Query 028224
Match_columns 212
No_of_seqs 120 out of 136
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 91.5 0.54 1.8E-05 44.8 8.0 102 94-206 7-112 (528)
2 1lw3_A Myotubularin-related pr 89.3 1 3.5E-05 44.2 8.1 121 73-205 59-183 (657)
3 2hth_B Vacuolar protein sortin 83.5 1.2 4.1E-05 35.2 4.2 50 114-174 35-84 (140)
4 2cay_A VPS36 PH domain, vacuol 73.7 2.2 7.5E-05 34.1 3.0 45 114-168 48-92 (145)
5 2yf0_A Myotubularin-related pr 72.4 16 0.00056 34.6 9.1 68 110-193 18-85 (512)
6 1vcb_B Protein (elongin C); tu 45.5 7.9 0.00027 29.2 1.4 20 168-187 12-31 (112)
7 1hv2_A Elongin C, ELC1; protei 39.9 13 0.00046 27.1 1.9 17 171-187 2-18 (99)
8 2d9z_A Protein kinase C, NU ty 39.6 20 0.00068 28.7 3.0 43 144-189 43-89 (129)
9 2fnj_C Transcription elongatio 37.1 13 0.00045 26.9 1.4 15 173-187 1-15 (96)
10 1zyi_A Methylosome subunit pic 32.4 42 0.0014 27.6 3.9 30 106-136 32-61 (171)
11 1pfj_A TFIIH basal transcripti 31.9 1.1E+02 0.0038 23.6 6.0 60 119-192 22-81 (108)
12 4ajy_C Transcription elongatio 31.5 17 0.00059 26.0 1.3 13 174-186 3-15 (97)
13 2coa_A Protein kinase C, D2 ty 31.1 29 0.001 27.5 2.7 40 145-186 44-87 (125)
14 2aze_B Transcription factor E2 28.3 20 0.00067 27.3 1.2 15 104-118 85-99 (106)
15 3vub_A CCDB; topoisomerase poi 23.7 87 0.003 23.5 4.0 36 148-188 29-64 (101)
16 3vu7_H DNA repair protein REV1 22.0 38 0.0013 26.4 1.7 35 5-39 15-49 (124)
17 2zou_A Spondin-1; beta-sandwic 20.8 99 0.0034 24.1 4.0 53 129-191 5-57 (149)
18 3s6n_M SurviVal motor neuron p 20.5 56 0.0019 21.2 2.0 16 193-208 18-33 (37)
19 3ffy_A Putative tetrapyrrole ( 20.3 32 0.0011 25.5 1.0 13 183-195 18-30 (115)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=91.45 E-value=0.54 Score=44.78 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=60.4
Q ss_pred ccCChhhhhhhhcce--eeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCC
Q 028224 94 FETVPEEQLQNSYAC--YLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPA 171 (212)
Q Consensus 94 F~~~~~EkLlKa~~C--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~ 171 (212)
|...|||.++..-.- |+..-.|++.|+|||++.|+.|.++.. +. .+.+-|||..|..|..........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~~----~~~~~iPL~~I~~vek~~~~s~~~ 76 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP----PFVLDASLGVINRVEKIGGASSRG 76 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS----CEEEEEEGGGEEEEEEECCTTCCS
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------Cc----cEEEEeeccceEEEEEcCCCCcCC
Confidence 556899999855211 555557899999999999999998521 11 234689988777776422110111
Q ss_pred --CCeEEEEEecCceeeeeeccchHHHHHHHHHHHhh
Q 028224 172 --EKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEA 206 (212)
Q Consensus 172 --eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~~ 206 (212)
--.|+|..-|- ..+=.+|-.=+...+.+-++|++
T Consensus 77 ~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 77 ENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp TTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred CCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHH
Confidence 12477766654 44444565433323344445443
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=89.26 E-value=1 Score=44.17 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=60.4
Q ss_pred hhhhhhhhhhcCCcceeeeecccCChhhhhhhhcc-e-eeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEE
Q 028224 73 RIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYA-C-YLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYK 150 (212)
Q Consensus 73 KlslGakil~~GG~ekiFkQ~F~~~~~EkLlKa~~-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYK 150 (212)
.+.+.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|.++.. +. .+.
