas 59.2 44 0.0015 31.5 9.2 98 24-144 368-479 (822)
93 3gzk_A Cellulase; fold from GH 58.9 28 0.00095 31.1 7.5 94 46-141 188-286 (537)
94 3e6u_A LANC-like protein 1; al 58.2 20 0.00069 30.6 6.3 40 106-148 236-275 (411)
95 2vn4_A Glucoamylase; hydrolase 57.4 25 0.00084 31.9 7.0 91 102-198 54-181 (599)
96 2ahf_A Unsaturated glucuronyl 57.2 88 0.003 26.4 12.8 158 19-188 144-320 (377)
97 1wr1_B Ubiquitin-like protein 56.4 9.6 0.00033 23.4 2.9 23 160-188 34-56 (58)
98 1whc_A RSGI RUH-027, UBA/UBX 3 54.5 12 0.00041 23.4 3.1 28 159-191 24-51 (64)
99 1veg_A NEDD8 ultimate buster-1 54.2 11 0.00039 24.9 3.1 26 159-190 44-69 (83)
100 2ekk_A UBA domain from E3 ubiq 54.1 13 0.00046 21.4 3.2 23 159-188 24-46 (47)
101 2dag_A Ubiquitin carboxyl-term 53.8 12 0.0004 24.2 3.1 28 159-191 24-51 (74)
102 1ks8_A Endo-B-1,4-glucanase; c 53.7 46 0.0016 28.8 7.8 94 47-140 91-192 (433)
103 2jy5_A Ubiquilin-1; UBA, alter 53.5 9.8 0.00034 22.7 2.5 23 160-188 29-51 (52)
104 2g0d_A Nisin biosynthesis prot 52.6 1E+02 0.0035 25.8 11.5 26 123-148 226-254 (409)
105 2dai_A Ubadc1, ubiquitin assoc 52.2 17 0.00059 24.0 3.8 26 160-191 45-70 (83)
106 2dak_A Ubiquitin carboxyl-term 50.7 11 0.00036 23.4 2.4 27 159-191 24-50 (63)
107 2g3q_A Protein YBL047C; endocy 50.5 15 0.0005 20.7 2.9 23 160-188 20-42 (43)
108 3k7x_A LIN0763 protein; Q92DQ0 49.0 1.1E+02 0.0039 25.3 9.7 135 24-195 47-193 (349)
109 1vek_A UBP14, ubiquitin-specif 48.9 20 0.00068 23.7 3.7 28 159-191 44-71 (84)
110 1clc_A Endoglucanase CELD; EC: 48.7 43 0.0015 30.6 7.1 92 47-141 233-330 (639)
111 2okx_A Rhamnosidase B; alpha b 45.8 85 0.0029 29.9 9.0 80 49-146 594-674 (956)
112 4gl3_A Putative glucoamylase; 45.2 45 0.0015 28.9 6.3 81 26-116 58-140 (424)
113 3eu8_A Putative glucoamylase; 44.4 95 0.0032 26.9 8.2 88 100-189 64-170 (430)
114 3rrs_A Cellobiose phosphorylas 43.0 60 0.0021 30.5 7.3 67 127-193 382-479 (822)
115 1ify_A HHR23A, UV excision rep 40.3 19 0.00066 21.0 2.3 24 159-188 23-46 (49)
116 1dv0_A DNA repair protein HHR2 37.4 24 0.00081 20.5 2.4 27 158-190 18-44 (47)
117 2dkl_A Trinucleotide repeat co 37.2 36 0.0012 22.5 3.5 26 160-191 37-62 (85)
118 3qde_A Cellobiose phosphorylas 35.9 94 0.0032 29.1 7.4 67 127-193 375-472 (811)
119 1ut9_A Cellulose 1,4-beta-cell 35.5 64 0.0022 29.2 6.1 21 48-68 229-249 (609)
120 1ia6_A Cellulase CEL9M; cellul 35.5 1.2E+02 0.0042 26.1 7.7 95 47-141 93-196 (441)
121 2p0v_A Hypothetical protein BT 35.5 1.5E+02 0.005 26.2 8.1 46 99-144 178-225 (489)
122 2cwb_A Chimera of immunoglobul 33.4 34 0.0011 23.8 3.0 24 159-188 82-105 (108)
123 1q02_A Sequestosome 1; helical 32.8 43 0.0015 20.0 3.0 24 173-196 5-29 (52)
124 1wj7_A Hypothetical protein (R 32.4 47 0.0016 22.9 3.6 34 160-199 56-89 (104)
125 1v7w_A Chitobiose phosphorylas 31.9 45 0.0015 31.0 4.5 21 49-69 363-383 (807)
126 1ut9_A Cellulose 1,4-beta-cell 30.7 52 0.0018 29.8 4.6 19 175-193 230-248 (609)
127 1tf4_A T. fusca endo/EXO-cellu 28.7 1.8E+02 0.0061 26.2 7.8 94 47-141 92-194 (605)
128 2zzr_A Unsaturated glucuronyl 27.7 2.8E+02 0.0096 23.5 12.2 159 19-188 169-345 (397)
129 2cos_A Serine/threonine protei 26.4 89 0.0031 18.8 3.6 25 160-189 25-49 (54)
130 1z96_A DNA-damage, UBA-domain 23.3 65 0.0022 17.2 2.6 19 161-185 21-39 (40)
131 4ae4_A Ubiquitin-associated pr 22.5 72 0.0025 22.3 3.2 14 176-189 102-115 (118)
132 3c5t_B Exendin-4, exenatide; l 21.5 71 0.0024 16.9 2.2 16 175-190 8-23 (31)
133 2g0d_A Nisin biosynthesis prot 20.7 3.6E+02 0.012 22.3 11.6 26 46-71 226-254 (409)
134 3ren_A Glycosyl hydrolase, fam 20.0 1.4E+02 0.0047 25.1 4.9 37 159-197 285-327 (350)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=1.3e-36 Score=284.69 Aligned_cols=207 Identities=37% Similarity=0.793 Sum_probs=180.5
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
+||+.++|||+|+..+..+|++|+||.+|+||..+.+.++. .+..+.++.++++++||+++||+||||+.|++.+...|
T Consensus 433 ~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~ 511 (732)
T 1w6k_A 433 YYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHL 511 (732)
T ss_dssp GTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGG
T ss_pred cccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHH
Confidence 48999999999998888899999999999999998654321 13457789999999999999999999999999888999
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW 160 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~ 160 (212)
++.+++.+.|++..++++++++|+.+|.+|..++...+.++.+++.++++||++||++.|++||+|.+.|+.+++|+|++
T Consensus 512 l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~ 591 (732)
T 1w6k_A 512 LELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWF 591 (732)
T ss_dssp GGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHH
T ss_pred HhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHH
Confidence 99999999999888899999999999999999987666666566778999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCCCCh---HHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222 161 AISGLVAAEKTYSNC---LAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 161 al~aL~~~g~~~~~~---~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~ 208 (212)
++.||..+|...... +.++++++||+++|++||||+..+.++.+..|+
T Consensus 592 al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~ 642 (732)
T 1w6k_A 592 GLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV 642 (732)
T ss_dssp HHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCC
T ss_pred HHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccC
Confidence 999999999865333 799999999999999999999876554444443
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.97 E-value=1.1e-31 Score=248.22 Aligned_cols=190 Identities=23% Similarity=0.363 Sum_probs=159.5
Q ss_pred CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
++++.++|||+|+..++.+|++|+||.+|+||..+.. +. .+..++.+.++++||+++|++||||+.|+.++...+
T Consensus 354 ~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~-~~----~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~ 428 (631)
T 2sqc_A 354 KRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL-PD----ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDL 428 (631)
T ss_dssp TCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC-SC----HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSG
T ss_pred hcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCC-Cc----cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCcccc
Confidence 4678889999999999999999999999999988753 21 123567899999999999999999998877766666
Q ss_pred hhhcCcccccch--hhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHH
Q 028222 81 IELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYST 158 (212)
Q Consensus 81 ~~~l~~~e~~~~--~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T 158 (212)
++.++ |.+ ..+|++++++|+.+|.+|..++. +. ..+.++|+++||++.|++||+|++.|+.+++|.|
T Consensus 429 ~~~~~----F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--~~-----~~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~T 497 (631)
T 2sqc_A 429 PNHIP----FSDFGEVTDPPSEDVTAHVLECFGSFGY--DD-----AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGT 497 (631)
T ss_dssp GGGST----TCSSSCSSCCCBHHHHHHHHHHHHTTTC--CT-----TSHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHH
T ss_pred ccccc----cccCCcccCCCCchHHHHHHHHHHhcCC--Cc-----cHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHH
Confidence 66665 543 35678899999999999998753 21 1368999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLH 207 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y 207 (212)
++++.+|..+|... ..+.++++++||+++|++||||+..+.++.+..|
T Consensus 498 a~~l~aL~~~g~~~-~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~ 545 (631)
T 2sqc_A 498 GAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAY 545 (631)
T ss_dssp HHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGG
T ss_pred HHHHHHHHHhCCcc-cHHHHHHHHHHHHHhCcCCCCcCCcccccccccc
Confidence 99999999999764 6789999999999999999999987766554433
No 3
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.92 E-value=1.2e-25 Score=195.03 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=121.3
Q ss_pred CCCCCccHHHHHHHHHHhhcC-CCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcc
Q 028222 18 GLPVSDCSSESFVCCLHLSTM-PPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE 96 (212)
Q Consensus 18 ~~~~~d~Ta~~l~al~~~~~~-~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d 96 (212)
.++|.|+|+.+|++|..+... .+. ..+.+.+++.|+++||+.+|++||||+.|.+++ ..++..|| |++
T Consensus 144 ~T~DnddTa~vl~aL~rv~~~~t~~--~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~Ip----FnD---- 212 (408)
T 1r76_A 144 GTIDNDATVTEIRFLAQVVSQLAPE--EAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAIT----YND---- 212 (408)
T ss_dssp SBCGGGTTHHHHHHHHHHHHHSCGG--GCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEE----CGG----
T ss_pred CCCCCchHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCC----cCc----
Confidence 357899999999999996542 100 134678999999999999999999999999877 46777777 653
Q ss_pred cCccchHHHHHHHHHHHHhhCC------ccchhHHHHHHHHHHHHHHhcccc-CCCcCCCCccchhhHHHH---------
Q 028222 97 HDYVECTASALKAMTLFQKLYP------KHKKNEVNNFITNGVKFTEDSQKL-DGSWYGTWGVCFIYSTWW--------- 160 (212)
Q Consensus 97 ~~~~~~Ta~al~aL~~~~~~~~------~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g~~~~~~~~~T~~--------- 160 (212)
++|+.||..|..++.... ...+.+..++++||++||++.|.+ ||+|+ +|+..+.|+|..
T Consensus 213 ----Dvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~ 287 (408)
T 1r76_A 213 ----DALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEP 287 (408)
T ss_dssp ----GHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCC
T ss_pred ----HHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCC
Confidence 579999999988875211 111234668999999999999999 99998 998877776544
Q ss_pred ----------HHHHHHHcCcCC-CChHHHHHHHHHHHhcccCCCccc
Q 028222 161 ----------AISGLVAAEKTY-SNCLAIRKATDFLLNIQCDDGGWG 196 (212)
Q Consensus 161 ----------al~aL~~~g~~~-~~~~~i~~a~~~Ll~~Q~~dGgw~ 196 (212)
+|..|.....+. ...++|++|++||.++|++||+|-
T Consensus 288 psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 288 AALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp SCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred ccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 444455544321 124589999999999999999997
No 4
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.91 E-value=1.5e-25 Score=189.69 Aligned_cols=168 Identities=15% Similarity=0.215 Sum_probs=131.9
Q ss_pred CCCCCcccccc-C----------CCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec
Q 028222 4 HISKGGWTFSD-K----------DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW 72 (212)
Q Consensus 4 ~~~~Ggw~~~~-~----------~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~ 72 (212)
|++.|||.+.. + ...++|.|+|+.+|++|..+.... ..+...++++|+++||+++|.+||||+.|
T Consensus 44 Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqF 119 (332)
T 1gxm_A 44 QQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANFLVNSQYSTGALPQF 119 (332)
T ss_dssp CCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHCCTTSCCBSE
T ss_pred CcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 88999999521 1 233589999999999999865421 13467899999999999999999999999
Q ss_pred CCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccc--------hhHHHHHHHHHHHHHHhccccCC
Q 028222 73 EPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHK--------KNEVNNFITNGVKFTEDSQKLDG 144 (212)
Q Consensus 73 ~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~--------~~~i~~~i~ra~~~L~~~Q~~dG 144 (212)
.+.+ ..++..|| |++ ++|+.||..|..++...+.+. ..+..++++||++||++.|.+||
T Consensus 120 dpd~-~~Yl~~Ip----FnD--------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dg 186 (332)
T 1gxm_A 120 YPLK-GGYSDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQN 186 (332)
T ss_dssp ESCC-SGGGGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEET
T ss_pred CCCc-ccccccCC----cch--------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccC
Confidence 8876 55667777 653 579999999999864322120 14456899999999999999999
Q ss_pred CcCCCCccchhhHHHH----------HHHHHHHcCc-------CCCChH----HHHHHHHHHHhccc
Q 028222 145 SWYGTWGVCFIYSTWW----------AISGLVAAEK-------TYSNCL----AIRKATDFLLNIQC 190 (212)
Q Consensus 145 ~w~g~~~~~~~~~T~~----------al~aL~~~g~-------~~~~~~----~i~~a~~~Ll~~Q~ 190 (212)
+|.+.|+..+.|+|.. +|.++..+|+ +. ++ +|++|++||.++|+
T Consensus 187 gw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~--~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 187 GVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ--TAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp TEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC--CHHHHHHHHHHHHHHTCTTT
T ss_pred CCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhccc
Confidence 9999999999898877 6666666533 32 34 79999999999999
No 5
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.89 E-value=4.8e-23 Score=190.46 Aligned_cols=168 Identities=22% Similarity=0.401 Sum_probs=127.9
Q ss_pred CCCCCCccc-cccCCC----------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccC
Q 028222 3 RHISKGGWT-FSDKDH----------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK 65 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~~----------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~ 65 (212)
.|++.|||+ |..... ..|++|+|+.+|.+|..+.. +...+.++++++||+++|++
T Consensus 410 ~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~ 481 (631)
T 2sqc_A 410 MQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKP 481 (631)
T ss_dssp TCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCT
T ss_pred hcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCC
Confidence 478899996 432110 12788999999999988742 23467899999999999999
Q ss_pred CCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCC
Q 028222 66 TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGS 145 (212)
Q Consensus 66 dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~ 145 (212)
||||..... ..++..|+.++.+|..++.. . ..+.++|+++||++.|++||+
T Consensus 482 DGsw~g~wg----------------------~~~~y~Ta~~l~aL~~~g~~-~------~~~~i~rav~~L~s~Q~~DGg 532 (631)
T 2sqc_A 482 DGSWFGRWG----------------------VNYLYGTGAVVSALKAVGID-T------REPYIQKALDWVEQHQNPDGG 532 (631)
T ss_dssp TSCCCCSSB----------------------SSHHHHHHHHHHHHHHTTCC-T------TSHHHHHHHHHHHHTCCTTSC
T ss_pred CCCCCCCCC----------------------CCchHHHHHHHHHHHHhCCc-c------cHHHHHHHHHHHHHhCcCCCC
Confidence 999942111 11234699999999987532 1 136899999999999999999
Q ss_pred cCCC-----------CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCc---CCCCcccc
Q 028222 146 WYGT-----------WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS---CPNKLHMN 209 (212)
Q Consensus 146 w~g~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s---~~~~~y~~ 209 (212)
|... ++.+..+.|++||.+|..+|.. ..+.++++++||+++|++||||++...+ -+..+|+.
T Consensus 533 Wg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~ 608 (631)
T 2sqc_A 533 WGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLG 608 (631)
T ss_dssp CCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEE
T ss_pred cCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceee
Confidence 9432 2345667899999999999987 3688999999999999999999987765 34555553
No 6
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.89 E-value=8.8e-24 Score=187.09 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=124.0
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|+.+|||..-+.+..+ ..--+|.+|..+. .+..++.++++++||+++|++||||+.+..
T Consensus 87 q~~~gg~~a~D~~r~~----l~y~~l~aL~lLg--------~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~--------- 145 (437)
T 2h6f_B 87 RQLTDAYECLDASRPW----LCYWILHSLELLD--------EPIPQIVATDVCQFLELCQSPEGGFGGGPG--------- 145 (437)
T ss_dssp TEECGGGGGGTTCHHH----HHHHHHHHHHHTT--------CCCCHHHHHHHHHHHHHHBCTTSSBBSSTT---------
T ss_pred CCCCCCcccccCCCcc----HHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhCCCCCCcCCccC---------
Confidence 5678999964432211 1222455665553 235577899999999999999999997543
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al 162 (212)
+.+++..|+.||.+|..++.... . . ...++|+++||++.|++||||.+. |+..+++.|..|+
T Consensus 146 ------------~~~~i~~T~~Al~aL~~lg~~~~-~--~--~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~ 208 (437)
T 2h6f_B 146 ------------QYPHLAPTYAAVNALCIIGTEEA-Y--D--IINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAA 208 (437)
T ss_dssp ------------CCBCHHHHHHHHHHHHHHCCHHH-H--T--TSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHH
T ss_pred ------------CCcchhHHHHHHHHHHHhCCccc-c--c--chHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHH
Confidence 12456679999999999864210 0 0 124789999999999999999885 8888888999999
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~ 208 (212)
.+|..+|.. ..+.++|+++||+++|+.||||+..+..-+...||
T Consensus 209 ~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T 252 (437)
T 2h6f_B 209 SVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYT 252 (437)
T ss_dssp HHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHH
T ss_pred HHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHH
Confidence 999999875 46789999999999999999999987655544444
No 7
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.87 E-value=6.2e-22 Score=176.65 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=112.3
Q ss_pred CCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHH
Q 028222 46 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 125 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i 125 (212)
+...+..+++++||+++|++||||+.++.. .+.+++.+|..||++|..++..+++++.++|
T Consensus 105 ~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~-------------------~~~~hla~TysAV~aL~ilg~~~p~~~~~~I 165 (520)
T 3q7a_B 105 ALDQGTKDRVVSTLLHFLSPKGGFGGGPAN-------------------SQIPHLLPTYASVCSLAIAGNDSSTGGWKDL 165 (520)
T ss_dssp CCCHHHHHHHHHHHHTTBCTTSSBCSSCTT-------------------TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCCCCCCCCCCC-------------------CCCCcHHHHHHHHHHHHHhCccccchhhhhh
Confidence 355678899999999999999999965421 1356788999999999999876555555556
Q ss_pred HHHHHHHHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222 126 NNFITNGVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 126 ~~~i~ra~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
+..++++++||++.|++||+|.+ .|+..+++.|.+|+.+|..+|.. ..+.++++++||++||+.||||+.
T Consensus 166 d~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 166 AAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred hhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccC
Confidence 55588999999999999999988 59999999999999999999984 578999999999999999999998
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.85 E-value=1.3e-21 Score=170.30 Aligned_cols=144 Identities=14% Similarity=0.054 Sum_probs=112.6
Q ss_pred HHHHHHHHHhccc---------CCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccch
Q 028222 52 FYDAANFMLYIQS---------KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKK 122 (212)
Q Consensus 52 i~~av~~Ll~~Q~---------~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~ 122 (212)
.+++++||+++|+ ++|||+.++..+.+. ....++. .+..+|++++.+|..+|.+|..++...+.
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~---~~~~~d~~~v~~T~~Al~~L~~lg~~~~~--- 141 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPG---TAHPYDSGHIAMTYTGLSCLIILGDDLSR--- 141 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCC---CCCTTCCCCHHHHHHHHHHHHHTTCCSTT---
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhcccc---ccccCCCCCHHHHHHHHHHHHHhCcccch---
Confidence 6899999999999 689999887542221 0111111 13566889999999999999998643221
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcCC--CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222 123 NEVNNFITNGVKFTEDSQKLDGSWYG--TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 200 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g--~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~ 200 (212)
+ ..+|+++||++.|++||+|.+ .|+..+++.|.+|+.+|..+|.. ..+.++++++||++||+.||||+..+.
T Consensus 142 --i--d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~p~ 215 (377)
T 1n4q_B 142 --V--DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGAG 215 (377)
T ss_dssp --S--CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSSTT
T ss_pred --h--hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 1 247899999999999999998 69988899999999999999874 467899999999999999999999886
Q ss_pred cCCCCccc
Q 028222 201 SCPNKLHM 208 (212)
Q Consensus 201 s~~~~~y~ 208 (212)
.-+...||
T Consensus 216 ~ESh~g~T 223 (377)
T 1n4q_B 216 LESHGGST 223 (377)
T ss_dssp SCBCHHHH
T ss_pred CCCchhHH
Confidence 54444343
No 9
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.85 E-value=2.2e-21 Score=166.43 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=128.8
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
.|++.|||+.+. ...+..-.|..+|.+|..+... .+..++++++||+++|++||||......
T Consensus 78 ~Q~~dGGF~g~~--g~~~~l~~Ty~Al~~L~~l~~~---------~~id~~k~~~fL~~~Q~~DGsf~~~~~g------- 139 (331)
T 3dss_B 78 CQHECGGVSASI--GHDPHLLYTLSAVQILTLYDSI---------HVINVDKVVAYVQSLQKEDGSFAGDIWG------- 139 (331)
T ss_dssp TBCTTSCBBSST--TSCBCHHHHHHHHHHHHHTTCG---------GGSCHHHHHHHHHHTBCTTSCBBSSTTC-------
T ss_pred hcCCCCCcCCCC--CCCccHHHHHHHHHHHHHcCCc---------cHHHHHHHHHHHhccCCCCCCEecccCC-------
Confidence 478999999754 3467888999999999887431 1233799999999999999999842111
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA 161 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a 161 (212)
.+++..|+.++.+|..++... ...++|+++||++.|++||||.+.++ .++...|.+|
T Consensus 140 --------------e~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~a 197 (331)
T 3dss_B 140 --------------EIDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197 (331)
T ss_dssp --------------CBCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHH
T ss_pred --------------CCchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHH
Confidence 123445888888888876431 13589999999999999999987764 3456779999
Q ss_pred HHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
+.+|..+|... ...++++++||+++|++||||...+..-++..|++
T Consensus 198 l~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~ 243 (331)
T 3dss_B 198 TGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSW 243 (331)
T ss_dssp HHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHH
T ss_pred HHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHH
Confidence 99999998763 34589999999999999999999988888877764
No 10
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.84 E-value=6.6e-21 Score=163.46 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=124.9
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
.|.++|||.-.. ..-+++.-|-.++.+|..+... ....++++++||+++|++||||+..+..
