Query 028227
Match_columns 212
No_of_seqs 192 out of 1532
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0703 AroK Shikimate kinase 100.0 3.5E-29 7.5E-34 209.2 12.7 111 93-204 2-113 (172)
2 PLN02199 shikimate kinase 100.0 1.8E-27 3.9E-32 213.6 15.0 123 73-197 83-206 (303)
3 PRK13948 shikimate kinase; Pro 99.9 1E-24 2.2E-29 183.1 13.8 110 91-201 8-118 (182)
4 PRK13949 shikimate kinase; Pro 99.9 1.7E-23 3.6E-28 172.8 12.6 107 94-201 2-109 (169)
5 PF01202 SKI: Shikimate kinase 99.9 7.5E-24 1.6E-28 172.0 8.5 99 102-201 1-100 (158)
6 PRK00625 shikimate kinase; Pro 99.9 4.8E-23 1E-27 171.5 12.8 102 94-197 1-107 (173)
7 PRK14021 bifunctional shikimat 99.9 3.4E-23 7.3E-28 198.5 12.9 106 92-198 5-115 (542)
8 PRK13946 shikimate kinase; Pro 99.9 5E-22 1.1E-26 164.9 13.2 115 89-204 6-122 (184)
9 PRK13947 shikimate kinase; Pro 99.9 6.5E-22 1.4E-26 160.1 12.7 107 95-202 3-111 (171)
10 PRK05057 aroK shikimate kinase 99.9 1.1E-21 2.3E-26 162.1 12.9 105 92-197 3-108 (172)
11 PRK03731 aroL shikimate kinase 99.9 5.1E-21 1.1E-25 155.4 12.4 102 94-197 3-105 (171)
12 PRK00131 aroK shikimate kinase 99.8 4.4E-20 9.5E-25 148.0 14.1 112 91-203 2-115 (175)
13 PRK13951 bifunctional shikimat 99.8 4E-20 8.8E-25 175.6 13.0 113 95-208 2-115 (488)
14 cd00464 SK Shikimate kinase (S 99.8 1.2E-19 2.6E-24 143.5 12.7 110 95-205 1-112 (154)
15 PRK08154 anaerobic benzoate ca 99.8 2.5E-18 5.5E-23 154.2 13.6 111 92-203 132-245 (309)
16 PRK09169 hypothetical protein; 99.5 2.9E-14 6.3E-19 151.4 10.9 105 90-198 2107-2212(2316)
17 PRK03839 putative kinase; Prov 99.5 7.6E-14 1.6E-18 114.5 8.4 94 95-201 2-95 (180)
18 PRK14530 adenylate kinase; Pro 99.4 2.8E-12 6.1E-17 108.6 11.7 105 92-200 2-120 (215)
19 PRK06217 hypothetical protein; 99.4 1.3E-12 2.9E-17 108.0 7.8 92 94-196 2-94 (183)
20 PRK14532 adenylate kinase; Pro 99.4 1.8E-12 3.8E-17 106.9 8.3 100 95-199 2-120 (188)
21 KOG3354 Gluconate kinase [Carb 99.4 1.6E-12 3.4E-17 108.4 7.3 105 94-204 13-136 (191)
22 KOG2004 Mitochondrial ATP-depe 99.3 6.9E-13 1.5E-17 130.3 3.3 82 43-124 367-469 (906)
23 PRK08118 topology modulation p 99.3 9.7E-12 2.1E-16 102.5 9.0 94 94-203 2-101 (167)
24 COG3265 GntK Gluconate kinase 99.3 5.3E-12 1.2E-16 104.0 7.0 96 99-200 1-105 (161)
25 TIGR01313 therm_gnt_kin carboh 99.3 1.9E-11 4.2E-16 98.4 9.5 95 96-197 1-105 (163)
26 PRK05541 adenylylsulfate kinas 99.3 3.4E-11 7.3E-16 98.5 10.2 104 92-200 6-116 (176)
27 PRK04182 cytidylate kinase; Pr 99.3 5E-11 1.1E-15 96.2 10.3 102 95-205 2-112 (180)
28 PRK10078 ribose 1,5-bisphospho 99.2 8E-12 1.7E-16 103.6 3.8 106 93-200 2-125 (186)
29 TIGR03575 selen_PSTK_euk L-ser 99.2 8.4E-12 1.8E-16 114.4 4.1 90 96-197 2-113 (340)
30 COG1102 Cmk Cytidylate kinase 99.2 1.1E-10 2.3E-15 97.7 10.0 104 95-207 2-113 (179)
31 cd01428 ADK Adenylate kinase ( 99.2 1.6E-10 3.4E-15 94.7 9.9 38 95-132 1-38 (194)
32 PLN02674 adenylate kinase 99.2 2E-10 4.3E-15 101.0 11.0 109 93-206 31-158 (244)
33 cd02021 GntK Gluconate kinase 99.2 9.9E-11 2.1E-15 92.9 8.1 102 96-203 2-115 (150)
34 PF13207 AAA_17: AAA domain; P 99.1 5.8E-11 1.2E-15 90.5 5.2 34 95-128 1-34 (121)
35 COG0466 Lon ATP-dependent Lon 99.1 2.4E-11 5.2E-16 119.5 3.3 79 46-124 282-381 (782)
36 PRK00279 adk adenylate kinase; 99.1 4.5E-10 9.7E-15 95.1 10.1 38 95-132 2-39 (215)
37 TIGR01351 adk adenylate kinase 99.1 5.3E-10 1.1E-14 94.4 10.1 38 95-132 1-38 (210)
38 PTZ00088 adenylate kinase 1; P 99.1 6.3E-10 1.4E-14 96.7 10.3 104 93-200 6-124 (229)
39 PRK05537 bifunctional sulfate 99.1 8.9E-11 1.9E-15 113.9 5.4 94 92-197 391-503 (568)
40 PRK07261 topology modulation p 99.1 1.9E-10 4.2E-15 94.9 6.6 95 94-203 1-101 (171)
41 TIGR01360 aden_kin_iso1 adenyl 99.1 6.6E-10 1.4E-14 90.4 9.5 39 93-131 3-41 (188)
42 PF13671 AAA_33: AAA domain; P 99.1 7.4E-10 1.6E-14 86.4 9.1 39 95-133 1-39 (143)
43 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 1E-09 2.2E-14 89.6 10.0 106 96-205 2-124 (183)
44 TIGR02173 cyt_kin_arch cytidyl 99.1 1.8E-09 3.9E-14 86.6 11.2 105 95-206 2-113 (171)
45 cd02020 CMPK Cytidine monophos 99.1 7.8E-10 1.7E-14 86.3 8.9 99 96-204 2-102 (147)
46 PRK14531 adenylate kinase; Pro 99.1 1.3E-09 2.9E-14 90.2 10.3 38 94-131 3-40 (183)
47 PHA02530 pseT polynucleotide k 99.0 1.3E-09 2.8E-14 95.8 10.1 107 94-200 3-117 (300)
48 PRK06547 hypothetical protein; 99.0 2.2E-10 4.9E-15 95.3 4.0 112 92-205 14-138 (172)
49 PRK01184 hypothetical protein; 99.0 3.1E-09 6.7E-14 87.3 10.4 38 94-132 2-39 (184)
50 PRK06762 hypothetical protein; 99.0 3.5E-09 7.7E-14 85.4 9.2 41 93-133 2-44 (166)
51 PRK02496 adk adenylate kinase; 98.9 6.1E-09 1.3E-13 85.7 10.1 39 94-132 2-40 (184)
52 PRK13975 thymidylate kinase; P 98.9 8.2E-10 1.8E-14 91.1 4.7 100 93-198 2-126 (196)
53 PRK14527 adenylate kinase; Pro 98.9 7.2E-09 1.6E-13 86.1 10.3 41 92-132 5-45 (191)
54 PRK13808 adenylate kinase; Pro 98.9 5.3E-09 1.1E-13 95.8 10.2 37 95-131 2-38 (333)
55 PTZ00322 6-phosphofructo-2-kin 98.9 1.6E-10 3.5E-15 113.5 0.2 102 92-194 214-332 (664)
56 PRK00889 adenylylsulfate kinas 98.9 9.1E-09 2E-13 84.0 10.5 101 92-198 3-112 (175)
57 PRK03846 adenylylsulfate kinas 98.9 8.9E-09 1.9E-13 86.3 10.1 102 92-197 23-133 (198)
58 PRK14528 adenylate kinase; Pro 98.9 1.2E-08 2.7E-13 85.1 10.7 39 94-132 2-40 (186)
59 PLN02200 adenylate kinase fami 98.9 1.7E-08 3.7E-13 87.7 11.2 40 93-132 43-82 (234)
60 TIGR03574 selen_PSTK L-seryl-t 98.9 9.8E-09 2.1E-13 88.8 9.4 99 96-202 2-113 (249)
61 PF01583 APS_kinase: Adenylyls 98.9 9.3E-09 2E-13 85.0 8.6 105 92-202 1-117 (156)
62 PRK14526 adenylate kinase; Pro 98.9 2E-08 4.2E-13 86.2 10.2 37 95-131 2-38 (211)
63 PRK09825 idnK D-gluconate kina 98.9 3.2E-08 6.9E-13 82.3 11.2 103 91-202 1-115 (176)
64 PRK11545 gntK gluconate kinase 98.8 9.7E-09 2.1E-13 84.1 7.5 97 99-203 1-108 (163)
65 PLN02459 probable adenylate ki 98.8 3.2E-08 7E-13 88.0 10.7 39 94-132 30-68 (261)
66 PLN02165 adenylate isopentenyl 98.8 2E-08 4.3E-13 92.1 8.7 83 91-174 41-143 (334)
67 cd00227 CPT Chloramphenicol (C 98.8 3.4E-08 7.3E-13 81.0 9.2 40 92-131 1-42 (175)
68 TIGR00017 cmk cytidylate kinas 98.8 7.4E-08 1.6E-12 82.9 11.7 38 94-131 3-40 (217)
69 TIGR02322 phosphon_PhnN phosph 98.8 1.6E-08 3.5E-13 82.5 6.9 27 93-119 1-27 (179)
70 PRK00081 coaE dephospho-CoA ki 98.8 2.1E-08 4.6E-13 84.2 7.5 38 94-132 3-40 (194)
71 PF00406 ADK: Adenylate kinase 98.8 2.6E-08 5.7E-13 79.6 7.7 35 98-132 1-35 (151)
72 PRK10787 DNA-binding ATP-depen 98.8 5.4E-09 1.2E-13 104.9 4.2 77 47-123 282-379 (784)
73 PRK04040 adenylate kinase; Pro 98.7 1.6E-07 3.4E-12 79.1 12.0 40 93-132 2-43 (188)
74 cd02022 DPCK Dephospho-coenzym 98.7 3.7E-08 8.1E-13 81.4 8.0 37 96-133 2-38 (179)
75 PRK14529 adenylate kinase; Pro 98.7 5.5E-08 1.2E-12 84.5 9.3 102 95-200 2-120 (223)
76 PRK14733 coaE dephospho-CoA ki 98.7 5.3E-08 1.2E-12 83.5 9.0 57 93-149 6-63 (204)
77 TIGR00152 dephospho-CoA kinase 98.7 7.3E-08 1.6E-12 79.9 8.5 39 95-133 1-39 (188)
78 PRK03333 coaE dephospho-CoA ki 98.7 2.2E-08 4.8E-13 93.2 5.2 52 95-147 3-56 (395)
79 PRK00023 cmk cytidylate kinase 98.7 2.4E-07 5.3E-12 79.9 10.9 40 91-130 2-41 (225)
80 PRK08233 hypothetical protein; 98.6 7.5E-08 1.6E-12 77.9 6.7 36 92-127 2-38 (182)
81 cd02027 APSK Adenosine 5'-phos 98.6 2.2E-07 4.7E-12 75.0 9.1 99 96-201 2-112 (149)
82 COG0529 CysC Adenylylsulfate k 98.6 2.1E-07 4.5E-12 79.1 8.8 106 92-202 22-138 (197)
83 KOG3347 Predicted nucleotide k 98.6 6E-08 1.3E-12 80.7 5.1 39 92-130 6-44 (176)
84 PLN02422 dephospho-CoA kinase 98.6 2.8E-07 6E-12 80.6 9.6 53 95-148 3-57 (232)
85 COG0563 Adk Adenylate kinase a 98.6 6E-08 1.3E-12 81.4 5.0 39 94-132 1-39 (178)
86 TIGR00455 apsK adenylylsulfate 98.6 5.1E-07 1.1E-11 74.3 10.4 101 92-198 17-128 (184)
87 PRK14734 coaE dephospho-CoA ki 98.6 5.5E-07 1.2E-11 76.3 10.5 51 95-146 3-55 (200)
88 TIGR00763 lon ATP-dependent pr 98.6 4.7E-08 1E-12 97.8 4.4 78 47-124 280-378 (775)
89 PRK08356 hypothetical protein; 98.5 7.6E-07 1.7E-11 74.4 9.3 34 94-128 6-39 (195)
90 PRK14730 coaE dephospho-CoA ki 98.5 2.4E-07 5.3E-12 78.2 6.2 39 94-132 2-40 (195)
91 TIGR00390 hslU ATP-dependent p 98.4 2.6E-07 5.7E-12 87.3 5.9 60 90-150 44-106 (441)
92 PRK14732 coaE dephospho-CoA ki 98.4 1.4E-06 3.1E-11 73.8 9.6 36 96-132 2-37 (196)
93 PRK14731 coaE dephospho-CoA ki 98.4 3.3E-06 7.1E-11 71.8 11.3 38 94-132 6-43 (208)
94 PLN02842 nucleotide kinase 98.4 8.2E-07 1.8E-11 85.4 8.4 35 97-131 1-35 (505)
95 COG1936 Predicted nucleotide k 98.4 1.3E-06 2.8E-11 73.8 8.2 37 94-131 1-37 (180)
96 cd02023 UMPK Uridine monophosp 98.4 1.1E-06 2.3E-11 73.2 7.5 35 96-130 2-39 (198)
97 PTZ00451 dephospho-CoA kinase; 98.4 3.1E-06 6.7E-11 74.5 10.2 39 95-133 3-41 (244)
98 PRK12339 2-phosphoglycerate ki 98.4 3.8E-06 8.2E-11 71.5 10.4 40 92-131 2-42 (197)
99 PRK13477 bifunctional pantoate 98.4 9.2E-07 2E-11 85.3 7.4 40 92-131 283-322 (512)
100 PF13238 AAA_18: AAA domain; P 98.3 4.9E-07 1.1E-11 68.4 4.1 22 96-117 1-22 (129)
101 PRK05506 bifunctional sulfate 98.3 2.1E-06 4.5E-11 84.1 9.4 104 92-201 459-573 (632)
102 COG2256 MGS1 ATPase related to 98.3 1.6E-06 3.4E-11 81.4 7.5 116 71-194 30-162 (436)
103 PRK05480 uridine/cytidine kina 98.3 2.5E-06 5.4E-11 71.6 8.1 38 92-129 5-45 (209)
104 COG4088 Predicted nucleotide k 98.3 3.1E-06 6.6E-11 74.0 8.7 113 95-211 3-126 (261)
105 PRK11860 bifunctional 3-phosph 98.3 2.3E-06 5E-11 84.4 8.8 39 93-131 442-480 (661)
106 COG0237 CoaE Dephospho-CoA kin 98.3 1.1E-06 2.4E-11 75.2 5.5 38 94-132 3-40 (201)
107 cd01672 TMPK Thymidine monopho 98.3 4.3E-06 9.2E-11 67.9 8.5 30 95-124 2-34 (200)
108 PF00004 AAA: ATPase family as 98.3 9.3E-07 2E-11 67.2 4.0 30 96-125 1-30 (132)
109 TIGR01663 PNK-3'Pase polynucle 98.3 2.8E-06 6.1E-11 82.2 8.0 86 92-199 368-461 (526)
110 PRK09270 nucleoside triphospha 98.2 8.5E-06 1.8E-10 69.8 9.9 113 80-196 19-171 (229)
111 COG0645 Predicted kinase [Gene 98.2 7.2E-06 1.6E-10 68.9 8.9 40 94-133 2-41 (170)
112 KOG3079 Uridylate kinase/adeny 98.2 1.2E-05 2.6E-10 68.7 9.8 102 92-197 7-124 (195)
113 PRK05201 hslU ATP-dependent pr 98.2 3.3E-06 7.1E-11 80.1 6.9 70 91-161 48-136 (443)
114 PF13189 Cytidylate_kin2: Cyti 98.2 1.5E-05 3.3E-10 66.2 9.8 100 96-204 2-133 (179)
115 cd02024 NRK1 Nicotinamide ribo 98.2 5.5E-06 1.2E-10 70.1 7.3 35 96-130 2-37 (187)
116 TIGR00041 DTMP_kinase thymidyl 98.2 1.6E-05 3.6E-10 65.4 9.7 27 92-118 2-28 (195)
117 PF01121 CoaE: Dephospho-CoA k 98.1 2.7E-06 5.8E-11 71.5 4.7 38 95-133 2-39 (180)
118 COG0283 Cmk Cytidylate kinase 98.1 6.1E-06 1.3E-10 71.9 5.4 38 94-131 5-42 (222)
