BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028227
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic
OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1
Length = 280
Score = 174 bits (441), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 128/192 (66%), Gaps = 6/192 (3%)
Query: 1 MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRIT-TRSI 59
MEI + + + T+ P+ L P + + P+ +S +IS RI +RS+
Sbjct: 1 MEIFSASASLTLT--GFVPRLLPLLSPQA--RTTLCKPLLSSSSTRLISCHSRIAPSRSL 56
Query: 60 ADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119
AD + S ++ V DP VK+KA DI+ ELKG S+FLVG+NN+IKT+ GK LA+ALRY
Sbjct: 57 ADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRY 115
Query: 120 YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSA 179
YYFDSD+L+ EAAGG +A+A +E+DEK +Q++ETEVLKQLSSMGRLVVCAG+GAVQS
Sbjct: 116 YYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLR 175
Query: 180 NLYEISGTFKTW 191
NL + W
Sbjct: 176 NLALLRHGISIW 187
>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK2 PE=1 SV=1
Length = 307
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 62 DTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY 121
D+ N+V D + +K+K+ ++ L G ++LVGM + K+ + K LA+ L Y +
Sbjct: 69 DSLHNSV------DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSF 122
Query: 122 FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181
FDSD LV +A G S A+ F+E E ++ E+ VL+ LSSM RLVV G GAV N
Sbjct: 123 FDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNW 182
Query: 182 YEISGTFKTW-NIIMD---RRSSRHGSKNGP 208
+ W ++ +D RR ++ G+ + P
Sbjct: 183 KYMKKGLSVWLDVPLDALARRIAQVGTASRP 213
>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1
SV=1
Length = 300
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 72 AAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131
A+ D +K KA ++ L G V+LVGM KT +G+ LA+ L Y +FD D L+ +A
Sbjct: 83 ASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQA 142
Query: 132 AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
GG + A+ F E ++ ETEVL +LS M RLVV G GAV N + W
Sbjct: 143 VGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVW 202
Query: 192 NII----MDRRSSRHGSKNGP 208
+ + +R + G+K+ P
Sbjct: 203 LDVPLEALAKRITTEGTKSRP 223
>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK3 PE=1 SV=2
Length = 287
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
D + +K+KA D+ L ++LVGM + KT +GK LA+ L Y +FDSD LV +A G
Sbjct: 73 DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132
Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
S A+ F+ E ++ E+EVL+ LSSM RLVV G GAV N + W ++
Sbjct: 133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192
Query: 194 IMD---RRSSRHGSKNGP 208
+D RR + G+ + P
Sbjct: 193 PLDALARRIAAVGTASRP 210
>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK1 PE=1 SV=1
Length = 308
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
D + +K+K+ ++ L G ++LVGM + K+ +GK +++ L Y +FDSD LV +A G
Sbjct: 78 DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137
Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
S A+ F+ E ++ E+ VL+ LSSM RLVV G GAV N + W ++
Sbjct: 138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197
Query: 194 IMD---RRSSRHGSKNGP 208
+D RR ++ G+ + P
Sbjct: 198 PLDALARRIAKVGTASRP 215
>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2
PE=1 SV=1
Length = 300
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
+KKKA ++ L G S++LVGM + KT +GK +A +L Y +FD D+L+ +A G S A+
Sbjct: 85 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 144
Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLYEISGTFKTW 191
F E +++ ETE LK+LS M ++VV G GAV N + W
Sbjct: 145 IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIW 197
>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1
PE=1 SV=2
Length = 303