T Consensus 126 ~Q~~DGsf~~~~--~ge~d~~~ty~Al~~L~llg~~---------~~~~~~k~v~~L~s~Q~~dGGfg~~pg~------- 187 (331)
T 3dss_B 126 LQKEDGSFAGDI--WGEIDTRFSFCAVATLALLGKL---------DAINVEKAIEFVLSCMNFDGGFGCRPGS------- 187 (331)
T ss_dssp TBCTTSCBBSST--TCCBCHHHHHHHHHHHHHHTCG---------GGSCHHHHHHHHHTTBCTTSCBCSSTTC-------
T ss_pred cCCCCCCEeccc--CCCCchHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhCcCCCCcCCCCCC-------
Confidence 478999998532 2234555677788888777531 2345899999999999999999853221
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA 161 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a 161 (212)
.+++..|+.++.+|..++...+ ..++|+++||+++|.+||||.++++ ...+..|.++
T Consensus 188 --------------esh~~~T~~al~aL~llg~~~~--------~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~ 245 (331)
T 3dss_B 188 --------------ESHAGQIYCCTGFLAITSQLHQ--------VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245 (331)
T ss_dssp --------------CCCHHHHHHHHHHHHHTTCGGG--------SCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHhccccch--------hhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHH
Confidence 2344568899999998764321 2378999999999999999988754 2345568899
Q ss_pred HHHHHHcCcCCCChHHHHHHHHHHHhcccCC-CccccccCcCCCCcccc
Q 028222 162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDD-GGWGESYLSCPNKLHMN 209 (212)
Q Consensus 162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d-Ggw~~~~~s~~~~~y~~ 209 (212)
+.+|..+|... ...++++++||++||+.+ |||+..+...++..+|+
T Consensus 246 l~~L~llg~~~--~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~ 292 (331)
T 3dss_B 246 LASLKIIGRLH--WIDREKLRSFILACQDEETGGFADRPGDMVDPFHTL 292 (331)
T ss_dssp HHHHHHTTCGG--GSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHH
T ss_pred HHHHHHcCCcc--hhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHH
Confidence 99999998753 457899999999999987 99999988777665554
No 11
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.83 E-value=2.2e-20 Score=174.94 Aligned_cols=170 Identities=20% Similarity=0.285 Sum_probs=123.5
Q ss_pred CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222 3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q 63 (212)
.|++.|||+ |.... ...+.+++|+.+|.+|..+....+.+ ..+.....++++++||+++|
T Consensus 493 ~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~-~~~~~~~~i~rAv~yL~~~Q 571 (732)
T 1w6k_A 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH-RAAEIRETLTQGLEFCRRQQ 571 (732)
T ss_dssp TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTS-SHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccc-cchhhHHHHHHHHHHHHhhc
Confidence 488999996 54311 12245779999999999876522211 01123578999999999999
Q ss_pred cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222 64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD 143 (212)
Q Consensus 64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d 143 (212)
++||||....+. .++..|+.++.+|..++..... ..+.+.++|+++||++.|++|
T Consensus 572 ~~DGsW~g~wg~----------------------~~~Y~T~~al~AL~~aG~~~~~---~~~~~~i~rav~~Lls~Q~~D 626 (732)
T 1w6k_A 572 RADGSWEGSWGV----------------------CFTYGTWFGLEAFACMGQTYRD---GTACAEVSRACDFLLSRQMAD 626 (732)
T ss_dssp CTTSCCCCSSBS----------------------SHHHHHHHHHHHHHHTTCCCBT---TBCCHHHHHHHHHHHTTCCTT
T ss_pred CCCCCccCcCCC----------------------ccchHHHHHHHHHHHhCCcccc---cchhHHHHHHHHHHHHhcccC
Confidence 999999742110 0122488899999888643211 112368999999999999999
Q ss_pred CCcCCCC-----------ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222 144 GSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 200 (212)
Q Consensus 144 G~w~g~~-----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~ 200 (212)
|+|.... ..+....|++|+++|..+|.. ..+.++++++||+++|++||+|.+...
T Consensus 627 GGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~ 692 (732)
T 1w6k_A 627 GGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENI 692 (732)
T ss_dssp SCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSC
T ss_pred CCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcc
Confidence 9996431 123467899999999999865 578999999999999999999996553
No 12
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.83 E-value=1.1e-20 Score=167.15 Aligned_cols=167 Identities=11% Similarity=0.094 Sum_probs=126.0
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|++.|||+-.+ ...+....|..+|.+|..++.... .....++++++||+++|++||||+....+
T Consensus 134 Q~~dGGf~g~~--~~~~~i~~T~~Al~aL~~lg~~~~------~~~i~i~kav~~L~s~Q~~DGsf~~~~~G-------- 197 (437)
T 2h6f_B 134 QSPEGGFGGGP--GQYPHLAPTYAAVNALCIIGTEEA------YDIINREKLLQYLYSLKQPDGSFLMHVGG-------- 197 (437)
T ss_dssp BCTTSSBBSST--TCCBCHHHHHHHHHHHHHHCCHHH------HTTSCHHHHHHHHHTTBCTTSCBBSSTTC--------
T ss_pred CCCCCCcCCcc--CCCcchhHHHHHHHHHHHhCCccc------ccchHHHHHHHHHHHhCCCCCCeeecCCC--------
Confidence 78999999643 234677899999999999854100 01123789999999999999999842111
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHH
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAI 162 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al 162 (212)
.+++..|..++.+|..++... .+.++|+++||++.|++||||.+.-+ .++...|++||
T Consensus 198 -------------e~d~~~ty~A~~~L~llg~~~--------~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al 256 (437)
T 2h6f_B 198 -------------EVDVRSAYCAASVASLTNIIT--------PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGL 256 (437)
T ss_dssp -------------CBSHHHHHHHHHHHHHTTCCC--------TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHH
T ss_pred -------------CccchhHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHH
Confidence 123445777888887765421 13578999999999999999976543 34556799999
Q ss_pred HHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCcccc
Q 028222 163 SGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~ 209 (212)
.+|..+|... ...++++++||+++|. ++|||...+.--.+.+|+.
T Consensus 257 ~aL~~lg~~~--~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSf 302 (437)
T 2h6f_B 257 AALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSF 302 (437)
T ss_dssp HHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHH
T ss_pred HHHHHcCCCC--cccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHH
Confidence 9999999763 4578999999999998 7999998888777777754
No 13
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.77 E-value=1.1e-17 Score=139.87 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=119.9
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|++.|||+.-. ...+++..|+.|+.+|..+.+. ..++++.++++++||++ .|++||+|....+-.+..+
T Consensus 51 q~~dGgf~~f~--~~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~-- 120 (277)
T 1qqf_A 51 KQPISAYAAFN--NRPPSTWLTAYVSRVFSLAANL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEM-- 120 (277)
T ss_dssp BCTTSCBCSST--TSCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG--
T ss_pred cCCCCCccccC--CCCccHHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhh--
Confidence 78999999432 3357888999999999998652 13667899999999996 9999999974332111111
Q ss_pred hcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-------------------
Q 028222 83 LLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL------------------- 142 (212)
Q Consensus 83 ~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~------------------- 142 (212)
.+..... .+.+..|+.++.+|...+....+ ...+..+.|+||++||.+.|++
T Consensus 121 -------~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~ 192 (277)
T 1qqf_A 121 -------IGGFRNTKEADVSLTAFVLIALQEARDICEG-QVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNK 192 (277)
T ss_dssp -------GGGGGSCTTHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred -------cCCCCCCccCccchHHHHHHHHHhhhhcccc-CCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC
Confidence 0110000 12345699999999877542000 0112357899999999998764
Q ss_pred --------------CCCcCCCCccc--hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222 143 --------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 143 --------------dG~w~g~~~~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
+|.|....+.. .+..|+++|++|..++.. +.+.+.++||+++|+++|||...
T Consensus 193 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT 260 (277)
T 1qqf_A 193 LEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DSVPPVVRWLNDERYYGGGYGST 260 (277)
T ss_dssp CCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TSHHHHHHHHHHCCCCTTSTTCH
T ss_pred hHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc
Confidence 44332332222 567899999999998753 36899999999999999999864
No 14
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.74 E-value=7.7e-17 Score=136.89 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=119.4
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|++.|||+.-. ...+++..||.|+.+|..+.+. ..++++.++++++||++ .|++||+|....+.....+
T Consensus 67 q~~dGgf~~f~--~~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~-- 136 (310)
T 2wy7_A 67 RQPSSAFAAFV--KRAPSTWLTAYVVKVFSLAVNL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM-- 136 (310)
T ss_dssp BCTTSCBCSST--TSCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG--
T ss_pred cCCCCCcccCC--CCCccHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhh--
Confidence 78999999432 2457888999999999998652 13667899999999996 9999999975332111111
Q ss_pred hcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-------------------
Q 028222 83 LLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL------------------- 142 (212)
Q Consensus 83 ~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~------------------- 142 (212)
.+..... .+.+..|+.++.+|...+..... ...+..+.|+||++||.+.|++
T Consensus 137 -------~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~ 208 (310)
T 2wy7_A 137 -------IGGLRNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR 208 (310)
T ss_dssp -------GGGGTTCSCHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTC
T ss_pred -------cCCcccccccccchHHHHHHHHHhccccccc-CCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCC
Confidence 0110000 12345699999999877542000 0112357899999999998774
Q ss_pred --------------CCCcCCCCccc--hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222 143 --------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 143 --------------dG~w~g~~~~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
+|.|....+.. .+..|++||++|.+++.. +.+.+.++||+++|+++|||...
T Consensus 209 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT 276 (310)
T 2wy7_A 209 LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST 276 (310)
T ss_dssp CCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTCH
T ss_pred cHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc
Confidence 33332222222 567899999999998753 46899999999999999999853
No 15
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.71 E-value=4.1e-17 Score=141.91 Aligned_cols=153 Identities=10% Similarity=-0.014 Sum_probs=112.0
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD 98 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~ 98 (212)
.|.+.+|..+|.+|..+..... .. ..+++++||.++|++||||..... +...
T Consensus 119 ~~~v~~T~~Al~~L~~lg~~~~------~i--d~~~~~~fL~~~Q~~DGSf~g~~~--------------------wGe~ 170 (377)
T 1n4q_B 119 SGHIAMTYTGLSCLIILGDDLS------RV--DKEACLAGLRALQLEDGSFCAVPE--------------------GSEN 170 (377)
T ss_dssp CCCHHHHHHHHHHHHHTTCCST------TS--CHHHHHHHHHHHBCTTSCBCSSTT--------------------CCCC
T ss_pred CCCHHHHHHHHHHHHHhCcccc------hh--hHHHHHHHHHHhcCCCCCeeeccC--------------------CCcc
Confidence 3678899999999999864221 11 237999999999999999974210 0112
Q ss_pred ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHHHHHHHcCcCCCC--h
Q 028222 99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSN--C 175 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al~aL~~~g~~~~~--~ 175 (212)
++.-|+.|+.+|..++... ...++|+++||++.|+.||||+...+ .++.-.|.+|+.+|..++..... .
T Consensus 171 DirftY~Al~~l~llg~~~--------~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~ 242 (377)
T 1n4q_B 171 DMRFVYCASCICYMLNNWS--------GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE 242 (377)
T ss_dssp BHHHHHHHHHHHHHTTCGG--------GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCH
T ss_pred hhHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccch
Confidence 3345777877777765421 23589999999999999999965432 34455688999999888865311 1
Q ss_pred HHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222 176 LAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 176 ~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~ 209 (212)
..++++++||+++| +|||...+.--.+.+|..
T Consensus 243 ~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSf 274 (377)
T 1n4q_B 243 KELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSF 274 (377)
T ss_dssp HHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHH
T ss_pred hhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHH
Confidence 27999999999999 899998888777887753
No 16
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.70 E-value=4.7e-16 Score=135.09 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=117.7
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
.|++.|||++-... .++...|+.|+++|..+.+. ..+++..++++++||+++|++||+|..-.......+.
T Consensus 103 ~Q~~dGgf~~~~~~--~~~~~lTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~- 173 (367)
T 1hzf_A 103 FRKADGSYAAWLSR--DSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQ- 173 (367)
T ss_dssp TBCTTSCBCSSTTS--CCCHHHHHHHHHHHHHHGGG------TCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGG-
T ss_pred ccCCCCCeeccCCC--CCcHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHhhccCCCccccccccccccc-
Confidence 47899999943222 45778999999999998753 1356789999999999999999999743221111110
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc-cc---hhHHHHHHHHHHHHHHhc--cc---------------
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-HK---KNEVNNFITNGVKFTEDS--QK--------------- 141 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~-~~---~~~i~~~i~ra~~~L~~~--Q~--------------- 141 (212)
+....+++.+..|+.++.+|...+...+. .. ..+....|+||++||.+. ++
T Consensus 174 --------gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~ 245 (367)
T 1hzf_A 174 --------GGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALT 245 (367)
T ss_dssp --------GGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred --------CCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHH
Confidence 10011234566799999999876532111 00 022456899999999776 21
Q ss_pred ---------------------cCCC---cCCC--------------------Cc--c-chhhHHHHHHHHHHHcCcCCCC
Q 028222 142 ---------------------LDGS---WYGT--------------------WG--V-CFIYSTWWAISGLVAAEKTYSN 174 (212)
Q Consensus 142 ---------------------~dG~---w~g~--------------------~~--~-~~~~~T~~al~aL~~~g~~~~~ 174 (212)
.+|+ |... |+ . ..+..|++||++|.+.+..
T Consensus 246 l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~--- 322 (367)
T 1hzf_A 246 LTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK--- 322 (367)
T ss_dssp HTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTCS---
T ss_pred hcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccCc---
Confidence 1332 4210 11 1 1467899999999987543
Q ss_pred hHHHHHHHHHHHhcccCCCccccc
Q 028222 175 CLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 175 ~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
.+.+.+.++||+++|+.+|||+..
T Consensus 323 ~~~~~~iv~WL~~qrn~~Ggw~sT 346 (367)
T 1hzf_A 323 AEMADQASAWLTRQGSFQGGFRST 346 (367)
T ss_dssp SHHHHHHHHHHHHHTTSTTCSCSH
T ss_pred hhhhHHHHHHHHhCcCCCCCcccH
Confidence 468999999999999999999864
No 17
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.65 E-value=1.1e-15 Score=136.49 Aligned_cols=176 Identities=14% Similarity=0.037 Sum_probs=125.0
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
.|++.|||+-.......+.+.+|..+|.+|..+...++.+. ....+..++++++||.++|++||||..-..+
T Consensus 121 ~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~-~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wG------- 192 (520)
T 3q7a_B 121 FLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGG-WKDLAAARQSIYEFFMRCKRPDGGFVVCEGG------- 192 (520)
T ss_dssp TBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSB-HHHHHHTHHHHHHHHHHHBCTTSCBBSSTTC-------
T ss_pred HcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchh-hhhhhhHHHHHHHHHHHHhCCCCCEecCCCC-------
Confidence 48899999864423457889999999999999977543210 0011122779999999999999999742111
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-------------
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT------------- 149 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~------------- 149 (212)
..++..|..|+.+|..++... ...++|+++||++.|+.||||+..
T Consensus 193 --------------e~Dir~TY~Al~~L~lLg~~~--------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~ 250 (520)
T 3q7a_B 193 --------------EVDVRGTYCLLVVATLLDIIT--------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSA 250 (520)
T ss_dssp --------------CBCHHHHHHHHHHHHHHTCCC--------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC--------
T ss_pred --------------CchHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhcCCCCCccCcccccccccccccc
Confidence 123445888888888776421 257899999999999999999651
Q ss_pred -----------CccchhhHHHHHHHHHHHcCcCCC----ChHHHHHHHHHHHhccc---CCCccccccCcCCCCccc
Q 028222 150 -----------WGVCFIYSTWWAISGLVAAEKTYS----NCLAIRKATDFLLNIQC---DDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 150 -----------~~~~~~~~T~~al~aL~~~g~~~~----~~~~i~~a~~~Ll~~Q~---~dGgw~~~~~s~~~~~y~ 208 (212)
....+.-.|.+|+.+|..++..+. ....+++.++||..+|. ++|||..++.--.+.+|.
T Consensus 251 ~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYS 327 (520)
T 3q7a_B 251 FPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYS 327 (520)
T ss_dssp ----CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHH
T ss_pred ccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhh
Confidence 233344457888888888776320 12357899999999996 569999888777777764
No 18
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.62 E-value=2.4e-16 Score=136.92 Aligned_cols=151 Identities=17% Similarity=0.105 Sum_probs=103.1
Q ss_pred CCCccccccCCCCCCCCccHHHHHHHHHHhhc---CCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLST---MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~---~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
-++||.+.++...+|++ .++..|-.... ..+. -.....+.|++++++|+++|++||||+.|...+
T Consensus 50 ~P~Gc~EQ~~s~~~P~~----~v~~~l~~~~~w~~~~~~--~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~------ 117 (367)
T 1hzf_A 50 LPRGCGEQTMIYLAPTL----AASRYLDKTEQWSTLPPE--TKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRD------ 117 (367)
T ss_dssp CCCSSHHHHHHHHHHHH----HHHHHHHHTTCSTTSCTT--HHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSC------
T ss_pred CCCCCHHHHHHHHHHHH----HHHHHHHHhhhcccCChh--HHHHHHHHHHHHHHHHHhccCCCCCeeccCCCC------
Confidence 36777776655545543 33444433211 1100 011234679999999999999999999775432
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc----------
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV---------- 152 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~---------- 152 (212)
++...|++|+.+|..+...... . ...++|+++||++.|++||+|.+.+..
T Consensus 118 ---------------~~~~lTa~v~~~l~~a~~~~~v-~----~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~ 177 (367)
T 1hzf_A 118 ---------------SSTWLTAFVLKVLSLAQEQVGG-S----PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLV 177 (367)
T ss_dssp ---------------CCHHHHHHHHHHHHHHGGGTCC-C----HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGS
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHHhhccCCCcccccccccccccCCCC
Confidence 2233699999999998754321 1 468999999999999999999876532
Q ss_pred ---chhhHHHHHHHHHHHcCcCC----------CChHHHHHHHHHHHhc
Q 028222 153 ---CFIYSTWWAISGLVAAEKTY----------SNCLAIRKATDFLLNI 188 (212)
Q Consensus 153 ---~~~~~T~~al~aL~~~g~~~----------~~~~~i~~a~~~Ll~~ 188 (212)
...+.|++++.+|.+.|... ...+.|+||++||+++
T Consensus 178 ~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 178 GNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 23567899999998876421 1246899999999776
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.61 E-value=3.7e-15 Score=124.49 Aligned_cols=116 Identities=17% Similarity=0.083 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHH
Q 028222 49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 128 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~ 128 (212)
.+.|++++.+|+++|++||||+.|... ++++..|+.|+.+|..+...... + ...
T Consensus 37 ~~~i~~g~~~~l~~q~~dGgf~~f~~~---------------------~~s~wlTa~v~~~l~~a~~~~~v-~----~~~ 90 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQPISAYAAFNNR---------------------PPSTWLTAYVSRVFSLAANLIAI-D----SQV 90 (277)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTTS---------------------CCCHHHHHHHHHHHHHHTTTSCC-C----HHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCC---------------------CccHHHHHHHHHHHHHHhhcCCC-C----HHH
Confidence 456889999999999999999977532 23455799999999988653221 1 368
Q ss_pred HHHHHHHHHh-ccccCCCcCCCCccc--------------hhhHHHHHHHHHHHcC------cCCCChHHHHHHHHHHHh
Q 028222 129 ITNGVKFTED-SQKLDGSWYGTWGVC--------------FIYSTWWAISGLVAAE------KTYSNCLAIRKATDFLLN 187 (212)
Q Consensus 129 i~ra~~~L~~-~Q~~dG~w~g~~~~~--------------~~~~T~~al~aL~~~g------~~~~~~~~i~~a~~~Ll~ 187 (212)
+.|+++||++ .|++||+|.+.|... ..+.|++++.+|...+ .+. ..+.|++|++||.+
T Consensus 91 i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~ 169 (277)
T 1qqf_A 91 LCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNS-LPGSINKAGEYLEA 169 (277)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCc-hHHHHHHHHHHHHH
Confidence 9999999996 999999998776422 2456899999998884 332 47899999999999
Q ss_pred cccC
Q 028222 188 IQCD 191 (212)
Q Consensus 188 ~Q~~ 191 (212)
+|+.
T Consensus 170 ~~~~ 173 (277)
T 1qqf_A 170 SYLN 173 (277)
T ss_dssp HHTT
T ss_pred Hhcc
Confidence 9874
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.60 E-value=5.5e-15 Score=125.43 Aligned_cols=115 Identities=20% Similarity=0.113 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 129 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i 129 (212)
+.|++++.+|+++|++||||+.|... ++++..|+.|+.+|..+...... + ...+
T Consensus 54 ~~i~~g~~~~l~~q~~dGgf~~f~~~---------------------~~s~wlTa~v~~~l~~a~~~~~v-~----~~~i 107 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQPSSAFAAFVKR---------------------APSTWLTAYVVKVFSLAVNLIAI-D----SQVL 107 (310)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTS---------------------CCCHHHHHHHHHHHHHHTTTSCC-C----HHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCC---------------------CccHHHHHHHHHHHHHHHhcCCC-C----HHHH
Confidence 56889999999999999999977532 23445799999999988653221 1 3689
Q ss_pred HHHHHHHHh-ccccCCCcCCCCccc--------------hhhHHHHHHHHHHHcC------cCCCChHHHHHHHHHHHhc
Q 028222 130 TNGVKFTED-SQKLDGSWYGTWGVC--------------FIYSTWWAISGLVAAE------KTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 130 ~ra~~~L~~-~Q~~dG~w~g~~~~~--------------~~~~T~~al~aL~~~g------~~~~~~~~i~~a~~~Ll~~ 188 (212)
.|+++||++ .|++||+|.+.|+.. ..+.|++++.+|..++ .+. ..+.|++|++||.++
T Consensus 108 ~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~~ 186 (310)
T 2wy7_A 108 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS-LPGSITKAGDFLEAN 186 (310)
T ss_dssp HHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcc-hHHHHHHHHHHHHHH
Confidence 999999996 999999998776432 2456999999999884 332 478999999999999
Q ss_pred ccC
Q 028222 189 QCD 191 (212)
Q Consensus 189 Q~~ 191 (212)
|++
T Consensus 187 ~~~ 189 (310)
T 2wy7_A 187 YMN 189 (310)
T ss_dssp GGG
T ss_pred hhc
Confidence 874
No 21
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.50 E-value=5.7e-14 Score=118.92 Aligned_cols=131 Identities=17% Similarity=0.073 Sum_probs=89.4
Q ss_pred HHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHH
Q 028222 55 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 134 (212)
Q Consensus 55 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~ 134 (212)
.++.|+..|+++|||+-... -... .... +.....+.+.+.|+.+|++|++..... +.+++.+++.||++
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d-~~~~---~~~~----~~~~~~t~DnddTa~vl~~Larv~~~~---~~~~y~~Ai~Rgl~ 104 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLD-YNSV---GNGG----GGNESGTIDNGATITEMVFLAEVYKSG---GNTKYRDAVRKAAN 104 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCC-TTTC---CCCC----CCCSCEECGGGTTHHHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCCCccee-cccc---cccC----CCCCCCCccCccHHHHHHHHHHHhccc---cchHHHHHHHHHHH
Confidence 38899999999999983211 0000 0000 001112345678999999999876532 12567899999999
Q ss_pred HHHhccccCCCcCCCCcc--------ch-hhHHHHHHHHHHHcCc-----C---------CCChHHHHHHHHHHHhcccC
Q 028222 135 FTEDSQKLDGSWYGTWGV--------CF-IYSTWWAISGLVAAEK-----T---------YSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 135 ~L~~~Q~~dG~w~g~~~~--------~~-~~~T~~al~aL~~~g~-----~---------~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
||+++|.++|||+.-+-. .+ -..|+-+|..|..++. . .+..++++||++||++.|..
T Consensus 105 wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~ 184 (332)
T 1gxm_A 105 FLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWK 184 (332)
T ss_dssp HHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred HHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCc
Confidence 999999999999643211 11 1357778888877642 1 22468999999999999999
Q ss_pred CCccc
Q 028222 192 DGGWG 196 (212)
Q Consensus 192 dGgw~ 196 (212)
+|||-
T Consensus 185 dggw~ 189 (332)
T 1gxm_A 185 QNGVL 189 (332)
T ss_dssp ETTEE
T ss_pred cCCCc
Confidence 99864
No 22
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.48 E-value=1.7e-13 Score=119.12 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcccCCCceeecCCCCChh----hhhh---------cCcccc--cc--h-hhcccCccchHHHHHHHHH
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWEPAGAPS----WIEL---------LNPIEF--LD--E-VIIEHDYVECTASALKAMT 111 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~----~~~~---------l~~~e~--~~--~-~~~d~~~~~~Ta~al~aL~ 111 (212)
+..+++++.|++.|+++|||+-... .... -... ..+... .. . ....+.+.+.|+.+|++|.
T Consensus 81 ~~A~~iAd~ll~~Q~~~GGW~kn~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~ 159 (408)
T 1r76_A 81 KAARHVADVIVSFQTPAGGWGKNQP-RDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLA 159 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCC-SSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCccc-cccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHH
Confidence 4579999999999999999973211 0000 0000 000000 00 0 0112345678999999999
Q ss_pred HHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccc--------h-hhHHHHHHHHHHHcCcC-----------
Q 028222 112 LFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVC--------F-IYSTWWAISGLVAAEKT----------- 171 (212)
Q Consensus 112 ~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~--------~-~~~T~~al~aL~~~g~~----------- 171 (212)
++.........+.+.+++.||++||+++|.+||||+.-+-.. + ...|+-+|..|..++..
