Query 028225
Match_columns 212
No_of_seqs 114 out of 227
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00116 signal peptidase; Pro 100.0 9.7E-62 2.1E-66 408.6 17.7 167 46-212 1-171 (185)
2 PF04573 SPC22: Signal peptida 100.0 2.1E-60 4.6E-65 398.9 18.9 167 46-212 1-175 (175)
3 KOG3372 Signal peptidase compl 100.0 1.3E-56 2.7E-61 371.6 16.1 167 46-212 1-175 (176)
4 PF12751 Vac7: Vacuolar segreg 49.8 61 0.0013 31.0 6.9 38 57-94 304-341 (387)
5 PLN03160 uncharacterized prote 49.5 31 0.00068 29.9 4.7 22 74-95 59-80 (219)
6 PF12984 DUF3868: Domain of un 24.3 1.6E+02 0.0035 22.9 4.6 36 141-176 60-99 (115)
7 PRK13884 conjugal transfer pep 23.7 3.3E+02 0.0072 22.8 6.7 60 46-107 1-60 (178)
8 KOG2111 Uncharacterized conser 22.1 1.3E+02 0.0028 28.4 4.1 24 126-149 60-83 (346)
9 PRK09470 cpxA two-component se 20.4 1.4E+02 0.0031 26.9 4.1 19 46-64 6-24 (461)
10 PRK13838 conjugal transfer pil 17.2 6E+02 0.013 21.2 6.9 54 54-107 7-60 (176)
No 1
>PTZ00116 signal peptidase; Provisional
Probab=100.00 E-value=9.7e-62 Score=408.56 Aligned_cols=167 Identities=28% Similarity=0.413 Sum_probs=158.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCceEEEEEEeeeccC-CCCCcceEEEEEeecCCCcccccccc
Q 028225 46 MHSFGYRANALLTFAVTILALMCAIASLSDNLN--TPSPSAQIEILNINWFQK-QPHGNDEVSLTLNITADLQSLFTWNT 122 (212)
Q Consensus 46 MhS~~~R~n~v~s~~~tvl~vl~~~~~lss~~~--~~~p~~~v~v~~v~~~~~-~~~~~D~a~i~FdL~aDLs~lFnWNT 122 (212)
|||+++|+|++++|+++||++||++|++++.+. ..+|++++++.+|++++. ..+++|+|.|+|||+|||+++|||||
T Consensus 1 MhS~~~R~Nal~~f~~~vLa~l~~~~~~s~~f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNt 80 (185)
T PTZ00116 1 MDNVLNRLNVLSYSMALCFLILCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNL 80 (185)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccc
Confidence 999999999999999999999999999999887 677779999999999984 55789999999999999999999999
Q ss_pred eeEEEEEEEEEeCCCCCceeEEEeeccccCcccceec-ccccceeEEEeCCCCCCCceEEEEEEEEEEeeeeEeeeeeee
Q 028225 123 KQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFS-IHTSNKYRFIDQGHNLRSKEFNLTLHWHVMPKTGKMFANKIV 201 (212)
Q Consensus 123 KQvFVYltAeY~t~~n~~NeVviWDkII~~ke~a~l~-~~~~~KY~l~D~~~~L~gk~vtl~L~wnv~P~vG~l~~~~~~ 201 (212)
|||||||+|||+|+++..|||||||+||++||+|++. .+.++||+++|+|++|||++|||+|+|||||++|.|+..+..