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
+K+KA ++ L G S++LVGM + KT +GK ++ L Y +FD D+L+ +A G S A+
Sbjct: 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 148
Query: 140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
F E ++ ET+ LK+LSS ++VV G GAV N + W
Sbjct: 149 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIW 200
>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=aroK PE=3 SV=1
Length = 187
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G +V+L+GM + K+ +G LA LR+ +FD+D LV E GG S A+ F E E ++
Sbjct: 10 LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLV-EQVGGSSIAQIFAEHGEAYFR 68
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
ET+VL QLSS RLV+ G G V N + W
Sbjct: 69 DLETQVLAQLSSYTRLVIATGGGIVLRPKNWSYLHHGLTVW 109
>sp|A5GQN5|AROK_SYNR3 Shikimate kinase OS=Synechococcus sp. (strain RCC307) GN=aroK PE=3
SV=1
Length = 195
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L+GT+++LVGM + K+ +G LA AL Y + D+D+++ +AAG S + F E
Sbjct: 10 LGERLQGTNLYLVGMMGSGKSTVGPLLAKALGYRFLDADAVISQAAGC-SIPEIFERDGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
+G++Q E +VL+QLS LVV G G V AN E+ W
Sbjct: 69 EGFRQLERQVLQQLSQWHSLVVATGGGIVTVPANWGELRQGVVIW 113
>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
/ SAUG 1402/1) GN=aroK PE=3 SV=1
Length = 190
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ T L G +FLVG+ + KT +GK LA++L Y Y D+DSL+ E G S + F E
Sbjct: 3 LVTALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGE 61
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++Q ET+VL++++S RLVV G G V N + W
Sbjct: 62 AGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIW 106
>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942)
GN=aroK PE=3 SV=1
Length = 190
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ T L G +FLVG+ + KT +GK LA++L Y Y D+DSL+ E G S + F E
Sbjct: 3 LVTALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGE 61
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++Q ET+VL++++S RLVV G G V N + W
Sbjct: 62 AGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIW 106
>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK
PE=3 SV=1
Length = 189
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G +V+L+GM + K+ LG LA LR +FD+D+LV + AG S A+ F E E ++
Sbjct: 10 LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGC-SIAQIFAEQGEAHFR 68
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
+ ET+VL QLS RLVV G G V N + W
Sbjct: 69 ELETQVLAQLSGYTRLVVATGGGIVLRPKNWSYLHHGLTVW 109
>sp|B0JFW8|AROK_MICAN Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843)
GN=aroK PE=3 SV=1
Length = 190
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G SVFL+GM + K+ LG+ L+ L+Y +FD+D L+ E G+ + F + E ++
Sbjct: 10 LRGLSVFLLGMMGSGKSTLGELLSRRLQYRFFDTDILI-ERVAGKKIREIFVDEGEATFR 68
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
+ ET+VL +LSS+ + V+ G G V N + W
Sbjct: 69 ELETQVLAELSSLTKTVIATGGGMVLKPMNWSYLRHGLMIW 109
>sp|Q7VE85|AROK_PROMA Shikimate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375
/ SS120) GN=aroK PE=3 SV=1
Length = 190
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKA 140
K + + +L G ++LVGM + K+ G LA L+Y + D D L+ E S ++
Sbjct: 4 KLRPNQVIKKLGGRIIYLVGMMGSGKSTTGPHLAKLLKYSFIDQDELI-EKVAKSSVSQI 62
Query: 141 FRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
FRE E G++ ET+VLKQ+ LVV G G V S N + W
Sbjct: 63 FREEGENGFRDIETQVLKQIGQRHSLVVATGGGLVTRSENWGVLHQGIVIW 113
>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=aroK PE=3 SV=1
Length = 189
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
I +L+G ++FL+GM + K+ +G LA+ L Y +FD+D L+ E G++ A F E E
Sbjct: 6 IKEQLQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLI-ERVAGKAIADIFAEDGE 64
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