T Consensus 160 rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~ 239 (408)
T 1r76_A 160 QVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAI 239 (408)
T ss_dssp HHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhh
Confidence 976531101235678999999999999999999996533111 1 13577777777666541
Q ss_pred -CCChHHHHHHHHHHHhcccC-CCccc
Q 028222 172 -YSNCLAIRKATDFLLNIQCD-DGGWG 196 (212)
Q Consensus 172 -~~~~~~i~~a~~~Ll~~Q~~-dGgw~ 196 (212)
.+..++++||++||++.|.. ||.|-
T Consensus 240 ~~~~~~av~Rgi~~Ll~~Qe~~dGsw~ 266 (408)
T 1r76_A 240 RTRALEATNAAIHCIVETQVVQDGKRL 266 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred hhhHHHHHHHHHHHHHHhhcccCCccc
Confidence 12468999999999999999 99875
No 23
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.46 E-value=9.5e-13 Score=126.23 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=115.5
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|++.|||++-. ...++...||.|+.+|..+.+. ..+++..+.++++||++ +|++||+|.....-.+..+.
T Consensus 312 Q~~DGsfs~w~--~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~- 382 (915)
T 2hr0_B 312 RQPSSAFAAFV--KRAPSTWLTAYVVKVFSLAVNL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI- 382 (915)
T ss_dssp CCTTTCCBSSS--SSCBCHHHHHHHHHHHHTTTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC-
T ss_pred hcCCCCccccC--CCCCcceehHHHHHHHHHhhhc------CCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc-
Confidence 78999999533 2356788999999999988642 14667999999999995 99999999743221100000
Q ss_pred hcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-------------------
Q 028222 83 LLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL------------------- 142 (212)
Q Consensus 83 ~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~------------------- 142 (212)
+..... .+.+..|+.+|.+|...+..... ...+...+++||++||.+.+.+
T Consensus 383 --------gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~-~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~ 453 (915)
T 2hr0_B 383 --------GGLRNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR 453 (915)
T ss_dssp --------CSCCCCTTHHHHHHHHHHHHHHHHTTTSTT-TCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTC
T ss_pred --------CCccCccccccccHHHHHHHHHhccccccc-CcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCC
Confidence 000000 12344689999999877532000 0112457899999999887654
Q ss_pred --------------CCCcCCCCccc--hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222 143 --------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 143 --------------dG~w~g~~~~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
+|.|...++.. .+..|++||++|..++.. ..+.+.++||+++|+.+|||..
T Consensus 454 ~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~----~~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 454 LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp CCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHHHHTCCCSSSSCCS
T ss_pred hHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCccc
Confidence 33321222222 456899999999998764 2588899999999999999985
No 24
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.34 E-value=4.4e-12 Score=126.42 Aligned_cols=171 Identities=10% Similarity=0.062 Sum_probs=114.5
Q ss_pred CCCCCCccc-cccCC-CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222 3 RHISKGGWT-FSDKD-HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 3 ~~~~~Ggw~-~~~~~-~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~ 80 (212)
.|++.|||+ |...+ +..++...||.++++|..+.+. ..+.+..+.++++||+++|++||+|.....--+..+
T Consensus 995 ~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m 1068 (1451)
T 4acq_A 995 YKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAY------IFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAI 1068 (1451)
T ss_dssp GBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTT------SCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGG
T ss_pred hcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhh------cccCHHHHHHHHHHHHhhcccCCcccccCcccchhh
Confidence 478999999 53221 1356788999999999998652 235678999999999999999999973321100000
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc--------------------
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-------------------- 140 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q-------------------- 140 (212)
-+. ..+++..||.+|.+|...+.. . ..++++||++||.+..
T Consensus 1069 ---------~gg---~~~~~~lTAyvl~aL~~~g~~--~-----~~~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAy 1129 (1451)
T 4acq_A 1069 ---------KGG---VEDEVTLSAYITIALLEIPLT--V-----THPVVRNALFCLESAWKTAQEGDHGSHVYTKALLAY 1129 (1451)
T ss_dssp ---------CCS---CSCHHHHHHHHHHHHHHTTCC--T-----TCHHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHH
T ss_pred ---------cCC---CCCCccchHHHHHHHHHcCCC--C-----CCHHHHHHHHHHHHhhhhcccccccCChHHHHHHHH
Confidence 000 013455699999999887531 1 1356788888887551
Q ss_pred ----------------------ccCCC---cCCC-----------C---ccchhhHHHHHHHHHHHcCcCC--CChHHHH
Q 028222 141 ----------------------KLDGS---WYGT-----------W---GVCFIYSTWWAISGLVAAEKTY--SNCLAIR 179 (212)
Q Consensus 141 ----------------------~~dG~---w~g~-----------~---~~~~~~~T~~al~aL~~~g~~~--~~~~~i~ 179 (212)
..+|+ |... | ....+..|++||+||..++..+ .+.+.+.
T Consensus 1130 Alal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~ 1209 (1451)
T 4acq_A 1130 AFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSAT 1209 (1451)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHH
T ss_pred HHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHH
Confidence 11333 5211 1 0123557999999999987421 1245788
Q ss_pred HHHHHHHhcccCCCccccc
Q 028222 180 KATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 180 ~a~~~Ll~~Q~~dGgw~~~ 198 (212)
+.++||.+.|+.+|||...
T Consensus 1210 ~iv~WL~~qr~~~Ggf~ST 1228 (1451)
T 4acq_A 1210 NIVKWITKQQNAQGGFSST 1228 (1451)
T ss_dssp TTHHHHTTCCCTTSCCSSH
T ss_pred HHHHHHHHcCCCCCCcccH
Confidence 8999999999999999863
No 25
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=3.2e-12 Score=111.21 Aligned_cols=142 Identities=11% Similarity=0.059 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHhcccCC----CceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchh
Q 028222 48 EPERFYDAANFMLYIQSKT----GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN 123 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~d----Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~ 123 (212)
..+..++.++||.++|.++ |||+..... . ++....+.+++..|..||++|+.++.. ...
T Consensus 51 ~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~-------~------~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~~~-- 113 (390)
T 3dra_B 51 TNQELIYYRNFIINQFMIENNQIISFRSTHYF-------Q------KTNQKYDCPNLSSTLFALYNLLILKSP--YHT-- 113 (390)
T ss_dssp CHHHHHHHHHHHHHHHEEECSSCEEECSSGGG-------G------GSCTTTSCCBHHHHHHHHHHHHHTTCC--GGG--
T ss_pred chHHHHHHHHHHHHHhccccCCCCCcCCCccC-------C------CCCCccCcccHHHHHHHHHHHHHhCch--hhc--
Confidence 4566788999999997653 888743210 0 000012457788899999999988642 000
Q ss_pred HHHHHHHHHHHHHHhccc---c-CCCcC-----C-------CCccchhhHHHHHHHHHHHcCcCCC-----------ChH
Q 028222 124 EVNNFITNGVKFTEDSQK---L-DGSWY-----G-------TWGVCFIYSTWWAISGLVAAEKTYS-----------NCL 176 (212)
Q Consensus 124 ~i~~~i~ra~~~L~~~Q~---~-dG~w~-----g-------~~~~~~~~~T~~al~aL~~~g~~~~-----------~~~ 176 (212)
.+ -.++.++||.+.|+ + ||+|. + .++...+..+.+|+..+..++.... ...
T Consensus 114 ~v--dr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~i 191 (390)
T 3dra_B 114 II--NRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDI 191 (390)
T ss_dssp TC--CHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCC
T ss_pred cc--cHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccc
Confidence 01 13567999999998 7 89996 2 2566677888888888888776530 034
Q ss_pred HHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222 177 AIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 208 (212)
Q Consensus 177 ~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~ 208 (212)
.++++++||++||+.||||+..+..-+-.-||
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~T 223 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIMDESHLGFT 223 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHH
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCCcccccchh
Confidence 58999999999999999999888754444343
No 26
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=99.29 E-value=1.5e-11 Score=106.70 Aligned_cols=125 Identities=18% Similarity=0.113 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHH
Q 028222 26 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS 105 (212)
Q Consensus 26 a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~ 105 (212)
+.+++||...+. ..-.+.|.-|+..|+.||++- +||++|+
T Consensus 118 sL~vLALC~~~~------------~v~~~~v~kLl~~~~~~g~~~----------------------------sVDT~AM 157 (399)
T 2pmv_A 118 SLAILALCQKNS------------EATLPIAVRFAKTLLANSSPF----------------------------NVDTGAM 157 (399)
T ss_dssp HHHHHHHHHHCH------------HHHHHHHHHHHHHHHHCCSCC----------------------------CHHHHHH
T ss_pred HHHHHHHHhcCC------------CCCHHHHHHHHHHHHccCCcc----------------------------cchHHHH
Confidence 555666665532 335666777778888886432 4778999
Q ss_pred HHHHHHHHHh---hCCc-cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHH
Q 028222 106 ALKAMTLFQK---LYPK-HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKA 181 (212)
Q Consensus 106 al~aL~~~~~---~~~~-~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a 181 (212)
+++||..+.. .... ..+.++..++++++.+|++.|++||+|+ ..|.|++|++||...+..+...-...++
T Consensus 158 a~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~~~~~W~c~~a 231 (399)
T 2pmv_A 158 ATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEPSKKEWNCKKT 231 (399)
T ss_dssp HHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSCCSSCCCHHHH
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCCccccccHHHH
Confidence 9999999876 2111 1234578999999999999999999993 4799999999999998753222278999
Q ss_pred HHHHHhcccCCCcccc
Q 028222 182 TDFLLNIQCDDGGWGE 197 (212)
Q Consensus 182 ~~~Ll~~Q~~dGgw~~ 197 (212)
++||++ |..||+|+.
T Consensus 232 l~~l~~-q~~~G~F~n 246 (399)
T 2pmv_A 232 TDMILN-EIKQGKFHN 246 (399)
T ss_dssp HHHHHH-HHTTTTTCS
T ss_pred HHHHHH-HhhCCCcCC
Confidence 999999 999999984
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=1.5e-11 Score=121.87 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL 83 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~ 83 (212)
|++.|||++-. ...++...||.++.+|..+.+. +..++++.+.++++||.+.|++||.|..-....+..+
T Consensus 885 q~~dGgf~~f~--~~~~s~~lTa~v~~~l~~a~~~-----~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~--- 954 (1325)
T 2pn5_A 885 RQTDGSFGLWE--TTNGSVFLTAFVGTSMQTAVKY-----ISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM--- 954 (1325)
T ss_dssp BCTTSCBCSSS--SSCCCHHHHHHHHHHHHHHTTT-----CSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHH---
T ss_pred CCCCCCeeccC--CCCCCeeehHHHHHHHHHHHhh-----EEcCCHHHHHHHHHHHHhhhccCCCccccccccChhh---
Confidence 78999999533 2357888999999999998652 2246678999999999999999999963221111110
Q ss_pred cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCcCC--------------
Q 028222 84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSWYG-------------- 148 (212)
Q Consensus 84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g-------------- 148 (212)
.+. ++ .....|+.+|.+|...+... .+....++||++||.+.|+. ++.|.-
T Consensus 955 ------~g~--~~-~~~~~tayvl~aL~~~g~~~-----~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~ 1020 (1325)
T 2pn5_A 955 ------QGG--LR-NGVALTSYVLMALLENDIAK-----AKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTM 1020 (1325)
T ss_dssp ------HCC--SS-TTHHHHHHHHHHHHTCHHHH-----HHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTT
T ss_pred ------cCc--cc-CCccccHHHHHHHhhCcccc-----cccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCch
Confidence 000 00 12234677777776543221 01135688899999888776 565520
Q ss_pred ---------------------CCc-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222 149 ---------------------TWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 149 ---------------------~~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
.|. ......|++||++|...+. .+.+.+.++||++.|+.+|+|..
T Consensus 1021 ~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL~~q~~~~g~w~s 1087 (1325)
T 2pn5_A 1021 KEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK----YTDGIPVMNWLVNQRYVTGSFPS 1087 (1325)
T ss_dssp HHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCTTSSCSS
T ss_pred HHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc----chhhHHHHHHHHhccCCCCCccc
Confidence 010 1234578999999998764 34778899999999999999984
No 28
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.24 E-value=3.6e-11 Score=119.90 Aligned_cols=116 Identities=14% Similarity=0.034 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 129 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i 129 (212)
+.|++++++|+++|++||||+.|...+. -++++.-.||+|+..|+.+.....-. ...+
T Consensus 983 ~~i~~g~~~ll~~q~~dGgf~~f~~~~~-----------------~~~~s~wlTAyv~~~l~~a~~~~~v~-----~~~l 1040 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYDGSYSTFGERYG-----------------RNQGNTWLTAFVLKTFAQARAYIFID-----EAHI 1040 (1451)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSTTGGG-----------------CCCCCHHHHHHHHHHHHHHTTTSCCC-----THHH
T ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCC-----------------CCCCchhHHHHHHHHHHHhhhhcccC-----HHHH
Confidence 3478999999999999999997743110 01233446999999999876432211 3689
Q ss_pred HHHHHHHHhccccCCCcCC--CCc--------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 130 TNGVKFTEDSQKLDGSWYG--TWG--------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 130 ~ra~~~L~~~Q~~dG~w~g--~~~--------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
.+|++||+++|++||+|.. .|. ....+.|++++.||.++|... ..+.+++|++||.++
T Consensus 1041 ~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~-~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1041 TQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTV-THPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh
Confidence 9999999999999999973 331 134678999999999999865 578999999999875
No 29
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=99.24 E-value=1.2e-10 Score=101.58 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=69.4
Q ss_pred ccchHHHHHHHHHHHHhhCCc-cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCC-hH
Q 028222 99 YVECTASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN-CL 176 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~-~~ 176 (212)
+||+||++++||..+...... .....+..++++.+.+|++.|++||+|+ ..|.|++|++||...+..+.. ..
T Consensus 177 sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~~~~w 250 (414)
T 2bb6_A 177 SVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSVELGT 250 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCcccccc
Confidence 688999999999998764211 1122334444444488889999999993 368899999999999986521 13
Q ss_pred HHHHHHHHHHhcccCCCcccc
Q 028222 177 AIRKATDFLLNIQCDDGGWGE 197 (212)
Q Consensus 177 ~i~~a~~~Ll~~Q~~dGgw~~ 197 (212)
...+++++|++ |.+||+|..
T Consensus 251 ~~~~a~~~Ll~-q~~dG~F~n 270 (414)
T 2bb6_A 251 ACLKAKAALQA-SLQHKTFQN 270 (414)
T ss_dssp HHHHHHHHHHH-HHTTTCCCS
T ss_pred hHHHHHHHHHH-hccCCCCCC
Confidence 78899999999 999999984
No 30
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=2.6e-11 Score=120.24 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 129 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i 129 (212)
+.+++++++|+++|++||||+.|... +++...|++|+.+|..+......-. ...+
T Consensus 872 ~~i~~g~~rll~~q~~dGgf~~f~~~---------------------~~s~~lTa~v~~~l~~a~~~~~~v~----~~~l 926 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTDGSFGLWETT---------------------NGSVFLTAFVGTSMQTAVKYISDID----AAMV 926 (1325)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSSSS---------------------CCCHHHHHHHHHHHHHHTTTCSCSC----HHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeeccCCC---------------------CCCeeehHHHHHHHHHHHhhEEcCC----HHHH
Confidence 45788888999999999999977542 2344579999999998864321111 3679
Q ss_pred HHHHHHHHhccccCCCcCCCCcc----------chhhHHHHHHHHHHHcCcCC-CChHHHHHHHHHHHhcccC-CCcccc
Q 028222 130 TNGVKFTEDSQKLDGSWYGTWGV----------CFIYSTWWAISGLVAAEKTY-SNCLAIRKATDFLLNIQCD-DGGWGE 197 (212)
Q Consensus 130 ~ra~~~L~~~Q~~dG~w~g~~~~----------~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~Ll~~Q~~-dGgw~~ 197 (212)
.|+++||.+.|++||+|.+.|.. ...+.|++++.+|...|... .....+++|++||.++|+. +++|+.
T Consensus 927 ~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~ 1006 (1325)
T 2pn5_A 927 EKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL 1006 (1325)
T ss_dssp HHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH
Confidence 99999999999999999775431 12345788888888776432 1346899999999998876 788865
Q ss_pred c
Q 028222 198 S 198 (212)
Q Consensus 198 ~ 198 (212)
.
T Consensus 1007 a 1007 (1325)
T 2pn5_A 1007 S 1007 (1325)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=5.7e-11 Score=103.39 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222 51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 130 (212)
Q Consensus 51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ 130 (212)
.++++++||+++|+.||||+..+. .| ++...|..+|.+|..++... ..+.
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~------------~E---------sH~G~TfCalaaL~lL~~~~---------~d~~ 241 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIM------------DE---------SHLGFTFCAIASLKLLNYPL---------EKLK 241 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTT------------SC---------CCHHHHHHHHHHHHHTTCCG---------GGCH
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCC------------cc---------cccchhHHHHHHHHHhCccc---------ccHH
Confidence 378999999999999999995322 12 34446888999999886431 2367
Q ss_pred HHHHHHHhccc----------------------------cCCCcCCCCcc-chhhHHHHHHHHHHHcCcCCCChHHHHHH
Q 028222 131 NGVKFTEDSQK----------------------------LDGSWYGTWGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKA 181 (212)
Q Consensus 131 ra~~~L~~~Q~----------------------------~dG~w~g~~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a 181 (212)
+.++||.++|. ++|||.|+... ..+=-+.+++.+|..++......-..++.
T Consensus 242 ~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l 321 (390)
T 3dra_B 242 STKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKA 321 (390)
T ss_dssp HHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred HHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCHHHH
Confidence 88999999997 57999887532 11223667777787777411012235677
Q ss_pred HHHHHhcc-cC-CCccccccCcCCCCcccc
Q 028222 182 TDFLLNIQ-CD-DGGWGESYLSCPNKLHMN 209 (212)
Q Consensus 182 ~~~Ll~~Q-~~-dGgw~~~~~s~~~~~y~~ 209 (212)
.+||++|| ++ .|||+..+...++..+|+
T Consensus 322 ~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~ 351 (390)
T 3dra_B 322 EDYLLNKTQNQLFGGFGRDPDSTPDPMHSY 351 (390)
T ss_dssp HHHHHHTTBCTTTCSBCSSTTSCCCHHHHH
T ss_pred HHHHHHhccCCCCCCcCCCCCCCCchHHHH
Confidence 89999984 54 899999998777665554
No 32
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.15 E-value=1.2e-10 Score=111.66 Aligned_cols=116 Identities=21% Similarity=0.118 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 129 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i 129 (212)
+.|++++.+|+.+|++||||+.|... +++.-.|++|+..|..+...... . ...+
T Consensus 299 ~~i~~g~~rll~~Q~~DGsfs~w~~~---------------------~~s~wlTAyv~~~l~~a~~~~~v-~----~~~i 352 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPSSAFAAFVKR---------------------APSTWLTAYVVKVFSLAVNLIAI-D----SQVL 352 (915)
T ss_dssp HHHHHHHHHHGGGCCTTTCCBSSSSS---------------------CBCHHHHHHHHHHHHTTTTTSCC-C----HHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccccCCC---------------------CCcceehHHHHHHHHHhhhcCCC-C----HHHH
Confidence 35777888999999999999977532 22344699999999887543211 1 3689
Q ss_pred HHHHHHHHh-ccccCCCcCCCCcc--------------chhhHHHHHHHHHHHcCcC-----CCChHHHHHHHHHHHhcc
Q 028222 130 TNGVKFTED-SQKLDGSWYGTWGV--------------CFIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 130 ~ra~~~L~~-~Q~~dG~w~g~~~~--------------~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~Ll~~Q 189 (212)
.+|++||++ .|.+||+|.+.|.. ...+.|++++.+|..+|.. +...+.+++|++||.+.+
T Consensus 353 ~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~ 432 (915)
T 2hr0_B 353 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 432 (915)
T ss_dssp HHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhh
Confidence 999999995 99999999765431 2345689999999988652 124678999999999886
Q ss_pred cC
Q 028222 190 CD 191 (212)
Q Consensus 190 ~~ 191 (212)
..
T Consensus 433 ~~ 434 (915)
T 2hr0_B 433 MN 434 (915)
T ss_dssp GG
T ss_pred hc
Confidence 54
No 33
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.98 E-value=1.3e-08 Score=95.77 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=109.4
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
.|+++|||++-. ...++.=.||.|+..|..+.+. ..++++.+.+++.||+++|.+||.|.....--+..+
T Consensus 380 ~q~~DGsfs~w~--~~~~s~wLTAyV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~-- 449 (767)
T 4fxk_B 380 FRKADGSYAAWL--SRDSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM-- 449 (767)
T ss_dssp TBCTTSCBBSSS--SSCBCHHHHHHHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCC--
T ss_pred hhcCCCCcccCC--CCCCCchhHHHHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhhcccchhcchhcchhh--
Confidence 478999999432 2234555899999999998652 236788999999999999999999974321100000
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCcc----chhHHHHHHHHHHHHHHhcccc----------------
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH----KKNEVNNFITNGVKFTEDSQKL---------------- 142 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~----~~~~i~~~i~ra~~~L~~~Q~~---------------- 142 (212)
-+........+..||+++.+|...+...... ....+...+.|+++||.+....
T Consensus 450 -------~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~~~~~y~~Al~ayaL~ 522 (767)
T 4fxk_B 450 -------QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALS 522 (767)
T ss_dssp -------CSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred -------cCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 0000011123456899999998765432211 1133455677777777443211
Q ss_pred ------------------------CC-CcCCC--------------------C---ccchhhHHHHHHHHHHHcCcCCCC
Q 028222 143 ------------------------DG-SWYGT--------------------W---GVCFIYSTWWAISGLVAAEKTYSN 174 (212)
Q Consensus 143 ------------------------dG-~w~g~--------------------~---~~~~~~~T~~al~aL~~~g~~~~~ 174 (212)
++ .|... | ....+..|++||+++......
T Consensus 523 l~~~~~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~~--- 599 (767)
T 4fxk_B 523 LTKAPVDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK--- 599 (767)
T ss_dssp HHTCTTHHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSS---
T ss_pred HcCCcHHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCCc---
Confidence 11 12100 0 001244689999988876433
Q ss_pred hHHHHHHHHHHHhcccCCCccccc
Q 028222 175 CLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 175 ~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
.+.+.+.++||+++|+..|||...
T Consensus 600 ~~~a~~iv~WL~~Qr~~~Ggf~ST 623 (767)
T 4fxk_B 600 AEMADQASAWLTRQGSFQGGFRST 623 (767)
T ss_dssp CHHHHHHHHHHHHTCCTTSSCSSH
T ss_pred hhHHHHHHHHHHHhhcCCCCCcCH
Confidence 456888899999999999999854
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.80 E-value=5.3e-09 Score=91.29 Aligned_cols=107 Identities=12% Similarity=-0.059 Sum_probs=77.5
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHH----HHHHhcccCCCceeecCCCCChhhhhhcCcccccchhh
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA----NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVI 94 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av----~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~ 94 (212)
+.++|.||.+++||.-+.+.- ..+.....+.+++ .+|++.|++||+|+.