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~------~~----~~~ 127 (657)
T 1lw3_A 59 NFSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP----PFV 127 (657)
T ss_dssp -------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS----CEE
T ss_pred chhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC------Cc----ceE
Confidence 344444455554322 1123466799999984421 1 444446899999999999999998521 11 244
Q ss_pred EEEeccccccccCCCCCCCCCC--CeEEEEEecCceeeeeeccchHHHHHHHHHHHh
Q 028224 151 VVIPLHQLRAVNPSSSRNNPAE--KYVQVISIDNHEFWFMGFLNYNGAVEWLQGALE 205 (212)
Q Consensus 151 VvIPL~kik~vnps~n~~nP~e--KYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~ 205 (212)
+-|||..|..|..........+ -.|+|..-|- ..+=.+|-.=+...+.+-++|.
T Consensus 128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~ 183 (657)
T 1lw3_A 128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLM 183 (657)
T ss_dssp EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHH
T ss_pred EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHH
Confidence 6799988877764321111111 2466666654 4444456543232333334443
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=83.46 E-value=1.2 Score=35.22 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCe
Q 028224 114 AGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKY 174 (212)
Q Consensus 114 aGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKY 174 (212)
+.---|+|||+|.||.|-.+.. .- .-+.|||..|+.+...+..-..+-|+
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-~~----------~s~~lpl~~v~~~e~~~~~f~~s~Ki 84 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-HE----------CCMAILLSQIVFIEEQAAGIGKSAKI 84 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-CS----------CCEEEEGGGEEEEEEECCTTSSCCEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-Cc----------eEEEEEhHHeeeeeeeccccccCceE
Confidence 3446799999999999965422 10 12566666666665554443333333
No 4
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=73.70 E-value=2.2 Score=34.06 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=29.0
Q ss_pred CCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCC
Q 028224 114 AGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRN 168 (212)
Q Consensus 114 aGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~ 168 (212)
.+--.|.|||+|.||-|-.+.+=... -+.|||..|+.+...+..-
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~~~----------SfslPL~~v~~~e~~~~~f 92 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPTQN----------SLGLELDDLAYVNYSSGFL 92 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHHHH----------CEEEEGGGEEEEEEECSSS
T ss_pred cCCCccEEEEEcCeEEEecCCCCcce----------EEEeEhHheeeeeEEcCcc
Confidence 45678999999999999765331111 1566666666665544443
No 5
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=72.41 E-value=16 Score=34.62 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=39.3
Q ss_pred eecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCeEEEEEecCceeeeee
Q 028224 110 LSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMG 189 (212)
Q Consensus 110 LSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKYIqIvTvD~~eFWFMG 189 (212)
++.+-+|+.|+|||++.|+.|.+|.. +. +.||+..|.+|.-.... ....-|+|..-|-.-+=| .
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~-------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f-~ 81 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ-------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF-I 81 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS-------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-E
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC-------Cc------eEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-E
Confidence 34567899999999999999999542 22 45677777777532110 112357777777655444 4
Q ss_pred ccch
Q 028224 190 FLNY 193 (212)
Q Consensus 190 FvnY 193 (212)
|-.=
T Consensus 82 f~~~ 85 (512)
T 2yf0_A 82 VPRE 85 (512)
T ss_dssp ESCH
T ss_pred eCCh
Confidence 5443
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=45.51 E-value=7.9 Score=29.18 Aligned_cols=20 Identities=45% Similarity=0.768 Sum_probs=13.9