++ ETEVL L++ R V+ G G V N + W
Sbjct: 65 DTFRDLETEVLGHLAAQTRSVIATGGGVVLRRQNWSYLHHGLVIW 109
>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=aroK PE=3 SV=1
Length = 181
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+S+ L+G +++L+GM A KT +G LA L Y + D+D+++ +AA +S + F E+ E
Sbjct: 1 MSSLLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAA-KKSINEIFAEAGE 59
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++Q E++VL Q+ S +L V G G V N + W
Sbjct: 60 AGFRQIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLIVW 104
>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=aroK PE=3 SV=1
Length = 181
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+S+ L+G +++L+GM A KT +G LA L Y + D+D+++ +A +S + F E+ E
Sbjct: 1 MSSLLQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQAT-KKSINEIFAEAGE 59
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++Q E++VL Q+ S +L V G G V N + W
Sbjct: 60 AGFRQIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLILW 104
>sp|Q3B009|AROK_SYNS9 Shikimate kinase OS=Synechococcus sp. (strain CC9902) GN=aroK PE=3
SV=1
Length = 191
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
DP ++K++ L G S++L+GM + KT G+ LA L Y + D+D+ V E G
Sbjct: 3 DPILSLKER-------LSGRSIYLIGMMGSGKTSTGRPLAKRLGYGFVDADA-VIEQVAG 54
Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
+ + F E G++ E++VL +S LVV G G V N ++ W
Sbjct: 55 CTIPEIFERDGEAGFRSIESQVLNAISQRHSLVVATGGGVVTKPENWGQLHSGIVVW 111
>sp|Q7NH27|AROK_GLOVI Shikimate kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=aroK
PE=3 SV=1
Length = 177
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
LKG S++LVGM + K+ +G+ LA+ L Y + D D+L+ E G+ + F E ++
Sbjct: 2 LKGVSLYLVGMMGSGKSTVGRLLAEKLGYGFVDLDALI-EQVSGKRVGEIFEREGEAVFR 60
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
E+ VL ++S+ RLVV G G V + N + W
Sbjct: 61 DLESRVLAEVSAYTRLVVATGGGVVLARRNWGYLHHGVVVW 101
>sp|Q3AH55|AROK_SYNSC Shikimate kinase OS=Synechococcus sp. (strain CC9605) GN=aroK PE=3
SV=1
Length = 199
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L G S++LVGM + KT G+ LA+ L Y + D+D+ V E A G S + F + G++
Sbjct: 20 LSGRSLYLVGMMGSGKTSTGRPLAERLGYGFVDADA-VIEQAAGCSIPEIFERDGDAGFR 78
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NIIMDRRSSR 201
E++VL +S LVV G G V N + W +++ D+ R
Sbjct: 79 SLESQVLSAISQRHSLVVATGGGVVTQPENWGLLHSGIVIWLDVVPDQLLQR 130
>sp|Q46HR4|AROK_PROMT Shikimate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=aroK
PE=3 SV=1
Length = 198
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA 137
AV+ + +L G ++FL+GM + K+ G LA + Y + D+D V E A +S
Sbjct: 1 MAVQSTPKTLKEKLGGRNIFLIGMMGSGKSQTGPVLAKMINYAFVDTDD-VIEKASKQSI 59
Query: 138 AKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR 197
+ F + EK ++ E +VLK++S LV+ G G V N + W + R
Sbjct: 60 SSIFEKDGEKVFRDVEKKVLKEISQHHSLVIATGGGLVTLPENWGILHQGIVIWLDLDLR 119
Query: 198 RS 199
RS
Sbjct: 120 RS 121
>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3
SV=1
Length = 187
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G +++L+GM + K+ +GK LA L Y +FD+D L+ E +S F E ++
Sbjct: 7 LQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILI-ERVTQQSINDIFVTQGETVFR 65
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
ET+VL ++++ R V+ G G V +S N + W
Sbjct: 66 DIETQVLSEVAACTRSVIATGGGIVLNSQNWSYLHHGLIIW 106
>sp|Q7U469|AROK_SYNPX Shikimate kinase OS=Synechococcus sp. (strain WH8102) GN=aroK PE=3
SV=1
Length = 191
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G S++LVGM + KT G+ LA+ L Y + D+D+ V E A G S + F E
Sbjct: 8 LKQRLGGRSLYLVGMMGSGKTSTGRPLAEQLGYGFVDADA-VIEQAAGCSIPEIFERDGE 66
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++ E++VL + LVV G G V N + W
Sbjct: 67 AGFRALESQVLNAIGQRHSLVVATGGGVVTQQENWGLLHSGIVVW 111