T Consensus 175 ~~sVDT~AMA~lAL~C~~~~~----~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN----------------------- 227 (414)
T 2bb6_A 175 HVSVDTMAMAGMAFSCLELSN----LNPKQRNRINLALKRVQEKILKAQTPEGYFGN----------------------- 227 (414)
T ss_dssp TTHHHHHHHHHHHHHHHHHHT----SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS-----------------------
T ss_pred cccccHHHHHHHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHHHhhcCCCCccc-----------------------
Confidence 458999999999999986521 0122345566666 888899999999972
Q ss_pred cccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcC
Q 028222 95 IEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAE 169 (212)
Q Consensus 95 ~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g 169 (212)
+..|+.|+++|...+.. + .+-.-.+.+++++|++ |.+||+|. ....|+.+|.||...+
T Consensus 228 -----~~ST~lA~QAL~~~~~~-~----~~~~w~~~~a~~~Ll~-q~~dG~F~------np~ataQ~lpaL~gkt 285 (414)
T 2bb6_A 228 -----VYSTPLALQLLMGSLRP-S----VELGTACLKAKAALQA-SLQHKTFQ------NPLMISQLLPVLNQKS 285 (414)
T ss_dssp -----TTTHHHHHHHHTTCSSC-C----HHHHHHHHHHHHHHHH-HHTTTCCC------SHHHHHHHHHHTTTCC
T ss_pred -----hhhHHHHHHHHHhcCCC-c----ccccchHHHHHHHHHH-hccCCCCC------ChHHHHHHHHHhcCCC
Confidence 22599999999876431 1 1111368899999999 99999993 2457888888887543
No 35
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.66 E-value=4.2e-07 Score=91.96 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=104.6
Q ss_pred CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhh
Q 028222 3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWI 81 (212)
Q Consensus 3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~ 81 (212)
.|++.|||++-.. ..++.=.||.++..|..+.+. ..++++.+.++++||.+ +|++||.|.....-.+..+
T Consensus 1058 ~q~~dGsfs~w~~--~~~s~wLTAyv~~~l~~A~~~------~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~- 1128 (1661)
T 2b39_A 1058 FRQKSSAYAAFQY--RPPSTWLTAYVVKVFALAANL------IAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEM- 1128 (1661)
T ss_dssp TBCTTSCBCSSTT--SCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTS-
T ss_pred hhcCCCCccccCC--CCCchhhhHHHHHHHHhhhhc------ccCCHHHHHHHHHHhhHhhCCCCCccccccceechhh-
Confidence 3689999995332 245566899999999998652 14678999999999995 9999999963211000000
Q ss_pred hhcCcccccchhhc-ccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc---------------------
Q 028222 82 ELLNPIEFLDEVII-EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS--------------------- 139 (212)
Q Consensus 82 ~~l~~~e~~~~~~~-d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~--------------------- 139 (212)
-+.... ..+.+..||.++.+|...+.... ....++...+.++++||.+.
T Consensus 1129 --------~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~-~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~layAL~l~g 1199 (1661)
T 2b39_A 1129 --------IGGFRDTREKDVSLTAFVLIALHEAKDICE-AQVNSLGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLG 1199 (1661)
T ss_dssp --------CCCTTCCTTSSHHHHHHHHHHHHHTTTTTT-TTCSSHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTT
T ss_pred --------cCCccccccCccccHHHHHHHHHhcccccc-ccCcchhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcC
Confidence 000000 01134458888888876532100 00011234556666666543
Q ss_pred -------------cccCCCcCCCCc-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222 140 -------------QKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 140 -------------Q~~dG~w~g~~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
......|....+ ...+..|++||++|...+... .+.+.++||++.|+.+|||...
T Consensus 1200 ~~a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~~----~~~~iv~wL~~qr~~~gg~~ST 1268 (1661)
T 2b39_A 1200 KLEGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDYD----TTPPVVRWLNEQRYYGGGYGST 1268 (1661)
T ss_dssp CCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTT----TSHHHHHHHHHCCTBTTBBCSH
T ss_pred CcHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCChh----hHHHHHHHHHhcccCCCCcccc
Confidence 221223421111 113457889999999876542 3567789999999999999854
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.57 E-value=4.7e-08 Score=84.88 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=80.5
Q ss_pred CCCCccHHHHHHHHHHhhcC-CCCCc-C-CCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhc
Q 028222 19 LPVSDCSSESFVCCLHLSTM-PPEIV-G-EKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 95 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~-~~~~~-~-~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~ 95 (212)
..++|.+|.+++||.-+.+. +.++. + +.....++++++.+|++.|++||+|+.
T Consensus 149 ~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn------------------------ 204 (399)
T 2pmv_A 149 PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGD------------------------ 204 (399)
T ss_dssp CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSS------------------------
T ss_pred cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcccc------------------------
Confidence 44899999999999988651 11100 0 111256789999999999999999982
Q ss_pred ccCccchHHHHHHHHHHHHhhCCccchhHHHH-HHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCc
Q 028222 96 EHDYVECTASALKAMTLFQKLYPKHKKNEVNN-FITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEK 170 (212)
Q Consensus 96 d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~-~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~ 170 (212)
+..|+.|++||...+.. +. .. .+.++++||++ |.+||+|. ....|+.+|.+|...+.
T Consensus 205 ----~yST~LA~QAL~~~~~~-~~------~~W~c~~al~~l~~-q~~~G~F~------np~~taQilPaL~~kty 262 (399)
T 2pmv_A 205 ----IYSTGLAMQALSVTPEP-SK------KEWNCKKTTDMILN-EIKQGKFH------NPMSIAQILPSLKGKTY 262 (399)
T ss_dssp ----HHHHHHHHHHHHHCSSC-CS------SCCCHHHHHHHHHH-HHTTTTTC------SHHHHHHHHHHHTTCCG
T ss_pred ----cccHHHHHHHHHhcCCC-cc------ccccHHHHHHHHHH-HhhCCCcC------CHHHHHHHHHHhcCCCc
Confidence 22699999999887532 11 12 58899999999 99999993 35688999999876543
No 37
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.56 E-value=7.3e-09 Score=104.22 Aligned_cols=175 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|+++|||.+-.. ..+++=.||.|++.|..+.+. +-.++++.+.++++||++ +|++||.|.....--+..+.
T Consensus 1043 q~~DGsfs~w~~--~~~stWLTAyV~k~f~~A~~~-----i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~- 1114 (1642)
T 3prx_B 1043 KKADHSYAAFTN--RASSSWLTAYVVKVFAMAAKM-----VAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQ- 1114 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCeecCCC--CCCccccHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhcc-
Confidence 678999994321 123333899999999997652 112667899999999998 89999999743211111110
Q ss_pred hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCcC--------------
Q 028222 83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSWY-------------- 147 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~-------------- 147 (212)
|......+.+..||.++.||...+...+. ....+..++.||++||.+.... ...+.
T Consensus 1115 --------Gg~~~~~~~~~lTA~vliaL~e~~~~~~~-~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~ 1185 (1642)
T 3prx_B 1115 --------GGIQGAEEEVYLTAFILVALLESKTICND-YVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQL 1185 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------CCccCCCCcccchHHHHHHHHhccccccc-ccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCc
Confidence 11000112456799999999876532110 0112346788888888755221 00000
Q ss_pred -------------CCCcc-----chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 148 -------------GTWGV-----CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 148 -------------g~~~~-----~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
..|.. ..+..|++||+||...+.. ......++||.++|+..|||+..-
T Consensus 1186 ~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~----~~a~~iv~WL~~qr~~~Ggf~STQ 1251 (1642)
T 3prx_B 1186 NDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKMKKF----DQTGPIVRWLTDQNFYGETYGQTQ 1251 (1642)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCch----hhHHHHHHHHHHhccCCCcccCcH
Confidence 01221 1345789999999887542 356778899999999999998643
No 38
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.49 E-value=2.2e-06 Score=86.84 Aligned_cols=171 Identities=9% Similarity=0.053 Sum_probs=100.9
Q ss_pred CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222 4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~ 82 (212)
|++.|||++-. ...++.=.||.++..|..+.+. + .++++.+.++++||.+ +|++||.|.....-.+..+.
T Consensus 1060 q~~dGsfs~w~--~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~- 1130 (1676)
T 3cu7_A 1060 RNADYSYSVWK--GGSASTWLTAFALRVLGQVNKY-----V-EQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQ- 1130 (1676)
T ss_dssp BCTTSCBCSSS--SSCCCHHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCC-
T ss_pred cCCCCCccccC--CCCCcEEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhc-
Confidence 68999999532 2344566899999999998752 1 4678999999999999 99999998632110000000
Q ss_pred hcCcccccchhh--cccCccchHHHHHHHHHHHHhhCCccchhHHHHH--------------------------------
Q 028222 83 LLNPIEFLDEVI--IEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF-------------------------------- 128 (212)
Q Consensus 83 ~l~~~e~~~~~~--~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~-------------------------------- 128 (212)
+... ...+.+..||.++.+|...+...+ ..++..+
T Consensus 1131 --------gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~---~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~lA~Al~l~g 1199 (1676)
T 3cu7_A 1131 --------GTLPVEARENSLYLTAFTVIGIRKAFDICP---LVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGD 1199 (1676)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHTGGGSC---CHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred --------CCcccccccCccccHHHHHHHHHhcccccC---CcccHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcC
Confidence 0000 000122345666666654321000 0000011
Q ss_pred -----HHHHHHHHHhccc-cCC-----CcCCC----------Ccc-chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHH
Q 028222 129 -----ITNGVKFTEDSQK-LDG-----SWYGT----------WGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLL 186 (212)
Q Consensus 129 -----i~ra~~~L~~~Q~-~dG-----~w~g~----------~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll 186 (212)
.++.++.|++... .++ .|... |+. ..+..|+++|++|...+. ...+.+.++||+
T Consensus 1200 ~~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~----~~~~~~iv~wL~ 1275 (1676)
T 3cu7_A 1200 KTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD----INYVNPVIKWLS 1275 (1676)
T ss_dssp TTCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC----hhHHHHHHHHHH
Confidence 3444555655544 232 44221 121 134578999999998762 346788889999
Q ss_pred hcccCCCccccc
Q 028222 187 NIQCDDGGWGES 198 (212)
Q Consensus 187 ~~Q~~dGgw~~~ 198 (212)
+.|+.+|||...
T Consensus 1276 ~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A 1276 EEQRYGGGFYST 1287 (1676)
T ss_dssp HHSCSSSCCSTT
T ss_pred hccCCCCCcccc
Confidence 999999999854
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.41 E-value=1.6e-06 Score=81.61 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222 51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 130 (212)
Q Consensus 51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ 130 (212)
.++.++.-|++.|++||||+.|..... +.-.|+.|+..|..+...... + ...+.
T Consensus 369 ~l~~gyqrll~~q~~DGsfs~w~~~~~---------------------s~wLTAyV~~~l~~A~~~i~i-d----~~~i~ 422 (767)
T 4fxk_B 369 LIQKGYMRIQQFRKADGSYAAWLSRDS---------------------STWLTAFVLKVLSLAQEQVGG-S----PEKLQ 422 (767)
T ss_dssp HHHHHHHHHTTTBCTTSCBBSSSSSCB---------------------CHHHHHHHHHHHHHTCSSSSC-C----HHHHH
T ss_pred HHHHHHHHHHHhhcCCCCcccCCCCCC---------------------CchhHHHHHHHHHHHHhhcCc-c----hHHHH
Confidence 477888889999999999997743222 233699999999987543211 1 35789
Q ss_pred HHHHHHHhccccCCCcCCCC--------c-----cchhhHHHHHHHHHHHcCcCCC----------ChHHHHHHHHHHHh
Q 028222 131 NGVKFTEDSQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTYS----------NCLAIRKATDFLLN 187 (212)
Q Consensus 131 ra~~~L~~~Q~~dG~w~g~~--------~-----~~~~~~T~~al~aL~~~g~~~~----------~~~~i~~a~~~Ll~ 187 (212)
+++.||++.|.+||.|...- + .....-|++++.+|...+.... ....+.+|++||.+
T Consensus 423 ~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~ 502 (767)
T 4fxk_B 423 ETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGE 502 (767)
T ss_dssp HHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHH
Confidence 99999999999999995310 1 1124568899999987644211 13457777777754
Q ss_pred c
Q 028222 188 I 188 (212)
Q Consensus 188 ~ 188 (212)
.
T Consensus 503 ~ 503 (767)
T 4fxk_B 503 K 503 (767)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.32 E-value=3.7e-06 Score=85.14 Aligned_cols=112 Identities=22% Similarity=0.139 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222 51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 130 (212)
Q Consensus 51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ 130 (212)
.|+.++.-++..|++||||+.|.... ++.-.|+.|+..|..+.....- . ...+.
T Consensus 1047 ~i~~g~~r~l~~q~~dGsfs~w~~~~---------------------~s~wLTAyv~~~l~~A~~~~~v-~----~~~l~ 1100 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQKSSAYAAFQYRP---------------------PSTWLTAYVVKVFALAANLIAI-D----SKDLC 1100 (1661)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHTTTSCC-C----HHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccccCCCC---------------------CchhhhHHHHHHHHhhhhcccC-C----HHHHH
Confidence 56677788889999999999764322 2233699999999988654211 1 46899
Q ss_pred HHHHHHHh-ccccCCCcCCCC--------c-c-c----hhhHHHHHHHHHHHcCcC-----CCChHHHHHHHHHHHhc
Q 028222 131 NGVKFTED-SQKLDGSWYGTW--------G-V-C----FIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNI 188 (212)
Q Consensus 131 ra~~~L~~-~Q~~dG~w~g~~--------~-~-~----~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~Ll~~ 188 (212)
++++||.+ .|++||+|.... + . . ...-|++++.+|...|.. +.....+++|++||.+.
T Consensus 1101 ~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1661)
T 2b39_A 1101 ETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENH 1178 (1661)
T ss_dssp HHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHh
Confidence 99999995 999999984210 1 0 1 234589999999988642 12356889999999775
No 41
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.24 E-value=4.4e-06 Score=84.66 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222 51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 130 (212)
Q Consensus 51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ 130 (212)
.++.+..-+++.|++||||+.|.... ++.-.|+.|+..|..+.....- . ...+.
T Consensus 1048 ~i~~g~~r~l~~q~~dGsfs~w~~~~---------------------~s~wLTAyv~~~l~~A~~~~~v-~----~~~l~ 1101 (1676)
T 3cu7_A 1048 KLKEGMLSIMSYRNADYSYSVWKGGS---------------------ASTWLTAFALRVLGQVNKYVEQ-N----QNSIC 1101 (1676)
T ss_dssp HHHHHHHHGGGGBCTTSCBCSSSSSC---------------------CCHHHHHHHHHHHHHHHTTSCC-C----HHHHH
T ss_pred HHHHHHHHHhhccCCCCCccccCCCC---------------------CcEEEeHHHHHHHHHHHhcccC-C----HHHHH
Confidence 35555666778999999999773221 2233699999999988754211 1 46789
Q ss_pred HHHHHHHh-ccccCCCcCCCC--------cc-------chhhHHHHHHHHHHHcCcC---CCChHHHHHHHHHHHhc
Q 028222 131 NGVKFTED-SQKLDGSWYGTW--------GV-------CFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNI 188 (212)
Q Consensus 131 ra~~~L~~-~Q~~dG~w~g~~--------~~-------~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~Ll~~ 188 (212)
++++||.+ .|++||+|.... +. ....-|++++.+|..++.. ....+.+++|++||.+.
T Consensus 1102 ~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1102 NSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp HHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence 99999999 999999984211 10 1234578999999887542 11245677777777654
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.06 E-value=5.2e-07 Score=90.94 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222 50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 129 (212)
Q Consensus 50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i 129 (212)
..|+.+..-++++|++||||+.|...... .=.||.|+..|..+......-+ ...+
T Consensus 1030 ~~i~~Gyqr~l~yq~~DGsfs~w~~~~~s---------------------tWLTAyV~k~f~~A~~~i~~Vd----~~~l 1084 (1642)
T 3prx_B 1030 NQIVTGYAQQMVYKKADHSYAAFTNRASS---------------------SWLTAYVVKVFAMAAKMVAGIS----HEII 1084 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCeecCCCCCCc---------------------cccHHHHHHHHHHHHhhccCCC----HHHH
Confidence 45667778888999999999977432222 2258999999887654311001 3579
Q ss_pred HHHHHHHHh-ccccCCCcCCCC--------c-----cchhhHHHHHHHHHHHcCcCC-----CChHHHHHHHHHHHhc
Q 028222 130 TNGVKFTED-SQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTY-----SNCLAIRKATDFLLNI 188 (212)
Q Consensus 130 ~ra~~~L~~-~Q~~dG~w~g~~--------~-----~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~Ll~~ 188 (212)
.++++||++ +|++||+|.... | .....-|++++.||...+... .....+++|++||.+.
T Consensus 1085 ~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1085 CGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 999999998 899999995321 1 113456899999999886421 1356899999999765
No 43
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.95 E-value=0.015 Score=51.26 Aligned_cols=156 Identities=11% Similarity=0.137 Sum_probs=94.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc--cCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222 21 VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ--SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD 98 (212)
Q Consensus 21 ~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q--~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~ 98 (212)
..||.+..+.+|+.+-+. .+.+...+.+.+..+||+..+ .++|||-........-
T Consensus 143 ~LDD~g~~~~~Li~lY~~----T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~------------------- 199 (445)
T 3k11_A 143 ALDDAGAVCTAMIKLRLK----DESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTL------------------- 199 (445)
T ss_dssp SGGGTHHHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEE-------------------
T ss_pred cchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCce-------------------
Confidence 367788777777775432 245678899999999999988 5689987421110000
Q ss_pred ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCcCCCCcc--------chhhHHHHHHHHHHHcC
Q 028222 99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSWYGTWGV--------CFIYSTWWAISGLVAAE 169 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g~~~~--------~~~~~T~~al~aL~~~g 169 (212)
-+|+-.+++..|+.++....+.+..-++.+++....+....+++ .|-|.-.|.. .=..+.++++.||...-
T Consensus 200 WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l 279 (445)
T 3k11_A 200 WLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELL 279 (445)
T ss_dssp ETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHH
T ss_pred EecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHH
Confidence 12344577888888876532211002344444444444455544 5666422211 11357788888887642
Q ss_pred c--CC--C----ChHHHHHHHHHHHhcccCCCcccccc
Q 028222 170 K--TY--S----NCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 170 ~--~~--~----~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
. +. . .....++.++.|+++|.+||-|....
T Consensus 280 ~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vl 317 (445)
T 3k11_A 280 DVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLL 317 (445)
T ss_dssp HHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBT
T ss_pred HhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhcc
Confidence 1 11 0 13567888999999999999998644
No 44
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.72 E-value=0.0017 Score=60.58 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=52.1
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD 98 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~ 98 (212)
-|.+-|||-| |+.-. + .+.|. -.++++||+..|.+||+|+.... |.. ..
T Consensus 31 S~S~YDTAWV--Amvp~---~---~~~p~----Fp~~~~wil~nQ~~DGsWG~~~~---------------~~~----~D 79 (727)
T 3pya_A 31 TISAYDTAWV--ALIDA---G---DKTPA----FPSAVKWIAENQLSDGSWGDAYL---------------FSY----HD 79 (727)
T ss_dssp CCCHHHHHHH--HTCBC---S---SSSBS----CHHHHHHHHHTCCTTSCCSCSSS---------------CCH----HH
T ss_pred cCcHHHhHHH--hhccC---C---CCCCC----CHHHHHHHHhcCCCCCCCCCCCC---------------cch----hh
Confidence 3455688873 33221 1 13344 46788999999999999984211 000 01
Q ss_pred ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc
Q 028222 99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q 140 (212)
.+-.|..||.||...+.. ..+|.||+.||.+.-
T Consensus 80 ~ll~TLAcvlAL~~w~~~---------~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 80 RLINTLACVVALRSWNLF---------PHQCNKGITFFRENI 112 (727)
T ss_dssp HHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHH
Confidence 123588899999886421 258999999998764
No 45
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.57 E-value=0.0024 Score=60.10 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHH
Q 028222 53 YDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 132 (212)
Q Consensus 53 ~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra 132 (212)
.++++||+..|.+||+|+.... |.. ...+-.|..||.||...+.. .++|.||
T Consensus 77 p~~~~wil~nQ~~DGsWg~~~~---------------~~~----~d~l~~TlAcvlAL~~w~~~---------~~~i~~G 128 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEGFY---------------FLA----YDRILATLACIITLTLWRTG---------ETQVQKG 128 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCSSS---------------CCH----HHHHHHHHHHHHHHHHTTCC---------HHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCC---------------Cch----HHHHHHHHHHHHHHHHcccC---------HHHHHHH
Confidence 5789999999999999984211 000 01123588899999886421 2589999
Q ss_pred HHHHHhcc
Q 028222 133 VKFTEDSQ 140 (212)
Q Consensus 133 ~~~L~~~Q 140 (212)
+.||.+.-
T Consensus 129 l~fl~~nl 136 (785)
T 3s9v_A 129 IEFFRTQA 136 (785)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 46
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.56 E-value=0.0025 Score=59.88 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
-.++++||+..|.+||||+.... |. ..+.+-.|..||.||...+.. .++|.|
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~---------------~~----~~d~ll~TlAcvlAL~~w~~~---------~~~i~~ 106 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESH---------------FS----LCDRLLNTTNSVIALSVWKTG---------HSQVQQ 106 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTS---------------CC----HHHHHHHHHHHHHHHHHTTCC---------HHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCC---------------cc----hHHHHHHHHHHHHHHHHccCC---------HHHHHH
Confidence 46788999999999999984211 00 001223588899999886421 258999
Q ss_pred HHHHHHhcc
Q 028222 132 GVKFTEDSQ 140 (212)
Q Consensus 132 a~~~L~~~Q 140 (212)
|+.||.+.-
T Consensus 107 Gl~fl~~nl 115 (764)
T 3p5p_A 107 GAEFIAENL 115 (764)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
No 47
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.55 E-value=0.0025 Score=60.24 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222 52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 131 (212)
Q Consensus 52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r 131 (212)
-.++++||+..|.+||||+.... .. ....+-.|..||.||...+.. .++|.|
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~~~--~~-----------------~~d~ll~TlAcvlAL~~w~~~---------~~~i~~ 154 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQSH--FL-----------------LSDRLLATLSCVLVLLKWNVG---------DLQVEQ 154 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCTTC--CC-----------------HHHHHHHHHHHHHHHHHTTCC---------HHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCC--cc-----------------hHHHHHHHHHHHHHHHHccCC---------HHHHHH
Confidence 36788999999999999984211 00 001123588999999887421 258999
Q ss_pred HHHHHHhcc
Q 028222 132 GVKFTEDSQ 140 (212)
Q Consensus 132 a~~~L~~~Q 140 (212)
|+.||.+.-
T Consensus 155 Gl~fl~~nl 163 (817)
T 3sdr_A 155 GIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998774
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.48 E-value=0.0047 Score=57.59 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccccCCCcCCCCcc---chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 129 ITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 129 i~ra~~~L~~~Q~~dG~w~g~~~~---~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
....++||++.|.+||+|+..-+. -..-.|..|+.||...+.. ...|+||+.||.+.
