Query 028225
Match_columns 212
No_of_seqs 114 out of 227
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_I STA, cytochrome C oxida 9.6 4.4E+02 0.015 18.3 4.4 24 42-65 5-31 (73)
2 3izx_A Structural protein VP3; 9.2 1.1E+02 0.0038 31.2 1.5 13 116-128 209-221 (1058)
3 3alx_A Hemagglutinin, CDW150; 7.5 1.2E+03 0.042 21.9 7.7 56 124-199 340-401 (559)
4 2f8e_A VPG protein; RNA-depend 7.5 96 0.0033 17.6 0.1 20 190-209 2-21 (26)
5 2zb6_A Hemagglutinin protein; 6.6 6.8E+02 0.023 23.2 5.4 59 124-199 375-436 (481)
6 2kr7_A FKBP-type peptidyl-prol 6.1 3.3E+02 0.011 20.7 2.7 25 161-185 116-140 (151)
7 2lru_A Serine/threonine-protei 8.0 1.3E+02 0.0043 22.5 0.0 22 95-116 39-60 (98)
8 2akh_X Protein-export membrane 5.7 6.6E+02 0.023 17.1 3.8 25 43-67 45-69 (77)
9 2iub_A CORA, divalent cation t 5.5 6.2E+02 0.021 21.7 4.5 30 49-78 295-324 (363)
10 2kxg_A Aspartic protease inhib 5.5 4.5E+02 0.015 18.7 2.9 30 119-148 51-80 (95)
No 1
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=9.58 E-value=4.4e+02 Score=18.28 Aligned_cols=24 Identities=21% Similarity=0.175 Sum_probs=14.1
Q ss_pred CCCCCccHHHH---HHHHHHHHHHHHH
Q 028225 42 KKKKMHSFGYR---ANALLTFAVTILA 65 (212)
Q Consensus 42 ~~~~MhS~~~R---~n~v~s~~~tvl~ 65 (212)
.|-+||.++.+ .|-+.++++++.+
T Consensus 5 akPqmrgLl~~~lr~~i~~a~~lsl~~ 31 (73)
T 1v54_I 5 AKPQMRGLLARRLRFHIVGAFMVSLGF 31 (73)
T ss_dssp CCCCCBSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 35568888764 5655555554433
No 2
>3izx_A Structural protein VP3; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3iz3_A 3j17_A* 3cnf_T
Probab=9.23 E-value=1.1e+02 Score=31.18 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=11.7
Q ss_pred ccccccceeEEEE
Q 028225 116 SLFTWNTKQLFIF 128 (212)
Q Consensus 116 ~lFnWNTKQvFVY 128 (212)
.-|+||+++.|+|
T Consensus 209 ~twh~n~~HtF~Y 221 (1058)
T 3izx_A 209 SSWHWNVLHTFHY 221 (1058)
T ss_dssp SSCGGGCCEEEEE
T ss_pred eeeecCCceEEEe
Confidence 4699999999997
No 3
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich; HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Probab=7.55 E-value=1.2e+03 Score=21.87 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=32.6
Q ss_pred eEEEEEEEEEeCCCCCceeEEEeeccccCccccee-cc--ccc---ceeEEEeCCCCCCCceEEEEEEEEEEeeeeEeee
Q 028225 124 QLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKF-SI--HTS---NKYRFIDQGHNLRSKEFNLTLHWHVMPKTGKMFA 197 (212)
Q Consensus 124 QvFVYltAeY~t~~n~~NeVviWDkII~~ke~a~l-~~--~~~---~KY~l~D~~~~L~gk~vtl~L~wnv~P~vG~l~~ 197 (212)
|=|=||+|.|.+.. .|+|.+ .. ..| .-|+|+ -..+|+-+ .|+-.-+||-+-|+=
T Consensus 340 ~d~~YV~ATYD~SR---------------~eHAIVYYVYdt~RssSY~YPfR---L~~KG~P~--~LrIECFpW~~kLWC 399 (559)
T 3alx_A 340 QDLQYVLATYDTSR---------------VEHAVVYYVYSPSRSFSYFYPFR---LPIKGVPI--ELQVECFTWDQKLWC 399 (559)
T ss_dssp SSCCEEEEEEECSS---------------SSCEEEEEEECTTSSCCEEEEEE---CSCCEEEE--EEEEEEEEETTEEEE
T ss_pred CceeeEEEEeeccc---------------cceeEEEEEecCccceeeEeeEE---eecCCCcc--EEEEEEEeccCceeE
Confidence 34679999999853 344444 11 122 124443 23466654 556677888888876
Q ss_pred ee
Q 028225 198 NK 199 (212)
Q Consensus 198 ~~ 199 (212)
++
T Consensus 400 hh 401 (559)
T 3alx_A 400 RH 401 (559)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 4
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=7.50 E-value=96 Score=17.61 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=11.8
Q ss_pred eeeeEeeeeeeecceecCCC
Q 028225 190 PKTGKMFANKIVMSGYRLPE 209 (212)
Q Consensus 190 P~vG~l~~~~~~~~~~~lP~ 209 (212)
||+|.|.+.+--.-..++|.