119 PRK00091 miaA tRNA delta(2)-is 98.1 1.9E-05 4.1E-10 71.7 8.8 81 93-173 4-102 (307)
120 COG4639 Predicted kinase [Gene 98.1 2.9E-05 6.4E-10 64.8 9.1 100 94-199 3-110 (168)
121 COG0572 Udk Uridine kinase [Nu 98.0 2.5E-05 5.4E-10 68.0 8.8 37 94-130 9-48 (218)
122 PF08433 KTI12: Chromatin asso 98.0 2E-05 4.4E-10 70.2 8.1 107 95-208 3-122 (270)
123 KOG0730 AAA+-type ATPase [Post 98.0 1.9E-05 4.2E-10 77.8 8.0 75 67-144 432-523 (693)
124 PHA00729 NTP-binding motif con 98.0 1.6E-05 3.5E-10 69.5 6.6 39 79-118 4-42 (226)
125 KOG0733 Nuclear AAA ATPase (VC 98.0 2.3E-05 5.1E-10 77.1 8.3 72 90-161 220-314 (802)
126 PRK12338 hypothetical protein; 98.0 6.1E-05 1.3E-09 68.9 10.5 42 92-133 3-45 (319)
127 PTZ00301 uridine kinase; Provi 98.0 4E-05 8.7E-10 65.9 8.5 38 92-129 2-46 (210)
128 PF06414 Zeta_toxin: Zeta toxi 97.9 3.8E-05 8.2E-10 64.4 8.0 39 91-129 13-54 (199)
129 COG2019 AdkA Archaeal adenylat 97.9 0.0002 4.3E-09 60.8 12.0 103 94-196 5-120 (189)
130 PRK00300 gmk guanylate kinase; 97.9 2.8E-05 6.1E-10 64.6 6.6 27 92-118 4-30 (205)
131 PLN02840 tRNA dimethylallyltra 97.9 3.3E-05 7.1E-10 73.1 7.7 81 92-172 20-118 (421)
132 PRK06696 uridine kinase; Valid 97.9 1.6E-05 3.4E-10 67.9 4.8 38 92-129 21-63 (223)
133 PRK13973 thymidylate kinase; P 97.9 0.00012 2.6E-09 62.2 10.2 34 91-124 1-37 (213)
134 PF05496 RuvB_N: Holliday junc 97.9 1.2E-05 2.6E-10 70.6 3.9 30 94-123 51-80 (233)
135 TIGR00174 miaA tRNA isopenteny 97.9 4.6E-05 1E-09 68.7 7.8 77 96-172 2-96 (287)
136 PF07728 AAA_5: AAA domain (dy 97.9 1.7E-05 3.6E-10 62.0 4.3 28 95-122 1-28 (139)
137 PRK09518 bifunctional cytidyla 97.9 1.1E-05 2.4E-10 80.1 4.0 37 95-131 3-39 (712)
138 PLN02748 tRNA dimethylallyltra 97.9 4.7E-05 1E-09 72.9 8.0 82 92-173 21-120 (468)
139 KOG3877 NADH:ubiquinone oxidor 97.9 2.2E-05 4.7E-10 71.4 5.4 41 93-133 71-114 (393)
140 PRK00698 tmk thymidylate kinas 97.9 0.00026 5.7E-09 58.3 11.5 26 92-117 2-27 (205)
141 smart00382 AAA ATPases associa 97.9 1.8E-05 3.9E-10 58.4 4.1 28 93-120 2-29 (148)
142 cd01673 dNK Deoxyribonucleosid 97.9 8.3E-05 1.8E-09 61.3 8.3 29 96-124 2-30 (193)
143 cd00009 AAA The AAA+ (ATPases 97.8 4.9E-05 1.1E-09 56.9 6.3 33 92-124 18-53 (151)
144 PRK12269 bifunctional cytidyla 97.8 2.9E-05 6.2E-10 79.1 5.8 42 91-132 32-73 (863)
145 TIGR00150 HI0065_YjeE ATPase, 97.8 5.1E-05 1.1E-09 61.3 6.0 43 78-120 6-49 (133)
146 PRK05439 pantothenate kinase; 97.8 7E-05 1.5E-09 68.2 7.3 37 93-129 86-129 (311)
147 cd02019 NK Nucleoside/nucleoti 97.8 2.9E-05 6.2E-10 55.0 3.8 22 96-117 2-23 (69)
148 PF07931 CPT: Chloramphenicol 97.8 0.0002 4.3E-09 60.2 9.4 38 93-130 1-40 (174)
149 TIGR02640 gas_vesic_GvpN gas v 97.8 4.2E-05 9.1E-10 67.1 5.5 42 79-122 9-50 (262)
150 TIGR02881 spore_V_K stage V sp 97.7 6.4E-05 1.4E-09 65.6 5.9 25 93-117 42-66 (261)
151 PLN00020 ribulose bisphosphate 97.7 0.0001 2.2E-09 69.3 7.3 41 93-133 148-190 (413)
152 CHL00195 ycf46 Ycf46; Provisio 97.7 6.3E-05 1.4E-09 72.3 6.0 34 92-125 258-291 (489)
153 PRK08084 DNA replication initi 97.7 0.00062 1.3E-08 58.8 11.3 36 92-127 44-84 (235)
154 PRK09087 hypothetical protein; 97.7 9.2E-05 2E-09 64.0 6.1 103 93-196 44-154 (226)
155 PRK06620 hypothetical protein; 97.7 0.00017 3.8E-09 61.8 7.7 100 94-196 45-148 (214)
156 TIGR01241 FtsH_fam ATP-depende 97.7 0.00015 3.3E-09 69.0 8.0 33 93-125 88-120 (495)
157 TIGR02880 cbbX_cfxQ probable R 97.7 8.6E-05 1.9E-09 66.2 6.0 41 93-133 58-107 (284)
158 PRK04220 2-phosphoglycerate ki 97.6 0.00013 2.8E-09 66.3 7.0 45 87-131 86-131 (301)
159 PRK12337 2-phosphoglycerate ki 97.6 0.0004 8.6E-09 66.6 10.5 42 92-133 254-296 (475)
160 cd00071 GMPK Guanosine monopho 97.6 0.00013 2.8E-09 58.2 6.0 23 96-118 2-24 (137)
161 COG0194 Gmk Guanylate kinase [ 97.6 0.00019 4E-09 61.4 7.2 28 92-119 3-30 (191)
162 PRK05342 clpX ATP-dependent pr 97.6 5.7E-05 1.2E-09 71.1 4.5 35 92-126 107-141 (412)
163 PRK14737 gmk guanylate kinase; 97.6 0.00019 4.1E-09 60.3 7.2 26 92-117 3-28 (186)
164 PLN02348 phosphoribulokinase 97.6 0.00014 3.1E-09 68.3 7.1 36 93-128 49-104 (395)
165 PHA02244 ATPase-like protein 97.6 0.00011 2.4E-09 68.7 6.1 46 80-127 108-153 (383)
166 PF03215 Rad17: Rad17 cell cyc 97.6 0.00011 2.4E-09 71.1 6.3 45 79-123 30-75 (519)
167 TIGR01650 PD_CobS cobaltochela 97.6 6.3E-05 1.4E-09 69.0 4.1 33 90-122 61-93 (327)
168 TIGR00235 udk uridine kinase. 97.6 5.8E-05 1.3E-09 63.5 3.6 38 92-129 5-45 (207)
169 TIGR03420 DnaA_homol_Hda DnaA 97.6 0.0002 4.3E-09 60.0 6.8 38 92-129 37-79 (226)
170 PRK08903 DnaA regulatory inact 97.6 0.00084 1.8E-08 56.9 10.6 39 92-130 41-84 (227)
171 KOG3220 Similar to bacterial d 97.6 0.00062 1.3E-08 59.2 9.6 37 95-132 3-39 (225)
172 PRK14738 gmk guanylate kinase; 97.6 0.00023 5.1E-09 60.2 6.9 28 89-116 9-36 (206)
173 PRK04195 replication factor C 97.6 0.00015 3.2E-09 68.9 6.3 47 79-125 25-71 (482)
174 KOG0635 Adenosine 5'-phosphosu 97.6 0.00039 8.4E-09 58.5 8.0 100 92-198 30-141 (207)
175 cd02030 NDUO42 NADH:Ubiquinone 97.5 0.00096 2.1E-08 56.9 10.4 28 96-123 2-29 (219)
176 TIGR00554 panK_bact pantothena 97.5 0.00073 1.6E-08 61.0 10.1 36 93-128 62-104 (290)
177 PRK05416 glmZ(sRNA)-inactivati 97.5 0.00041 8.8E-09 62.5 8.4 31 93-124 6-36 (288)
178 PRK06893 DNA replication initi 97.5 0.0015 3.2E-08 56.2 11.4 34 93-126 39-77 (229)
179 PRK03992 proteasome-activating 97.5 9.4E-05 2E-09 68.7 4.3 33 92-124 164-196 (389)
180 smart00072 GuKc Guanylate kina 97.5 0.00034 7.4E-09 57.9 7.2 25 93-117 2-26 (184)
181 cd02028 UMPK_like Uridine mono 97.5 0.0001 2.2E-09 61.3 4.0 34 96-129 2-40 (179)
182 CHL00181 cbbX CbbX; Provisiona 97.5 0.00013 2.9E-09 65.3 4.9 41 93-133 59-108 (287)
183 PF13521 AAA_28: AAA domain; P 97.5 7.9E-05 1.7E-09 60.0 3.1 27 95-122 1-27 (163)
184 PF13173 AAA_14: AAA domain 97.5 0.00013 2.9E-09 56.8 4.3 38 93-130 2-43 (128)
185 PF00485 PRK: Phosphoribulokin 97.5 9.9E-05 2.1E-09 61.5 3.7 34 95-128 1-43 (194)
186 COG1222 RPT1 ATP-dependent 26S 97.5 0.00038 8.2E-09 65.0 7.6 42 92-133 184-227 (406)
187 TIGR00382 clpX endopeptidase C 97.5 0.00012 2.7E-09 69.0 4.5 33 93-125 116-148 (413)
188 PRK14729 miaA tRNA delta(2)-is 97.5 0.00053 1.1E-08 62.3 8.4 79 93-172 4-100 (300)
189 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00031 6.6E-09 69.5 7.2 42 92-133 544-587 (802)
190 PRK07667 uridine kinase; Provi 97.4 0.00021 4.6E-09 59.8 5.1 39 93-131 17-60 (193)
191 CHL00176 ftsH cell division pr 97.4 0.00053 1.1E-08 68.0 8.6 33 93-125 216-248 (638)
192 TIGR01242 26Sp45 26S proteasom 97.4 0.00015 3.3E-09 66.2 4.5 33 93-125 156-188 (364)
193 TIGR03263 guanyl_kin guanylate 97.4 0.00011 2.4E-09 59.7 3.1 27 93-119 1-27 (180)
194 COG1219 ClpX ATP-dependent pro 97.4 0.00017 3.7E-09 66.6 4.5 38 90-127 94-131 (408)
195 KOG0736 Peroxisome assembly fa 97.4 0.00057 1.2E-08 68.9 8.5 42 92-133 704-747 (953)
196 COG1220 HslU ATP-dependent pro 97.4 0.00056 1.2E-08 63.8 7.9 37 86-122 43-79 (444)
197 PRK13974 thymidylate kinase; P 97.4 0.0017 3.7E-08 55.1 10.3 27 92-118 2-28 (212)
198 PRK13342 recombination factor 97.4 0.00026 5.7E-09 66.0 5.8 47 76-126 23-69 (413)
199 TIGR01243 CDC48 AAA family ATP 97.4 0.00041 8.9E-09 69.2 7.4 42 92-133 486-529 (733)
200 PRK15453 phosphoribulokinase; 97.4 0.00014 3E-09 65.8 3.7 38 92-129 4-46 (290)
201 PTZ00454 26S protease regulato 97.4 0.00019 4.2E-09 67.2 4.6 33 92-124 178-210 (398)
202 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00025 5.4E-09 66.0 5.1 28 92-119 77-104 (361)
203 TIGR03689 pup_AAA proteasome A 97.4 0.00039 8.4E-09 67.3 6.5 29 92-120 215-243 (512)
204 PF02367 UPF0079: Uncharacteri 97.4 0.00026 5.6E-09 56.5 4.4 38 83-120 4-42 (123)
205 PF01591 6PF2K: 6-phosphofruct 97.3 0.00095 2.1E-08 58.2 8.2 58 93-150 12-74 (222)
206 KOG0739 AAA+-type ATPase [Post 97.3 0.0011 2.3E-08 61.3 8.5 84 50-133 109-208 (439)
207 KOG1384 tRNA delta(2)-isopente 97.3 0.0012 2.6E-08 60.9 8.7 80 92-173 6-105 (348)
208 PRK06761 hypothetical protein; 97.3 0.00024 5.2E-09 64.0 4.1 34 93-126 3-36 (282)
209 PF06068 TIP49: TIP49 C-termin 97.3 0.00039 8.5E-09 65.2 5.6 38 88-125 45-84 (398)
210 TIGR00635 ruvB Holliday juncti 97.3 0.00029 6.2E-09 62.1 4.5 30 93-122 30-59 (305)
211 PF07724 AAA_2: AAA domain (Cd 97.3 0.00029 6.3E-09 58.6 4.2 26 94-119 4-29 (171)
212 PRK10646 ADP-binding protein; 97.3 0.00056 1.2E-08 56.6 5.7 42 78-119 12-54 (153)
213 PF00308 Bac_DnaA: Bacterial d 97.3 0.0039 8.5E-08 53.5 11.2 119 78-196 17-167 (219)
214 PTZ00361 26 proteosome regulat 97.3 0.0003 6.5E-09 66.8 4.4 33 92-124 216-248 (438)
215 KOG0734 AAA+-type ATPase conta 97.2 0.00087 1.9E-08 65.6 7.3 53 79-131 311-376 (752)
216 PRK10733 hflB ATP-dependent me 97.2 0.0011 2.4E-08 65.6 8.2 33 93-125 185-217 (644)
217 COG1223 Predicted ATPase (AAA+ 97.2 0.00093 2E-08 60.7 6.9 45 89-133 147-193 (368)
218 COG0324 MiaA tRNA delta(2)-iso 97.2 0.0015 3.3E-08 59.6 8.3 36 93-128 3-38 (308)
219 PRK00080 ruvB Holliday junctio 97.2 0.00037 8.1E-09 62.7 4.3 30 93-122 51-80 (328)
220 KOG0731 AAA+-type ATPase conta 97.2 0.00044 9.6E-09 69.6 5.1 55 79-133 318-386 (774)
221 COG0714 MoxR-like ATPases [Gen 97.2 0.00038 8.3E-09 62.8 4.1 34 89-122 39-72 (329)
222 TIGR02639 ClpA ATP-dependent C 97.2 0.0019 4.1E-08 64.6 9.3 37 92-128 202-250 (731)
223 PF01695 IstB_IS21: IstB-like 97.2 0.00066 1.4E-08 56.7 5.1 42 92-133 46-92 (178)
224 KOG1970 Checkpoint RAD17-RFC c 97.2 0.00051 1.1E-08 67.1 5.0 38 87-124 104-141 (634)
225 cd02025 PanK Pantothenate kina 97.2 0.00034 7.3E-09 60.2 3.4 33 96-128 2-41 (220)
226 COG0464 SpoVK ATPases of the A 97.2 0.00041 8.9E-09 65.7 4.2 42 92-133 275-318 (494)
227 PRK09183 transposase/IS protei 97.1 0.00068 1.5E-08 59.7 5.2 38 92-129 101-143 (259)
228 KOG0744 AAA+-type ATPase [Post 97.1 0.00035 7.7E-09 64.8 3.2 28 94-121 178-205 (423)
229 PRK00149 dnaA chromosomal repl 97.1 0.0042 9.2E-08 58.5 10.4 39 93-131 148-193 (450)
230 COG1428 Deoxynucleoside kinase 97.1 0.00054 1.2E-08 59.6 3.9 30 93-122 4-33 (216)
231 PF03266 NTPase_1: NTPase; In 97.1 0.00058 1.3E-08 56.7 3.9 23 95-117 1-23 (168)
232 PF00910 RNA_helicase: RNA hel 97.1 0.00044 9.6E-09 52.7 2.9 23 96-118 1-23 (107)
233 PF07726 AAA_3: ATPase family 97.1 0.00037 8E-09 56.4 2.4 39 95-133 1-43 (131)
234 PRK12402 replication factor C 97.0 0.0014 3.1E-08 58.0 6.4 24 95-118 38-61 (337)
235 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00072 1.6E-08 52.8 3.8 35 93-129 15-49 (107)
236 TIGR01243 CDC48 AAA family ATP 97.0 0.00064 1.4E-08 67.8 4.4 34 92-125 211-244 (733)