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fl~~n 111 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF---PHQCNKGITFFREN 111 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence 566799999999999999643211 1246799999999987654 46899999999764
No 49
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.47 E-value=0.0039 Score=58.68 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccccCCCcCCCCc-c--chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222 128 FITNGVKFTEDSQKLDGSWYGTWG-V--CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~dG~w~g~~~-~--~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q 189 (212)
.....++||++.|.+||+|+..-. . ...-.|..|+.||...+.. ...|+||+.||.+.-
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQA 136 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHH
Confidence 456779999999999999964311 1 1256799999999997754 479999999997653
No 50
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.46 E-value=0.0045 Score=58.11 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccccCCCcCCCCc---cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222 128 FITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~dG~w~g~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q 189 (212)
.....++||++.|.+||+|+..-+ ....-.|..|+.||...+.. ...|+||+.||.+.-
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 356679999999999999964321 11245799999999997754 479999999997653
No 51
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.43 E-value=0.0047 Score=58.39 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccccCCCcCCCCcc---chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222 128 FITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~dG~w~g~~~~---~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q 189 (212)
.....++||++.|.+||+|+..-.. ...-.|..|+.||...+.. ...|+||+.||.+.-
T Consensus 102 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 102 QFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL 163 (817)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 3467799999999999999643221 1245799999999997754 479999999998753
No 52
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=96.23 E-value=0.036 Score=47.83 Aligned_cols=122 Identities=13% Similarity=0.034 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhc---CCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccc
Q 028222 25 SSESFVCCLHLST---MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVE 101 (212)
Q Consensus 25 Ta~~l~al~~~~~---~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~ 101 (212)
.+=++.+|...-+ .|..+...+...+.+++.++.|++.|.+||.|.....+. .+..+
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~--------------------~~y~E 294 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDP--------------------HSYLE 294 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCT--------------------TSCEE
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCC--------------------CCCcc
Confidence 3445555555332 343222223345678999999999999999998432110 01233
Q ss_pred h--HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-----c-----------cchhhHHHHHHH
Q 028222 102 C--TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-----G-----------VCFIYSTWWAIS 163 (212)
Q Consensus 102 ~--Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-----~-----------~~~~~~T~~al~ 163 (212)
+ ||....+|...... +.-.+++.++++|+++-|++..++||...+.- + ....++.+.+|+
T Consensus 295 sSatA~~ay~ll~~~~~--g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~~gt~~g~~~~~Y~~~p~~~~~~G~~~~ll 372 (382)
T 3pmm_A 295 ASATAGFAYGILKAVRK--RYVGQHYAGVAEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAIL 372 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TSSCGGGHHHHHHHHHHHHHTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHhhCCCCCCEeCeecCCCCCCChhhhhcccCCCCCccHHHHHH
Confidence 4 44444455443331 11124567899999999999999999663211 1 012467777777
Q ss_pred HHHHc
Q 028222 164 GLVAA 168 (212)
Q Consensus 164 aL~~~ 168 (212)
|+.+.
T Consensus 373 a~~e~ 377 (382)
T 3pmm_A 373 CLTEY 377 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 53
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.46 E-value=0.18 Score=44.41 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCcc----chhhHHHHHHHHHHH---cCcCC-
Q 028222 103 TASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVA---AEKTY- 172 (212)
Q Consensus 103 Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----~~~~~T~~al~aL~~---~g~~~- 172 (212)
.+-++.+|.......|. -.++++.+.+++.++.|++.|.+||.|...... ..+.+|++...+|.. .|...
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~ 347 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA 347 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence 44566777665544332 134667888999999999999999999642211 123456665555643 45432
Q ss_pred -CChHHHHHHHHHHHhcccCCCccc
Q 028222 173 -SNCLAIRKATDFLLNIQCDDGGWG 196 (212)
Q Consensus 173 -~~~~~i~~a~~~Ll~~Q~~dGgw~ 196 (212)
...++++|+++.|+++-++||--+
T Consensus 348 ~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 348 IAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 135789999999999988998543
No 54
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=95.34 E-value=0.11 Score=44.28 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=74.3
Q ss_pred HHHHHHHH-HhcccCCCce-eecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222 52 FYDAANFM-LYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 129 (212)
Q Consensus 52 i~~av~~L-l~~Q~~dGgw-~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i 129 (212)
+++.+.|. ...++.+||| ..+..+... . |.| -.+...+..|.+++...... .+++++.+.+
T Consensus 17 ~~~~l~fw~~~~~D~~GGf~~~~~~d~~~-----~-~~e---------K~l~~nar~i~~~a~a~~~~--~~~~~~~~~A 79 (388)
T 2gz6_A 17 LNDVLPFWENHSLDSEGGYFTCLDRQGKV-----Y-DTD---------KFIWLQNRQVWTFSMLCNQL--EKRENWLKIA 79 (388)
T ss_dssp HHTHHHHHHHHCBCTTSSBCCEEBTTSCE-----E-ECC---------EEHHHHHHHHHHHHHHHHHT--CCCHHHHHHH
T ss_pred HHhHHHHHHhcCCCCCCCEEeEECCCCCc-----C-Ccc---------hhHHHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 45677777 4466668885 555433210 1 011 12335778888888765531 1235567889
Q ss_pred HHHHHHHHhc-cccCCCcCCCC--------ccchhhHHHHHHHHHHHcCcC---CCChHHHHHHHHHHHhcccC-CCcc
Q 028222 130 TNGVKFTEDS-QKLDGSWYGTW--------GVCFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNIQCD-DGGW 195 (212)
Q Consensus 130 ~ra~~~L~~~-Q~~dG~w~g~~--------~~~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~Ll~~Q~~-dGgw 195 (212)
+++++||++. +.++|+|+... .....+..++++.||+.+... +...+..++..++|++...+ +|.|
T Consensus 80 ~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~ 158 (388)
T 2gz6_A 80 RNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKGKY 158 (388)
T ss_dssp HHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999998 67789986332 123457888899998764321 11234566677888877643 3443
No 55
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=94.78 E-value=0.21 Score=42.38 Aligned_cols=162 Identities=8% Similarity=-0.030 Sum_probs=84.5
Q ss_pred CCcc-c-cccCCCCCC---CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCCCceeecCCCCChhh
Q 028222 7 KGGW-T-FSDKDHGLP---VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTGGITGWEPAGAPSW 80 (212)
Q Consensus 7 ~Ggw-~-~~~~~~~~~---~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dGgw~~~~~~~~~~~ 80 (212)
.||| + |++.....| ...++|..+.++..+.+.- .+.+...+.++++++||++. ++++|||....... ..
T Consensus 32 ~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~---~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~d-g~- 106 (388)
T 2gz6_A 32 EGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQL---EKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRG-GE- 106 (388)
T ss_dssp TSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTT-SC-
T ss_pred CCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC-CC-
Confidence 7785 4 655322111 1447888888888754410 13455678899999999987 77899986321100 00
Q ss_pred hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc-cCCCcCCCCcc----chh
Q 028222 81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-LDGSWYGTWGV----CFI 155 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~dG~w~g~~~~----~~~ 155 (212)
...+.......+.++.+|+.+..... .+++.+...+.++++++... ++|.|...+.. ...
T Consensus 107 ------------~~~~~~~~~~~af~i~al~~~y~~tg---~~~~l~~A~~~~~~i~~~~~d~~g~~~~~~~~~~~~~~~ 171 (388)
T 2gz6_A 107 ------------PLVQPYNIFSDCFAAMAFSQYALASG---EEWAKDVAMQAYNNVLRRKDNPKGKYTKTYPGTRPMKAL 171 (388)
T ss_dssp ------------BCCCCCCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHTC--------------CCCCEET
T ss_pred ------------cccCCcchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCcccCcccCCCCCCCCC
Confidence 00012233456778888877654322 24456778888999998874 34544221110 001
Q ss_pred hHHHHHHHHHHHcCcCC---CChHHHHHHHHHHHhc
Q 028222 156 YSTWWAISGLVAAEKTY---SNCLAIRKATDFLLNI 188 (212)
Q Consensus 156 ~~T~~al~aL~~~g~~~---~~~~~i~~a~~~Ll~~ 188 (212)
...+..+.+|.++.... ...+.+++.++.+.+.
T Consensus 172 ~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~ 207 (388)
T 2gz6_A 172 AVPMILANLTLEMEWLLPQETLENVLAATVQEVMGD 207 (388)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 23345555666554321 1233455556666554
No 56
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=94.53 E-value=0.098 Score=44.76 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhc-CCCCCcCCCCcHHHHHHHHHHHHhcccC-CCceeecCCCCChhhhhhcCcccccchhhcccCccchH
Q 028222 26 SESFVCCLHLST-MPPEIVGEKMEPERFYDAANFMLYIQSK-TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 103 (212)
Q Consensus 26 a~~l~al~~~~~-~~~~~~~~~~~~~~i~~av~~Ll~~Q~~-dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~T 103 (212)
+=++.+|..+.+ .|.....++...+..++.+++|+..|++ ||-|...-... . + ..+..+++
T Consensus 216 gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~----------~--~-----~~~~~EsS 278 (373)
T 1nc5_A 216 GWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKG----------D--R-----SDNWLESS 278 (373)
T ss_dssp HHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCT----------T--S-----TTCCBCHH
T ss_pred hHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCC----------C--C-----CCCCcccc
Confidence 446677766444 3432222233456788999999999997 99987321100 0 0 01223444
Q ss_pred HHHHH--HHHHHHhhCCccchhHHHHHHHHHHHHHHhc---cccCCC
Q 028222 104 ASALK--AMTLFQKLYPKHKKNEVNNFITNGVKFTEDS---QKLDGS 145 (212)
Q Consensus 104 a~al~--aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~---Q~~dG~ 145 (212)
+.++. +|...... ++-.+++.+++.|+++.|.+. .++||.
T Consensus 279 atA~~ay~l~~g~~~--g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 279 GSCLYMYAIAKGINK--GYLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp HHHHHHHHHHHHHHH--TSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred HHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 44443 44432211 111145778999999999884 578884
No 57
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=94.17 E-value=1.7 Score=36.94 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhCCcc--chhHHHHHHHHHHHHHHhcccc-CCCcCCCCc-----c--chhhHHHHHHHHHHHc---C
Q 028222 103 TASALKAMTLFQKLYPKH--KKNEVNNFITNGVKFTEDSQKL-DGSWYGTWG-----V--CFIYSTWWAISGLVAA---E 169 (212)
Q Consensus 103 Ta~al~aL~~~~~~~~~~--~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g~~~-----~--~~~~~T~~al~aL~~~---g 169 (212)
.+-++.+|..+....|.. .++++.+..++.+++|++.|.+ ||.|..... . ..+.+|++...+|... |
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g 294 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 294 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence 444777777765543321 3456778889999999999997 999863211 1 1234566666666542 4
Q ss_pred cC-CCChHHHHHHHHHHHhc---ccCCCc
Q 028222 170 KT-YSNCLAIRKATDFLLNI---QCDDGG 194 (212)
Q Consensus 170 ~~-~~~~~~i~~a~~~Ll~~---Q~~dGg 194 (212)
.. ....++++|+++.|++. .++||-
T Consensus 295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 295 YLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred CCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 32 23578999999999884 477883
No 58
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=93.69 E-value=0.35 Score=41.55 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhh--CCc-c-chhHHHHHHHHHHHHHHhccccCCCcCCCCcc----chhhHHHHHHHHHHH---cCcC
Q 028222 103 TASALKAMTLFQKL--YPK-H-KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVA---AEKT 171 (212)
Q Consensus 103 Ta~al~aL~~~~~~--~~~-~-~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----~~~~~T~~al~aL~~---~g~~ 171 (212)
.+-++.+|....+. .|. + .++++.+.+++.+++|++.|.+||.|...... ..+.+|++...+|.. .|..
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l 314 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV 314 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence 34467777665543 222 1 34567788999999999999999999632211 123456666666544 3432
Q ss_pred -CCChHHHHHHHHHHHhcccCCCccccc
Q 028222 172 -YSNCLAIRKATDFLLNIQCDDGGWGES 198 (212)
Q Consensus 172 -~~~~~~i~~a~~~Ll~~Q~~dGgw~~~ 198 (212)
....++++|+++.|+++.++||.-+..
T Consensus 315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 315 GQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp CGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 224789999999999999999976544
No 59
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=93.35 E-value=0.68 Score=44.88 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=75.5
Q ss_pred CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCCCceeecC-CCCChhhhhhcCcccccchhh
Q 028222 17 HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITGWE-PAGAPSWIELLNPIEFLDEVI 94 (212)
Q Consensus 17 ~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~~~-~~~~~~~~~~l~~~e~~~~~~ 94 (212)
+++.-.-|++.++++|+.++. .+..++.++||.+.| +++|.|..-. .+.... +
T Consensus 326 Yry~W~RDaa~t~~all~~G~-----------~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~----------w---- 380 (1020)
T 1ulv_A 326 YHAVWARDMYQSVTALLAAGD-----------EEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIG----------Q---- 380 (1020)
T ss_dssp TCSBCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBC----------C----
T ss_pred CceEccchHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhcCCCCCeeeEEecCCCcC----------C----
Confidence 555667799999999988742 466789999999999 8999886321 111000 1
Q ss_pred cccCccchHHHHHHHHHHHHhhCCccchhHHHH-HHHHHHHHHHhccc--cCCCcCCCCccchhhHHHHHHHHHHH
Q 028222 95 IEHDYVECTASALKAMTLFQKLYPKHKKNEVNN-FITNGVKFTEDSQK--LDGSWYGTWGVCFIYSTWWAISGLVA 167 (212)
Q Consensus 95 ~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~-~i~ra~~~L~~~Q~--~dG~w~g~~~~~~~~~T~~al~aL~~ 167 (212)
.....|.++..|.++..+.+. + .++-+ .++++++|+.+.-. ..+-|..+.+ .+.+..+++..||.+
T Consensus 381 -~~~Q~D~~g~~l~~~~~~~~~----d-~~~w~~~v~~al~~i~~~g~~~~~~~WEe~~g-~~~~t~~~~~~AL~~ 449 (1020)
T 1ulv_A 381 -NGIQLDETAFPILLANQIGRT----D-AGFYRNELKPAADYLVAAGPKTPQERWEETGG-YSTSTLASQIAALAA 449 (1020)
T ss_dssp -CCCBTHHHHHHHHHHHHHTCC----C-HHHHHHTHHHHHHHHHHHCSCBSBCTTSSCCB-EEHHHHHHHHHHHHH
T ss_pred -CCccCccchHHHHHHHHHHhc----C-HHHHHHHHHHHHHHHHHhCCCCChhhhcccCC-cCHHHHHHHHHHHHH
Confidence 112347789888888876432 2 34445 89999999998742 2244433322 234555555566644
No 60
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=93.03 E-value=0.86 Score=39.11 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHH-hcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHH
Q 028222 49 PERFYDAANFML-YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNN 127 (212)
Q Consensus 49 ~~~i~~av~~Ll-~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~ 127 (212)
...+++.+.|-+ ..+.++|||..+-..... . .+ .+ .-.+..++..|-+++...... ..++..+
T Consensus 12 ~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~-~---~~---~~------~k~l~~n~r~i~~~a~a~~~~---g~~~~l~ 75 (402)
T 3gt5_A 12 RTHISDTMAFYHPRCIDSAGGFFHYFRDDGS-I---YN---AT------HRHLVSSTRFVFNYAMAYLQF---GTAEYLD 75 (402)
T ss_dssp HHHHHHHHHHHTTTTBCTTSSBCCEECTTSC-E---EE---SS------EEEHHHHHHHHHHHHHHHHHH---CCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCeeeEECCCCC-C---CC---CC------chhHHHHHHHHHHHHHHHHhh---CChHHHH
Confidence 355678888754 556688999643211100 0 00 00 011234777888887765432 2355678
Q ss_pred HHHHHHHHHHhc-cccC-CCcCCCC-------ccchhhHHHHHHHHHHHcCcC--CCChHHHHHHHHHHHhcc-cC-CCc
Q 028222 128 FITNGVKFTEDS-QKLD-GSWYGTW-------GVCFIYSTWWAISGLVAAEKT--YSNCLAIRKATDFLLNIQ-CD-DGG 194 (212)
Q Consensus 128 ~i~ra~~~L~~~-Q~~d-G~w~g~~-------~~~~~~~T~~al~aL~~~g~~--~~~~~~i~~a~~~Ll~~Q-~~-dGg 194 (212)
.++++++||++. .+++ |+|.-.. .....|..++++.||+.+... +.....+++..++|++.- .+ .|+
T Consensus 76 ~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~ 155 (402)
T 3gt5_A 76 AVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGL 155 (402)
T ss_dssp HHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred HHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCCcCCC
Confidence 899999999886 4456 8885332 113467888998888864222 113456666777887763 33 455
Q ss_pred cc
Q 028222 195 WG 196 (212)
Q Consensus 195 w~ 196 (212)
+.
T Consensus 156 ~~ 157 (402)
T 3gt5_A 156 YK 157 (402)
T ss_dssp EC
T ss_pred ch
Confidence 54
No 61
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=92.10 E-value=0.89 Score=40.46 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=77.7
Q ss_pred cccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCC--CcHHHHHHHHHH---HHhcccCCCceee----------cCCCC
Q 028222 12 FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK--MEPERFYDAANF---MLYIQSKTGGITG----------WEPAG 76 (212)
Q Consensus 12 ~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~--~~~~~i~~av~~---Ll~~Q~~dGgw~~----------~~~~~ 76 (212)
++..++++..+-|.+.++.+|+.+... +.. ...+.+++-++| |....+++|.|.. |..+.
T Consensus 58 tsnpDYrY~W~RDaa~t~~aL~~~g~~-----~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG 132 (492)
T 2fba_A 58 TSNPDYYYQWTRDSAITFLTVLSELED-----NNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDG 132 (492)
T ss_dssp BSSSBCCSEEHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTS
T ss_pred CCCCCCeEEccchHHHHHHHHHHhCcc-----cccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCC
Confidence 344567777788999999999887531 000 014556777775 4444588998862 21111
Q ss_pred ChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCC--ccc--------------hhHH-HHHHHHHHHHHHhc
Q 028222 77 APSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYP--KHK--------------KNEV-NNFITNGVKFTEDS 139 (212)
Q Consensus 77 ~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~--~~~--------------~~~i-~~~i~ra~~~L~~~ 139 (212)
.. |.. .+...-.|.++..+.+|..+..... +.. ...+ .+.|++.++||.+.
T Consensus 133 ~~-----------~~~-~w~~~Q~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~ 200 (492)
T 2fba_A 133 SA-----------YTG-AWGRPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGY 200 (492)
T ss_dssp CB-----------CCS-CCSCCBTTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHH
T ss_pred Cc-----------CCc-ccCCccccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHh
Confidence 00 000 0122334678888877765432110 100 0233 36899999999988
Q ss_pred cccC--CCcCCCCccchhhHHHHHHHHHHHc
Q 028222 140 QKLD--GSWYGTWGVCFIYSTWWAISGLVAA 168 (212)
Q Consensus 140 Q~~d--G~w~g~~~~~~~~~T~~al~aL~~~ 168 (212)
-++. |-|..+.+ .+.+..+.+..||.++
T Consensus 201 w~~pd~dlWEer~g-~~~~T~~~~~~AL~~a 230 (492)
T 2fba_A 201 WDSTGFDLWEENQG-RHFFTSLVQQKALAYA 230 (492)
T ss_dssp TTSCEECTTSCCEE-CCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcCccCC-CChHHHHHHHHHHHHH
Confidence 6543 55533322 3566666677777543
No 62
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=91.59 E-value=1.6 Score=37.20 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=72.0
Q ss_pred HHHHHHHHHHH-hccc-CCCceeec-CCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHH
Q 028222 50 ERFYDAANFML-YIQS-KTGGITGW-EPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 126 (212)
Q Consensus 50 ~~i~~av~~Ll-~~Q~-~dGgw~~~-~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~ 126 (212)
..+++++.+.. .... ..|||..+ ..+... .| .+-.+...+..|.+++......+....+++.
T Consensus 17 ~~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~-----~~----------~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l 81 (402)
T 1fp3_A 17 QELDRVMAFWLEHSHDREHGGFFTCLGRDGRV-----YD----------DLKYVWLQGRQVWMYCRLYRKLERFHRPELL 81 (402)
T ss_dssp HHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCB-----SC----------CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHH
T ss_pred HHHHHHHHHhhccCCCCCCCCEeeEECCCCCC-----CC----------CccchhhhHHHHHHHHHHHHHhcccCCHHHH
Confidence 34678888888 4554 47888532 221110 00 0112334667777777655432001235567
Q ss_pred HHHHHHHHHHHhc-cccCC--CcCCCC----c----cchhhHHHHHHHHHHHcCc---CCCChHHHHHHHHHHHhcc--c
Q 028222 127 NFITNGVKFTEDS-QKLDG--SWYGTW----G----VCFIYSTWWAISGLVAAEK---TYSNCLAIRKATDFLLNIQ--C 190 (212)
Q Consensus 127 ~~i~ra~~~L~~~-Q~~dG--~w~g~~----~----~~~~~~T~~al~aL~~~g~---~~~~~~~i~~a~~~Ll~~Q--~ 190 (212)
+.++++++||++. ++++| +|.-.. . ....|.-++.+.++..+-. .....+.+++.++++++.- .
T Consensus 82 ~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~ 161 (402)
T 1fp3_A 82 DAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRED 161 (402)
T ss_dssp HHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999998 56565 675321 1 1234566777777765422 1112345556666776654 3
Q ss_pred CCCcc
Q 028222 191 DDGGW 195 (212)
Q Consensus 191 ~dGgw 195 (212)
+.|.|
T Consensus 162 ~~G~f 166 (402)
T 1fp3_A 162 PSGLG 166 (402)
T ss_dssp GGGGC
T ss_pred CCccc
Confidence 45665
No 63
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=91.45 E-value=0.47 Score=43.33 Aligned_cols=138 Identities=11% Similarity=-0.008 Sum_probs=72.4
Q ss_pred cccCCCCCCCCccHHHHHHHHHHhh-cCCCCCcCCCCcHHHHHHHHHHHHh---cc---cCCCceee----cCCCCChhh
Q 028222 12 FSDKDHGLPVSDCSSESFVCCLHLS-TMPPEIVGEKMEPERFYDAANFMLY---IQ---SKTGGITG----WEPAGAPSW 80 (212)
Q Consensus 12 ~~~~~~~~~~~d~Ta~~l~al~~~~-~~~~~~~~~~~~~~~i~~av~~Ll~---~Q---~~dGgw~~----~~~~~~~~~ 80 (212)
++.+++++.-+-|.+.+++||+... .. | ..+..++..+||.. .| ++||.|.. .++.- .
T Consensus 42 ts~pDYrY~W~RDaa~t~~aL~~~~~~~-----G---~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~---~ 110 (599)
T 2vn4_A 42 TIDPDYYYMWTRDSALVFKNLIDRFTET-----Y---DAGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKF---E 110 (599)
T ss_dssp CSSSCCCSEEHHHHHHHHHHHHHHHHHS-----B---CHHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEE---C
T ss_pred CCCCCCeEEchhhHHHHHHHHHHHHHhC-----C---CHHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEE---e
Confidence 3445777778889999999998321 10 1 24667788999974 67 89999841 11100 0
Q ss_pred hhhcCcccccchhhcccCccch-----HHHHHHHHHHHHhhCCc-cchhHHHHHHHHHHHHHHhccccC--CCcCCCCcc
Q 028222 81 IELLNPIEFLDEVIIEHDYVEC-----TASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGV 152 (212)
Q Consensus 81 ~~~l~~~e~~~~~~~d~~~~~~-----Ta~al~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~~d--G~w~g~~~~ 152 (212)
+.. ..|.. .+...-.|. ++.++.++. +...... .-...+-+.|+++++||.+..++. |-|..+. .
T Consensus 111 ldG----~~~~~-~w~~~Q~D~~glr~~~~~~~~~~-~~~~g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer~-g 183 (599)
T 2vn4_A 111 LTL----KPFTG-NWGRPQRDGPALRAIALIGYSKW-LINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVN-G 183 (599)
T ss_dssp TTS----CBCCS-CCSCCCTHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCCE-E
T ss_pred cCC----ccccC-cCCCeeccccchhHHHHHHHHHH-HHHhCCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeecC-C
Confidence 000 00100 001112223 444443333 2111110 011124478999999999997654 5553332 2
Q ss_pred chhhHHHHHHHHHHH
Q 028222 153 CFIYSTWWAISGLVA 167 (212)
Q Consensus 153 ~~~~~T~~al~aL~~ 167 (212)
.+.+..+.+..||.+
T Consensus 184 ~~~~T~~~~~~aL~~ 198 (599)
T 2vn4_A 184 SSFFTVANQHRALVE 198 (599)
T ss_dssp EEHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 355666666677744
No 64
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=90.82 E-value=0.54 Score=43.49 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=71.0
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecC-CCCChhhhhhcCcccccchhhcc
Q 028222 18 GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWE-PAGAPSWIELLNPIEFLDEVIIE 96 (212)
Q Consensus 18 ~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~-~~~~~~~~~~l~~~e~~~~~~~d 96 (212)
.+.-.-|.+.++++|+.++. .+..++.++||.+.|+++|+|.... .+..+. +.