>sp|B2IX35|AROK_NOSP7 Shikimate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=aroK PE=3 SV=1
Length = 181
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+S+ L+G +++L+GM KT +G LA L Y + D D ++ +A +S + F E E
Sbjct: 1 MSSLLQGVNLYLIGMMGVGKTTVGPLLAKHLGYGFLDLDGVIAKAT-DKSINQLFAEEGE 59
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++Q E++VL Q+ + +L + G G V N + W
Sbjct: 60 AGFRQIESDVLSQVCAFTKLTIATGGGIVLRRENWGYLHHGLIVW 104
>sp|Q2YBB2|AROK_NITMU Shikimate kinase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=aroK PE=3 SV=1
Length = 195
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE 135
P+ VK +A D + ++FLVGM A KT +G+ L+ L ++DSD + + G
Sbjct: 9 PAVDVKGEAGDRAAT---GNIFLVGMMGAGKTTVGRLLSHFLEKTFYDSDREI-QKRTGV 64
Query: 136 SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSAN--LYEISGTFKTWNI 193
S F E+G+++ ETE+L +L + +++ G GAV S N + + GT
Sbjct: 65 SIPTIFEIEGEEGFRRRETEILSELMNARNIILATGGGAVLSGVNRAMLKHGGTVIYLRA 124
Query: 194 IMDR--RSSRHGSKNGP 208
+D R +RH KN P
Sbjct: 125 SIDDLWRRTRH-DKNRP 140
>sp|A2C650|AROK_PROM3 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9303)
GN=aroK PE=3 SV=1
Length = 192
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G +++LVGM + K+ G+ LA+ L Y + D+D+ V E G+ K F E E
Sbjct: 10 LKQRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDA-VIEQLAGQPIPKIFNEEGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
+G++ E++VL + LVV G G V N + W
Sbjct: 69 EGFRAMESQVLNAIGQRHSLVVATGGGMVSKPENWGILHQGIVIW 113
>sp|Q7V904|AROK_PROMM Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=aroK PE=3 SV=1
Length = 192
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G +++LVGM + K+ G+ LA+ L Y + D+D+ V E G+ K F E E
Sbjct: 10 LKQRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDA-VIEQLAGQPIPKIFSEEGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
G++ E++VL + LVV G G V N + W
Sbjct: 69 AGFRTMESQVLNAIGQRHSLVVATGGGIVSKPENWGVLHQGIVIW 113
>sp|Q8DKH7|AROK_THEEB Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1)
GN=aroK PE=3 SV=1
Length = 183
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G +++LVGM A KT G+ LA L Y + D+D+ V A + F + E
Sbjct: 3 LQERLGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDA-VITAFRQRPIREIFAQEGE 61
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
+++ E +VL Q+SS LVV G G V + N + W
Sbjct: 62 PAFRELEQQVLAQVSSYHHLVVATGGGIVLNPMNWSYLHHGIVVW 106
>sp|A9BCW6|AROK_PROM4 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9211)
GN=aroK PE=3 SV=1
Length = 197
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ +L G +++LVGM + K+ G LA L Y + D D V E +S ++ F + E
Sbjct: 10 VCKKLGGRNLYLVGMMGSGKSRTGPVLAKKLSYGFVDVDD-VIEKVTNQSISEIFDQEGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR 197
G+++ ET++L+++ LVV G G V N + W I +DR
Sbjct: 69 IGFREIETQILQEIGQRHSLVVATGGGIVTRPENWGILHQGVVIW-IDLDR 118
>sp|Q4FQI2|AROK_PSYA2 Shikimate kinase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=aroK PE=3 SV=1
Length = 186
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
SVFLVG A KT +G+ LA L + DSD V E+ G A F + E G+++ ET
Sbjct: 7 SVFLVGPMGAGKTTIGRLLAKQLGRTFVDSDWYV-ESQTGADIAWIFDKEGEAGFRERET 65
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
+ +L+ ++V+ G GAV ++ N
Sbjct: 66 RAIDELTQQPQIVLATGGGAVMAAEN 91
>sp|P63600|AROK_NEIMB Putative shikimate kinase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=aroK PE=3 SV=1
Length = 170
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN--LYEISGT 187
+LK+L + +V+ G GAV N L SGT
Sbjct: 67 ILKKLVILPHIVLSTGGGAVLKEENRALIRKSGT 100
>sp|P63599|AROK_NEIMA Putative shikimate kinase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=aroK PE=3 SV=1
Length = 170
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN--LYEISGT 187
+LK+L + +V+ G GAV N L SGT
Sbjct: 67 ILKKLVILPHIVLSTGGGAVLKEENRALIRKSGT 100
