Query 028225
Match_columns 212
No_of_seqs 114 out of 227
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 13:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 8.8 1.9E+02 0.014 17.2 3.9 27 52-78 1-27 (64)
2 d1rmka_ g.3.6.1 (A:) Conotoxin 8.0 20 0.0014 19.7 -1.3 13 185-197 7-19 (31)
3 d1l0qa2 b.69.2.3 (A:1-301) Sur 5.9 1.4E+02 0.01 20.7 2.3 16 126-147 3-18 (301)
4 d1l7da2 c.23.12.2 (A:1-143,A:3 5.4 77 0.0056 23.8 0.5 13 19-31 120-132 (194)
5 d3ci0k3 d.24.1.6 (K:29-93,K:27 5.1 66 0.0048 22.1 -0.1 21 102-123 53-73 (106)
6 d2gqpa1 d.122.1.1 (A:74-337) H 4.7 4.5E+02 0.033 19.6 4.9 43 141-185 134-179 (227)
7 d1v54i_ f.23.3.1 (I:) Mitochon 4.5 4.5E+02 0.033 16.7 4.9 25 41-65 4-31 (73)
8 d1osya_ b.1.21.1 (A:) Fungal i 4.3 2.6E+02 0.019 19.0 2.6 10 118-127 86-95 (114)
9 d1jv2a2 b.1.15.1 (A:599-737) T 4.2 1.8E+02 0.013 19.9 1.9 29 166-194 80-109 (139)
10 d1xhoa_ d.79.1.2 (A:) Chorisma 4.1 2.8E+02 0.02 19.1 2.8 20 99-118 36-55 (112)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.84 E-value=1.9e+02 Score=17.19 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028225 52 RANALLTFAVTILALMCAIASLSDNLN 78 (212)
Q Consensus 52 R~n~v~s~~~tvl~vl~~~~~lss~~~ 78 (212)
|.|.+.-..+.+.++.+-+.++++++.
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~gifG 27 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667777777677777777788888764
No 2
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=8.02 E-value=20 Score=19.69 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=10.1
Q ss_pred EEEEEeeeeEeee
Q 028225 185 HWHVMPKTGKMFA 197 (212)
Q Consensus 185 ~wnv~P~vG~l~~ 197 (212)
.|+++|++|++.-
T Consensus 7 eycivpi~gfiyc 19 (31)
T d1rmka_ 7 EYCIVPILGFVYC 19 (31)
T ss_dssp SCCCCCTTCCCEE
T ss_pred eEEEeeeeeeeee
Confidence 4788999998753
No 3
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=5.89 E-value=1.4e+02 Score=20.74 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=10.9
Q ss_pred EEEEEEEEeCCCCCceeEEEee
Q 028225 126 FIFVAAEYETPKNALNQVSLWD 147 (212)
Q Consensus 126 FVYltAeY~t~~n~~NeVviWD 147 (212)
|+||+..- .+.|.+||
T Consensus 3 ~~yV~~~~------~~~v~v~D 18 (301)
T d1l0qa2 3 FAYIANSE------SDNISVID 18 (301)
T ss_dssp EEEEEETT------TTEEEEEE
T ss_pred EEEEEECC------CCEEEEEE
Confidence 78876321 25799999
No 4
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}
Probab=5.36 E-value=77 Score=23.77 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=10.3
Q ss_pred ccCCccccccccc
Q 028225 19 FNFSLRPKIKRQQ 31 (212)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (212)
|+....|||+|-|
T Consensus 120 ~a~e~ipRisraQ 132 (194)
T d1l7da2 120 YAMELMPRISRAQ 132 (194)
T ss_dssp EEGGGCCCSGGGG
T ss_pred EeeecccccCCCC
Confidence 5667789999975
No 5
>d3ci0k3 d.24.1.6 (K:29-93,K:275-315) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=66 Score=22.11 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=15.7
Q ss_pred ceEEEEEeecCCCcccccccce
Q 028225 102 DEVSLTLNITADLQSLFTWNTK 123 (212)
Q Consensus 102 D~a~i~FdL~aDLs~lFnWNTK 123 (212)
|.+.|+-.+. |+..+||.|.=