T Consensus 338 ~~~W~RD~~~~~~al~~~G~-----------~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~---------------w~ 391 (684)
T 1lf6_A 338 HLVWSRDLYHVANAFIAAGD-----------VDSANRSLDYLAKVVKDNGMIPQNTWISGKPY---------------WT 391 (684)
T ss_dssp GSBCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBC---------------CC
T ss_pred EEEeccHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhcCCCCCcccceeCCCCcc---------------cC
Confidence 34556789999999998742 4678899999999999999985211 110000 11
Q ss_pred cCccchHHHHHHHHHHHHhhCCccchhHHHHH-HHHHHHHHHhcccc--CCCcCCCCccchhhHHHHHHHHHHH
Q 028222 97 HDYVECTASALKAMTLFQKLYPKHKKNEVNNF-ITNGVKFTEDSQKL--DGSWYGTWGVCFIYSTWWAISGLVA 167 (212)
Q Consensus 97 ~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~-i~ra~~~L~~~Q~~--dG~w~g~~~~~~~~~T~~al~aL~~ 167 (212)
..-.|.++..|.++..+... . +-+. ++++++|+.+.-.. .|-|....+. ..+..+++..||.+
T Consensus 392 ~~Q~D~~g~~l~~~~~~~~~----g---~~~~~v~~al~~i~~~~~~~~~g~WE~~~g~-~~~t~~~~~~aL~~ 457 (684)
T 1lf6_A 392 GIQLDEQADPIILSYRLKRY----D---LYDSLVKPLADFIIKIGPKTGQERWEEIGGY-SPATMAAEVAGLTC 457 (684)
T ss_dssp CCCHHHHHHHHHHHHHTTCG----G---GTTTTHHHHHHHHHHHCSSBSSCTTSSCCBB-CHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHc----C---chHHHHHHHHHHHHHhCCCCCcccccccCCc-CHHHHHHHHHHHHH
Confidence 22356788888776644321 1 3456 99999999987533 3445332222 23444455555544
No 65
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=90.56 E-value=1.4 Score=40.67 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHhcccC--CCceeecCCCCChhhhhhcCcccccch-hhcccCc--cchHHHHHHHHHHHHhhCCccch
Q 028222 48 EPERFYDAANFMLYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDE-VIIEHDY--VECTASALKAMTLFQKLYPKHKK 122 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~-~~~d~~~--~~~Ta~al~aL~~~~~~~~~~~~ 122 (212)
..+.+.+++.-|+.++.+ .|++-..... .|-+. .++ ...|+.. +-..+.++++|..++.
T Consensus 294 ~~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~---~~~e~------~~~~~~~dY~~~W~RD~~~~~~al~~~G~------- 357 (684)
T 1lf6_A 294 ANSLYYNSMMILKASEDKTNKGAYIASLSI---PWGDG------QRDDNTGGYHLVWSRDLYHVANAFIAAGD------- 357 (684)
T ss_dssp CCHHHHHHHHHHHTTBCSSSTTCBCSCSSC---TTGGG------SBSBSCCGGGSBCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHhccCCCCCccEEeecCC---CCccc------cCCCCCCCCEEEeccHHHHHHHHHHHcCC-------
Confidence 356778888888877763 6776321110 00000 000 1112222 1235566677776642
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcCCC--------CccchhhHHHHHHHHHHHcCcCCCChHH-HHHHHHHHHhccc--C
Q 028222 123 NEVNNFITNGVKFTEDSQKLDGSWYGT--------WGVCFIYSTWWAISGLVAAEKTYSNCLA-IRKATDFLLNIQC--D 191 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g~--------~~~~~~~~T~~al~aL~~~g~~~~~~~~-i~~a~~~Ll~~Q~--~ 191 (212)
.+..++.++||.+.|.++|+|... |+......++..+.++..+.... ..+. ++++++|+.+.-. .
T Consensus 358 ---~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g-~~~~~v~~al~~i~~~~~~~~ 433 (684)
T 1lf6_A 358 ---VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD-LYDSLVKPLADFIIKIGPKTG 433 (684)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG-GTTTTHHHHHHHHHHHCSSBS
T ss_pred ---HHHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC-chHHHHHHHHHHHHHhCCCCC
Confidence 145788999999999999988532 33223456666666665544332 4667 9999999998643 2
Q ss_pred CCcccc
Q 028222 192 DGGWGE 197 (212)
Q Consensus 192 dGgw~~ 197 (212)
.|-|..
T Consensus 434 ~g~WE~ 439 (684)
T 1lf6_A 434 QERWEE 439 (684)
T ss_dssp SCTTSS
T ss_pred cccccc
Confidence 344554
No 66
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=86.80 E-value=3 Score=35.69 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCC-CceeecCCCCChhhhhhcCcccccchhhc-ccCcc
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKT-GGITGWEPAGAPSWIELLNPIEFLDEVII-EHDYV 100 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~d-Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~-d~~~~ 100 (212)
+++..|.++..+... .+.+...+.++++++||++. .+++ |||..-..+ . ... ....+
T Consensus 53 ~n~r~i~~~a~a~~~----~g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~d--G--------------~~~~~~~~l 112 (402)
T 3gt5_A 53 SSTRFVFNYAMAYLQ----FGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCD--D--------------RVEDDTNHC 112 (402)
T ss_dssp HHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEET--T--------------EEEECCEEH
T ss_pred HHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeC--C--------------CCCcCCcch
Confidence 568888888775331 13455678899999999874 5556 888622110 0 000 11234
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc-ccC-CCcC----CCCcc---chhhHHHHHHHHHHHcCc-
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLD-GSWY----GTWGV---CFIYSTWWAISGLVAAEK- 170 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q-~~d-G~w~----g~~~~---~~~~~T~~al~aL~~~g~- 170 (212)
..-+.+|.+|+.+... ..++..+.+.+..++|.+.. .++ |++. ..|.. ......+.++.+|.++..
T Consensus 113 yd~Af~i~al~~~~~t----gd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~~~~~~~~n~~m~l~eall~L~~~ 188 (402)
T 3gt5_A 113 YGLAFVMLAYSCGLKV----GIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEA 188 (402)
T ss_dssp HHHHHHHHHHHHHHHT----TCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCCBCSCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4567888888875432 12334567788888998874 444 5443 12211 112233444445544422
Q ss_pred --CCCChHHHHHHHHHHHhc
Q 028222 171 --TYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 171 --~~~~~~~i~~a~~~Ll~~ 188 (212)
+....+.+++.++.++..
T Consensus 189 tgd~~~~~~a~~l~~~~~~~ 208 (402)
T 3gt5_A 189 SGEQRYLERALVLADRITRR 208 (402)
T ss_dssp HCCHHHHHHHHHHHHHHHTH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 211244555666666654
No 67
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=86.06 E-value=0.8 Score=28.76 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCC
Q 028222 158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD 192 (212)
Q Consensus 158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d 192 (212)
.-.|..||.+.+.. ++||++||.++..+.
T Consensus 33 ~~qA~kALKat~~N------vErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 33 YECVLRAMKKKGEN------IEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHHCSC------HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCCC
Confidence 34577888887654 899999999997764
No 68
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=85.37 E-value=6.3 Score=35.79 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccc--cc--------hhhcccCccchHHHHHHHHHHHHhh--
Q 028222 49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEF--LD--------EVIIEHDYVECTASALKAMTLFQKL-- 116 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~--~~--------~~~~d~~~~~~Ta~al~aL~~~~~~-- 116 (212)
.+.++=++|||+++|.++|++-.-..+. |-+...+.++ +. ...++. ...++..+.+|+.....
T Consensus 193 ldE~rWg~D~llkm~~~~g~~y~qVgd~---W~~d~~~R~~~~~~~~~~~~~~~y~~~~--~~~agl~aAALA~Asrvf~ 267 (586)
T 3h7l_A 193 IEEALFGADFLVRMQNEKGFFYMTVFDK---WSKDTAQREICAYETQLGHKFDDYQAGF--RQGGGVAIAALAAASRLGV 267 (586)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBBCEEECT---TCCCGGGCEEEEEETTTTEEESCCBCCG--GGTHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEecCC---CCCCCCccccccccCCCCCCCcceecCC--CCcHHHHHHHHHHHhcccC
Confidence 3566778899999999999874222211 2110000110 00 001111 11244556677766554
Q ss_pred CCccchhHHHHHHHHHHHHHHhcc
Q 028222 117 YPKHKKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 117 ~~~~~~~~i~~~i~ra~~~L~~~Q 140 (212)
++.++.+++..+.+++.+|+.+..
T Consensus 268 d~~~~a~~~L~aA~~a~~fa~~~~ 291 (586)
T 3h7l_A 268 HGEYDQQKYRNAAENGYWHLKEHN 291 (586)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHHHhcC
Confidence 444545678888999999998874
No 69
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=84.90 E-value=1.1 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=22.6
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCC
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG 193 (212)
.++.||.+.+-+ |++|++||++.+...|
T Consensus 36 an~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 36 ANLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 357888888754 8999999999987665
No 70
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=84.20 E-value=2.5 Score=37.31 Aligned_cols=138 Identities=9% Similarity=-0.030 Sum_probs=68.7
Q ss_pred cccCCCCCCCCccHHHHHHHHH---HhhcCCCCCcCCCCcHHHHHHHHHHHHh---cc---cCCCceeecCCCCChhhhh
Q 028222 12 FSDKDHGLPVSDCSSESFVCCL---HLSTMPPEIVGEKMEPERFYDAANFMLY---IQ---SKTGGITGWEPAGAPSWIE 82 (212)
Q Consensus 12 ~~~~~~~~~~~d~Ta~~l~al~---~~~~~~~~~~~~~~~~~~i~~av~~Ll~---~Q---~~dGgw~~~~~~~~~~~~~ 82 (212)
++..++++..+-|.+.++.+|+ ..+. .+..++..+||.. .| +++|.|..-..++....+.
T Consensus 43 tsnpDYrY~W~RDaa~t~~aL~~~~~~G~-----------~~~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vd 111 (472)
T 1gai_A 43 TDNPDYFYTWTRDSGLVIKTLVDLFRNGD-----------TDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVD 111 (472)
T ss_dssp BSSSBCCSEEHHHHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTT
T ss_pred CCCCCCeEEchhhHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccC
Confidence 3445677778889999999998 4421 2334566666665 44 7889885100000000000
Q ss_pred hcCcccccchhhcccCccch-----HHHHHHHHHHHHhhCCcc-chhHHHHHHHHHHHHHHhccccC--CCcCCCCccch
Q 028222 83 LLNPIEFLDEVIIEHDYVEC-----TASALKAMTLFQKLYPKH-KKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGVCF 154 (212)
Q Consensus 83 ~l~~~e~~~~~~~d~~~~~~-----Ta~al~aL~~~~~~~~~~-~~~~i~~~i~ra~~~L~~~Q~~d--G~w~g~~~~~~ 154 (212)
. +.|.. .+...-.|. ++.++.++. +....... -...+-+.|++.++||.+.-++. |-|..+. ..+
T Consensus 112 G----~~~~~-~w~~~Q~D~~g~ra~~~~~~~~~-l~~~g~~~~~~~~~w~~i~~~l~~v~~~w~~pd~dlWEer~-g~~ 184 (472)
T 1gai_A 112 E----TAYTG-SWGRPQRDGPALRATAMIGFGQW-LLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEVN-GSS 184 (472)
T ss_dssp S----CBCCS-CCSCCCTHHHHHHHHHHHHHHHH-HHHTTCHHHHHHTHHHHHHHHHHHHHHHTTSCEECTTSCCE-EEE
T ss_pred C----CccCC-cCCCccccccchhHHHHHHHHHH-HHHcCCccccchhHHHHHHHHHHHHHHhcCCCCCCCCcccC-CCC
Confidence 0 00000 001112233 444444433 22211100 01124467999999998886543 5553332 235
Q ss_pred hhHHHHHHHHHHH
Q 028222 155 IYSTWWAISGLVA 167 (212)
Q Consensus 155 ~~~T~~al~aL~~ 167 (212)
.+..+.+..||.+
T Consensus 185 ~~T~~~~~~AL~~ 197 (472)
T 1gai_A 185 FFTIAVQHRALVE 197 (472)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666677754
No 71
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=82.70 E-value=7.7 Score=32.63 Aligned_cols=146 Identities=13% Similarity=0.055 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHH-HhcccC--CCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222 22 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFM-LYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD 98 (212)
Q Consensus 22 ~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~L-l~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~ 98 (212)
.||-+...++++.+-+. .+.+..-+...+..++| ...-++ .||+. +.... +.+.
T Consensus 91 ~DD~a~~~la~~~aye~----t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~-W~~~~-----------~~~k------- 147 (349)
T 3k7x_A 91 YDDMLWNALAAYRLYKA----TGKSIYLEDAQLVWQDLVDTGWNDIMGGGFA-WRRPQ-----------MYYK------- 147 (349)
T ss_dssp HHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHTBCSGGGSCBE-EETTE-----------EEEE-------
T ss_pred ccHHHHHHHHHHHHHHH----HCCchHHHHHHHHHHHHHHhCCCCCCCCceE-ecCCC-----------cccc-------
Confidence 57888877777775442 13344555666777888 554344 47775 22110 0011
Q ss_pred ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc-cccCCCcCCC----C-c-----cchhhHHHHHHHHHHH
Q 028222 99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS-QKLDGSWYGT----W-G-----VCFIYSTWWAISGLVA 167 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~-Q~~dG~w~g~----~-~-----~~~~~~T~~al~aL~~ 167 (212)
.+-..+..+..|+++..... ++++.+..++..+|+.+. .+++|.+... . + ...+|+.+..|.++..
T Consensus 148 naisN~~~~~~la~l~~~tg---d~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~ 224 (349)
T 3k7x_A 148 NTPVNAPFIILSCWLYNELN---ETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLE 224 (349)
T ss_dssp EHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHH
Confidence 11135666777776655432 245677889999999875 3556555321 1 0 1356888888888876
Q ss_pred cCc-C--CCChHHHHHHHHHHHhcccCCC
Q 028222 168 AEK-T--YSNCLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 168 ~g~-~--~~~~~~i~~a~~~Ll~~Q~~dG 193 (212)
+-. . ....+.+++.++.+++.--++|
T Consensus 225 LY~~T~d~~yl~~a~~l~~~~~~~f~~~g 253 (349)
T 3k7x_A 225 LYRITKEAIYLDTANKTAAISLKELTEDG 253 (349)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHEETT
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHHhccCC
Confidence 522 1 1123344445555555433444
No 72
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=82.69 E-value=12 Score=32.06 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec
Q 028222 25 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW 72 (212)
Q Consensus 25 Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~ 72 (212)
.+-.+.+|+.+.+. .+.+...+.++++++|+++.+.++|.|+..
T Consensus 233 ~aGI~~~Ll~~~~~----~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~ 276 (411)
T 3e6u_A 233 LAGIYYYLMQPSLQ----VSQGKLHSLVKPSVDYVCQLKFPSGNYPPC 276 (411)
T ss_dssp HHHHHHHHTCGGGC----CCHHHHHHTHHHHHHHHHHTCCTTSCCCSB
T ss_pred HHHHHHHHHHHHhh----cChHHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 34445555544321 123334567999999999999999999854
No 73
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=77.08 E-value=26 Score=29.93 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-C-CCcCCCC----c---cchhhHHHHHHHHHHHc---
Q 028222 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-D-GSWYGTW----G---VCFIYSTWWAISGLVAA--- 168 (212)
Q Consensus 101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-d-G~w~g~~----~---~~~~~~T~~al~aL~~~--- 168 (212)
..++..|.+++..... ..++..+.++++++||++.... + |+|.-.. . ....|.-++++.+|+..
T Consensus 51 ~~nar~i~~~a~a~~~----g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~t 126 (421)
T 2zbl_A 51 WITARMLHVYSVAASM----GRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTT 126 (421)
T ss_dssp HHHHHHHHHHHHHHHT----TCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHh
Confidence 3577778888776542 1244567899999999988543 3 8886321 1 13457778888888763
Q ss_pred CcCCCChHHHHHHHHHHHhccc-C-CCccccc
Q 028222 169 EKTYSNCLAIRKATDFLLNIQC-D-DGGWGES 198 (212)
Q Consensus 169 g~~~~~~~~i~~a~~~Ll~~Q~-~-dGgw~~~ 198 (212)
+.+ ...+.+++.+++|++.-. + +|||-..
T Consensus 127 g~~-~~l~~a~~~~~~l~~~~~d~~~Ggf~~~ 157 (421)
T 2zbl_A 127 GHP-EARKLLDYTIEVIEKYFWSEEEQMCLES 157 (421)
T ss_dssp TCT-THHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred CCc-cHHHHHHHHHHHHHHHhccCCCCCeeee
Confidence 222 235677778888887543 3 7887654
No 74
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=76.11 E-value=11 Score=34.28 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCCcc------chhHHHHHHHHHHHHHHhccccCCCcCC----CCccc-------------------
Q 028222 103 TASALKAMTLFQKLYPKH------KKNEVNNFITNGVKFTEDSQKLDGSWYG----TWGVC------------------- 153 (212)
Q Consensus 103 Ta~al~aL~~~~~~~~~~------~~~~i~~~i~ra~~~L~~~Q~~dG~w~g----~~~~~------------------- 153 (212)
|+.++-.|..+.+..+.. ..+.+.++++=+++||+++|.++|.++. .|...
T Consensus 164 ~~~~~w~ll~~~~~~~~~~~~~~~~~~~lldE~rWg~D~llkm~~~~g~~y~qVgd~W~~d~~~R~~~~~~~~~~~~~~~ 243 (586)
T 3h7l_A 164 TPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEALFGADFLVRMQNEKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDD 243 (586)
T ss_dssp HHHHHHHHHHHHHHSTTSSSSCHHHHHHHHHHHHHHHHHHHHTBCTTSCBBCEEECTTCCCGGGCEEEEEETTTTEEESC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccchHHHHHHHHHHHHHHHhcccCCCeEEEEecCCCCCCCCccccccccCCCCCCCcc
Confidence 455555555554443321 1356778888899999999999998753 23210
Q ss_pred ----hhhHHHHHHHHHHHcCcC---CCC-----hHHHHHHHHHHHhcc
Q 028222 154 ----FIYSTWWAISGLVAAEKT---YSN-----CLAIRKATDFLLNIQ 189 (212)
Q Consensus 154 ----~~~~T~~al~aL~~~g~~---~~~-----~~~i~~a~~~Ll~~Q 189 (212)
..-+.++.+.||+++.+. ... -...+++.+|+.+..
T Consensus 244 y~~~~~~~agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~~~ 291 (586)
T 3h7l_A 244 YQAGFRQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHN 291 (586)
T ss_dssp CBCCGGGTHHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcHHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHhcC
Confidence 012345566777766554 111 235567788887764
No 75
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=75.43 E-value=12 Score=31.84 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=75.6
Q ss_pred CCCCcHHHHHHHHHHHHhcccCCCce-eecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccch
Q 028222 44 GEKMEPERFYDAANFMLYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKK 122 (212)
Q Consensus 44 ~~~~~~~~i~~av~~Ll~~Q~~dGgw-~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~ 122 (212)
|++...+.+.++.++|...=++.+|+ ..+..-....+ .+ .....|-+-|.+|...+... .+
T Consensus 105 g~~~~~~~~~~aA~~L~~r~~~~~g~i~sw~~~~~~~~---------~~------~~iID~mmni~~L~~A~~~~---gd 166 (377)
T 2ahf_A 105 KDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPEN---------GG------RIIIDCLLNLPLLLWAGEQT---GD 166 (377)
T ss_dssp CCHHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTTT---------TT------EEEGGGGGGHHHHHHHHHHH---CC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCeEEeccCCCCCCC---------Cc------eEEechHHHHHHHHHHHHHh---CC
Confidence 44566788999999999887777554 43321000000 00 01112334477777665442 22
Q ss_pred hHHHHHHHHHHHHHHhcc-ccCCCcCC---------CC-------cc----chhhHHHHHHHHHHHcCcC---CCChHHH
Q 028222 123 NEVNNFITNGVKFTEDSQ-KLDGSWYG---------TW-------GV----CFIYSTWWAISGLVAAEKT---YSNCLAI 178 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q-~~dG~w~g---------~~-------~~----~~~~~T~~al~aL~~~g~~---~~~~~~i 178 (212)
+++.+...+.++++++.+ ++||+..- .. |- +=..+.++++.+|..+-.. ...-+..
T Consensus 167 ~~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A 246 (377)
T 2ahf_A 167 PEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETA 246 (377)
T ss_dssp THHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHH
Confidence 456677888888988876 45565421 11 00 0123567888888765221 1123356
Q ss_pred HHHHHHHHhcccCCCc
Q 028222 179 RKATDFLLNIQCDDGG 194 (212)
Q Consensus 179 ~~a~~~Ll~~Q~~dGg 194 (212)
++..++++++..+||+
T Consensus 247 ~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 247 KRMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHhhHHhCC
Confidence 6777899999877787
No 76
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.11 E-value=3.5 Score=26.83 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCC
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG 193 (212)
.++.||.+.+-+ +++|++||++.+.++-
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCCCC
Confidence 467888887754 8999999999876653
No 77
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=74.63 E-value=7 Score=34.04 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHH
Q 028222 26 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS 105 (212)
Q Consensus 26 a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~ 105 (212)
+..|.|++...+. ++++.....+++++.+++|.+..+-.|-|..|-...+.. .+| |...--.-+.|| |+.
T Consensus 68 GfgL~A~~vA~e~--G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~---~lp----f~~~d~~~StVD-Ta~ 137 (430)
T 3eu8_A 68 GFGIMAILAGIDR--GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGH---VQP----FGQKDNGGDLVE-TAF 137 (430)
T ss_dssp HHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCC---BCC----BTTTBCSEEHHH-HHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCC---cCC----CCcccCcccHHH-HHH
Confidence 5666666665442 344444456789999999999988899998664333321 122 211000112343 777
Q ss_pred HHHHHHHHHh
Q 028222 106 ALKAMTLFQK 115 (212)
Q Consensus 106 al~aL~~~~~ 115 (212)
.+.+|..+.+
T Consensus 138 L~~GlL~ar~ 147 (430)
T 3eu8_A 138 LMQGLLAVHQ 147 (430)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 78
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=74.55 E-value=37 Score=28.89 Aligned_cols=142 Identities=8% Similarity=-0.036 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCC-CceeecCCCCChhhhhhcCcccccchhhcccCccc
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKT-GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVE 101 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~d-Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~ 101 (212)
+++..+.++..+... |.+...+.++++++||++.- ..+ |||. +..+... .++ +.-...
T Consensus 52 ~nar~i~~~a~a~~~-----g~~~~l~~A~~~~~fl~~~~~D~~~GG~~-~s~d~dg-----~~~---------~~k~ly 111 (421)
T 2zbl_A 52 ITARMLHVYSVAASM-----GRPGAYDLVDHGIKAMNGALRDKKYGGWY-ACVNDQG-----VVD---------ASKQGY 111 (421)
T ss_dssp HHHHHHHHHHHHHHT-----TCTTHHHHHHHHHHHHTTTTBCTTTSSBC-SEEETTE-----EEE---------CCEEHH
T ss_pred HHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHHHHhccCcCCCeEE-EEeCCCC-----CcC---------CchhHH
Confidence 667778788776432 45667789999999999763 333 8886 3211110 000 111223
Q ss_pred hHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc-cc-CCCcCCCCc--------cchhhHHHHHHHHHHHcCcC
Q 028222 102 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KL-DGSWYGTWG--------VCFIYSTWWAISGLVAAEKT 171 (212)
Q Consensus 102 ~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q-~~-dG~w~g~~~--------~~~~~~T~~al~aL~~~g~~ 171 (212)
.-+.++.+|+.+ ... ..++..+.+.+.+++|.+.. .+ +|+|+.... .....+.+.++.+|.++...
T Consensus 112 d~Af~i~al~~~-~~t---g~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~ 187 (421)
T 2zbl_A 112 QHFFALLGAASA-VTT---GHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDV 187 (421)
T ss_dssp HHHHHHHHHHHH-HTT---TCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHh---CCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHh
Confidence 356777777773 321 12334567788899998765 34 687754321 01122333445666554332
Q ss_pred CCC---hHHHHHHHHHHHhcc
Q 028222 172 YSN---CLAIRKATDFLLNIQ 189 (212)
Q Consensus 172 ~~~---~~~i~~a~~~Ll~~Q 189 (212)
-.+ ....++.++.+....