>sp|A9M1U5|AROK_NEIM0 Shikimate kinase OS=Neisseria meningitidis serogroup C (strain
053442) GN=aroK PE=3 SV=1
Length = 170
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN--LYEISGT 187
+LK+L + +V+ G GAV N L SGT
Sbjct: 67 ILKKLVILPHIVLSTGGGAVLKEENRALIRKSGT 100
>sp|Q5FAD3|AROK_NEIG1 Shikimate kinase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=aroK PE=3 SV=1
Length = 170
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN--LYEISGT 187
+LK+L + +V+ G GAV N L SGT
Sbjct: 67 ILKKLIVLPHIVLSTGGGAVLKEENRALIRKSGT 100
>sp|Q8J294|ARO1_THACU Pentafunctional AROM polypeptide OS=Thanatephorus cucumeris PE=3
SV=1
Length = 1618
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ +VGM A KTH+G A +L + + D+D VFE GE ++ R ++QAE+
Sbjct: 896 TIIIVGMRGAGKTHIGGIAAASLGWKFIDADH-VFEGRTGELVSQYVRSKGWTAFRQAES 954
Query: 155 EVLKQLSSMG--RLVVCAGNGAVQSSANLYEISG 186
++++ L + R ++ G G V+S N +SG
Sbjct: 955 QIIQDLLAENPTRTIISTGGGIVESPLNRALLSG 988
>sp|Q1Q8Q8|AROK_PSYCK Shikimate kinase OS=Psychrobacter cryohalolentis (strain K5)
GN=aroK PE=3 SV=1
Length = 186
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
SVFLVG A KT +G+ LA L + DSD + E+ G A F + E G+++ ET
Sbjct: 7 SVFLVGPMGAGKTTIGRLLAKQLGRSFVDSDWYI-ESQTGADIAWIFAKEGEAGFRERET 65
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
+ +L+ ++V+ G GAV ++ N
Sbjct: 66 RAIDELTQQPQIVLATGGGAVMAAEN 91
>sp|Q1QZY3|AROK_CHRSD Shikimate kinase OS=Chromohalobacter salexigens (strain DSM 3043 /
ATCC BAA-138 / NCIMB 13768) GN=aroK PE=3 SV=1
Length = 180
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ LVG A K+ +G+ LA L+ +FDSD + EA G + A F E G++ ET
Sbjct: 6 TIILVGPMGAGKSTIGRLLAAELQREFFDSDHEI-EARCGANIAWIFDVEGEAGFRDRET 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
+L++L+S+ +V+ G GAV N
Sbjct: 65 AMLRELASLDAVVLATGGGAVMREDN 90
>sp|Q31DP8|AROK_THICR Shikimate kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroK
PE=3 SV=1
Length = 174
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
S+FLVG A K+ +G+FLAD L Y + DSD V E G + F E G++ E
Sbjct: 5 SIFLVGPMGAGKSTVGRFLADKLHYQFLDSDQ-VIEDKTGATIPMIFDIEGESGFRAREK 63
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
+ L+ +V+ G GA+ + N
Sbjct: 64 AAIDDLTQQSEIVLATGGGAILNPEN 89
>sp|B3EIT1|AROK_CHLL2 Shikimate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC
103803) GN=aroK PE=3 SV=1
Length = 199
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+FL G + + K+ +G LA++L Y + D D + E+ G+S K F E E+ ++ E E
Sbjct: 7 IFLTGFSGSGKSTIGPLLANSLGYGFIDLDQEI-ESKAGKSITKIFAEEGEQTFRNLELE 65
Query: 156 VLKQLSSMGRLVVCAGNGAVQSS 178
L+QL+ LVV G G ++++
Sbjct: 66 TLRQLTGKKELVVSLGGGVLENN 88
>sp|A8MFK5|AROK_ALKOO Shikimate kinase OS=Alkaliphilus oremlandii (strain OhILAs) GN=aroK
PE=3 SV=1
Length = 169
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ LVG KT LGK LAD L Y + D D L E S ++ FR E ++Q E+
Sbjct: 4 NIVLVGFMAVGKTTLGKLLADQLDYNFIDLD-LFIEKKESMSISEIFRLKGEAYFRQKES 62
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
E L LS + + V+ G G V S N
Sbjct: 63 EALDLLSDVEQSVIATGGGTVISEEN 88
>sp|A6VKZ6|AROK_ACTSZ Shikimate kinase OS=Actinobacillus succinogenes (strain ATCC 55618
/ 130Z) GN=aroK PE=3 SV=1
Length = 175
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FLVG A K+ +G+ LA L +FDSDS++ E AG E + F E G+++ E
Sbjct: 6 NIFLVGPMGAGKSTIGRQLAQQLGMEFFDSDSVIEERAGAE-ISWIFDIEGENGFRKREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS 185
++ +L+ +V+ G G V S N +S
Sbjct: 65 RIINELTQKQGIVLSTGGGVVLSKENRNHLS 95
>sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=aroK PE=3 SV=1
Length = 179
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FL+G A KT +G+ LA AL ++DSD + E G + F E G+++ E+
Sbjct: 6 NIFLIGPMGAGKTTVGRLLARALGMEFWDSDKEI-ERRTGVTVPMIFEYEGEAGFRRRES 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