Q ss_pred CCCCCCeEEEEEecCceeee
Q 028224 168 NNPAEKYVQVISIDNHEFWF 187 (212)
Q Consensus 168 ~nP~eKYIqIvTvD~~eFWF 187 (212)
.-|..+||.++|-||++|--
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34567899999999999964
No 7
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=39.87 E-value=13 Score=27.08 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=14.6
Q ss_pred CCCeEEEEEecCceeee
Q 028224 171 AEKYVQVISIDNHEFWF 187 (212)
Q Consensus 171 ~eKYIqIvTvD~~eFWF 187 (212)
+.+||.++|-||++|--
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 36899999999999964
No 8
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.64 E-value=20 Score=28.70 Aligned_cols=43 Identities=23% Similarity=0.525 Sum_probs=31.0
Q ss_pred eeeeEEEEEEeccccccccCCCCCCC--CCC--CeEEEEEecCceeeeee
Q 028224 144 TEWSYYKVVIPLHQLRAVNPSSSRNN--PAE--KYVQVISIDNHEFWFMG 189 (212)
Q Consensus 144 ~~~~yYKVvIPL~kik~vnps~n~~n--P~e--KYIqIvTvD~~eFWFMG 189 (212)
+..-|||. |||.+|-.|.|..+-.. +.. -+.||+| .+-.|. +|
T Consensus 43 ~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vg 89 (129)
T 2d9z_A 43 SGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VG 89 (129)
T ss_dssp SCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-EC
T ss_pred CCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-Ec
Confidence 34558888 99999999999865543 222 6799998 677664 44
No 9
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=37.08 E-value=13 Score=26.91 Aligned_cols=15 Identities=53% Similarity=0.833 Sum_probs=13.5
Q ss_pred CeEEEEEecCceeee
Q 028224 173 KYVQVISIDNHEFWF 187 (212)
Q Consensus 173 KYIqIvTvD~~eFWF 187 (212)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 10
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=32.43 E-value=42 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=22.7
Q ss_pred cceeeecCCCCceeeEEEeeceeeeecCCCc
Q 028224 106 YACYLSTSAGPVMGILYVSTAKLAFCSDNPL 136 (212)
Q Consensus 106 ~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl 136 (212)
-+++|-+. ..-.|+|||++.||.+-|+...
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~~ 61 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSGL 61 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTTE
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCCc
Confidence 56777554 3346999999999999988543
No 11
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=31.92 E-value=1.1e+02 Score=23.56 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=40.5
Q ss_pred eeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCeEEEEEecCceeeeeeccc
Q 028224 119 GILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLN 192 (212)
Q Consensus 119 G~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKYIqIvTvD~~eFWFMGFvn 192 (212)
|+||++..+|+...+.. . . --|.++..+|+.-..| ...-+.==+||+-.|+-.|=|- |.|
T Consensus 22 GtL~l~~d~i~W~p~~~-~-----~-----~~vs~~~~~I~~qq~S--P~~k~KVqLqi~l~~~~~~~F~-Ftn 81 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGK-D-----R-----FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSN 81 (108)
T ss_dssp CEEEEETTEEEEECSSS-S-----S-----CSEEEETTTCCCEEEC--CSSSSSCEEEEECSSSCEEEEE-CCC
T ss_pred ceEEEEcceEEEccCCC-C-----C-----ceEEEehhhhhcceeC--CCCCccEEEEEEEeCCCceEEE-EcC
Confidence 99999999999876433 1 1 1277789999865433 3444555678888877666553 666
No 12
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=31.52 E-value=17 Score=25.96 Aligned_cols=13 Identities=62% Similarity=0.994 Sum_probs=11.9
Q ss_pred eEEEEEecCceee
Q 028224 174 YVQVISIDNHEFW 186 (212)
Q Consensus 174 YIqIvTvD~~eFW 186 (212)
||.++|.||++|-
T Consensus 3 ~v~L~SsDg~~F~ 15 (97)
T 4ajy_C 3 YVKLISSDGHEFI 15 (97)
T ss_dssp EEEEECTTCCEEE
T ss_pred EEEEEecCCcEEE
Confidence 8999999999984
No 13
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=31.11 E-value=29 Score=27.51 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=29.3
Q ss_pred eeeEEEEEEeccccccccCCCCCCC--CC--CCeEEEEEecCceee
Q 028224 145 EWSYYKVVIPLHQLRAVNPSSSRNN--PA--EKYVQVISIDNHEFW 186 (212)
Q Consensus 145 ~~~yYKVvIPL~kik~vnps~n~~n--P~--eKYIqIvTvD~~eFW 186 (212)
..-|||. |||.+|-.|.+..+... +. .-..||+| .+-.|.