T Consensus 81 KqlFvyv~a~Y~t~~~~~n~v~iWD~Ii~~k~~A~l~~~~~~~KY~l~D~~~~Lrg~~vtl~L~wnv~P~~G~l~~~~~~ 160 (185)
T PTZ00116 81 KQLFLYVLVTYETPEKVKNEVIIQDYIITNKKQAKKTYKNFITKYSLKDYNNGLRNNNINLQVCYKYMPIVGLSRSYEGA 160 (185)
T ss_pred cEEEEEEEEEEcCCCCccccEEEEeeeecCcccceEeecccccceeEEeCCCCccCCceEEEEEEEEEecceeEeeeecc
Confidence 9999999999999999999999999999999999995 599999999999999999999999999999999999999888
Q ss_pred cceecCCCCCC
Q 028225 202 MSGYRLPEDYR 212 (212)
Q Consensus 202 ~~~~~lP~~Y~ 212 (212)
..+|+||+||+
T Consensus 161 ~~~f~~P~~Y~ 171 (185)
T PTZ00116 161 KISYKLPAEYF 171 (185)
T ss_pred ccceeChHHHH
Confidence 88999999985
No 2
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=100.00 E-value=2.1e-60 Score=398.93 Aligned_cols=167 Identities=44% Similarity=0.754 Sum_probs=156.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEE-----EeeeccCCCCCcceEEEEEeecCCCcccccc
Q 028225 46 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEIL-----NINWFQKQPHGNDEVSLTLNITADLQSLFTW 120 (212)
Q Consensus 46 MhS~~~R~n~v~s~~~tvl~vl~~~~~lss~~~~~~p~~~v~v~-----~v~~~~~~~~~~D~a~i~FdL~aDLs~lFnW 120 (212)
|||+++|+|++++++++++++++++|++++++++++|++++++. +.+.++...+++|+|.|+|||+|||+|+|||
T Consensus 1 Mhs~~~R~N~vfs~~~~vl~~l~~~~~~s~~~~~~~~~~~i~v~~~~v~~~~~~~~~~~~~D~a~i~fdl~aDls~lfnW 80 (175)
T PF04573_consen 1 MHSFLSRLNAVFSFALTVLAFLAALIFLSSYFHPPSPSVSISVSNVQVRKSRDYGYSGKKKDYAKITFDLDADLSPLFNW 80 (175)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEEEecccccCCCCCceEEEEEEEeccCcccceee
Confidence 99999999999999999999999999999999999999887765 5566665567899999999999999999999
Q ss_pred cceeEEEEEEEEEeCCCCCceeEEEeeccccCcccceecc-cccceeEEEeCCCCCCC-ceEEEEEEEEEEeeeeEeeee
Q 028225 121 NTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHNLRS-KEFNLTLHWHVMPKTGKMFAN 198 (212)
Q Consensus 121 NTKQvFVYltAeY~t~~n~~NeVviWDkII~~ke~a~l~~-~~~~KY~l~D~~~~L~g-k~vtl~L~wnv~P~vG~l~~~ 198 (212)
|||||||||+|||+|++++.|||||||+||++||+|++.. ++++||+++|++++|+| ++++|+||||+||++|.|+++
T Consensus 81 NtKq~Fvyv~A~Y~t~~~~~NevviWD~Ii~~~~~a~~~~~~~~~KY~~~d~~~~l~~~~~v~l~l~wnv~P~vG~l~~~ 160 (175)
T PF04573_consen 81 NTKQLFVYVTAEYETPKNPVNEVVIWDKIIRRKEDAVLNLKNVKSKYPFWDDGNGLRGNKNVTLTLHWNVMPWVGLLPRG 160 (175)
T ss_pred eeeEEEEEEEEEECCCCCCcceEEEehHhhcccchhhhhhhccccceeeECCCCcccCCceEEEEEEEEeecCEEEEEEE
Confidence 9999999999999999999999999999999999999954 89999999999999999 999999999999999999999
Q ss_pred eee-cceecCCCCCC
Q 028225 199 KIV-MSGYRLPEDYR 212 (212)
Q Consensus 199 ~~~-~~~~~lP~~Y~ 212 (212)
+.. ..+|+||++|.