237 COG1618 Predicted nucleotide k 97.0 0.00064 1.4E-08 57.4 3.5 25 93-117 5-29 (179)
238 PRK08181 transposase; Validate 97.0 0.00094 2E-08 59.6 4.8 40 92-131 105-149 (269)
239 PLN03025 replication factor C 97.0 0.0013 2.8E-08 59.1 5.6 24 94-117 35-58 (319)
240 COG1072 CoaA Panthothenate kin 97.0 0.0021 4.5E-08 58.0 6.8 26 93-118 82-107 (283)
241 PRK05800 cobU adenosylcobinami 97.0 0.00082 1.8E-08 55.8 4.0 31 94-124 2-34 (170)
242 cd02029 PRK_like Phosphoribulo 97.0 0.0005 1.1E-08 61.9 2.8 34 96-129 2-40 (277)
243 PF13401 AAA_22: AAA domain; P 97.0 0.00072 1.6E-08 51.5 3.3 25 93-117 4-28 (131)
244 PF00625 Guanylate_kin: Guanyl 97.0 0.00097 2.1E-08 54.9 4.3 27 92-118 1-27 (183)
245 KOG3078 Adenylate kinase [Nucl 97.0 0.0014 3E-08 57.8 5.4 40 92-131 14-53 (235)
246 PRK07429 phosphoribulokinase; 97.0 0.00074 1.6E-08 61.8 3.9 36 93-128 8-46 (327)
247 PRK06526 transposase; Provisio 97.0 0.001 2.2E-08 58.8 4.5 39 93-131 98-141 (254)
248 KOG0743 AAA+-type ATPase [Post 96.9 0.00059 1.3E-08 65.0 3.2 32 94-125 236-267 (457)
249 PRK14086 dnaA chromosomal repl 96.9 0.0033 7.2E-08 62.2 8.5 38 94-131 315-359 (617)
250 PRK12377 putative replication 96.9 0.0026 5.7E-08 56.1 7.1 39 93-131 101-144 (248)
251 PRK08099 bifunctional DNA-bind 96.9 0.00091 2E-08 62.7 4.4 30 93-122 219-248 (399)
252 TIGR00362 DnaA chromosomal rep 96.9 0.0073 1.6E-07 55.9 10.2 39 93-131 136-181 (405)
253 TIGR01526 nadR_NMN_Atrans nico 96.9 0.001 2.2E-08 60.6 4.4 38 85-123 155-192 (325)
254 PRK14962 DNA polymerase III su 96.9 0.0013 2.8E-08 63.0 5.3 27 93-119 36-62 (472)
255 PRK14088 dnaA chromosomal repl 96.9 0.0098 2.1E-07 56.3 11.0 38 94-131 131-175 (440)
256 COG2074 2-phosphoglycerate kin 96.9 0.0097 2.1E-07 53.6 10.1 42 88-129 84-126 (299)
257 PRK13341 recombination factor 96.9 0.0015 3.2E-08 65.7 5.5 47 77-127 40-86 (725)
258 TIGR01618 phage_P_loop phage n 96.9 0.0015 3.3E-08 56.8 4.8 39 93-133 12-50 (220)
259 PF05729 NACHT: NACHT domain 96.9 0.0011 2.4E-08 51.8 3.6 23 95-117 2-24 (166)
260 PRK05642 DNA replication initi 96.9 0.0032 6.9E-08 54.4 6.8 37 93-129 45-86 (234)
261 PRK14956 DNA polymerase III su 96.9 0.0014 3E-08 63.2 4.9 28 93-120 40-67 (484)
262 cd02026 PRK Phosphoribulokinas 96.9 0.00092 2E-08 59.5 3.5 33 96-128 2-37 (273)
263 PRK14961 DNA polymerase III su 96.8 0.0017 3.7E-08 59.6 5.3 27 93-119 38-64 (363)
264 KOG0735 AAA+-type ATPase [Post 96.8 0.004 8.7E-08 62.7 8.1 41 93-133 701-743 (952)
265 cd03115 SRP The signal recogni 96.8 0.0013 2.9E-08 53.2 4.1 33 95-127 2-39 (173)
266 PRK07952 DNA replication prote 96.8 0.0069 1.5E-07 53.3 8.7 38 94-131 100-142 (244)
267 PRK11034 clpA ATP-dependent Cl 96.8 0.0011 2.4E-08 67.0 4.0 32 94-125 489-520 (758)
268 KOG2028 ATPase related to the 96.8 0.0019 4.2E-08 61.0 5.3 50 73-126 146-198 (554)
269 COG0802 Predicted ATPase or ki 96.8 0.0028 6.1E-08 52.4 5.6 41 79-119 10-51 (149)
270 PF00005 ABC_tran: ABC transpo 96.8 0.0011 2.4E-08 51.2 3.0 26 92-117 10-35 (137)
271 PHA02544 44 clamp loader, smal 96.8 0.0028 6.1E-08 56.1 5.9 31 93-123 43-73 (316)
272 PF13191 AAA_16: AAA ATPase do 96.8 0.0012 2.6E-08 52.9 3.2 26 92-117 23-48 (185)
273 PF01745 IPT: Isopentenyl tran 96.8 0.0013 2.8E-08 57.7 3.5 34 95-128 3-36 (233)
274 TIGR03499 FlhF flagellar biosy 96.8 0.0031 6.6E-08 56.2 6.0 36 92-127 193-235 (282)
275 KOG0738 AAA+-type ATPase [Post 96.8 0.0023 4.9E-08 60.7 5.3 31 94-124 246-276 (491)
276 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.0013 2.9E-08 71.7 4.2 38 92-129 1629-1668(2281)
277 COG1224 TIP49 DNA helicase TIP 96.7 0.0027 5.9E-08 59.6 5.7 35 89-123 61-97 (450)
278 cd01394 radB RadB. The archaea 96.7 0.0018 4E-08 54.4 4.2 38 89-126 15-57 (218)
279 TIGR02237 recomb_radB DNA repa 96.7 0.0019 4.1E-08 53.8 4.3 38 89-126 8-50 (209)
280 KOG0737 AAA+-type ATPase [Post 96.7 0.0011 2.4E-08 61.9 3.0 34 92-125 126-159 (386)
281 PF08303 tRNA_lig_kinase: tRNA 96.7 0.0011 2.3E-08 55.8 2.7 32 96-127 2-34 (168)
282 COG1124 DppF ABC-type dipeptid 96.7 0.0014 3E-08 58.3 3.4 34 92-125 32-69 (252)
283 KOG0745 Putative ATP-dependent 96.7 0.0015 3.3E-08 62.6 3.9 36 90-125 223-258 (564)
284 PRK06835 DNA replication prote 96.7 0.0034 7.4E-08 57.5 6.1 39 93-131 183-226 (329)
285 CHL00095 clpC Clp protease ATP 96.7 0.0023 5E-08 64.9 5.3 26 92-117 199-224 (821)
286 PRK15455 PrkA family serine pr 96.7 0.002 4.3E-08 63.7 4.6 27 92-118 102-128 (644)
287 PRK14955 DNA polymerase III su 96.7 0.0027 5.7E-08 59.1 5.3 28 93-120 38-65 (397)
288 PRK00411 cdc6 cell division co 96.7 0.0039 8.5E-08 56.7 6.2 26 92-117 54-79 (394)
289 COG2255 RuvB Holliday junction 96.7 0.0017 3.8E-08 59.2 3.8 30 93-122 52-81 (332)
290 PRK11784 tRNA 2-selenouridine 96.7 0.0065 1.4E-07 56.1 7.7 108 93-203 141-254 (345)
291 PRK10865 protein disaggregatio 96.7 0.0025 5.5E-08 65.0 5.3 26 92-117 198-223 (857)
292 TIGR02928 orc1/cdc6 family rep 96.7 0.0023 4.9E-08 57.6 4.5 26 92-117 39-64 (365)
293 PRK06645 DNA polymerase III su 96.7 0.0025 5.4E-08 61.7 5.0 28 93-120 43-70 (507)
294 PRK12724 flagellar biosynthesi 96.6 0.0045 9.7E-08 58.9 6.6 37 92-128 222-264 (432)
295 PRK14964 DNA polymerase III su 96.6 0.0027 5.8E-08 61.3 5.1 31 89-120 32-62 (491)
296 PRK14958 DNA polymerase III su 96.6 0.0031 6.6E-08 61.0 5.4 39 79-120 27-65 (509)
297 PRK14960 DNA polymerase III su 96.6 0.0029 6.2E-08 63.3 5.3 38 79-119 26-63 (702)
298 TIGR03015 pepcterm_ATPase puta 96.6 0.0021 4.5E-08 55.2 3.8 26 93-118 43-68 (269)
299 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0019 4.1E-08 54.2 3.5 26 92-117 29-54 (218)
300 KOG0729 26S proteasome regulat 96.6 0.0053 1.2E-07 56.1 6.5 42 92-133 210-253 (435)
301 cd03269 ABC_putative_ATPase Th 96.6 0.002 4.3E-08 53.8 3.5 25 92-116 25-49 (210)
302 COG4619 ABC-type uncharacteriz 96.6 0.0019 4.1E-08 55.4 3.3 26 92-117 28-53 (223)
303 TIGR01166 cbiO cobalt transpor 96.6 0.0021 4.5E-08 53.0 3.5 25 92-116 17-41 (190)
304 TIGR00960 3a0501s02 Type II (G 96.6 0.002 4.4E-08 54.0 3.5 26 92-117 28-53 (216)
305 PRK08727 hypothetical protein; 96.6 0.016 3.5E-07 49.9 9.2 37 93-129 41-82 (233)
306 PRK08939 primosomal protein Dn 96.6 0.0066 1.4E-07 55.0 7.0 40 92-131 155-199 (306)
307 cd03292 ABC_FtsE_transporter F 96.6 0.0021 4.6E-08 53.6 3.5 26 92-117 26-51 (214)
308 KOG1969 DNA replication checkp 96.6 0.0018 3.9E-08 65.2 3.5 39 88-126 321-359 (877)
309 TIGR02673 FtsE cell division A 96.6 0.0021 4.6E-08 53.7 3.5 26 92-117 27-52 (214)
310 cd03261 ABC_Org_Solvent_Resist 96.6 0.0021 4.5E-08 54.7 3.5 26 92-117 25-50 (235)
311 PHA02575 1 deoxynucleoside mon 96.6 0.0038 8.2E-08 54.8 5.1 36 95-131 2-38 (227)
312 COG1855 ATPase (PilT family) [ 96.6 0.0031 6.6E-08 60.8 4.9 40 73-117 248-287 (604)
313 COG1116 TauB ABC-type nitrate/ 96.6 0.0021 4.5E-08 57.1 3.5 24 92-115 28-51 (248)
314 TIGR02639 ClpA ATP-dependent C 96.6 0.0022 4.7E-08 64.2 4.1 34 95-128 486-521 (731)
315 KOG0989 Replication factor C, 96.6 0.0027 5.9E-08 58.4 4.3 47 79-129 47-93 (346)
316 PRK11331 5-methylcytosine-spec 96.6 0.002 4.3E-08 61.7 3.6 28 92-119 193-220 (459)
317 KOG0741 AAA+-type ATPase [Post 96.5 0.0032 7E-08 61.7 5.0 51 94-144 257-312 (744)
318 TIGR02782 TrbB_P P-type conjug 96.5 0.0044 9.5E-08 55.9 5.6 37 93-129 132-173 (299)
319 cd03256 ABC_PhnC_transporter A 96.5 0.0022 4.9E-08 54.5 3.5 26 92-117 26-51 (241)
320 PRK14949 DNA polymerase III su 96.5 0.003 6.6E-08 64.9 4.9 38 80-120 28-65 (944)
321 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0023 5E-08 53.4 3.5 26 92-117 26-51 (211)
322 cd01120 RecA-like_NTPases RecA 96.5 0.0024 5.1E-08 49.4 3.3 33 96-128 2-39 (165)
323 PRK06921 hypothetical protein; 96.5 0.0064 1.4E-07 53.9 6.4 38 92-129 116-159 (266)
324 TIGR02315 ABC_phnC phosphonate 96.5 0.0023 5E-08 54.5 3.5 26 92-117 27-52 (243)
325 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0024 5.2E-08 53.3 3.5 26 92-117 25-50 (213)
326 PF03193 DUF258: Protein of un 96.5 0.0025 5.5E-08 53.1 3.6 32 85-116 27-58 (161)
327 PRK13695 putative NTPase; Prov 96.5 0.0038 8.3E-08 50.9 4.6 27 94-120 1-30 (174)
328 cd03224 ABC_TM1139_LivF_branch 96.5 0.0023 4.9E-08 53.8 3.3 25 92-116 25-49 (222)
329 cd01130 VirB11-like_ATPase Typ 96.5 0.0027 5.9E-08 52.7 3.7 25 93-117 25-49 (186)
330 PRK00771 signal recognition pa 96.5 0.0051 1.1E-07 58.6 6.0 36 92-127 94-134 (437)
331 cd03260 ABC_PstB_phosphate_tra 96.5 0.0025 5.4E-08 53.9 3.5 26 92-117 25-50 (227)
332 PF00448 SRP54: SRP54-type pro 96.5 0.0027 5.8E-08 53.9 3.7 35 93-127 1-40 (196)
333 COG3839 MalK ABC-type sugar tr 96.5 0.0022 4.9E-08 59.2 3.5 23 93-115 29-51 (338)
334 cd03219 ABC_Mj1267_LivG_branch 96.5 0.0022 4.9E-08 54.4 3.2 25 92-116 25-49 (236)
335 TIGR03608 L_ocin_972_ABC putat 96.5 0.0026 5.6E-08 52.8 3.5 26 92-117 23-48 (206)
336 cd03259 ABC_Carb_Solutes_like 96.5 0.0025 5.5E-08 53.3 3.5 25 92-116 25-49 (213)
337 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0025 5.5E-08 53.7 3.5 26 92-117 29-54 (220)
338 cd03235 ABC_Metallic_Cations A 96.5 0.0023 5E-08 53.5 3.2 25 92-116 24-48 (213)
339 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0026 5.6E-08 53.1 3.5 26 92-117 25-50 (205)
340 cd03258 ABC_MetN_methionine_tr 96.5 0.0026 5.7E-08 54.0 3.5 26 92-117 30-55 (233)
341 TIGR01425 SRP54_euk signal rec 96.5 0.012 2.6E-07 56.0 8.3 36 93-128 100-140 (429)
342 PF08477 Miro: Miro-like prote 96.5 0.003 6.5E-08 47.3 3.5 22 95-116 1-22 (119)
343 cd03301 ABC_MalK_N The N-termi 96.5 0.0027 5.9E-08 53.0 3.5 26 92-117 25-50 (213)
344 cd03263 ABC_subfamily_A The AB 96.5 0.0027 6E-08 53.3 3.5 26 92-117 27-52 (220)
345 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0028 6.1E-08 53.3 3.5 25 92-116 30-54 (221)
346 PF10662 PduV-EutP: Ethanolami 96.4 0.0025 5.3E-08 52.2 3.0 22 94-115 2-23 (143)
347 cd03265 ABC_DrrA DrrA is the A 96.4 0.0028 6.1E-08 53.4 3.5 25 92-116 25-49 (220)
348 TIGR01978 sufC FeS assembly AT 96.4 0.0027 5.9E-08 54.0 3.4 25 92-116 25-49 (243)
349 PRK14963 DNA polymerase III su 96.4 0.0038 8.2E-08 60.3 4.8 27 93-119 36-62 (504)
350 TIGR03410 urea_trans_UrtE urea 96.4 0.0027 5.9E-08 53.7 3.4 26 92-117 25-50 (230)
351 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0029 6.4E-08 51.6 3.5 26 92-117 25-50 (173)
352 PRK13541 cytochrome c biogenes 96.4 0.0031 6.6E-08 52.4 3.5 26 92-117 25-50 (195)
353 KOG0742 AAA+-type ATPase [Post 96.4 0.0033 7.2E-08 60.2 4.1 46 77-122 360-413 (630)
354 cd03257 ABC_NikE_OppD_transpor 96.4 0.003 6.4E-08 53.2 3.4 26 92-117 30-55 (228)