T Consensus 188 tgd~~~~~~A~~~~~~~~~~~ 208 (421)
T 2zbl_A 188 THDKKWLDRALRIASVIIHDV 208 (421)
T ss_dssp TCCTHHHHHHHHHHHHHCCCC
T ss_pred hCCHHHHHHHHHHHHHHHHHh
Confidence 112 234456667766544
No 79
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.52 E-value=3.1 Score=26.04 Aligned_cols=17 Identities=6% Similarity=-0.068 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhccccCC
Q 028222 128 FITNGVKFTEDSQKLDG 144 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~dG 144 (212)
.++||++||.++.+|..
T Consensus 46 NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 46 NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp CHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHhCCCCCC
Confidence 38999999999988753
No 80
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=68.70 E-value=5.6 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD 192 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d 192 (212)
..|+.||.+.+.. +++|++||++.|.++
T Consensus 44 ~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 44 TQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 3477888887653 899999999988764
No 81
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.53 E-value=6 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
..|..||.+.+.. .+++|++||++++.+
T Consensus 34 ~~a~~AL~~t~~~-----nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGGR-----SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTTS-----CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHhCCCC
Confidence 3466777776542 389999999998864
No 82
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.51 E-value=5.5 Score=24.13 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=19.5
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
.++.||.+.+-+ +++|++||++....
T Consensus 26 ~n~~AL~~~~Gd------v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 26 ANLQALIATGGD------VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 356778777654 89999999987643
No 83
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=66.62 E-value=45 Score=28.56 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchh
Q 028222 44 GEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN 123 (212)
Q Consensus 44 ~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~ 123 (212)
|++...+.+.++.++|...=++.||+-........ +. +...+..+.+-|.+|...+... .++
T Consensus 131 g~~~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~-------~~--------~~~~iID~~mni~~L~~A~~~~---gd~ 192 (397)
T 2zzr_A 131 GDVKALEATIKAADKLMERYQEKGGFIQAWGELGY-------KE--------HYRLIIDCLLNIQLLFFAYEQT---GDE 192 (397)
T ss_dssp CCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTC-------GG--------GCEEETTHHHHTHHHHHHHHHH---CCH
T ss_pred CCHHHHHHHHHHHHHHHHHhCcCCCEEEecccCCC-------CC--------CCceeechHhHHHHHHHHHHHh---CCH
Confidence 44556788999999999877888776432211000 00 0111223555677787766542 234
Q ss_pred HHHHHHHHHHHHHHhcc-ccCCCcC---------CCC-------ccch----hhHHHHHHHHHHHcCc---CCCChHHHH
Q 028222 124 EVNNFITNGVKFTEDSQ-KLDGSWY---------GTW-------GVCF----IYSTWWAISGLVAAEK---TYSNCLAIR 179 (212)
Q Consensus 124 ~i~~~i~ra~~~L~~~Q-~~dG~w~---------g~~-------~~~~----~~~T~~al~aL~~~g~---~~~~~~~i~ 179 (212)
++.+...+..+++++.. ++||+-. |.+ |-.. ..+.++++.+|..+-. +...-+..+
T Consensus 193 ~y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~ 272 (397)
T 2zzr_A 193 KYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFK 272 (397)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 56677777888887776 4445432 111 0001 2366888888877522 111234455
Q ss_pred HHHHHHHhcccCCCc
Q 028222 180 KATDFLLNIQCDDGG 194 (212)
Q Consensus 180 ~a~~~Ll~~Q~~dGg 194 (212)
+..++++++-.+||+
T Consensus 273 ~la~~~l~~~~~d~~ 287 (397)
T 2zzr_A 273 GMTNYFLNRLPEDKV 287 (397)
T ss_dssp HHHHHHHHTCCTTSC
T ss_pred HHHHHHHHhhHHhCC
Confidence 666888887656676
No 84
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=66.27 E-value=7.7 Score=25.01 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
...|..||.+.+. .+++|++||++++.+
T Consensus 43 ~~~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 43 EDVARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 3356778887664 389999999998864
No 85
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=66.21 E-value=5.8 Score=23.82 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q 189 (212)
..++.||.+.+.+ +++|++||++.+
T Consensus 27 ~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 27 EANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 3467888887653 899999999875
No 86
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=66.03 E-value=28 Score=29.21 Aligned_cols=124 Identities=8% Similarity=-0.081 Sum_probs=64.7
Q ss_pred CCCCcc-ccccCCCCCCC-----CccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCCC--ceeecCCC
Q 028222 5 ISKGGW-TFSDKDHGLPV-----SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTG--GITGWEPA 75 (212)
Q Consensus 5 ~~~Ggw-~~~~~~~~~~~-----~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dG--gw~~~~~~ 75 (212)
...||| ++-+.+. .|. ..+++..|.++..+...-+ -.+.+...+.++++++||+.. +.++| ||. +..+
T Consensus 33 ~~~GGf~~~~~~dg-~~~~~~k~l~~nar~l~~~a~a~~~~~-~~~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~-~s~d 109 (402)
T 1fp3_A 33 REHGGFFTCLGRDG-RVYDDLKYVWLQGRQVWMYCRLYRKLE-RFHRPELLDAAKAGGEFLLRHARVAPPEKKCA-FVLT 109 (402)
T ss_dssp TTTSSBCCCBCTTS-CBSCCCEEHHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBC-SEEC
T ss_pred CCCCCEeeEECCCC-CCCCCccchhhhHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHhccCcCCCCceE-EEEC
Confidence 456787 4322232 233 2335666777765432100 002345568899999999987 66665 776 2211
Q ss_pred CChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc--ccCCCcC
Q 028222 76 GAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ--KLDGSWY 147 (212)
Q Consensus 76 ~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q--~~dG~w~ 147 (212)
... .++ ........-+.++.++..+..... .++..+.+.+.++++++.. .++|.|.
T Consensus 110 ~dg-----~~~--------~~~~~lyd~af~~~a~~~~~~atg---d~~~~~~A~~l~~~~~~~~~d~~~G~f~ 167 (402)
T 1fp3_A 110 RDG-----RPV--------KVQRSIFSECFYTMAMNELWRVTA---EARYQSEAVDMMDQIVHWVREDPSGLGR 167 (402)
T ss_dssp TTS-----CEE--------ECCSSSHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHTCGGGGCC
T ss_pred CCC-----Ccc--------ccccchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 110 000 001223345667777776554321 2334456677788887765 4667663
No 87
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.23 E-value=7.1 Score=24.42 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD 192 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d 192 (212)
..|+.||.+.+.. +++|++||++.+.+.
T Consensus 24 ~~a~~AL~~~~~n------ve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 24 EASRQALMDNGNN------LEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHCCCCc
Confidence 3467788876543 899999999987643
No 88
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=63.68 E-value=24 Score=33.22 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchH
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 103 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~T 103 (212)
|++...++|+.+ ..+.+++.+..+.+.|.+||.+......... .+...+.....|.+
T Consensus 361 D~~qd~~~~~~~------------~p~~~r~~il~~~~~Q~~dG~~~h~~~p~~~-----------~g~~~~~~~~~D~~ 417 (811)
T 3qde_A 361 DSNQDLLGFVHQ------------IPERARERLLDLAATQLEDGSAYHQYQPLTK-----------KGNNEIGSNFNDDP 417 (811)
T ss_dssp HHHHHHHTTTTT------------CHHHHHHHHHHHHTTBCTTSCBCSEECTTTC-----------CEECTTCCCBTTHH
T ss_pred HHHHHHHHHHhc------------CHHHHHHHHHHHHhhcccCCCccceecCCCC-----------CCCCCCCCCcccch
Confidence 566666666543 2578899999999999999998743221000 00000112234556
Q ss_pred HHHHHHHHHHHhhCCcc--ch------------hHHHHHHHHHHHHHHhccccCC
Q 028222 104 ASALKAMTLFQKLYPKH--KK------------NEVNNFITNGVKFTEDSQKLDG 144 (212)
Q Consensus 104 a~al~aL~~~~~~~~~~--~~------------~~i~~~i~ra~~~L~~~Q~~dG 144 (212)
.-.+.++..+-....+. -. ..+-+.++|+++|+++...++|
T Consensus 418 lW~i~av~~Y~~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 418 LWLILATAAYIKETGDYSILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred hHHHHHHHHHHHHHCCHHHHHhhhhhhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 65667776654321111 00 1234688999999998776665
No 89
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.15 E-value=7 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
...|..||.+.+.. .++.|++||++++.+
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 34577888877653 389999999999863
No 90
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=60.74 E-value=30 Score=33.50 Aligned_cols=73 Identities=15% Similarity=0.349 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHhccccC--CCcCCC----Cc-------------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHH
Q 028222 123 NEVNNFITNGVKFTEDSQKLD--GSWYGT----WG-------------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATD 183 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~~d--G~w~g~----~~-------------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~ 183 (212)
.++.+.+.|++--|+-++.+. |+.-.. |. -+-...+++++++|..+|.. +..++.++
T Consensus 280 ~~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~~----e~A~~~l~ 355 (1020)
T 1ulv_A 280 GALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDE----EAAARGVE 355 (1020)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCCH----HHHHHHHH
Confidence 445667888888888888763 554211 11 12235678888999988854 57889999
Q ss_pred HHHhcc-cCCCcccccc
Q 028222 184 FLLNIQ-CDDGGWGESY 199 (212)
Q Consensus 184 ~Ll~~Q-~~dGgw~~~~ 199 (212)
||.+.| +++|.|...+
T Consensus 356 ~L~~~Q~~~~G~~~~~y 372 (1020)
T 1ulv_A 356 WLFTYQQQPDGHFPQTS 372 (1020)
T ss_dssp HHHHHTCCTTSCCCSCB
T ss_pred HHHHHhcCCCCCeeeEE
Confidence 999999 8899887544
No 91
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=59.66 E-value=7.7 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHh
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLN 187 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~ 187 (212)
.++.||.+.+-+ +++|++||++
T Consensus 24 ~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 24 RNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHc
Confidence 357888877654 7899999986
No 92
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=59.23 E-value=44 Score=31.46 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchH
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 103 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~T 103 (212)
|++...++|+.+ ..+.+++.+..+.+.|.+||.+......... .+...+.....|.+
T Consensus 368 D~~qd~~~~~~~------------~pe~ar~~il~~~~~Q~~dG~v~h~~~p~~~-----------~g~~~~~~~~~D~~ 424 (822)
T 3rrs_A 368 DSNQDLLGFVHL------------IPERARERIIDIASTQFADGSAYHQYQPLTK-----------RGNNDIGSGFNDDP 424 (822)
T ss_dssp HHHHHHHHHTTT------------CHHHHHHHHHHHHTTCCTTSCCCSEEETTTT-----------EECTTTCSCBTTHH
T ss_pred HHHHHHHHHHhc------------CHHHHHHHHHHHHHhhcccCcccceecCcCC-----------CCccCCCCcccchH
Confidence 666777777543 2578899999999999999998743210000 01000112234556
Q ss_pred HHHHHHHHHHHhhCCccc--h------------hHHHHHHHHHHHHHHhccccCC
Q 028222 104 ASALKAMTLFQKLYPKHK--K------------NEVNNFITNGVKFTEDSQKLDG 144 (212)
Q Consensus 104 a~al~aL~~~~~~~~~~~--~------------~~i~~~i~ra~~~L~~~Q~~dG 144 (212)
.-.+.++..+-+...+.. . ..+-+.++|+++|+++...++|
T Consensus 425 lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 425 LWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred hHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 666677766543211110 0 1234589999999998776665
No 93
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=58.93 E-value=28 Score=31.10 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHHHHhcccCC-CceeecCCCCChhhhhh-cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccc--
Q 028222 46 KMEPERFYDAANFMLYIQSKT-GGITGWEPAGAPSWIEL-LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHK-- 121 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~~d-Ggw~~~~~~~~~~~~~~-l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~-- 121 (212)
+...+.++=+++||+++|.++ |++-.-..+ ..|... ..|.+--....+.+.+...++....+|+.........+
T Consensus 188 ~d~ldeikwg~D~llk~~~~~~g~~y~~v~~--~~w~g~~~~Pe~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~ 265 (537)
T 3gzk_A 188 PPALEVAREEIAWLLTMQDPATGGVYHKVTT--PSFPPLDTRPEDDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPA 265 (537)
T ss_dssp CHHHHHHHHHHHHHHHTBCTTTCCBBSEEEC--SSCCCTTCCGGGCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeEEEEecC--CCcCCCCcCcccCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHH
Confidence 334567778899999999854 665321111 111110 11111000011111122235555666665544332222
Q ss_pred -hhHHHHHHHHHHHHHHhccc
Q 028222 122 -KNEVNNFITNGVKFTEDSQK 141 (212)
Q Consensus 122 -~~~i~~~i~ra~~~L~~~Q~ 141 (212)
.+++..+.+++.+|+.+...
T Consensus 266 yA~~~L~~A~~~~~fa~~~~~ 286 (537)
T 3gzk_A 266 LSSCCADAARRAYAWLGAHEM 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 25677788899999988754
No 94
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=58.19 E-value=20 Score=30.65 Aligned_cols=40 Identities=5% Similarity=0.053 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC
Q 028222 106 ALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG 148 (212)
Q Consensus 106 al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g 148 (212)
++.+|..+... ...+++.+.++++++|+++.+.++|.|+.
T Consensus 236 I~~~Ll~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 236 IYYYLMQPSLQ---VSQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp HHHHHTCGGGC---CCHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHhh---cChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 34455544322 23355678899999999999999999975
No 95
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=57.40 E-value=25 Score=31.90 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHh---cc---ccCCCcC------------------CCCccchhhH
Q 028222 102 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTED---SQ---KLDGSWY------------------GTWGVCFIYS 157 (212)
Q Consensus 102 ~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~---~Q---~~dG~w~------------------g~~~~~~~~~ 157 (212)
..+.++.+|...... .++ .+..++..+||.. .| ++||+|. +.|+..-..+
T Consensus 54 Daa~t~~aL~~~~~~-~G~-----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~~~Q~D~ 127 (599)
T 2vn4_A 54 DSALVFKNLIDRFTE-TYD-----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGRPQRDG 127 (599)
T ss_dssp HHHHHHHHHHHHHHH-SBC-----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCSCCCTHH
T ss_pred hHHHHHHHHHHHHHh-CCC-----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCccccCcCCCeeccc
Confidence 366677777632100 111 2456778999974 67 8899874 2343221122
Q ss_pred -----HHHHHHHH--HHcCcCC----CChHHHHHHHHHHHhcccC--CCccccc
Q 028222 158 -----TWWAISGL--VAAEKTY----SNCLAIRKATDFLLNIQCD--DGGWGES 198 (212)
Q Consensus 158 -----T~~al~aL--~~~g~~~----~~~~~i~~a~~~Ll~~Q~~--dGgw~~~ 198 (212)
+++.+.++ ...|... ...+.|+++++||.+.-+. -|=|...
T Consensus 128 ~glr~~~~~~~~~~~~~~g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer 181 (599)
T 2vn4_A 128 PALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEV 181 (599)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCC
T ss_pred cchhHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeec
Confidence 33333333 2333321 1368999999999987764 3445543
No 96
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=57.23 E-value=88 Score=26.44 Aligned_cols=158 Identities=9% Similarity=-0.077 Sum_probs=79.9
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCCCceee---cCCCCChhhhhhcCcccccchhh
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITG---WEPAGAPSWIELLNPIEFLDEVI 94 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~---~~~~~~~~~~~~l~~~e~~~~~~ 94 (212)
.+...||-.-|.+|..+.+. .|++...+...+.++++++.. ++||+... |.+. +.......+ .+.|.+
T Consensus 144 ~~~iID~mmni~~L~~A~~~----~gd~~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~-tG~~~~~~t-~qG~~d-- 215 (377)
T 2ahf_A 144 GRIIIDCLLNLPLLLWAGEQ----TGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPE-NGNAIRGGT-HQGNTD-- 215 (377)
T ss_dssp TEEEGGGGGGHHHHHHHHHH----HCCTHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTT-TCCEEEEEC-SSSSST--
T ss_pred ceEEechHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCC-CCCeeeCCC-cCCcCC--
Confidence 35566666667777765442 245667788888888998775 45665531 1110 110000000 000100
Q ss_pred cccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCC--cCCCCc-----cchhhHHHHHHHHHHH
Q 028222 95 IEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGS--WYGTWG-----VCFIYSTWWAISGLVA 167 (212)
Q Consensus 95 ~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~--w~g~~~-----~~~~~~T~~al~aL~~ 167 (212)
|+.-.--.|.++.+|..+.+.. ..++..+...+..+++++...+||. |.-... .....+++.+..+|..
T Consensus 216 -ds~WaRGqAw~i~gl~~ly~~T---~d~~yL~~A~~la~~~l~~~~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~ 291 (377)
T 2ahf_A 216 -GSTWTRGQAWGIYGFALNSRYL---GNADLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLE 291 (377)
T ss_dssp -TSCBHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHTTCCTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHH
T ss_pred -cchhHHHHHHHHHHHHHHHHHH---CChHHHHHHHHHHHHHHHhhHHhCCcccccCCCccCCCccCCCHHHHHHHHHHH
Confidence 0000001366677776655432 1244556778889999999977776 311000 1123445555566655
Q ss_pred cCcCC--------CChHHHHHHHHHHHhc
Q 028222 168 AEKTY--------SNCLAIRKATDFLLNI 188 (212)
Q Consensus 168 ~g~~~--------~~~~~i~~a~~~Ll~~ 188 (212)
+.... ...+..++.++.|.+.
T Consensus 292 L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~ 320 (377)
T 2ahf_A 292 IASQLDESDPERQRFIDAAKTTVTALRDG 320 (377)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 43211 1234566667666553
No 97
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=56.41 E-value=9.6 Score=23.43 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
.++.||.+.+-+ +++|++||++.
T Consensus 34 ~~~~AL~~~~gn------ve~Ave~L~~~ 56 (58)
T 1wr1_B 34 RNVAALRRSGGS------VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhC
Confidence 467888887654 88999999875
No 98
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.48 E-value=12 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
..|..||.+.+.. .+++|++||++++.+
T Consensus 24 ~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 24 GRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 4577788877532 389999999998753
No 99
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.24 E-value=11 Score=24.93 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 190 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~ 190 (212)
..|..||.+.+-. +++|++||++++.
T Consensus 44 ~~A~~AL~~t~gd------ve~A~e~L~sh~~ 69 (83)
T 1veg_A 44 VVAEAALRVFGGN------VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHTTTC------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCC------HHHHHHHHHhCCC
Confidence 3477888877643 8999999999875
No 100
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.11 E-value=13 Score=21.39 Aligned_cols=23 Identities=26% Similarity=0.448 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
..|..||.+.| .+++|++||+++
T Consensus 24 ~~a~~AL~~~~-------n~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTS-------TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSC-------SHHHHHHHHHTC
T ss_pred HHHHHHHHHcC-------CHHHHHHHHHcC
Confidence 34667777764 288999999875
No 101
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.77 E-value=12 Score=24.20 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
..|..||.+.+.. .+++|++||++++.+
T Consensus 24 ~~a~~AL~~t~n~-----~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 24 DACRKAVYYTGNS-----GAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 3466777776642 289999999998864
No 102
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=53.69 E-value=46 Score=28.78 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccch---hhcc--cCccchHHHHHHHHHHHHhhCCcc-
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDE---VIIE--HDYVECTASALKAMTLFQKLYPKH- 120 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~---~~~d--~~~~~~Ta~al~aL~~~~~~~~~~- 120 (212)
...+.++=+++||+++|.++|.+-.-.++........-.|.+.-.. ..++ ++..+.++.+..+|+.........
T Consensus 91 d~ldeikwg~D~llk~~~~~g~~y~qVgd~~~Dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D 170 (433)
T 1ks8_A 91 DGRKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVD 170 (433)
T ss_dssp HHHHHHHHHHHHHHHHCCBTTBEEEEESCHHHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEeCCCCcCCcccCCHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccC
Confidence 3456788889999999999987653222110000000011110000 0112 222345666666666554433221
Q ss_pred --chhHHHHHHHHHHHHHHhcc
Q 028222 121 --KKNEVNNFITNGVKFTEDSQ 140 (212)
Q Consensus 121 --~~~~i~~~i~ra~~~L~~~Q 140 (212)
...++..+.+++.+|..+.+
T Consensus 171 ~~yA~~~L~~A~~~~~fa~~~~ 192 (433)
T 1ks8_A 171 GTYSNNLLTHARQLFDFANNYR 192 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 23556778888899998875
No 103
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=53.52 E-value=9.8 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=17.3
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
.++.||.+.+-. +++|++||++.
T Consensus 29 ~~~~AL~~t~gn------~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGGD------INAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHTTC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhC
Confidence 467778777643 88999999864
No 104
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=52.60 E-value=1e+02 Score=25.76 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHhccc--cCCC-cCC
Q 028222 123 NEVNNFITNGVKFTEDSQK--LDGS-WYG 148 (212)
Q Consensus 123 ~~i~~~i~ra~~~L~~~Q~--~dG~-w~g 148 (212)
++..+.++++++|+++.+. ++|. |+.
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 226 EASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 4456889999999977654 6777 644
No 105
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.21 E-value=17 Score=23.98 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
.|..||.+.+. .+++|++||++++.+
T Consensus 45 ~a~~AL~~t~~------nve~A~ewL~~~~~d 70 (83)
T 2dai_A 45 RATKALQLNHM------SVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHCCCC
Confidence 46677877643 389999999998754
No 106
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.67 E-value=11 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
..|..||.+.+. .+++|++||++++.+
T Consensus 24 ~~a~~AL~~t~~------nve~A~e~L~~~~~d 50 (63)
T 2dak_A 24 DQALKALRATNN------SLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHTTS------CSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHhCCCC
Confidence 346677777653 278999999998754
No 107
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=50.52 E-value=15 Score=20.72 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
.|..||.+.+.. +++|++||++.
T Consensus 20 ~a~~AL~~~~~n------~e~A~~~L~~~ 42 (43)
T 2g3q_A 20 EAHNALEKCNWD------LEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHTC
T ss_pred HHHHHHHHhCcC------HHHHHHHHHcC
Confidence 466778776543 78999999864
No 108
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=49.04 E-value=1.1e+02 Score=25.29 Aligned_cols=135 Identities=9% Similarity=-0.153 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchH
Q 028222 24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 103 (212)
Q Consensus 24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~T 103 (212)
=++..+.+|+...+. .|++...+.++++++++... .+|.|. .+ | .+.-
T Consensus 47 W~a~~~~~l~d~~~~----tgd~~y~~~a~~~~~~~~~~--~~~~~~----~~-------------~---------~DD~ 94 (349)
T 3k7x_A 47 WLAHLVEVRLDAYLR----TKKQADLEVAEKTYLHNKNR--NGGTLI----HD-------------F---------YDDM 94 (349)
T ss_dssp HHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHH--TTSSSC----CS-------------B---------HHHH
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhc--CCCCCC----cc-------------C---------ccHH
Confidence 367888888775431 24556678888888888774 233442 00 1 1123
Q ss_pred HHHHHHHHHHHhhCCccchhHHHHHHHHHHHHH-Hhcccc--CCCcCCCCcc-----chhhHHHHHHHHHHHcCcC---C
Q 028222 104 ASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT-EDSQKL--DGSWYGTWGV-----CFIYSTWWAISGLVAAEKT---Y 172 (212)
Q Consensus 104 a~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L-~~~Q~~--dG~w~g~~~~-----~~~~~T~~al~aL~~~g~~---~ 172 (212)
+..++++....+.. ..++..+...+..++| ...-++ .|++ .|.. ..+...+.++.+|+.+... +
T Consensus 95 a~~~la~~~aye~t---~~~~yL~~A~~l~~~l~~~~wd~~~gGGi--~W~~~~~~~knaisN~~~~~~la~l~~~tgd~ 169 (349)
T 3k7x_A 95 LWNALAAYRLYKAT---GKSIYLEDAQLVWQDLVDTGWNDIMGGGF--AWRRPQMYYKNTPVNAPFIILSCWLYNELNET 169 (349)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHTBCSGGGSCB--EEETTEEEEEEHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHH---CCchHHHHHHHHHHHHHHhCCCCCCCCce--EecCCCccccchhhHHHHHHHHHHHHHHhCCH
Confidence 33344554444332 2244556777788898 666554 3655 2422 1123555666666554321 1
Q ss_pred CChHHHHHHHHHHHhcc-cCCCcc
Q 028222 173 SNCLAIRKATDFLLNIQ-CDDGGW 195 (212)
Q Consensus 173 ~~~~~i~~a~~~Ll~~Q-~~dGgw 195 (212)
...+..++..+|+.+.- +++|..