T Consensus 161 ~~~~~~~~~~P~~Y~ 175 (175)
T PF04573_consen 161 ETVGSSSFTFPSEYT 175 (175)
T ss_pred ecCCceeEECCCccC
Confidence 976 66999999994
No 3
>KOG3372 consensus Signal peptidase complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-56 Score=371.64 Aligned_cols=167 Identities=43% Similarity=0.723 Sum_probs=157.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCceEEEEEEeeeccCCCCCcceEEEEEeecCCCcccccc
Q 028225 46 MHSFGYRANALLTFAVTILALMCAIASLSDNLNT-----PSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTW 120 (212)
Q Consensus 46 MhS~~~R~n~v~s~~~tvl~vl~~~~~lss~~~~-----~~p~~~v~v~~v~~~~~~~~~~D~a~i~FdL~aDLs~lFnW 120 (212)
|||+.+|+|++++|+++++++||++|++++.|.+ ..|+..+++.++..|+.+++++|++.++|||+|||+++|||
T Consensus 1 M~tf~~R~nal~sf~~svlafl~a~~f~s~vf~~~~~~~~~~~~~i~irn~~~y~~~r~~~d~~~v~Fdl~aDLs~lF~W 80 (176)
T KOG3372|consen 1 MHTFGSRANALFSFTLSVLAFLCAACFLSTVFLNREVDTQNPVSRIKIRNVRDYGAQREKADEAFVTFDLSADLSSLFNW 80 (176)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeEEEeehhhhccccccCceeEEEeecccChHhhcCc
Confidence 9999999999999999999999999999999987 56778899999999999889999999999999999999999
Q ss_pred cceeEEEEEEEEEeCCCCCceeEEEeeccccCccccee-cccccceeEEEeCCCCC-CCceEEEEEEEEEEeeeeEeeee
Q 028225 121 NTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKF-SIHTSNKYRFIDQGHNL-RSKEFNLTLHWHVMPKTGKMFAN 198 (212)
Q Consensus 121 NTKQvFVYltAeY~t~~n~~NeVviWDkII~~ke~a~l-~~~~~~KY~l~D~~~~L-~gk~vtl~L~wnv~P~vG~l~~~ 198 (212)
|||||||||+|||+|++|.+|||++|||||.++|++++ .++.++||.++|+|++| .||+++|+|||||||++|+|++.
T Consensus 81 NtKQvFvYl~AeY~t~~n~~nQVvlWDkII~~~d~~~l~~~~~~sky~f~D~g~nl~~~kn~~~tLhwnV~P~~G~l~~~ 160 (176)
T KOG3372|consen 81 NTKQVFVYLVAEYSTKKNELNQVVLWDKIILRKDNAVLDGKDMSSKYYFFDDGNNLFGGKNVTFTLHWNVIPKVGLLRLV 160 (176)
T ss_pred ccceEEEEEEEEecCccccccceEEhhhhhcCcchhhhhhhccccceeEEecCCCccCCCceeEEEEEEeecCcceEEee
Confidence 99999999999999999999999999999999999999 55999999999999998 55999999999999999999999
Q ss_pred eee-cceecCCCCCC
Q 028225 199 KIV-MSGYRLPEDYR 212 (212)
Q Consensus 199 ~~~-~~~~~lP~~Y~ 212 (212)
+.. ...+++|..|.
T Consensus 161 ~~~g~~~~~fp~~y~ 175 (176)
T KOG3372|consen 161 QGSGTYVVPFPNTYT 175 (176)
T ss_pred cccCceeEECCcccc
Confidence 864 45899999883
No 4
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=49.84 E-value=61 Score=31.01 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeec
Q 028225 57 LTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWF 94 (212)
Q Consensus 57 ~s~~~tvl~vl~~~~~lss~~~~~~p~~~v~v~~v~~~ 94 (212)
.|+.++++++|++.+++.-++...+|-.+|.|..|...
T Consensus 304 ~c~~~~i~~lL~ig~~~gFv~AttKpL~~v~v~~I~NV 341 (387)
T PF12751_consen 304 SCIYLSILLLLVIGFAIGFVFATTKPLTDVQVVSIQNV 341 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEeeee
Confidence 34444444444444444444556777777777766554
No 5
>PLN03160 uncharacterized protein; Provisional
Probab=49.46 E-value=31 Score=29.89 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=14.9
Q ss_pred hhccCCCCCceEEEEEEeeecc
Q 028225 74 SDNLNTPSPSAQIEILNINWFQ 95 (212)
Q Consensus 74 ss~~~~~~p~~~v~v~~v~~~~ 95 (212)
..+|.+..|...+.-.++.++.