355 PRK08116 hypothetical protein; 96.4 0.0055 1.2E-07 54.3 5.2 39 93-131 114-157 (268)
356 cd03266 ABC_NatA_sodium_export 96.4 0.0031 6.8E-08 52.9 3.5 26 92-117 30-55 (218)
357 TIGR03864 PQQ_ABC_ATP ABC tran 96.4 0.0031 6.8E-08 53.8 3.5 25 92-116 26-50 (236)
358 cd03218 ABC_YhbG The ABC trans 96.4 0.0031 6.8E-08 53.4 3.5 25 92-116 25-49 (232)
359 PRK11124 artP arginine transpo 96.4 0.0032 6.8E-08 53.9 3.5 25 92-116 27-51 (242)
360 PRK10584 putative ABC transpor 96.4 0.0032 7E-08 53.2 3.6 26 92-117 35-60 (228)
361 PRK14957 DNA polymerase III su 96.4 0.0046 1E-07 60.4 5.0 26 94-119 39-64 (546)
362 COG1484 DnaC DNA replication p 96.4 0.025 5.3E-07 49.9 9.2 40 92-131 104-148 (254)
363 cd03229 ABC_Class3 This class 96.4 0.0034 7.4E-08 51.5 3.5 25 92-116 25-49 (178)
364 PRK11629 lolD lipoprotein tran 96.4 0.0032 7E-08 53.6 3.5 26 92-117 34-59 (233)
365 cd03296 ABC_CysA_sulfate_impor 96.4 0.0033 7.1E-08 53.7 3.5 26 92-117 27-52 (239)
366 PRK05703 flhF flagellar biosyn 96.4 0.008 1.7E-07 56.8 6.4 35 93-127 221-262 (424)
367 PRK10247 putative ABC transpor 96.4 0.0034 7.4E-08 53.3 3.5 25 92-116 32-56 (225)
368 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.0041 8.9E-08 52.5 4.0 38 89-126 15-63 (235)
369 PRK00440 rfc replication facto 96.4 0.0072 1.6E-07 53.0 5.7 24 94-117 39-62 (319)
370 PF13479 AAA_24: AAA domain 96.4 0.0039 8.4E-08 53.1 3.8 32 93-127 3-34 (213)
371 PRK14969 DNA polymerase III su 96.4 0.0053 1.1E-07 59.5 5.2 28 93-120 38-65 (527)
372 PRK12422 chromosomal replicati 96.3 0.024 5.1E-07 54.0 9.5 37 94-130 142-183 (445)
373 cd03232 ABC_PDR_domain2 The pl 96.3 0.0034 7.5E-08 52.1 3.4 24 92-115 32-55 (192)
374 PRK15177 Vi polysaccharide exp 96.3 0.0034 7.4E-08 53.2 3.5 25 92-116 12-36 (213)
375 PRK11248 tauB taurine transpor 96.3 0.0034 7.4E-08 54.7 3.5 25 92-116 26-50 (255)
376 cd03247 ABCC_cytochrome_bd The 96.3 0.0037 8E-08 51.2 3.5 26 92-117 27-52 (178)
377 PF03029 ATP_bind_1: Conserved 96.3 0.0036 7.7E-08 54.7 3.6 22 98-119 1-22 (238)
378 COG3709 Uncharacterized compon 96.3 0.013 2.9E-07 49.7 6.8 103 92-197 4-126 (192)
379 PRK11264 putative amino-acid A 96.3 0.0036 7.7E-08 53.7 3.5 26 92-117 28-53 (250)
380 PRK08691 DNA polymerase III su 96.3 0.0054 1.2E-07 61.5 5.2 28 93-120 38-65 (709)
381 PRK14247 phosphate ABC transpo 96.3 0.0036 7.8E-08 53.8 3.5 26 92-117 28-53 (250)
382 KOG0727 26S proteasome regulat 96.3 0.012 2.6E-07 53.6 6.9 42 92-133 188-231 (408)
383 PRK13540 cytochrome c biogenes 96.3 0.0038 8.2E-08 52.0 3.5 26 92-117 26-51 (200)
384 cd03223 ABCD_peroxisomal_ALDP 96.3 0.0039 8.5E-08 50.8 3.5 26 92-117 26-51 (166)
385 KOG0651 26S proteasome regulat 96.3 0.0075 1.6E-07 55.8 5.6 41 93-133 166-208 (388)
386 cd03268 ABC_BcrA_bacitracin_re 96.3 0.0038 8.3E-08 52.1 3.5 25 92-116 25-49 (208)
387 cd01918 HprK_C HprK/P, the bif 96.3 0.0052 1.1E-07 50.6 4.1 34 92-126 13-46 (149)
388 PRK14250 phosphate ABC transpo 96.3 0.0038 8.2E-08 53.6 3.5 26 92-117 28-53 (241)
389 cd03234 ABCG_White The White s 96.3 0.0037 8.1E-08 53.0 3.4 26 92-117 32-57 (226)
390 PRK14242 phosphate transporter 96.3 0.0039 8.3E-08 53.7 3.5 25 92-116 31-55 (253)
391 cd03264 ABC_drug_resistance_li 96.3 0.0036 7.9E-08 52.3 3.2 23 93-116 26-48 (211)
392 cd04155 Arl3 Arl3 subfamily. 96.3 0.0054 1.2E-07 48.7 4.0 28 89-116 10-37 (173)
393 PRK09493 glnQ glutamine ABC tr 96.3 0.004 8.7E-08 53.1 3.5 26 92-117 26-51 (240)
394 PRK10908 cell division protein 96.3 0.0041 9E-08 52.5 3.5 26 92-117 27-52 (222)
395 COG1126 GlnQ ABC-type polar am 96.3 0.0038 8.2E-08 55.0 3.4 33 92-124 27-63 (240)
396 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.0069 1.5E-07 42.7 4.2 30 96-125 2-34 (99)
397 PRK10895 lipopolysaccharide AB 96.3 0.0041 8.8E-08 53.1 3.5 26 92-117 28-53 (241)
398 cd03254 ABCC_Glucan_exporter_l 96.3 0.0041 9E-08 52.5 3.5 26 92-117 28-53 (229)
399 cd03233 ABC_PDR_domain1 The pl 96.3 0.0036 7.8E-08 52.5 3.1 26 92-117 32-57 (202)
400 PRK14262 phosphate ABC transpo 96.3 0.0041 8.9E-08 53.4 3.5 25 92-116 28-52 (250)
401 TIGR01184 ntrCD nitrate transp 96.3 0.0042 9.1E-08 53.1 3.5 26 92-117 10-35 (230)
402 PRK10744 pstB phosphate transp 96.2 0.004 8.8E-08 54.0 3.5 26 92-117 38-63 (260)
403 PRK13539 cytochrome c biogenes 96.2 0.0043 9.3E-08 52.1 3.5 26 92-117 27-52 (207)
404 PRK12323 DNA polymerase III su 96.2 0.02 4.4E-07 57.3 8.7 38 79-119 27-64 (700)
405 PRK13543 cytochrome c biogenes 96.2 0.0042 9.1E-08 52.4 3.5 25 92-116 36-60 (214)
406 TIGR02323 CP_lyasePhnK phospho 96.2 0.0041 8.8E-08 53.5 3.5 26 92-117 28-53 (253)
407 cd03216 ABC_Carb_Monos_I This 96.2 0.0045 9.7E-08 50.3 3.5 25 92-116 25-49 (163)
408 TIGR03771 anch_rpt_ABC anchore 96.2 0.0041 8.9E-08 52.8 3.4 25 92-116 5-29 (223)
409 TIGR03005 ectoine_ehuA ectoine 96.2 0.0041 8.9E-08 53.6 3.5 26 92-117 25-50 (252)
410 PF01078 Mg_chelatase: Magnesi 96.2 0.0044 9.6E-08 53.6 3.6 25 93-117 22-46 (206)
411 PRK11300 livG leucine/isoleuci 96.2 0.0039 8.5E-08 53.6 3.3 25 92-116 30-54 (255)
412 TIGR01189 ccmA heme ABC export 96.2 0.0044 9.6E-08 51.5 3.5 26 92-117 25-50 (198)
413 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0043 9.4E-08 52.6 3.5 26 92-117 27-52 (234)
414 PRK14274 phosphate ABC transpo 96.2 0.0043 9.3E-08 53.7 3.5 26 92-117 37-62 (259)
415 cd03215 ABC_Carb_Monos_II This 96.2 0.0044 9.4E-08 51.0 3.4 26 92-117 25-50 (182)
416 PRK10771 thiQ thiamine transpo 96.2 0.0042 9.1E-08 52.8 3.4 25 92-116 24-48 (232)
417 PRK14267 phosphate ABC transpo 96.2 0.0043 9.4E-08 53.4 3.5 25 92-116 29-53 (253)
418 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0042 9.1E-08 52.0 3.3 25 92-116 24-48 (177)
419 TIGR02770 nickel_nikD nickel i 96.2 0.0043 9.4E-08 52.8 3.4 26 92-117 11-36 (230)
420 cd01131 PilT Pilus retraction 96.2 0.0047 1E-07 51.9 3.6 24 95-118 3-26 (198)
421 cd03246 ABCC_Protease_Secretio 96.2 0.0049 1.1E-07 50.3 3.6 26 92-117 27-52 (173)
422 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0046 1E-07 52.2 3.5 26 92-117 39-64 (226)
423 PF00931 NB-ARC: NB-ARC domain 96.2 0.0081 1.8E-07 51.8 5.1 25 92-116 18-42 (287)
424 TIGR03346 chaperone_ClpB ATP-d 96.2 0.007 1.5E-07 61.7 5.4 39 78-117 180-218 (852)
425 cd03228 ABCC_MRP_Like The MRP 96.2 0.005 1.1E-07 50.2 3.6 26 92-117 27-52 (171)
426 PLN02924 thymidylate kinase 96.2 0.005 1.1E-07 53.2 3.7 30 91-120 14-43 (220)
427 PLN02796 D-glycerate 3-kinase 96.2 0.0078 1.7E-07 55.8 5.2 36 93-128 100-140 (347)
428 cd03250 ABCC_MRP_domain1 Domai 96.2 0.0048 1E-07 51.4 3.5 26 92-117 30-55 (204)
429 cd03214 ABC_Iron-Siderophores_ 96.2 0.0049 1.1E-07 50.6 3.5 26 92-117 24-49 (180)
430 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0047 1E-07 52.9 3.5 26 92-117 26-51 (242)
431 PRK14256 phosphate ABC transpo 96.2 0.0046 1E-07 53.2 3.5 26 92-117 29-54 (252)
432 COG0465 HflB ATP-dependent Zn 96.2 0.011 2.4E-07 58.3 6.5 55 79-133 157-225 (596)
433 PRK13531 regulatory ATPase Rav 96.2 0.0041 8.9E-08 60.1 3.4 30 89-118 35-64 (498)
434 cd03298 ABC_ThiQ_thiamine_tran 96.2 0.0049 1.1E-07 51.5 3.5 26 92-117 23-48 (211)
435 PRK05896 DNA polymerase III su 96.2 0.0095 2.1E-07 58.9 6.0 27 93-119 38-64 (605)
436 TIGR00972 3a0107s01c2 phosphat 96.2 0.0048 1E-07 53.0 3.5 26 92-117 26-51 (247)
437 PRK14244 phosphate ABC transpo 96.2 0.0049 1.1E-07 53.1 3.6 25 92-116 30-54 (251)
438 PRK14241 phosphate transporter 96.2 0.0047 1E-07 53.4 3.5 25 92-116 29-53 (258)
439 cd03245 ABCC_bacteriocin_expor 96.2 0.0049 1.1E-07 51.7 3.5 26 92-117 29-54 (220)
440 PRK11247 ssuB aliphatic sulfon 96.2 0.0048 1E-07 54.1 3.5 26 92-117 37-62 (257)
441 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0048 1E-07 53.7 3.5 26 92-117 24-49 (246)
442 TIGR03345 VI_ClpV1 type VI sec 96.2 0.006 1.3E-07 62.4 4.7 39 78-117 194-232 (852)
443 PF13245 AAA_19: Part of AAA d 96.2 0.0069 1.5E-07 44.0 3.8 25 93-117 10-35 (76)
444 PRK10575 iron-hydroxamate tran 96.2 0.0044 9.6E-08 54.0 3.3 25 92-116 36-60 (265)
445 PRK14255 phosphate ABC transpo 96.2 0.0049 1.1E-07 53.0 3.5 25 92-116 30-54 (252)
446 PRK13538 cytochrome c biogenes 96.2 0.005 1.1E-07 51.4 3.5 25 92-116 26-50 (204)
447 cd03252 ABCC_Hemolysin The ABC 96.2 0.005 1.1E-07 52.4 3.5 26 92-117 27-52 (237)
448 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.2 0.005 1.1E-07 52.4 3.5 26 92-117 28-53 (238)
449 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.0049 1.1E-07 52.5 3.4 25 92-116 47-71 (224)
450 PRK14954 DNA polymerase III su 96.1 0.0078 1.7E-07 59.6 5.3 28 93-120 38-65 (620)
451 PRK11701 phnK phosphonate C-P 96.1 0.0049 1.1E-07 53.3 3.5 26 92-117 31-56 (258)
452 TIGR02324 CP_lyasePhnL phospho 96.1 0.0051 1.1E-07 51.9 3.5 32 92-123 33-68 (224)
453 PF03668 ATP_bind_2: P-loop AT 96.1 0.0051 1.1E-07 55.6 3.7 29 94-123 2-30 (284)
454 cd01128 rho_factor Transcripti 96.1 0.004 8.7E-08 54.9 2.9 33 87-119 10-42 (249)
455 PRK10416 signal recognition pa 96.1 0.0054 1.2E-07 55.9 3.9 35 92-126 113-152 (318)
456 cd03238 ABC_UvrA The excision 96.1 0.0053 1.2E-07 51.3 3.5 24 92-115 20-43 (176)
457 PRK14239 phosphate transporter 96.1 0.005 1.1E-07 52.8 3.5 25 92-116 30-54 (252)
458 PRK11034 clpA ATP-dependent Cl 96.1 0.035 7.7E-07 56.2 10.0 39 78-117 193-231 (758)
459 PRK11831 putative ABC transpor 96.1 0.0049 1.1E-07 53.9 3.4 26 92-117 32-57 (269)
460 PRK07994 DNA polymerase III su 96.1 0.0072 1.6E-07 60.2 5.0 27 94-120 39-65 (647)
461 TIGR02868 CydC thiol reductant 96.1 0.0046 9.9E-08 58.8 3.5 26 92-117 360-385 (529)
462 PRK14248 phosphate ABC transpo 96.1 0.0052 1.1E-07 53.6 3.5 25 92-116 46-70 (268)
463 PRK14251 phosphate ABC transpo 96.1 0.0053 1.2E-07 52.7 3.5 26 92-117 29-54 (251)
464 TIGR00602 rad24 checkpoint pro 96.1 0.0048 1E-07 61.3 3.6 31 93-123 110-140 (637)
465 PRK14261 phosphate ABC transpo 96.1 0.0052 1.1E-07 53.0 3.5 24 92-115 31-54 (253)
466 TIGR01277 thiQ thiamine ABC tr 96.1 0.0054 1.2E-07 51.5 3.5 26 92-117 23-48 (213)
467 PRK14951 DNA polymerase III su 96.1 0.0083 1.8E-07 59.4 5.3 27 93-119 38-64 (618)
468 PRK14722 flhF flagellar biosyn 96.1 0.0057 1.2E-07 57.2 3.9 36 92-127 136-178 (374)
469 PRK10619 histidine/lysine/argi 96.1 0.0053 1.2E-07 53.1 3.5 26 92-117 30-55 (257)
470 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.0054 1.2E-07 49.0 3.3 26 92-117 25-50 (144)
471 PF13086 AAA_11: AAA domain; P 96.1 0.0078 1.7E-07 49.3 4.3 29 89-117 12-41 (236)
472 COG4608 AppF ABC-type oligopep 96.1 0.0047 1E-07 55.4 3.2 35 92-126 38-76 (268)