T Consensus 53 d~G~i~g~I~-D~q~cFNLN~L 73 (106)
T d3ci0k3 53 PQGQIAVTLR-DAQSNYFWLRS 73 (106)
T ss_dssp TTEEEEEEEE-ETTCSEEEEEE
T ss_pred CCcEEEEEEE-eCCcccchhhh
Confidence 4566666664 99999999943
No 6
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=4.67 E-value=4.5e+02 Score=19.58 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=24.1
Q ss_pred eeEEEeeccccCcccceecc-cccceeEEEeCCCC-C-CCceEEEEEE
Q 028225 141 NQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHN-L-RSKEFNLTLH 185 (212)
Q Consensus 141 NeVviWDkII~~ke~a~l~~-~~~~KY~l~D~~~~-L-~gk~vtl~L~ 185 (212)
++|++..+= .++.+.... .....|.+.+.... . +|..|+|.|+
T Consensus 134 d~V~v~s~~--~~~~~~~W~s~g~~~~~i~~~~~~~~~rGT~I~L~Lk 179 (227)
T d2gqpa1 134 DKVIVTSKH--NNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLK 179 (227)
T ss_dssp EEEEEEEEC--TTSCCEEEEESSSCEEEEECTTCSCSSSEEEEEEEEC
T ss_pred eeEEEEEec--cCCcccEEEecCCCceecccccccccccceEEEEEec
Confidence 445444432 223344433 44456777765443 4 6899999885
No 7
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.46 E-value=4.5e+02 Score=16.69 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=15.9
Q ss_pred CCCCCCccHHHH---HHHHHHHHHHHHH
Q 028225 41 GKKKKMHSFGYR---ANALLTFAVTILA 65 (212)
Q Consensus 41 ~~~~~MhS~~~R---~n~v~s~~~tvl~ 65 (212)
-+|-+|+-++.+ .+-+.++.++..+
T Consensus 4 l~KPqmrGLl~~~lk~hl~~a~~lsl~~ 31 (73)
T d1v54i_ 4 LAKPQMRGLLARRLRFHIVGAFMVSLGF 31 (73)
T ss_dssp CCCCCCBSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888765 6666666665433
No 8
>d1osya_ b.1.21.1 (A:) Fungal immunomodulatory protein, FIP {Golden needle mushroom (Flammulina velutipes) [TaxId: 38945]}
Probab=4.27 E-value=2.6e+02 Score=18.97 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=7.6
Q ss_pred ccccceeEEE
Q 028225 118 FTWNTKQLFI 127 (212)
Q Consensus 118 FnWNTKQvFV 127 (212)
-+=||-|+||
T Consensus 86 adt~tiqvfv 95 (114)
T d1osya_ 86 ADTKTIQVFV 95 (114)
T ss_dssp ETTSCEEEEE
T ss_pred ccCceEEEEE
Confidence 3568889997
No 9
>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.23 E-value=1.8e+02 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=22.7
Q ss_pred eEEEeCCCCC-CCceEEEEEEEEEEeeeeE
Q 028225 166 YRFIDQGHNL-RSKEFNLTLHWHVMPKTGK 194 (212)
Q Consensus 166 Y~l~D~~~~L-~gk~vtl~L~wnv~P~vG~ 194 (212)
.-.=|.|+.| +|.+++|.|++.+-+..|.
T Consensus 80 ~v~C~lGnP~~~~~~~~f~l~f~~~~~~~~ 109 (139)
T d1jv2a2 80 QVVCDLGNPMKAGTQLLAGLRFSVHQQSEM 109 (139)
T ss_dssp EEEEECCSSBCSSCBCCEEEEEEECCCSSS
T ss_pred EEEEECCCcccCCCEEEEEEEEEeeccCCC
Confidence 4457888888 6789999999998776654
No 10
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}
Probab=4.06 E-value=2.8e+02 Score=19.12 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.5
Q ss_pred CCcceEEEEEeecCCCcccc
Q 028225 99 HGNDEVSLTLNITADLQSLF 118 (212)
Q Consensus 99 ~~~D~a~i~FdL~aDLs~lF 118 (212)
..+|-+.+-|...-||...|
T Consensus 36 ~~edi~Sv~FT~T~DL~a~F 55 (112)
T d1xhoa_ 36 EEDDIISIIFTVTKDLDAAF 55 (112)
T ss_dssp CGGGEEEEEEEECTTCCSSC
T ss_pred CHHHEEEEEEEecCcccccC
Confidence 35789999999999999887
Done!