T Consensus 170 ~Yl~~A~~~~~w~~~~l~d~~g~v 193 (349)
T 3k7x_A 170 KYLEWAMKTYEWQTKVLVREDGFV 193 (349)
T ss_dssp HHHHHHHHHHHHHHHHHBCTTSCB
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeE
Confidence 23567788889997743 345544
No 109
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=48.86 E-value=20 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
..|..||...+.. .+++|++||++++.+
T Consensus 44 ~~a~~AL~~t~n~-----n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 44 LHCQKAAINTSNA-----GVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTTTC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHhCCCc
Confidence 3477888877532 389999999998753
No 110
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=48.65 E-value=43 Score=30.58 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHHhcccCC--CceeecCCCC-ChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc---c
Q 028222 47 MEPERFYDAANFMLYIQSKT--GGITGWEPAG-APSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK---H 120 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~d--Ggw~~~~~~~-~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~---~ 120 (212)
...+.++=++|||+++|.++ |++-.-..+. ...+ ..|.+.-....+-+...+.|+.+..+|+........ .
T Consensus 233 d~ldeikwg~Dyllk~q~~~~~g~~y~~vgd~~~~~~---~~Pe~~~~~R~~~~~~s~~a~e~AAAlAaAS~vfk~~D~~ 309 (639)
T 1clc_A 233 DFLDELKYEIDWILTMQYPDGSGRVAHKVSTRNFGGF---IMPENEHDERFFVPWSSAATADFVAMTAMAARIFRPYDPQ 309 (639)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSSCCBEEEEECSSCCCS---CCGGGCCSCCEEEEECHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC---CCchhcCCCceEecCCcHHHHHHHHHHHHHHHhccccCHH
Confidence 34567788899999999975 5553221111 1111 111110000000011234455555555554433221 1
Q ss_pred chhHHHHHHHHHHHHHHhccc
Q 028222 121 KKNEVNNFITNGVKFTEDSQK 141 (212)
Q Consensus 121 ~~~~i~~~i~ra~~~L~~~Q~ 141 (212)
...++..+.+++.+|..+...
T Consensus 310 yA~~~L~~Ak~l~~fA~~~~~ 330 (639)
T 1clc_A 310 YAEKCINAAKVSYEFLKNNPA 330 (639)
T ss_dssp HHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 235667788899999998763
No 111
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=45.75 E-value=85 Score=29.92 Aligned_cols=80 Identities=10% Similarity=-0.027 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc-cchhHHHH
Q 028222 49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-HKKNEVNN 127 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~-~~~~~i~~ 127 (212)
.+..++.+++|...|.+||.++...+.. + ....++-+...+.++..+.....+ ..-+++-+
T Consensus 594 ~~lar~~L~~l~~~Q~~dG~ip~~~p~~---~---------------~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp 655 (956)
T 2okx_A 594 TEIVERCLNLVPGSADETPLYLDQVPSA---W---------------SSVIPNWTFFWILACREYAAHTGNEAFAARIWP 655 (956)
T ss_dssp CHHHHHHHHHGGGGTTTCTTCCSBSSCS---S---------------CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCcCcccccc---c---------------cCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3668899999999999999987432210 0 001111233334444433222111 11233457
Q ss_pred HHHHHHHHHHhccccCCCc
Q 028222 128 FITNGVKFTEDSQKLDGSW 146 (212)
Q Consensus 128 ~i~ra~~~L~~~Q~~dG~w 146 (212)
.++++++|+.+..+++|-+
T Consensus 656 ~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 656 AVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHHHHHHHHTTBCTTSSB
T ss_pred HHHHHHHHHHhcCCCCCCE
Confidence 8999999999987777754
No 112
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=45.21 E-value=45 Score=28.90 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHH--HhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchH
Q 028222 26 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFM--LYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 103 (212)
Q Consensus 26 a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~L--l~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~T 103 (212)
+..|.|++...+ .++++.....+++++.+++| .+++.-.|-|..|-..++.. .+++++ ..+ .-+.|| |
T Consensus 58 Gf~L~a~~va~e--~G~I~~~e~~~R~~~tL~~l~~~~~~r~~G~fyhwyd~~Tg~---~l~~~~-~d~---~vStVD-t 127 (424)
T 4gl3_A 58 GFGVMAIIVGIE--RGFVTREQGAERMLKIVRFLSDKNTDSYHGMWAHWMNGKTGK---TIPFSR-KDD---GADIVE-S 127 (424)
T ss_dssp HHHHHHHHHHHH--TTSSCHHHHHHHHHHHHHHHHCTTSCCBTTBCCSEEETTTCC---EECSBT-TBC---SEEHHH-H
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHhhccccccCCccccceeCCCCC---CCCCcC-CCC---cccHHH-H
Confidence 455556555443 24444444567788888888 45666788888664333221 222221 000 013343 7
Q ss_pred HHHHHHHHHHHhh
Q 028222 104 ASALKAMTLFQKL 116 (212)
Q Consensus 104 a~al~aL~~~~~~ 116 (212)
+..+..|..+.+-
T Consensus 128 g~L~~gLl~~~~y 140 (424)
T 4gl3_A 128 AFMFEGLLAAHQY 140 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
No 113
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=44.44 E-value=95 Score=26.94 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHhhCCcc-chhHHHHHHHHHHHHHHhccccCCCcC-------CC------Cc-cchhhHHHHHHHH
Q 028222 100 VECTASALKAMTLFQKLYPKH-KKNEVNNFITNGVKFTEDSQKLDGSWY-------GT------WG-VCFIYSTWWAISG 164 (212)
Q Consensus 100 ~~~Ta~al~aL~~~~~~~~~~-~~~~i~~~i~ra~~~L~~~Q~~dG~w~-------g~------~~-~~~~~~T~~al~a 164 (212)
+..++..|+++....+. ++ .+.+..+++.+.+++|.+..+-.|.|+ +. |. ...+..|++-+++
T Consensus 64 ~tniGfgL~A~~vA~e~--G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~lpf~~~d~~~StVDTa~L~~G 141 (430)
T 3eu8_A 64 SGGSGFGIMAILAGIDR--GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHVQPFGQKDNGGDLVETAFLMQG 141 (430)
T ss_dssp HHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCBCCBTTTBCSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCcCCCCcccCcccHHHHHHHHHH
Confidence 34466777777665443 22 345667889999999999888889885 11 11 1245678888888
Q ss_pred HHHcCc--C--CCChHHHHHHHHHHHhcc
Q 028222 165 LVAAEK--T--YSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 165 L~~~g~--~--~~~~~~i~~a~~~Ll~~Q 189 (212)
|+.+.. + ....+.|+.-++-|.+..
T Consensus 142 lL~ar~YF~~~~~~E~~i~~~~~~L~~~v 170 (430)
T 3eu8_A 142 LLAVHQYYAEGSAEEKKLAGRIDKLWREV 170 (430)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhC
Confidence 876532 1 112445666677776644
No 114
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=42.98 E-value=60 Score=30.55 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhccccCCCcCCCCc------c-----chhhHHHHHHHHHHHc----Cc---CC-------------CCh
Q 028222 127 NFITNGVKFTEDSQKLDGSWYGTWG------V-----CFIYSTWWAISGLVAA----EK---TY-------------SNC 175 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~dG~w~g~~~------~-----~~~~~T~~al~aL~~~----g~---~~-------------~~~ 175 (212)
+.+++.+..+.+.|.+||..+-.|. . .....+.+-+.++... |. .. ..-
T Consensus 382 e~ar~~il~~~~~Q~~dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~ 461 (822)
T 3rrs_A 382 ERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPLF 461 (822)
T ss_dssp HHHHHHHHHHHTTCCTTSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEHH
T ss_pred HHHHHHHHHHHHhhcccCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccHH
Confidence 4678889999999999998854432 1 1233455566666542 11 10 013
Q ss_pred HHHHHHHHHHHhcccCCC
Q 028222 176 LAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 176 ~~i~~a~~~Ll~~Q~~dG 193 (212)
+.++++++|+++...++|
T Consensus 462 eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 462 EHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 578999999997655544
No 115
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.29 E-value=19 Score=21.03 Aligned_cols=24 Identities=21% Similarity=0.251 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
..|..||.+.+.. +++|++||++.
T Consensus 23 ~~a~~AL~~~~~n------~e~A~e~L~~g 46 (49)
T 1ify_A 23 ERVVAALRASYNN------PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHTTTSC------SHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 3467788776643 78899999874
No 116
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=37.39 E-value=24 Score=20.48 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222 158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 190 (212)
Q Consensus 158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~ 190 (212)
...|+.||.+.+.+ +++|++||+++-.
T Consensus 18 ~~~a~~Al~a~~~n------~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 18 ESLVIQAYFACEKN------ENLAANFLLSQNF 44 (47)
T ss_dssp HHHHHHHHTTTTSC------HHHHHHHTTSCCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCcC
Confidence 44678888888754 7889999988643
No 117
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.15 E-value=36 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=18.6
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 191 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~ 191 (212)
.|..||...+. .+++|++||+++..+
T Consensus 37 ~a~~AL~~~n~------n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 37 PAEEALKSNNM------NLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHHCcCC
Confidence 46677744433 389999999998764
No 118
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=35.85 E-value=94 Score=29.14 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhccccCCCcCCCCc------c-----chhhHHHHHHHHHHHc----CcCC----------------CCh
Q 028222 127 NFITNGVKFTEDSQKLDGSWYGTWG------V-----CFIYSTWWAISGLVAA----EKTY----------------SNC 175 (212)
Q Consensus 127 ~~i~ra~~~L~~~Q~~dG~w~g~~~------~-----~~~~~T~~al~aL~~~----g~~~----------------~~~ 175 (212)
+.+++.+..+.+.|.+||..+-.|. . .....+.+-+.++... |... ..-
T Consensus 375 ~~~r~~il~~~~~Q~~dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~~p~~~~~~~~~tl~ 454 (811)
T 3qde_A 375 ERARERLLDLAATQLEDGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQVPFNNDPSKADTMF 454 (811)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHHhhcccCCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHHhhhhhhcCCcccccHH
Confidence 4678889999999999998754332 1 1233455556666542 2110 013
Q ss_pred HHHHHHHHHHHhcccCCC
Q 028222 176 LAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 176 ~~i~~a~~~Ll~~Q~~dG 193 (212)
+.++++++|+++...++|
T Consensus 455 eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 455 EHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHHHHHHHTCBCTTS
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 578999999997665554
No 119
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=35.52 E-value=64 Score=29.21 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHhcccCCCc
Q 028222 48 EPERFYDAANFMLYIQSKTGG 68 (212)
Q Consensus 48 ~~~~i~~av~~Ll~~Q~~dGg 68 (212)
..+.++=+++||+++|.++|.
T Consensus 229 ~ldeikwg~D~llk~q~~~g~ 249 (609)
T 1ut9_A 229 ILDEARWEIEFFKKMQVTEKE 249 (609)
T ss_dssp HHHHHHHHHHHHHHHBCCTTT
T ss_pred HHHHHHHHHHHHHHhccCCCC
Confidence 456788899999999998874
No 120
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=35.51 E-value=1.2e+02 Score=26.08 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccch----hhccc--CccchHHHHHHHHHHHHhhCCc-
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDE----VIIEH--DYVECTASALKAMTLFQKLYPK- 119 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~----~~~d~--~~~~~Ta~al~aL~~~~~~~~~- 119 (212)
...+.++=+++||++++..+|++-.-.++........-+|.+.-.. ..+++ +..+.++.+..+|+........
T Consensus 93 d~ldeikwg~D~llk~~~~~~~~y~qVgd~~~Dh~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~ 172 (441)
T 1ia6_A 93 KMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNI 172 (441)
T ss_dssp HHHHHHHHHHHHHHHTCCSTTCEEEEESCHHHHTTCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEeCCCCccccccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 3456788899999999887776643222110000000011110000 11122 2234455555555554433221
Q ss_pred --cchhHHHHHHHHHHHHHHhccc
Q 028222 120 --HKKNEVNNFITNGVKFTEDSQK 141 (212)
Q Consensus 120 --~~~~~i~~~i~ra~~~L~~~Q~ 141 (212)
....++..+.+++.+|..+...
T Consensus 173 D~~yA~~~L~~A~~~~~fa~~~~g 196 (441)
T 1ia6_A 173 DSAYATKCLNAAKELYAMGKANQG 196 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1235567788889999988753
No 121
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=35.50 E-value=1.5e+02 Score=26.21 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHHHhhCC--ccchhHHHHHHHHHHHHHHhccccCC
Q 028222 99 YVECTASALKAMTLFQKLYP--KHKKNEVNNFITNGVKFTEDSQKLDG 144 (212)
Q Consensus 99 ~~~~Ta~al~aL~~~~~~~~--~~~~~~i~~~i~ra~~~L~~~Q~~dG 144 (212)
.+|.++..|.++..+-+... ..-.+....+++++++++.+.|+.+|
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~ 225 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDD 225 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccC
Confidence 46788988888776544322 22334566899999999999888885
No 122
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=33.43 E-value=34 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 188 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~ 188 (212)
..++.||.+.+-+ +++||+||++.
T Consensus 82 ~~ni~AL~~t~Gd------ve~AVe~L~~~ 105 (108)
T 2cwb_A 82 ELSLRALQATGGD------IQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhc
Confidence 3577888887754 88999999986
No 123
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=32.80 E-value=43 Score=20.01 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHhcc-cCCCccc
Q 028222 173 SNCLAIRKATDFLLNIQ-CDDGGWG 196 (212)
Q Consensus 173 ~~~~~i~~a~~~Ll~~Q-~~dGgw~ 196 (212)
..++.+..++..++++= .++|||-
T Consensus 5 ~~D~rl~~al~qMl~MGF~negGWL 29 (52)
T 1q02_A 5 EADPRLIESLSQMLSMGFSDEGGWL 29 (52)
T ss_dssp TSCHHHHHHHHHHHTTTCCCTTSHH
T ss_pred CcChHHHHHHHHHHHcCCCccccHH
Confidence 34677778888777754 4677774
No 124
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.44 E-value=47 Score=22.91 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.0
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~ 199 (212)
.|..||...+.+ +.+|+.+|++.-.+-|.|....
T Consensus 56 eAr~AL~~~ngD------l~~AI~~Lleg~~~~~~W~~~~ 89 (104)
T 1wj7_A 56 ECVIALHDCNGD------VNRAINVLLEGNPDTHSWEMVG 89 (104)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHTCSSSCSSCSSCC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCcCCceeeec
Confidence 477889988765 8899999998876668897643
No 125
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=31.94 E-value=45 Score=30.97 Aligned_cols=21 Identities=29% Similarity=0.034 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcccCCCce
Q 028222 49 PERFYDAANFMLYIQSKTGGI 69 (212)
Q Consensus 49 ~~~i~~av~~Ll~~Q~~dGgw 69 (212)
.+..++.+.++.+.|.+||+.
T Consensus 363 p~~ar~~l~~~~~~Q~~~G~~ 383 (807)
T 1v7w_A 363 PEMTRKRIVDLLRGQVKAGYG 383 (807)
T ss_dssp HHHHHHHHHHHHHTBCTTSCB
T ss_pred HHHHHHHHHHHHhccccCCCc
Confidence 577899999999999999973
No 126
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=30.72 E-value=52 Score=29.81 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhcccCCC
Q 028222 175 CLAIRKATDFLLNIQCDDG 193 (212)
Q Consensus 175 ~~~i~~a~~~Ll~~Q~~dG 193 (212)
...++-+++||+++|.++|
T Consensus 230 ldeikwg~D~llk~q~~~g 248 (609)
T 1ut9_A 230 LDEARWEIEFFKKMQVTEK 248 (609)
T ss_dssp HHHHHHHHHHHHHHBCCTT
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 4568889999999998877
No 127
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=28.72 E-value=1.8e+02 Score=26.25 Aligned_cols=94 Identities=7% Similarity=0.070 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccch----hhcccCc--cchHHHHHHHHHHHHhhCCc-
Q 028222 47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDE----VIIEHDY--VECTASALKAMTLFQKLYPK- 119 (212)
Q Consensus 47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~----~~~d~~~--~~~Ta~al~aL~~~~~~~~~- 119 (212)
...+.++=+++||+++|..++.+-.-.++. ..-+....+.|.... ..++.+. .+.++.+..+|+........
T Consensus 92 d~ldeikwg~Dyllk~~~~~~~~y~qVGdg-~~DH~~w~~pe~m~~~r~~y~~~~~~pgsd~a~~~AAAlAaAS~vfk~~ 170 (605)
T 1tf4_A 92 YLKDNLRWVNDYFIKAHPSPNVLYVQVGDG-DADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADD 170 (605)
T ss_dssp HHHHHHHHHHHHHHHTCSBTTBEEEEESCH-HHHHHCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEeCCC-CcCccccCChhhCCCCCceeEecCCCCcchHHHHHHHHHHHHHhhcccc
Confidence 345678889999999998776543221110 000011110111000 1122222 23444445555544332221
Q ss_pred --cchhHHHHHHHHHHHHHHhccc
Q 028222 120 --HKKNEVNNFITNGVKFTEDSQK 141 (212)
Q Consensus 120 --~~~~~i~~~i~ra~~~L~~~Q~ 141 (212)
....++..+.+++.+|..+.+.
T Consensus 171 D~~yA~~~L~~Ak~~~~fA~~~~g 194 (605)
T 1tf4_A 171 DPAYAATLVQHAKQLYTFADTYRG 194 (605)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1235567788889999988753
No 128
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=27.71 E-value=2.8e+02 Score=23.51 Aligned_cols=159 Identities=8% Similarity=-0.053 Sum_probs=79.5
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhccc-CCCceee-cC-CCCChhhhhhcCcccccchhhc
Q 028222 19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS-KTGGITG-WE-PAGAPSWIELLNPIEFLDEVII 95 (212)
Q Consensus 19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~-~dGgw~~-~~-~~~~~~~~~~l~~~e~~~~~~~ 95 (212)
.+...|+...|.+|..+.+. .|++...+...+.++++++..- +||+... +. ...++......+ .+.|.+
T Consensus 169 ~~~iID~~mni~~L~~A~~~----~gd~~y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t-~qGy~d--- 240 (397)
T 2zzr_A 169 YRLIIDCLLNIQLLFFAYEQ----TGDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVT-RQGYSD--- 240 (397)
T ss_dssp CEEETTHHHHTHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEEC-TTSSST---
T ss_pred CceeechHhHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCc-ccccCc---
Confidence 46677888888888876442 2455666777788888887664 4564421 11 000000000000 000100
Q ss_pred ccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCC-cCC-CC-----ccchhhHHHHHHHHHHHc
Q 028222 96 EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGS-WYG-TW-----GVCFIYSTWWAISGLVAA 168 (212)
Q Consensus 96 d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~-w~g-~~-----~~~~~~~T~~al~aL~~~ 168 (212)
|+.-.--.|.++.+|..+.... ..++..+...+..++++++-.+||. +.. .. ......+++.+..+|..+
T Consensus 241 ds~WaRGqAw~i~gl~~lY~~T---~d~~yL~~A~~la~~~l~~~~~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L 317 (397)
T 2zzr_A 241 ESSWARGQAWGIYGIPLSYRKM---KDYQQIILFKGMTNYFLNRLPEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEM 317 (397)
T ss_dssp TSCBHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTCCTTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHhhHHhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 0000011366777777654332 1244556678889999998866775 311 00 011234566666666665
Q ss_pred CcC-C-----C--ChHHHHHHHHHHHhc
Q 028222 169 EKT-Y-----S--NCLAIRKATDFLLNI 188 (212)
Q Consensus 169 g~~-~-----~--~~~~i~~a~~~Ll~~ 188 (212)
... . . ..+..++.++.|.+.
T Consensus 318 ~~~~~~~~~~~~~Y~~~A~~~l~~l~~~ 345 (397)
T 2zzr_A 318 LKYLPEVDPDKETYKYAMHTMLRSLIEQ 345 (397)
T ss_dssp HTTSCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccchhhHHHHHHHHHHHHHHHHH
Confidence 332 1 1 224455666666543
No 129
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.40 E-value=89 Score=18.79 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.1
Q ss_pred HHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQ 189 (212)
Q Consensus 160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q 189 (212)
.|-.||...|... ++.|++||++.-
T Consensus 25 rae~Alk~Tg~~G-----le~AmewL~k~~ 49 (54)
T 2cos_A 25 MAGRALKQTGSRS-----IEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHTSCC-----HHHHHHHHHHHS
T ss_pred HHHHHHHHhCccc-----HHHHHHHHHHhc
Confidence 4556666666543 888999998764
No 130
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.29 E-value=65 Score=17.25 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHcCcCCCChHHHHHHHHHH
Q 028222 161 AISGLVAAEKTYSNCLAIRKATDFL 185 (212)
Q Consensus 161 al~aL~~~g~~~~~~~~i~~a~~~L 185 (212)
|..||...+.+ +++|++||
T Consensus 21 a~~AL~~~~~n------~e~A~~~L 39 (40)
T 1z96_A 21 AAQALDAANGD------LDVAASFL 39 (40)
T ss_dssp HHHHHHHTTTC------HHHHHHHH
T ss_pred HHHHHHHcCCC------HHHHHHHH
Confidence 55666665432 67777776
No 131
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=22.51 E-value=72 Score=22.34 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcc
Q 028222 176 LAIRKATDFLLNIQ 189 (212)
Q Consensus 176 ~~i~~a~~~Ll~~Q 189 (212)
..++||++||.++-
T Consensus 102 nd~erAlewL~~~~ 115 (118)
T 4ae4_A 102 NDQDNALEDLMARA 115 (118)
T ss_dssp TCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhc
Confidence 35899999998863
No 132
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=21.55 E-value=71 Score=16.94 Aligned_cols=16 Identities=25% Similarity=0.061 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhccc
Q 028222 175 CLAIRKATDFLLNIQC 190 (212)
Q Consensus 175 ~~~i~~a~~~Ll~~Q~ 190 (212)
..+++.-|+||++.+.
T Consensus 8 ~~aakdFv~WL~ngk~ 23 (31)
T 3c5t_B 8 EEAVRLFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4578889999998874
No 133
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=20.70 E-value=3.6e+02 Score=22.25 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=19.0
Q ss_pred CCcHHHHHHHHHHHHhccc--CCCc-eee
Q 028222 46 KMEPERFYDAANFMLYIQS--KTGG-ITG 71 (212)
Q Consensus 46 ~~~~~~i~~av~~Ll~~Q~--~dGg-w~~ 71 (212)
+...+.++++++|+++.+. ++|. |+.
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 226 EASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3456789999999976544 6777 754
No 134
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=20.05 E-value=1.4e+02 Score=25.13 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCC------Ccccc
Q 028222 159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD------GGWGE 197 (212)
Q Consensus 159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d------Ggw~~ 197 (212)
.+|+.+|.+.-.. +.+..+.+++-|...|..| ||++.
T Consensus 285 ~yAiaal~~~~~~--D~~la~~~~~rm~~fq~~d~~s~yyGG~~~ 327 (350)
T 3ren_A 285 IYSNVALIANYIG--DKELFNKAIDKLKYYQIKNKDSVLYGGFGD 327 (350)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHSCCCTTSTTTTSCSB
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHhcccCCCCcccCCcccc
Confidence 4555556554333 4789999999999999888 66663
Done!