473 TIGR00064 ftsY signal recognit 96.1 0.006 1.3E-07 54.3 3.8 34 93-126 72-110 (272)
474 PRK13638 cbiO cobalt transport 96.1 0.005 1.1E-07 53.8 3.3 26 92-117 26-51 (271)
475 PRK14273 phosphate ABC transpo 96.1 0.0056 1.2E-07 52.8 3.5 26 92-117 32-57 (254)
476 cd03244 ABCC_MRP_domain2 Domai 96.1 0.0058 1.3E-07 51.3 3.6 25 92-116 29-53 (221)
477 cd03267 ABC_NatA_like Similar 96.1 0.0056 1.2E-07 52.5 3.5 25 92-116 46-70 (236)
478 COG1120 FepC ABC-type cobalami 96.1 0.0047 1E-07 55.1 3.1 37 92-128 27-67 (258)
479 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.0058 1.3E-07 51.0 3.5 25 92-116 33-57 (207)
480 KOG0726 26S proteasome regulat 96.1 0.0047 1E-07 57.0 3.1 42 92-133 218-261 (440)
481 PRK09580 sufC cysteine desulfu 96.1 0.005 1.1E-07 52.6 3.2 25 92-116 26-50 (248)
482 cd03290 ABCC_SUR1_N The SUR do 96.1 0.0058 1.2E-07 51.4 3.5 25 92-116 26-50 (218)
483 CHL00131 ycf16 sulfate ABC tra 96.1 0.0051 1.1E-07 52.8 3.2 24 92-115 32-55 (252)
484 cd03253 ABCC_ATM1_transporter 96.1 0.0058 1.3E-07 51.8 3.5 26 92-117 26-51 (236)
485 PRK14240 phosphate transporter 96.1 0.0057 1.2E-07 52.5 3.5 25 92-116 28-52 (250)
486 PRK14259 phosphate ABC transpo 96.1 0.0056 1.2E-07 53.7 3.5 25 92-116 38-62 (269)
487 PRK13645 cbiO cobalt transport 96.1 0.0055 1.2E-07 54.2 3.5 26 92-117 36-61 (289)
488 PRK15093 antimicrobial peptide 96.1 0.0055 1.2E-07 55.6 3.5 26 92-117 32-57 (330)
489 PRK14253 phosphate ABC transpo 96.1 0.0058 1.3E-07 52.4 3.5 26 92-117 28-53 (249)
490 PRK14952 DNA polymerase III su 96.1 0.0087 1.9E-07 58.9 5.1 27 94-120 36-62 (584)
491 PRK13648 cbiO cobalt transport 96.1 0.0057 1.2E-07 53.4 3.5 25 92-116 34-58 (269)
492 PRK10418 nikD nickel transport 96.1 0.0058 1.3E-07 52.9 3.5 25 92-116 28-52 (254)
493 cd02034 CooC The accessory pro 96.0 0.0088 1.9E-07 46.7 4.1 31 96-126 2-37 (116)
494 PRK14237 phosphate transporter 96.0 0.0061 1.3E-07 53.3 3.6 26 92-117 45-70 (267)
495 PHA02624 large T antigen; Prov 96.0 0.0086 1.9E-07 59.4 4.9 37 88-124 426-462 (647)
496 cd03294 ABC_Pro_Gly_Bertaine T 96.0 0.006 1.3E-07 53.4 3.5 26 92-117 49-74 (269)
497 PRK15056 manganese/iron transp 96.0 0.0059 1.3E-07 53.5 3.5 25 92-116 32-56 (272)
498 cd03213 ABCG_EPDR ABCG transpo 96.0 0.0061 1.3E-07 50.8 3.4 26 92-117 34-59 (194)
499 PRK11614 livF leucine/isoleuci 96.0 0.0056 1.2E-07 52.2 3.2 25 92-116 30-54 (237)
500 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.0079 1.7E-07 52.8 4.2 37 89-125 32-73 (259)
No 1
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=3.5e-29 Score=209.16 Aligned_cols=111 Identities=29% Similarity=0.369 Sum_probs=103.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg 172 (212)
.++|+|+|+|||||||+|+.||++|+++|+|+|.++++..| ++++++|+++||+.||+.|.++++++...++.|||+||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 46899999999999999999999999999999999999999 99999999999999999999999999988789999999
Q ss_pred ceeechhhHHhcc-CCeEEEEEechhhhhcccC
Q 028227 173 GAVQSSANLYEIS-GTFKTWNIIMDRRSSRHGS 204 (212)
Q Consensus 173 G~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R~~~ 204 (212)
|+|.++.|+.+|+ ++++|||+++.+.+.++..
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~ 113 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ 113 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc
Confidence 9999999999998 8899999998754444444
No 2
>PLN02199 shikimate kinase
Probab=99.95 E-value=1.8e-27 Score=213.64 Aligned_cols=123 Identities=34% Similarity=0.503 Sum_probs=116.6
Q ss_pred cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCCCchhhhhhhhchHHHHH
Q 028227 73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGGESAAKAFRESDEKGYQQ 151 (212)
Q Consensus 73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~~si~ei~~~~Ge~~fr~ 151 (212)
+.|+. +||++++++++.+++.+|+|+|++||||||+|+.||+.+|++|+|+|.++++. .| .++.++|+.+|+..||+
T Consensus 83 ~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G-~sI~eIf~~~GE~~FR~ 160 (303)
T PLN02199 83 PFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNG-TSVAEIFVHHGENFFRG 160 (303)
T ss_pred CCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcC-CCHHHHHHHhCHHHHHH
Confidence 78887 59999999999999999999999999999999999999999999999999997 46 89999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCceeechhhHHhccCCeEEEEEechh
Q 028227 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR 197 (212)
Q Consensus 152 ~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~~~~ 197 (212)
.|.++|+++....++||+||||+|+.+.||.+|++|++|||+++.+
T Consensus 161 ~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E 206 (303)
T PLN02199 161 KETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLE 206 (303)
T ss_pred HHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHH
Confidence 9999999998778899999999999999999999999999999754
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.92 E-value=1e-24 Score=183.14 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=101.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~ 170 (212)
..+.+|+|+|+|||||||+|+.||+.+|++|+|+|.++++.+| +++.++|++.|+..||+.|.++++++...+++||+|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~ 86 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL 86 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 3578999999999999999999999999999999999999998 899999999999999999999999998778899999
Q ss_pred CCceeechhhHHhcc-CCeEEEEEechhhhhc
Q 028227 171 GNGAVQSSANLYEIS-GTFKTWNIIMDRRSSR 201 (212)
Q Consensus 171 GgG~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R 201 (212)
|||+++++.|++.|+ ++.+|||+++.+.+.+
T Consensus 87 GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~ 118 (182)
T PRK13948 87 GGGTFMHEENRRKLLSRGPVVVLWASPETIYE 118 (182)
T ss_pred CCcEEcCHHHHHHHHcCCeEEEEECCHHHHHH
Confidence 999999999999887 7899999997654433
No 4
>PRK13949 shikimate kinase; Provisional
Probab=99.90 E-value=1.7e-23 Score=172.81 Aligned_cols=107 Identities=23% Similarity=0.303 Sum_probs=98.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
++|+|+|+|||||||+|+.||+.++++|+|+|.++++..+ .++.+++++.|++.|++.|.++++++...+++||+||||
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4799999999999999999999999999999999999988 789999999999999999999999988778899999999
Q ss_pred eeechhhHHhcc-CCeEEEEEechhhhhc
Q 028227 174 AVQSSANLYEIS-GTFKTWNIIMDRRSSR 201 (212)
Q Consensus 174 ~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R 201 (212)
++....++++|+ .+++|||+++.+.+.+
T Consensus 81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~ 109 (169)
T PRK13949 81 APCFFDNMELMNASGTTVYLKVSPEVLFV 109 (169)
T ss_pred ccCCHHHHHHHHhCCeEEEEECCHHHHHH
Confidence 999999999997 8999999998654433
No 5
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.90 E-value=7.5e-24 Score=171.98 Aligned_cols=99 Identities=23% Similarity=0.308 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCceeechhhH
Q 028227 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181 (212)
Q Consensus 102 ~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~ 181 (212)
|||||||+|+.||+.||++|+|+|.++++..| +++.+++.+.|++.||+.|.++++++....++||+||||+++.+.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 79999999999999999999999999999999 99999999999999999999999999987799999999999999999
Q ss_pred Hhcc-CCeEEEEEechhhhhc
Q 028227 182 YEIS-GTFKTWNIIMDRRSSR 201 (212)
Q Consensus 182 ~~L~-~g~vV~Ld~~~~~v~R 201 (212)
++|+ .+++|||+.+.+.+.+
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~ 100 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAE 100 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHH
T ss_pred HHHHhCCEEEEEeCCHHHHHH
Confidence 9998 8999999997654433
No 6
>PRK00625 shikimate kinase; Provisional
Probab=99.90 E-value=4.8e-23 Score=171.50 Aligned_cols=102 Identities=24% Similarity=0.319 Sum_probs=94.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCC----chhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~----si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa 169 (212)
++|+|+|+|||||||+|+.||+.+|++|+|+|.++++..| . ++.++++..|++.||+.|.++++.+.. ++.||+
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g-~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs 78 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH-GALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhC-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence 3699999999999999999999999999999999999887 5 889999999999999999999999875 678999
Q ss_pred eCCceeechhhHHhcc-CCeEEEEEechh
Q 028227 170 AGNGAVQSSANLYEIS-GTFKTWNIIMDR 197 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~ 197 (212)
||||++.+++++..|+ .+++|||+++.+
T Consensus 79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e 107 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIA 107 (173)
T ss_pred CCCCccCCHHHHHHHhcCCEEEEEECCHH
Confidence 9999999999999997 789999999854
No 7
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.89 E-value=3.4e-23 Score=198.49 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=98.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
+.+.|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.++|+++||+.||+.|.++++++....++||+||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 357899999999999999999999999999999999999998 9999999999999999999999999887678999999
Q ss_pred CceeechhhHHhc----c-CCeEEEEEechhh
Q 028227 172 NGAVQSSANLYEI----S-GTFKTWNIIMDRR 198 (212)
Q Consensus 172 gG~V~~~~~~~~L----~-~g~vV~Ld~~~~~ 198 (212)
||+|+++.|+++| + ++++|||+++.+.
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~ 115 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKE 115 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 9999999999965 4 6899999997643
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.88 E-value=5e-22 Score=164.94 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=103.6
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEE
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV 168 (212)
+.+.+++|+|+|++||||||+|+.||++||++|+|+|.++++..| .++.+++...|+..|++.|.++++.+...+.+||
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL 84 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 566788999999999999999999999999999999999999887 7888999999999999999999999987788999
Q ss_pred EeCCceeechhhHHhcc-CCeEEEEEechh-hhhcccC
Q 028227 169 CAGNGAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHGS 204 (212)
Q Consensus 169 a~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~~ 204 (212)
+||+|.+..+.++++|+ ++++|||+++.+ +++|...