T Consensus 44 ~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy 87 (125)
T 2coa_A 44 TNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF 87 (125)
T ss_dssp CSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC
T ss_pred CCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE
Confidence 3458887 99999999998865553 22 26789999 566664
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.28 E-value=20 Score=27.27 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=13.5
Q ss_pred hhcceeeecCCCCce
Q 028224 104 NSYACYLSTSAGPVM 118 (212)
Q Consensus 104 Ka~~CYLSTtaGPVa 118 (212)
+.|++||.++.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 589999999999984
No 15
>3vub_A CCDB; topoisomerase poison; 1.40A {Escherichia coli} SCOP: b.34.6.1 PDB: 1x75_C* 1vub_A 2vub_A 3g7z_A 3hpw_A 4vub_A
Probab=23.68 E-value=87 Score=23.53 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=23.9
Q ss_pred EEEEEEeccccccccCCCCCCCCCCCeEEEEEecCceeeee
Q 028224 148 YYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFM 188 (212)
Q Consensus 148 yYKVvIPL~kik~vnps~n~~nP~eKYIqIvTvD~~eFWFM 188 (212)
...|||||-......+ ++..+.-=++++||.+|-.|
T Consensus 29 ~tRvVvPL~~~~~~~~-----~~~~~L~P~~~i~G~~~vl~ 64 (101)
T 3vub_A 29 GRRMVIPLASARLLSD-----KVSRELYPVVHIGDESWRMM 64 (101)
T ss_dssp TEEEEEEEEESSSSCS-----SSCTTTSCEEEETTEEEEEC
T ss_pred CceEEEECCChhHcCc-----ccCcccceEEEECCEEEEEe
Confidence 3569999987765543 22234444788999988654
No 16
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.96 E-value=38 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=18.1
Q ss_pred CCCCCeEEeCCCCCCCCCCCCCccchHHHHHhhhh
Q 028224 5 DGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWG 39 (212)
Q Consensus 5 ~~~~pyv~~~p~~~s~~~~~~~~~~~v~~~~~~~g 39 (212)
++.||=.+..|.||.+.+.+...+..|+++|..|=
T Consensus 15 ~~~~~~~~~~~~p~~P~f~g~t~l~evK~lL~~Wv 49 (124)
T 3vu7_H 15 SSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWI 49 (124)
T ss_dssp ---------------CCCSSSCSHHHHHHHHHHHH
T ss_pred cccCcccCCCCCCCCCccCCCcCHHHHHHHHHHHH
Confidence 45667777777776667888899999999999996
No 17
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=20.82 E-value=99 Score=24.06 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=27.1
Q ss_pred eeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCeEEEEEecCceeeeeecc
Q 028224 129 AFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFL 191 (212)
Q Consensus 129 AFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKYIqIvTvD~~eFWFMGFv 191 (212)
+-| ||-..-..+-+..-.+|+|.|.= +.+...|.+.|---+.-..- =.|+||+
T Consensus 5 ~aC-~~~p~~~~~~~~~~~py~i~i~~--------~~~~y~pG~~~~VtL~~~~~-~~F~GFl 57 (149)
T 2zou_A 5 GYC-SRILRAQGTRREGYTEFSLRVEG--------DPDFYKPGTSYRVTLSAAPP-SYFRGFT 57 (149)
T ss_dssp -CC-TTC-------CCSCCSEEEEETT--------CCSSBCTTCEEEEEEEECTT-CCBSEEE
T ss_pred hhh-cCCCCCCCCCCCCCCCEEEEEec--------CCceEcCCCcEEEEEeccCC-CceEEEE
Confidence 457 65444333334455689888752 23467899988433332211 2589997
No 18
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.45 E-value=56 Score=21.24 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhhhc
Q 028224 193 YNGAVEWLQGALEARN 208 (212)
Q Consensus 193 Y~kA~k~Lq~a~~~~~ 208 (212)
||||+..++.|+....
T Consensus 18 yDKAVaSfk~alk~~~ 33 (37)
T 3s6n_M 18 YDKAVASFKHALKNGD 33 (37)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999987654
No 19
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=20.35 E-value=32 Score=25.51 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=9.8
Q ss_pred ceeeeeeccchHH
Q 028224 183 HEFWFMGFLNYNG 195 (212)
Q Consensus 183 ~eFWFMGFvnY~k 195 (212)
..|||.||+-=.+
T Consensus 18 ~~F~F~Gflp~~~ 30 (115)
T 3ffy_A 18 EKFCFEGFLPQKK 30 (115)
T ss_dssp SSEEEEESCCSST
T ss_pred CcEEEEeeCCCCc
Confidence 4699999986433
Done!