EV+ L+ R+V+ G G+V ++ N
Sbjct: 65 EVIADLTGKERIVLATGGGSVLAAEN 90
>sp|Q8XV61|AROK_RALSO Shikimate kinase OS=Ralstonia solanacearum (strain GMI1000) GN=aroK
PE=3 SV=1
Length = 190
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
++VF VG+ A KT +G+ +A L +FDSD + EA G F E G++ E
Sbjct: 4 SNVFFVGLMGAGKTTVGRAVARRLDLPFFDSDHEI-EARCGVRVPVIFEHEGEMGFRDRE 62
Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSAN 180
T+++ +L++ +VV G GAV N
Sbjct: 63 TQMIDELTARHGVVVATGGGAVLRPEN 89
>sp|A7MSY3|AROK_VIBHB Shikimate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=aroK PE=3 SV=1
Length = 172
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FLVG A K+ +G+ LA L + DSD+++ E G + A F E+G+++ E
Sbjct: 6 NIFLVGPMGAGKSTIGRHLAQQLHMEFVDSDTVIEERTGAD-IAWVFDVEGEEGFRKREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS 185
VL+ L+ +V+ G G+V+S N +S
Sbjct: 65 AVLEDLTQEQGIVLATGGGSVKSKENRNRLS 95
>sp|Q3JEG4|AROK_NITOC Shikimate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=aroK PE=3 SV=1
Length = 190
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FLVG + KT +G++LA ++DSD + E+ G S F E G++Q E
Sbjct: 5 NIFLVGPMGSGKTTIGRYLARITGKNFYDSDREI-ESRTGVSIPVIFEIEGESGFRQREC 63
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS 185
+++ +L + +V+ G GAV ++ N E+S
Sbjct: 64 KIIAELVQLNNIVLATGGGAVLAAENRRELS 94
>sp|A1BER1|AROK_CHLPD Shikimate kinase OS=Chlorobium phaeobacteroides (strain DSM 266)
GN=aroK PE=3 SV=1
Length = 190
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+FL G + + K+ +G LA++L Y + D D + EA G+S ++ F E E +++ E +
Sbjct: 7 IFLTGFSGSGKSTIGPLLANSLGYDFIDLDQAI-EAITGKSVSRIFAEEGESYFRKLELD 65
Query: 156 VLKQLSSMGRLVVCAGNGAVQSS 178
LK +++ L+V G GA++S+
Sbjct: 66 TLKTVTNREELIVSLGGGALESN 88
>sp|C4LB08|AROK_TOLAT Shikimate kinase OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=aroK PE=3 SV=1
Length = 172
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FL+G A K+ +GK+L++ L +DSD + E G A F E+G+++ E
Sbjct: 6 NIFLIGPMGAGKSTIGKYLSETLHMDLYDSDQEI-ERRTGADIAWVFDVEGEEGFRKREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQS 177
+V+ LS + +V+ G GA++S
Sbjct: 65 QVISDLSELQGIVLATGGGAIKS 87
>sp|Q5WXX6|AROK_LEGPL Shikimate kinase OS=Legionella pneumophila (strain Lens) GN=aroK
PE=3 SV=1
Length = 175
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
+K ++FL+G A K+ +G+ LA L+ ++DSD ++ E AG + + F E+G++
Sbjct: 4 VKVRNIFLIGPMGAGKSTIGRALAKELKLEFYDSDEVIEERAGAD-ISWIFDIEGEEGFR 62
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISG 186
+ E +V+ +L+ +V+ G G V + N ++G
Sbjct: 63 RREQKVIDELTQKTNIVLATGGGVVITPENRNALAG 98
>sp|Q5ZX01|AROK_LEGPH Shikimate kinase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=aroK
PE=3 SV=1
Length = 175
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
+K ++FL+G A K+ +G+ LA L+ ++DSD ++ E AG + + F E+G++
Sbjct: 4 VKVRNIFLIGPMGAGKSTIGRALAKELKLEFYDSDEVIEERAGAD-ISWIFDIEGEEGFR 62
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISG 186
+ E +V+ +L+ +V+ G G V + N ++G
Sbjct: 63 RREQKVIDELTQKTNIVLATGGGVVITPENRNALAG 98
>sp|A5IFY0|AROK_LEGPC Shikimate kinase OS=Legionella pneumophila (strain Corby) GN=aroK
PE=3 SV=1
Length = 175
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
+K ++FL+G A K+ +G+ LA L+ ++DSD ++ E AG + + F E+G++
Sbjct: 4 VKVRNIFLIGPMGAGKSTIGRALAKELKLEFYDSDEVIEERAGAD-ISWIFDIEGEEGFR 62
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISG 186
+ E +V+ +L+ +V+ G G V + N ++G
Sbjct: 63 RREQKVIDELTQKTNIVLATGGGVVITPENRNALAG 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,428,241
Number of Sequences: 539616
Number of extensions: 2461098
Number of successful extensions: 6850
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 6510
Number of HSP's gapped (non-prelim): 435
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)