T Consensus 85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~ 122 (184)
T PRK13946 85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSR 122 (184)
T ss_pred ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcC
Confidence 99999999999999986 889999999865 4455443
No 9
>PRK13947 shikimate kinase; Provisional
Probab=99.88 E-value=6.5e-22 Score=160.13 Aligned_cols=107 Identities=22% Similarity=0.368 Sum_probs=97.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~ 174 (212)
+|+|+|+|||||||+|+.||+.+|++|+|.|.++++..| .++.+++...|+..|++.|.++++.+....++||++|+|+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 799999999999999999999999999999999999988 7888999999999999999999999987778999999999
Q ss_pred eechhhHHhcc-CCeEEEEEechhh-hhcc
Q 028227 175 VQSSANLYEIS-GTFKTWNIIMDRR-SSRH 202 (212)
Q Consensus 175 V~~~~~~~~L~-~g~vV~Ld~~~~~-v~R~ 202 (212)
+++..++..|+ .+++|||+++.+. .+|.
T Consensus 82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl 111 (171)
T PRK13947 82 VLNPENVVQLRKNGVVICLKARPEVILRRV 111 (171)
T ss_pred cCCHHHHHHHHhCCEEEEEECCHHHHHHHh
Confidence 99998888887 7899999998653 3443
No 10
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.87 E-value=1.1e-21 Score=162.10 Aligned_cols=105 Identities=25% Similarity=0.402 Sum_probs=97.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
+..+|+|+|++||||||+++.||+.+|++|+|+|..+++..| .++.++++..|+..|++.|.++++.+...+.+|+++|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 457899999999999999999999999999999999999888 7888999999999999999999999987788999999
Q ss_pred CceeechhhHHhcc-CCeEEEEEechh
Q 028227 172 NGAVQSSANLYEIS-GTFKTWNIIMDR 197 (212)
Q Consensus 172 gG~V~~~~~~~~L~-~g~vV~Ld~~~~ 197 (212)
||++.++.++++|+ .+++|||+++.+
T Consensus 82 gg~v~~~~~~~~l~~~~~vv~L~~~~e 108 (172)
T PRK05057 82 GGSVKSRETRNRLSARGVVVYLETTIE 108 (172)
T ss_pred CchhCCHHHHHHHHhCCEEEEEeCCHH
Confidence 99999999999996 899999999764
No 11
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.86 E-value=5.1e-21 Score=155.38 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=94.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
++|+|+|++||||||+|+.||+++|++|+|.|.+++...| +++.+++++.|++.|++.|.++++.+. ..++||++|+|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 5799999999999999999999999999999999999988 888999999999999999999998765 57789999999
Q ss_pred eeechhhHHhcc-CCeEEEEEechh
Q 028227 174 AVQSSANLYEIS-GTFKTWNIIMDR 197 (212)
Q Consensus 174 ~V~~~~~~~~L~-~g~vV~Ld~~~~ 197 (212)
+|+...++++|+ ++++|||+++.+
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~ 105 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVS 105 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHH
Confidence 999999999997 889999999764
No 12
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.84 E-value=4.4e-20 Score=147.98 Aligned_cols=112 Identities=30% Similarity=0.425 Sum_probs=99.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~ 170 (212)
+++..|+|+|+|||||||+|+.||+.+|++|+|.|.++++..| .++.+++.+.|+..|++.|.++++++....++||++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST 80 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 3578999999999999999999999999999999999999888 788888989999999999999999998766789999
Q ss_pred CCceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227 171 GNGAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG 203 (212)
Q Consensus 171 GgG~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~ 203 (212)
|+|.++...++++|+ ++++|||+++.+ .++|..
T Consensus 81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~ 115 (175)
T PRK00131 81 GGGAVLREENRALLRERGTVVYLDASFEELLRRLR 115 (175)
T ss_pred CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhc
Confidence 999999999999995 789999999865 334443
No 13
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.83 E-value=4e-20 Score=175.60 Aligned_cols=113 Identities=26% Similarity=0.381 Sum_probs=101.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~ 174 (212)
+|+|+|+|||||||+|+.||+.+|++|+|+|.++++..| +++.++++++|+++||+.|.++++++....++||+||+|+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggv 80 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGV 80 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcc
Confidence 699999999999999999999999999999999999988 8999999999999999999999999987778999999999
Q ss_pred eechhhHHhccCCeEEEEEechh-hhhcccCCCCC
Q 028227 175 VQSSANLYEISGTFKTWNIIMDR-RSSRHGSKNGP 208 (212)
Q Consensus 175 V~~~~~~~~L~~g~vV~Ld~~~~-~v~R~~~~~~~ 208 (212)
++++.++++|+.+.+|||+++.+ ..+|....+||
T Consensus 81 v~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RP 115 (488)
T PRK13951 81 VIDPENRELLKKEKTLFLYAPPEVLMERVTTENRP 115 (488)
T ss_pred ccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCC
Confidence 99999999998777999999754 44444334444
No 14
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.82 E-value=1.2e-19 Score=143.48 Aligned_cols=110 Identities=31% Similarity=0.427 Sum_probs=96.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~ 174 (212)
+|+|+|+|||||||+|+.||+.+|++++|.|.++++..| .++.+++...|++.|+..|.+++..+....++||++|+|.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 589999999999999999999999999999999999988 6788999999999999999999999988888999999999
Q ss_pred eechhhHHhcc-CCeEEEEEechhh-hhcccCC
Q 028227 175 VQSSANLYEIS-GTFKTWNIIMDRR-SSRHGSK 205 (212)
Q Consensus 175 V~~~~~~~~L~-~g~vV~Ld~~~~~-v~R~~~~ 205 (212)
+.+..+++.+. ++++|||+++.+. ++|...+
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccC
Confidence 98887766654 8899999998764 4554433
No 15
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.78 E-value=2.5e-18 Score=154.17 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=97.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhc-CCCEEEEe
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA 170 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~-~~~~VVa~ 170 (212)
++.+|+|+|++||||||+|+.||+.+|++|+|+|..+++..| .++.+++...|++.|++.|.+++..+.. .+..||++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~ 210 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLAT 210 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence 468999999999999999999999999999999999999988 8899999999999999999999998764 45689999
Q ss_pred CCceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227 171 GNGAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG 203 (212)
Q Consensus 171 GgG~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~ 203 (212)
|+|++..+.++.++. ++++|||+++.+ +++|..
T Consensus 211 Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~ 245 (309)
T PRK08154 211 GGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVR 245 (309)
T ss_pred CCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHh
Confidence 999999888887775 789999999865 445543
No 16
>PRK09169 hypothetical protein; Validated
Probab=99.53 E-value=2.9e-14 Score=151.36 Aligned_cols=105 Identities=11% Similarity=-0.025 Sum_probs=97.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa 169 (212)
.|.+.+|+|+|++|+||||||+.||..|++.|+|+|..+++..| ++|.+||..+| .|++.|.+.+..+.. ...||+
T Consensus 2107 rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLS 2182 (2316)
T PRK09169 2107 RLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR-WEVVLP 2182 (2316)
T ss_pred HHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEe
Confidence 45678999999999999999999999999999999999999998 89999999999 999999999999885 789999
Q ss_pred eCCceeechhhHHhcc-CCeEEEEEechhh
Q 028227 170 AGNGAVQSSANLYEIS-GTFKTWNIIMDRR 198 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~~ 198 (212)
+|||++....++..|+ +|++||++.+...
T Consensus 2183 TGGGav~~~enr~~L~~~GlvV~L~an~~t 2212 (2316)
T PRK09169 2183 AEGFGAAVEQARQALGAKGLRVMRINNGFA 2212 (2316)
T ss_pred CCCCcccCHHHHHHHHHCCEEEEEECCHHH
Confidence 9999999999999997 8999999997543
No 17
>PRK03839 putative kinase; Provisional
Probab=99.50 E-value=7.6e-14 Score=114.51 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=69.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~ 174 (212)
.|+|+|+|||||||+|+.||++++++|+|+|+++++. .+.+.+...++..|+..+..+.+.+. .+++|+ +|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~vIi-dG~-- 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEFK-EKNVVL-DGH-- 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhcc-CCCEEE-Eec--
Confidence 6999999999999999999999999999999998763 23455656677788888888776543 345555 331
Q ss_pred eechhhHHhccCCeEEEEEechhhhhc
Q 028227 175 VQSSANLYEISGTFKTWNIIMDRRSSR 201 (212)
Q Consensus 175 V~~~~~~~~L~~g~vV~Ld~~~~~v~R 201 (212)
...++..+++|||+++.+.+.+
T Consensus 74 -----~~~l~~~~~vi~L~~~~~~~~~ 95 (180)
T PRK03839 74 -----LSHLLPVDYVIVLRAHPKIIKE 95 (180)
T ss_pred -----cccccCCCEEEEEECCHHHHHH
Confidence 1123347899999997644333
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.40 E-value=2.8e-12 Score=108.58 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=70.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchH---------HHHHHHHHHHHHH-h
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK---------GYQQAETEVLKQL-S 161 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~---------~fr~~E~~vL~~L-~ 161 (212)
.+.+|+|+|+|||||||+|+.||+.+|++++++|+++++..+ .++.++....|.. .-.+.+..+++.. .
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999998764 3443333322221 1122444555544 3
Q ss_pred cCCCEEEEeCCceeechhhHHhc----cCCeEEEEEechhhhh
Q 028227 162 SMGRLVVCAGNGAVQSSANLYEI----SGTFKTWNIIMDRRSS 200 (212)
Q Consensus 162 ~~~~~VVa~GgG~V~~~~~~~~L----~~g~vV~Ld~~~~~v~ 200 (212)
...++|++ |......+.+.| ..+.+|||+++.+.+.
T Consensus 81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~ 120 (215)
T PRK14530 81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELV 120 (215)
T ss_pred cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 35678885 444444444444 2689999999865443
No 19
>PRK06217 hypothetical protein; Validated
Probab=99.37 E-value=1.3e-12 Score=108.02 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=62.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
++|+|+|++||||||+|+.||+.+|++++|+|.++++..+ .+.. ..+... +.+..+++.+....+|||+ |+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~~~----~~~~~~--~~~~~~~~~~~~~~~~vi~-G~- 72 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PPFT----TKRPPE--ERLRLLLEDLRPREGWVLS-GS- 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CCcc----ccCCHH--HHHHHHHHHHhcCCCEEEE-cc-
Confidence 4699999999999999999999999999999999986543 2211 112221 2234455566556788987 22
Q ss_pred eeechhhHHhcc-CCeEEEEEech
Q 028227 174 AVQSSANLYEIS-GTFKTWNIIMD 196 (212)
Q Consensus 174 ~V~~~~~~~~L~-~g~vV~Ld~~~ 196 (212)
+.. .....+. .+.+|||+++.
T Consensus 73 -~~~-~~~~~~~~~d~~i~Ld~~~ 94 (183)
T PRK06217 73 -ALG-WGDPLEPLFDLVVFLTIPP 94 (183)
T ss_pred -HHH-HHHHHHhhCCEEEEEECCH
Confidence 222 1112333 78999999964
No 20
>PRK14532 adenylate kinase; Provisional
Probab=99.37 E-value=1.8e-12 Score=106.89 Aligned_cols=100 Identities=15% Similarity=0.097 Sum_probs=65.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-C----CchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~----~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa 169 (212)
+|+|+|+|||||||+|+.||+.+|+.++++|+++.+... + ..+.++++ .|+..+.+...+++..... .+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~~ 76 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLP----EAE 76 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHh----CcC
Confidence 699999999999999999999999999999999887531 1 23444454 4655555554555544332 233
Q ss_pred eCCceeech-----h---hH-Hhcc-----CCeEEEEEechhhh
Q 028227 170 AGNGAVQSS-----A---NL-YEIS-----GTFKTWNIIMDRRS 199 (212)
Q Consensus 170 ~GgG~V~~~-----~---~~-~~L~-----~g~vV~Ld~~~~~v 199 (212)
+++|++++. . .+ +++. -+.+|||+++.+.+
T Consensus 77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~ 120 (188)
T PRK14532 77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL 120 (188)
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence 455666542 1 11 1232 24799999986543
No 21
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.6e-12 Score=108.38 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=81.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH-----HHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEE
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~-----~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV 168 (212)
-.|+++|++||||||+|++|+++|+++|+|.|+++ +++..|.++. ++..+.|+...-..+.+.+.+....|+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vVl 89 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVVL 89 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEEE
Confidence 47899999999999999999999999999999994 4444334443 456788888888888888888788999
Q ss_pred EeCCceeechhhHHhccC------------C--eEEEEEechhhhhcccC
Q 028227 169 CAGNGAVQSSANLYEISG------------T--FKTWNIIMDRRSSRHGS 204 (212)
Q Consensus 169 a~GgG~V~~~~~~~~L~~------------g--~vV~Ld~~~~~v~R~~~ 204 (212)
+|+. +...+|++|++ . .+|||..+++.+..++.
T Consensus 90 ACSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~ 136 (191)
T KOG3354|consen 90 ACSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLK 136 (191)
T ss_pred EhHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHh
Confidence 9874 77788888873 1 47888887765544443
No 22
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.9e-13 Score=130.27 Aligned_cols=82 Identities=26% Similarity=0.189 Sum_probs=72.2
Q ss_pred cccccccCCCceeecccccCCCccccceec--cCCc---------c----hHHHHHHHHH------hcccCCcEEEEEcc
Q 028227 43 LQYSIISRKPRITTRSIADDTTSNTVTKVA--AEDP---------S----FAVKKKAADI------STELKGTSVFLVGM 101 (212)
Q Consensus 43 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~d~---------~----~~lk~~~~~~------~~~l~~~~I~LvG~ 101 (212)
++.-+..+++|.+||||+||.|+.||++.+ ++|. + .++|+|+.|+ .+..+|+.+.|+||
T Consensus 367 L~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GP 446 (906)
T KOG2004|consen 367 LKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGP 446 (906)
T ss_pred HhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCC
Confidence 455588999999999999999999999998 3333 2 5899999997 67778999999999
Q ss_pred CCCCHHHHHHHHHHHhCCcEeeh
Q 028227 102 NNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 102 ~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
||+|||++||.+|++||..|+..
T Consensus 447 PGVGKTSI~kSIA~ALnRkFfRf 469 (906)
T KOG2004|consen 447 PGVGKTSIAKSIARALNRKFFRF 469 (906)
T ss_pred CCCCcccHHHHHHHHhCCceEEE
Confidence 99999999999999999999864
No 23
>PRK08118 topology modulation protein; Reviewed
Probab=99.30 E-value=9.7e-12 Score=102.51 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=63.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
+.|+|+|+|||||||+|+.|++.+++++++.|.++++..+ .... . +...++++++...++||+....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w-~~~~-------~----~~~~~~~~~~~~~~~wVidG~~- 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW-EGVP-------K----EEQITVQNELVKEDEWIIDGNY- 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC-cCCC-------H----HHHHHHHHHHhcCCCEEEeCCc-
Confidence 4799999999999999999999999999999999875321 1111 1 1223345566666789885221
Q ss_pred eeechhhHHhcc-CCeEEEEEec-----hhhhhccc
Q 028227 174 AVQSSANLYEIS-GTFKTWNIIM-----DRRSSRHG 203 (212)
Q Consensus 174 ~V~~~~~~~~L~-~g~vV~Ld~~-----~~~v~R~~ 203 (212)
.... ...+. .+.+|||+++ .+.++|..