T Consensus 2 pyagplerq~plkvkak~p~ 21 (26)
T 2f8e_A 2 PYAGPLERQRPLKVKAKLPQ 21 (26)
T ss_pred CcCCchhhcCcceeeecccc
Confidence 78888877653222445553
No 5
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane, transmembrane, virion, viral protein; HET: NAG; 2.60A {Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A* 2rkc_A* 3inb_A*
Probab=6.64 E-value=6.8e+02 Score=23.22 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=34.4
Q ss_pred eEEEEEEEEEeCCCCCceeEEEeeccccCccccee-cc--cccceeEEEeCCCCCCCceEEEEEEEEEEeeeeEeeeee
Q 028225 124 QLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKF-SI--HTSNKYRFIDQGHNLRSKEFNLTLHWHVMPKTGKMFANK 199 (212)
Q Consensus 124 QvFVYltAeY~t~~n~~NeVviWDkII~~ke~a~l-~~--~~~~KY~l~D~~~~L~gk~vtl~L~wnv~P~vG~l~~~~ 199 (212)
|=|=||+|.|.+. |.|+|.+ .. ..|+--++.-..-..+|+-+.| +-.-+||-+-|+=++
T Consensus 375 ~d~~YV~ATYD~S---------------R~eHAIVYYVYdt~RssSY~YPfRL~~KG~P~~L--rIECFpW~~kLWChh 436 (481)
T 2zb6_A 375 QDLQYVLATYDTS---------------RVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIEL--QVECFTWDQKLWCRH 436 (481)
T ss_dssp SSCCEEEEEEETT---------------STTCCEEEEEECSSCEEEEECCSCCCCCSCCCEE--EEEEEECSSSEEEEE
T ss_pred CceeeEEEEeecc---------------ccceeEEEEEecCccceeeEeeEEeecCCCccEE--EEEEEeccCceeEEe
Confidence 3467999999886 3455555 11 2332222222233457776554 556788888887665
No 6
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=6.15 E-value=3.3e+02 Score=20.71 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=18.9
Q ss_pred cccceeEEEeCCCCCCCceEEEEEE
Q 028225 161 HTSNKYRFIDQGHNLRSKEFNLTLH 185 (212)
Q Consensus 161 ~~~~KY~l~D~~~~L~gk~vtl~L~ 185 (212)
.....--..|..+.|.|++++|.+.
T Consensus 116 ~v~~~~v~vD~NHPLAG~~L~F~v~ 140 (151)
T 2kr7_A 116 DFSATHVMVDYNHPLAGKTLAFRFK 140 (151)
T ss_dssp EECSSEEEEEECCTTSCCCEEEEEE
T ss_pred EECCCEEEEECCCcCCCCEEEEEEE
Confidence 3334455679999999999998876
No 7
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=8.00 E-value=1.3e+02 Score=22.48 Aligned_cols=22 Identities=9% Similarity=0.389 Sum_probs=16.6
Q ss_pred cCCCCCcceEEEEEeecCCCcc
Q 028225 95 QKQPHGNDEVSLTLNITADLQS 116 (212)
Q Consensus 95 ~~~~~~~D~a~i~FdL~aDLs~ 116 (212)
+++.+.++...|.|||+.|-..
T Consensus 39 ~gk~KeNeaIeF~Fdle~Dta~ 60 (98)
T 2lru_A 39 KGKYKDNEAIEFSFDLERDVPE 60 (98)
Confidence 3445667889999999988644
No 8
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=5.67 E-value=6.6e+02 Score=17.14 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=14.5
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHH
Q 028225 43 KKKMHSFGYRANALLTFAVTILALM 67 (212)
Q Consensus 43 ~~~MhS~~~R~n~v~s~~~tvl~vl 67 (212)
++.....++|+-.+++..+.+++++
T Consensus 45 ~~g~~~~L~k~T~~la~~F~v~sl~ 69 (77)
T 2akh_X 45 SSGSGNFMTRMTALLATLFFIISLV 69 (77)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777766666665554444
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=5.55 E-value=6.2e+02 Score=21.69 Aligned_cols=30 Identities=7% Similarity=0.208 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028225 49 FGYRANALLTFAVTILALMCAIASLSDNLN 78 (212)
Q Consensus 49 ~~~R~n~v~s~~~tvl~vl~~~~~lss~~~ 78 (212)
..+|.|.+.-..+.+.++++-+.++++++.
T Consensus 295 is~~~N~imk~LTiit~IflP~T~IaGiyG 324 (363)
T 2iub_A 295 VSNKTNEVMKVLTIIATIFMPLTFIAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467888888888777888888888888863
No 10
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}
Probab=5.52 E-value=4.5e+02 Score=18.72 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=15.2
Q ss_pred cccceeEEEEEEEEEeCCCCCceeEEEeec
Q 028225 119 TWNTKQLFIFVAAEYETPKNALNQVSLWDA 148 (212)
Q Consensus 119 nWNTKQvFVYltAeY~t~~n~~NeVviWDk 148 (212)
+|+++--+.-..++-...+...-+++||++
T Consensus 51 ~~~~~Y~L~l~~~~~~~~~~~~y~a~Vw~k 80 (95)
T 2kxg_A 51 HWDNYYNLILSAKHSPHEFSKFYNVVVLEK 80 (95)
T ss_dssp SSCCEEEEEEEEESCTTSCCEEEEEEEEEE
T ss_pred ccCccEEEEEEEecCCCCCceEEEEEEEEc
Confidence 466654333222222112334568999996
Done!