T Consensus 59 ~~vfrPk~P~~~v~~v~l~~~~ 80 (219)
T PLN03160 59 FTVFRVKDPVIKMNGVTVTKLE 80 (219)
T ss_pred eEEEEccCCeEEEEEEEEeeee
Confidence 4556788888777666666654
No 6
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=24.33 E-value=1.6e+02 Score=22.93 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=17.6
Q ss_pred eeEEEeeccccCccccee----cccccceeEEEeCCCCCC
Q 028225 141 NQVSLWDAIIPAKEFAKF----SIHTSNKYRFIDQGHNLR 176 (212)
Q Consensus 141 NeVviWDkII~~ke~a~l----~~~~~~KY~l~D~~~~L~ 176 (212)
|+.++.=-++.++++... ..+.+.+|.+.+-...|.
T Consensus 60 ~~~l~ltPvL~s~~~~~~LP~V~I~Gr~r~~~y~R~~al~ 99 (115)
T PF12984_consen 60 NRSLILTPVLVSGEDSLELPPVVINGRNRYKVYQRNLALM 99 (115)
T ss_pred CCEEEEEeEEEcCCCEEECCCEEEechHHHHHHHHHHHhc
Confidence 555555555555444222 335555665544444443
No 7
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=23.74 E-value=3.3e+02 Score=22.76 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=33.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeeccCCCCCcceEEEE
Q 028225 46 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLT 107 (212)
Q Consensus 46 MhS~~~R~n~v~s~~~tvl~vl~~~~~lss~~~~~~p~~~v~v~~v~~~~~~~~~~D~a~i~ 107 (212)
|.....|+...+.++...+++++++.+...+..+.+++.-+-+=.+. .....+.|.+.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~P~glY~~~--~~~~~~Gd~V~f~ 60 (178)
T PRK13884 1 MSRILKRITAGVAVAGLAALLLAALGYAAGARVNTTKSIPVGLYWTS--SAPVEKGAYVLFC 60 (178)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEEECCCCCcceEEEEe--CCCCCCCCEEEEe
Confidence 33445566666666666666666666666666677776544333222 1223445665554
No 8
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.11 E-value=1.3e+02 Score=28.39 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEEEEEeCCCCCceeEEEeecc
Q 028225 126 FIFVAAEYETPKNALNQVSLWDAI 149 (212)
Q Consensus 126 FVYltAeY~t~~n~~NeVviWDkI 149 (212)
++-|+-.+..++.+.|.|+|||..
T Consensus 60 ~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 60 YLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eEEEecCCCCCCCCCceEEEEecc
Confidence 456666777778889999999954
No 9
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=20.42 E-value=1.4e+02 Score=26.88 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=14.1
Q ss_pred CccHHHHHHHHHHHHHHHH
Q 028225 46 MHSFGYRANALLTFAVTIL 64 (212)
Q Consensus 46 MhS~~~R~n~v~s~~~tvl 64 (212)
.||+..|+-.++.+++.++
T Consensus 6 ~~sl~~rl~~~~~~~li~~ 24 (461)
T PRK09470 6 INSLTARIFAIFWLTLALV 24 (461)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4999999998777654443
No 10
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=17.16 E-value=6e+02 Score=21.24 Aligned_cols=54 Identities=19% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeeccCCCCCcceEEEE
Q 028225 54 NALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLT 107 (212)
Q Consensus 54 n~v~s~~~tvl~vl~~~~~lss~~~~~~p~~~v~v~~v~~~~~~~~~~D~a~i~ 107 (212)
.-+..++...+++++++.+.-.+..+.+++.-+-+-.+.......++.|.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~pig~y~~~~~~~~~~rGDiVvf~ 60 (176)
T PRK13838 7 LLLLAVAAVAASGLAATAWIGGYRINLTPSEPLGLWRIEALDRPVAVGDLVFIC 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCceEEECCCCCEEEEEEEeccCCCCCCCcEEEEE
Confidence 333333333333333333444455566666655555443333334556666654
Done!