T Consensus 69 --~~~~-~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 69 --GGTM-DIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred --chHH-HHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 1111 12233 7999999997 35555543
No 24
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=5.3e-12 Score=104.04 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=66.3
Q ss_pred EccCCCCHHHHHHHHHHHhCCcEeehhHHH-----HHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 99 vG~~GsGKTTvak~LA~~lg~~~~d~D~l~-----~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
+|.+||||||+|+.||+++|++|+|.|+++ +++..|.++. ++..+.|+...-..+.......+..||+|+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~---DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS-- 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN---DDDRWPWLEALGDAAASLAQKNKHVVIACS-- 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC---cchhhHHHHHHHHHHHHhhcCCCceEEecH--
Confidence 599999999999999999999999999984 4444345543 233445554444444433333344788886
Q ss_pred eeechhhHHhccC----CeEEEEEechhhhh
Q 028227 174 AVQSSANLYEISG----TFKTWNIIMDRRSS 200 (212)
Q Consensus 174 ~V~~~~~~~~L~~----g~vV~Ld~~~~~v~ 200 (212)
.++..+|+.|+. -..|||+.+++.+.
T Consensus 76 -ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~ 105 (161)
T COG3265 76 -ALKRSYRDLLREANPGLRFVYLDGDFDLIL 105 (161)
T ss_pred -HHHHHHHHHHhccCCCeEEEEecCCHHHHH
Confidence 378889999982 25788888765433
No 25
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.29 E-value=1.9e-11 Score=98.40 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=66.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH-----H-hCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----A-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~-----~-~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa 169 (212)
|+|+|++||||||+++.|++.++++++|.|++... . .| ... .....+.+++..+..+...+......||+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~ 76 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IPL---NDDDRWPWLQNLNDASTAAAAKNKVGIIT 76 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CCC---ChhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 57999999999999999999999999999997432 1 22 221 12345567777766666666655556777
Q ss_pred eCCceeechhhHHhcc-C---CeEEEEEechh
Q 028227 170 AGNGAVQSSANLYEIS-G---TFKTWNIIMDR 197 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~-~---g~vV~Ld~~~~ 197 (212)
++ +....+++.++ . ..+|||+++.+
T Consensus 77 ~t---~~~~~~r~~~~~~~~~~~~i~l~~~~e 105 (163)
T TIGR01313 77 CS---ALKRHYRDILREAEPNLHFIYLSGDKD 105 (163)
T ss_pred ec---ccHHHHHHHHHhcCCCEEEEEEeCCHH
Confidence 75 24556666665 2 35799998754
No 26
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.27 E-value=3.4e-11 Score=98.45 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|++||||||+++.|++.+. +.++|.|.+.+.. + ..- +..............+.+.+...+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~-~-~~~---~~~~~~~~~~~~~~~l~~~l~~~g~~ 80 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL-G-HYG---YDKQSRIEMALKRAKLAKFLADQGMI 80 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc-C-CCC---CCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 578999999999999999999999886 7889999876532 2 110 11111111111112223334445668
Q ss_pred EEEeCCcee--echhhHHhccCCeEEEEEechhhhh
Q 028227 167 VVCAGNGAV--QSSANLYEISGTFKTWNIIMDRRSS 200 (212)
Q Consensus 167 VVa~GgG~V--~~~~~~~~L~~g~vV~Ld~~~~~v~ 200 (212)
||++|++.+ ....++..+...++|||+++.+...
T Consensus 81 VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~ 116 (176)
T PRK05541 81 VIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELI 116 (176)
T ss_pred EEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHH
Confidence 888876654 3344555555568999999764333
No 27
>PRK04182 cytidylate kinase; Provisional
Probab=99.25 E-value=5e-11 Score=96.19 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=65.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh---CCCchhhhhhhhchHHH---HHHHHHHHHHHh-cCCCEE
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA---GGESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRLV 167 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~---G~~si~ei~~~~Ge~~f---r~~E~~vL~~L~-~~~~~V 167 (212)
.|+|+|++||||||+|+.||+.+|++++|+|+++++.. | .+..++. +.++..+ +..+.. +..+. ..+++|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~V 78 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERG-MSLEEFN-KYAEEDPEIDKEIDRR-QLEIAEKEDNVV 78 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcC-CCHHHHH-HHhhcCchHHHHHHHH-HHHHHhcCCCEE
Confidence 68999999999999999999999999999988766543 4 5555544 2333322 233333 33444 455666
Q ss_pred EEeC-CceeechhhHHhccCCeEEEEEechh-hhhcccCC
Q 028227 168 VCAG-NGAVQSSANLYEISGTFKTWNIIMDR-RSSRHGSK 205 (212)
Q Consensus 168 Va~G-gG~V~~~~~~~~L~~g~vV~Ld~~~~-~v~R~~~~ 205 (212)
|... ++.+... ..+++|||+++.+ +++|...+
T Consensus 79 i~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r 112 (180)
T PRK04182 79 LEGRLAGWMAKD------YADLKIWLKAPLEVRAERIAER 112 (180)
T ss_pred EEEeecceEecC------CCCEEEEEECCHHHHHHHHHhc
Confidence 6421 1222210 1578999999864 55555443
No 28
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.21 E-value=8e-12 Score=103.63 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=68.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHH--------------
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLK-------------- 158 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~-------------- 158 (212)
+..|+|+||+||||||+++.|+..++..+++.|..+..... ....+.+...+++.++..|...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 56899999999999999999999988889998887664432 223344444455556554433222
Q ss_pred ---HHhcCCCEEEEeCCceeechhhHHhcc-CCeEEEEEechhhhh
Q 028227 159 ---QLSSMGRLVVCAGNGAVQSSANLYEIS-GTFKTWNIIMDRRSS 200 (212)
Q Consensus 159 ---~L~~~~~~VVa~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~~v~ 200 (212)
.....+..||+.|++.+. ...+..+. ...+|||+++.+.+.
T Consensus 81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~ 125 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILR 125 (186)
T ss_pred HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHH
Confidence 222345567776654433 33455554 567899999865433
No 29
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.21 E-value=8.4e-12 Score=114.36 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=67.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCC------cEeehhHHH-----HHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~------~~~d~D~l~-----~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~ 164 (212)
++|+|+|||||||+++.|++.+.. .++|.|+++ +...| +++++++ +.||+. +..+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~-----k~~R~~----i~~~le-- 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQW-----KQFRQE----LLKYLE-- 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHH-----HHHHHH----HHHHHH--
Confidence 579999999999999999988764 489999999 55556 6777655 667743 333332
Q ss_pred CEEEEeCCceeech----------hhHHhcc-CCeEEEEEechh
Q 028227 165 RLVVCAGNGAVQSS----------ANLYEIS-GTFKTWNIIMDR 197 (212)
Q Consensus 165 ~~VVa~GgG~V~~~----------~~~~~L~-~g~vV~Ld~~~~ 197 (212)
..|+++|||+++.+ .|+..|+ +|++|||+++.+
T Consensus 70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e 113 (340)
T TIGR03575 70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEA 113 (340)
T ss_pred HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHH
Confidence 45778899988743 4557776 899999999753
No 30
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=1.1e-10 Score=97.70 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=71.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhh--hchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRE--SDEKGYQQAETEVLKQLSSMGRLVVCA 170 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~--~Ge~~fr~~E~~vL~~L~~~~~~VVa~ 170 (212)
.|.|-|+|||||||+++.||+.+|++++.+..++.+++. ++++.++.+- .+.+.=.+.. +-...++.++++||.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD-~rq~e~a~~~nvVle- 79 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEID-RRQKELAKEGNVVLE- 79 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHH-HHHHHHHHcCCeEEh-
Confidence 578999999999999999999999999999999987752 3888775432 2222212222 233444446777773
Q ss_pred CCceeechhhHHhc-c--CCeEEEEEech-hhhhcccCCCC
Q 028227 171 GNGAVQSSANLYEI-S--GTFKTWNIIMD-RRSSRHGSKNG 207 (212)
Q Consensus 171 GgG~V~~~~~~~~L-~--~g~vV~Ld~~~-~~v~R~~~~~~ 207 (212)
| ..-.|+ + .++-|||++|. .|++|...+++
T Consensus 80 g-------rLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 80 G-------RLAGWIVREYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred h-------hhHHHHhccccceEEEEeCcHHHHHHHHHHhcC
Confidence 1 222233 2 78999999975 58888777653
No 31
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.18 E-value=1.6e-10 Score=94.70 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=35.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
+|+|+|+|||||||+|+.||+.+|+.+++.|+++++..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~ 38 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI 38 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH
Confidence 48999999999999999999999999999999988764
No 32
>PLN02674 adenylate kinase
Probab=99.18 E-value=2e-10 Score=101.02 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=74.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh------CCCchhhhhhhhchHHHHHHHHHHHHHHhcC---
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSM--- 163 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~------G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~--- 163 (212)
..+|+|+|+|||||+|+|+.||+.+|+.++++++++.+.. | ..+.+++. .|+....+....++.+....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g-~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD-KGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh-HHHHHHHH-cCCccCHHHHHHHHHHHHhCcCc
Confidence 5789999999999999999999999999999999998763 3 44556654 67777777777766655432
Q ss_pred -CCEEEEeCCceeechhhHH----hcc-----CCeEEEEEechhhhhcccCCC
Q 028227 164 -GRLVVCAGNGAVQSSANLY----EIS-----GTFKTWNIIMDRRSSRHGSKN 206 (212)
Q Consensus 164 -~~~VVa~GgG~V~~~~~~~----~L~-----~g~vV~Ld~~~~~v~R~~~~~ 206 (212)
.++|+. |.+-+...-+ .+. -+.+|+|+++.+.+.+++..+
T Consensus 109 ~~g~ilD---GfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 109 QKGFILD---GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR 158 (244)
T ss_pred CCcEEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence 334553 2222211111 221 367999999876555555444
No 33
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.17 E-value=9.9e-11 Score=92.90 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=66.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH-----HhCCCchhhhhhhhchHHHHHHHHHHHHHHh-cCCCEEEE
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVVC 169 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~-----~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~-~~~~~VVa 169 (212)
|+|+|+|||||||+|+.|++.+++.++|.|.+... ...+.... ....+.+++......+..+. ....+|+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~vVid 78 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLASAGEGVVVA 78 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 78999999999999999999999999999999864 22212211 12234555665555555553 44567776
Q ss_pred eCCceeechhhHHhccC------CeEEEEEechhhhhccc
Q 028227 170 AGNGAVQSSANLYEISG------TFKTWNIIMDRRSSRHG 203 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~~------g~vV~Ld~~~~~v~R~~ 203 (212)
++. .....++.++. ..+||++++.+.+.++.
T Consensus 79 ~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~ 115 (150)
T cd02021 79 CSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERL 115 (150)
T ss_pred ecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHH
Confidence 553 23444554441 36899999765444333
No 34
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.14 E-value=5.8e-11 Score=90.54 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
.|+|+|+|||||||+|+.||+.+|+++++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 4899999999999999999999999999999954
No 35
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.4e-11 Score=119.53 Aligned_cols=79 Identities=25% Similarity=0.177 Sum_probs=69.7
Q ss_pred ccccCCCceeecccccCCCccccceec--cCCcc-------------hHHHHHHHHH------hcccCCcEEEEEccCCC
Q 028227 46 SIISRKPRITTRSIADDTTSNTVTKVA--AEDPS-------------FAVKKKAADI------STELKGTSVFLVGMNNA 104 (212)
Q Consensus 46 ~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~d~~-------------~~lk~~~~~~------~~~l~~~~I~LvG~~Gs 104 (212)
-+..|+++.++|||+||....||++.+ .+|.+ ..+|+|+.|. .+.++|..+.|+||||+
T Consensus 282 m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGV 361 (782)
T COG0466 282 MSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGV 361 (782)
T ss_pred CCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCC
Confidence 367899999999999999999999998 44443 4789998885 77889999999999999
Q ss_pred CHHHHHHHHHHHhCCcEeeh
Q 028227 105 IKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 105 GKTTvak~LA~~lg~~~~d~ 124 (212)
|||++|+.+|+++|..|+..
T Consensus 362 GKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 362 GKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CchhHHHHHHHHhCCCEEEE
Confidence 99999999999999999854
No 36
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.11 E-value=4.5e-10 Score=95.12 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=35.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
+|+|+|+|||||||+|+.||+.+|++++++++++++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~ 39 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAV 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHH
Confidence 69999999999999999999999999999988887653
No 37
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.11 E-value=5.3e-10 Score=94.38 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=35.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
+|+|+|+|||||||+|+.||+.+|++++++++++++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~ 38 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEI 38 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhh
Confidence 38999999999999999999999999999999987654
No 38
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.09 E-value=6.3e-10 Score=96.68 Aligned_cols=104 Identities=8% Similarity=0.039 Sum_probs=63.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC-Cch----hhhhhhhch----HHHHHHHHHHHHHHh--
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESA----AKAFRESDE----KGYQQAETEVLKQLS-- 161 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~-~si----~ei~~~~Ge----~~fr~~E~~vL~~L~-- 161 (212)
+.+|+|+|+|||||||+|+.||+.+|++++++|+++++.... .++ .+++.+ |. +.....-.+.+.++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhccc
Confidence 567999999999999999999999999999999999876431 122 222222 31 222233333333321
Q ss_pred cCCCEEEEeCCceeechhhHHhc----cCCeEEEEEechhhhh
Q 028227 162 SMGRLVVCAGNGAVQSSANLYEI----SGTFKTWNIIMDRRSS 200 (212)
Q Consensus 162 ~~~~~VVa~GgG~V~~~~~~~~L----~~g~vV~Ld~~~~~v~ 200 (212)
...++|+. |.+-.......| +-..+|||+++...+.
T Consensus 85 ~~~g~iLD---GfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~ 124 (229)
T PTZ00088 85 CFKGFILD---GFPRNLKQCKELGKITNIDLFVNIYLPRNILI 124 (229)
T ss_pred cCceEEEe---cCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHH
Confidence 12456664 232222222222 2468999999864333
No 39
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.09 E-value=8.9e-11 Score=113.87 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC------cEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHH-HHHHhcCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV-LKQLSSMG 164 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~------~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~v-L~~L~~~~ 164 (212)
++..|+|+|+|||||||+|+.||+.++. .++|.|.+...+.|. ..|++.|.+. +..+....
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge------------~~f~~~er~~~~~~l~~~a 458 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSE------------LGFSKEDRDLNILRIGFVA 458 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCC------------CCCCHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999996 999999886654431 1222222211 11111111
Q ss_pred CEEEEeCCceeec---------hhhHHhcc-CC--eEEEEEechh
Q 028227 165 RLVVCAGNGAVQS---------SANLYEIS-GT--FKTWNIIMDR 197 (212)
Q Consensus 165 ~~VVa~GgG~V~~---------~~~~~~L~-~g--~vV~Ld~~~~ 197 (212)
..++++|++++++ ..++++++ .+ ++|||+++.+
T Consensus 459 ~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e 503 (568)
T PRK05537 459 SEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLE 503 (568)
T ss_pred HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHH
Confidence 2234444444444 46777776 34 5899999754
No 40
>PRK07261 topology modulation protein; Provisional
Probab=99.09 E-value=1.9e-10 Score=94.88 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=61.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
+.|+|+|++||||||+++.|++.+++++++.|.+.+.... . +...+.+.. .+..+..++.||+. |
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-~-------~~~~~~~~~----~~~~~~~~~~wIid---g 65 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-Q-------ERDDDDMIA----DISNFLLKHDWIID---G 65 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-c-------cCCHHHHHH----HHHHHHhCCCEEEc---C
Confidence 3699999999999999999999999999999998764211 1 112222222 22333345668884 3
Q ss_pred eeechhhHHhc-cCCeEEEEEec-----hhhhhccc
Q 028227 174 AVQSSANLYEI-SGTFKTWNIIM-----DRRSSRHG 203 (212)
Q Consensus 174 ~V~~~~~~~~L-~~g~vV~Ld~~-----~~~v~R~~ 203 (212)
..........+ ..+.+|||+++ .+.++|..
T Consensus 66 ~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 66 NYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred cchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHH
Confidence 33221212233 37899999986 35666654
No 41
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.08 E-value=6.6e-10 Score=90.42 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=35.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
...|+|+|+|||||||+++.||+.+|+.++++|+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~ 41 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAE 41 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 467899999999999999999999999999999887665
No 42
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.08 E-value=7.4e-10 Score=86.37 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=36.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
.|+++|+|||||||+++.|++.+++.+++.|.+.....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc
Confidence 378999999999999999999999999999999988865
No 43
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.07 E-value=1e-09 Score=89.63 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=62.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCc----hhhhhhhhchHHHHHHHHHHHHHHhc---CCCEE
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES----AAKAFRESDEKGYQQAETEVLKQLSS---MGRLV 167 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~s----i~ei~~~~Ge~~fr~~E~~vL~~L~~---~~~~V 167 (212)
|+|+|+|||||||+|+.||+++|+.++++++++++... +.. +.+++ ..|...-.+...++++.... ..++|
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 78999999999999999999999999999888775532 112 22222 22333323333444444332 23455
Q ss_pred EEeCCceeechhhHH----hc----cCCeEEEEEechh-hhhcccCC
Q 028227 168 VCAGNGAVQSSANLY----EI----SGTFKTWNIIMDR-RSSRHGSK 205 (212)
Q Consensus 168 Va~GgG~V~~~~~~~----~L----~~g~vV~Ld~~~~-~v~R~~~~ 205 (212)
|. |.+.+..... ++ .-+++|||+++.+ .++|...+
T Consensus 81 lD---g~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R 124 (183)
T TIGR01359 81 ID---GFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKR 124 (183)
T ss_pred Ee---CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcC
Confidence 53 2222222222 22 2357999999865 34444433
No 44
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.07 E-value=1.8e-09 Score=86.57 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=63.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhc-hHHHHHHHHHHHHHHh-cCCCEEEEe
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESD-EKGYQQAETEVLKQLS-SMGRLVVCA 170 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~G-e~~fr~~E~~vL~~L~-~~~~~VVa~ 170 (212)
.|.|+|++||||||+|+.||+.+|++++|.|+++++... +.+..++..... .......-.+.+..+. ..+++||.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~- 80 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE- 80 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE-
Confidence 589999999999999999999999999999988776642 133332221110 0111222222333343 45667774
Q ss_pred CCceeechhhHHhcc--CCeEEEEEechh-hhhcccCCC
Q 028227 171 GNGAVQSSANLYEIS--GTFKTWNIIMDR-RSSRHGSKN 206 (212)
Q Consensus 171 GgG~V~~~~~~~~L~--~g~vV~Ld~~~~-~v~R~~~~~ 206 (212)
|.+. .+ .++ .+++|||+++.+ +++|...++
T Consensus 81 g~~~-----~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 81 SRLA-----GW-IVREYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred eccc-----ce-eecCCcCEEEEEECCHHHHHHHHHHcc
Confidence 3211 11 112 468999999864 556655443
No 45
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.07 E-value=7.8e-10 Score=86.28 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=61.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCcee
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAV 175 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~V 175 (212)
|+|+|++||||||+|+.||+.+|++++|.|.+..+..+ ...... .....+++...+.+.++...++|||. |-.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~Vid-g~~-- 74 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEV---AAIPEVRKALDERQRELAKKPGIVLE-GRD-- 74 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHh---cccHhHHHHHHHHHHHHhhCCCEEEE-eee--
Confidence 78999999999999999999999999999965443322 000010 01123444445556667666778884 211
Q ss_pred echhhHHhcc-CCeEEEEEechh-hhhcccC
Q 028227 176 QSSANLYEIS-GTFKTWNIIMDR-RSSRHGS 204 (212)
Q Consensus 176 ~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~~ 204 (212)
. .+.++. .+++|||+.+.+ +++|...
T Consensus 75 ~---~~~~~~~~~~~i~l~~~~~~r~~R~~~ 102 (147)
T cd02020 75 I---GTVVFPDADLKIFLTASPEVRAKRRAK 102 (147)
T ss_pred e---eeEEcCCCCEEEEEECCHHHHHHHHHH
Confidence 1 111123 579999999753 4444433
No 46
>PRK14531 adenylate kinase; Provisional
Probab=99.06 E-value=1.3e-09 Score=90.20 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=34.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
.+|+|+|+|||||||+++.||+.+|++++++++++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 57999999999999999999999999999998777654
No 47
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.04 E-value=1.3e-09 Score=95.82 Aligned_cols=107 Identities=10% Similarity=-0.021 Sum_probs=62.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHhCCCchh-hhhhhhchHHHHHHHHHHHHHHhc-CCCEEEEe
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA 170 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~~~G~~si~-ei~~~~Ge~~fr~~E~~vL~~L~~-~~~~VVa~ 170 (212)
+.|+++|+|||||||+|+.|++.+ ++.+++.|.+.+...+..... ..+...++...++.....++.... ...+||++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~ 82 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD 82 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 578999999999999999999999 899999999887765421111 111222333333444444444433 34466654
Q ss_pred CCceeechhhHH-hcc-CC---eEEEEEechhhhh
Q 028227 171 GNGAVQSSANLY-EIS-GT---FKTWNIIMDRRSS 200 (212)
Q Consensus 171 GgG~V~~~~~~~-~L~-~g---~vV~Ld~~~~~v~ 200 (212)
..........+. +++ .+ .+|||+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~ 117 (300)
T PHA02530 83 TNLNPERRRKWKELAKELGAEFEEKVFDVPVEELV 117 (300)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHH
Confidence 432211122222 222 22 2688888754333
No 48
>PRK06547 hypothetical protein; Provisional
Probab=99.01 E-value=2.2e-10 Score=95.27 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=67.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCc-----hhhhhhhhchHHHHHHH--HHHHHH--Hhc
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAE--TEVLKQ--LSS 162 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~s-----i~ei~~~~Ge~~fr~~E--~~vL~~--L~~ 162 (212)
....|.|.|++||||||+++.||+.+++++++.|+++....+ .+ +.+.+.+.|+..++... ...... ...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~ 92 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVE 92 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeC
Confidence 356788889999999999999999999999999998864332 21 11222222322211100 000000 111
Q ss_pred CCCEEEEeCCceeechhhHHhcc-CC--eEEEEEech-hhhhcccCC
Q 028227 163 MGRLVVCAGNGAVQSSANLYEIS-GT--FKTWNIIMD-RRSSRHGSK 205 (212)
Q Consensus 163 ~~~~VVa~GgG~V~~~~~~~~L~-~g--~vV~Ld~~~-~~v~R~~~~ 205 (212)
.+..||..|.++. ...+++++. ++ +.|||+++. .+.+|...+
T Consensus 93 ~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 93 PGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 2456777777765 456677774 44 789999975 355554444
No 49
>PRK01184 hypothetical protein; Provisional
Probab=99.00 E-value=3.1e-09 Score=87.28 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=33.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
..|+|+|+|||||||+++ +++.+|++++++|+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~ 39 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEV 39 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHH
Confidence 378999999999999998 78899999999988776653
No 50
>PRK06762 hypothetical protein; Provisional
Probab=98.97 E-value=3.5e-09 Score=85.44 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=36.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l--g~~~~d~D~l~~~~~G 133 (212)
++.|+|+|+|||||||+|+.|++.+ ++.+++.|.+.....+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~ 44 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLR 44 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcc
Confidence 4689999999999999999999998 6788999998876654
No 51
>PRK02496 adk adenylate kinase; Provisional
Probab=98.95 E-value=6.1e-09 Score=85.68 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=35.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
.+|+|+|+|||||||+++.||+.+|+++++.|+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~ 40 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAI 40 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHH
Confidence 468999999999999999999999999999999987654
No 52
>PRK13975 thymidylate kinase; Provisional
Probab=98.94 E-value=8.2e-10 Score=91.09 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=57.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhHHHH----HHhCC-----CchhhhhhhhchHHHHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF----EAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS 161 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~l~~----~~~G~-----~si~ei~~~~Ge~~fr~~E~~vL~~L~ 161 (212)
+..|+|.|++||||||+++.||+.++ +.+.+.|..+. +.... .....+|...+++.|++.|.. +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence 36799999999999999999999999 44556554432 22211 112234555555555543332 22
Q ss_pred cCCCEEEEe-----------CCceeec---hhhHHhccCCeEEEEEechhh
Q 028227 162 SMGRLVVCA-----------GNGAVQS---SANLYEISGTFKTWNIIMDRR 198 (212)
Q Consensus 162 ~~~~~VVa~-----------GgG~V~~---~~~~~~L~~g~vV~Ld~~~~~ 198 (212)
. ..||+- ++|.... ..+...++.+.+|||+++.+.
T Consensus 78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~ 126 (196)
T PRK13975 78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEE 126 (196)
T ss_pred -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHH
Confidence 2 345542 2232211 112112346899999997643
No 53
>PRK14527 adenylate kinase; Provisional
Probab=98.94 E-value=7.2e-09 Score=86.12 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
+++.|+++|+|||||||+++.||+.+|+.+++.|+++.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~ 45 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHV 45 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 46789999999999999999999999999999999987654
No 54
>PRK13808 adenylate kinase; Provisional
Probab=98.94 E-value=5.3e-09 Score=95.83 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=35.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+|+|+|+|||||||+++.||+.+|+.+++.|+++.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~ 38 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAA 38 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHH
Confidence 6899999999999999999999999999999998765
No 55
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.93 E-value=1.6e-10 Score=113.49 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchh-hhhhhhchHHHHHHHHHHHHHHhc-CCCEEEE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVC 169 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~-ei~~~~Ge~~fr~~E~~vL~~L~~-~~~~VVa 169 (212)
....|+++|+||+||||+|+.|++.++|.++|+|.+.....+ ..+. +.+...++..++..|.+++..+.. ...+|++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~ 292 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICK 292 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999998888776555 3333 445556777888888888887775 4567888
Q ss_pred eCCceeechhhHHhcc----------CC-----eEEEEEe
Q 028227 170 AGNGAVQSSANLYEIS----------GT-----FKTWNII 194 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~----------~g-----~vV~Ld~ 194 (212)
+|+++|++..|+..++ .+ .+|||++
T Consensus 293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~ 332 (664)
T PTZ00322 293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV 332 (664)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE
Confidence 8888898886655443 12 5999998
No 56
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.93 E-value=9.1e-09 Score=84.00 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|+|||||||+++.|+..+ ++.++|.|.+.+....+... ..+..+.+++... .+.+.+...+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~---~~~~r~~~~~~~~-~~a~~~~~~g~- 77 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGF---SKEDRDTNIRRIG-FVANLLTRHGV- 77 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCC---ChhhHHHHHHHHH-HHHHHHHhCCC-
Confidence 47899999999999999999999988 36789999987655421111 1112233444332 22233333333
Q ss_pred EEEeCCceeechhhHHhcc----CCeEEEEEechhh
Q 028227 167 VVCAGNGAVQSSANLYEIS----GTFKTWNIIMDRR 198 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~L~----~g~vV~Ld~~~~~ 198 (212)
+|.+++... ....++.++ ...+|||+++.+.
T Consensus 78 ~vi~~~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~ 112 (175)
T PRK00889 78 IVLVSAISP-YRETREEVRANIGNFLEVFVDAPLEV 112 (175)
T ss_pred EEEEecCCC-CHHHHHHHHhhcCCeEEEEEcCCHHH
Confidence 443333322 334455443 4579999997654
No 57
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.92 E-value=8.9e-09 Score=86.28 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|++||||||+++.|+..+ +..++|.|.+.+...+. +. +..+...+.++... .+...+...+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~--~~-~~~~~~~~~~~~l~-~~a~~~~~~G~~ 98 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD--LG-FSDADRKENIRRVG-EVAKLMVDAGLV 98 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc--CC-cCcccHHHHHHHHH-HHHHHHhhCCCE
Confidence 57899999999999999999999986 46889999987654331 11 11111223343322 233444445555
Q ss_pred EEEeCCce--eechhhHHhcc-CCe-EEEEEechh
Q 028227 167 VVCAGNGA--VQSSANLYEIS-GTF-KTWNIIMDR 197 (212)
Q Consensus 167 VVa~GgG~--V~~~~~~~~L~-~g~-vV~Ld~~~~ 197 (212)
||+...+. -.....+++++ .++ +|||+++.+
T Consensus 99 VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e 133 (198)
T PRK03846 99 VLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLA 133 (198)
T ss_pred EEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHH
Confidence 55422110 11223444554 455 799999864
No 58
>PRK14528 adenylate kinase; Provisional
Probab=98.91 E-value=1.2e-08 Score=85.10 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=36.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
++|+|+|+|||||||+++.||+.+|++++++|+++.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence 469999999999999999999999999999999987654
No 59
>PLN02200 adenylate kinase family protein
Probab=98.89 E-value=1.7e-08 Score=87.71 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=36.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
+..|+|+|+|||||||+|+.||+.+|+.++++++++.+..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i 82 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREI 82 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHH
Confidence 4689999999999999999999999999999988887654
No 60
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.88 E-value=9.8e-09 Score=88.76 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=62.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~ 170 (212)
|+|+|+|||||||+|+.||+.++ +.+++.|.+.+.... ....++..+++.+..+++.....+.+||..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D 74 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEFIRDSTLYLIKTALKNKYSVIVD 74 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 78999999999999999999873 456677776554311 112345666776667777777666677766
Q ss_pred CCceeechhhHHh---cc-C---CeEEEEEechh-hhhcc
Q 028227 171 GNGAVQSSANLYE---IS-G---TFKTWNIIMDR-RSSRH 202 (212)
Q Consensus 171 GgG~V~~~~~~~~---L~-~---g~vV~Ld~~~~-~v~R~ 202 (212)
++. .....-.++ .+ . ..+||++++.+ ..+|.
T Consensus 75 ~~~-~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn 113 (249)
T TIGR03574 75 DTN-YYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRN 113 (249)
T ss_pred ccc-hHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHH
Confidence 543 222211222 22 2 36899999754 33443
No 61
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.87 E-value=9.3e-09 Score=85.03 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=64.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
+|..|+|+|.+||||||+|+.|.++| ...++|.|.+...+. .++. |...+.......-.++.+.|...+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~dl~--fs~~dR~e~~rr~~~~A~ll~~~G~i 76 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--ADLG--FSKEDREENIRRIAEVAKLLADQGII 76 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--TT----SSHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--CCCC--CCHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 46789999999999999999999887 467899999876432 2221 22223222223335566667777777
Q ss_pred EEEeCCceeechhhHHhcc----C--CeEEEEEechh-hhhcc
Q 028227 167 VVCAGNGAVQSSANLYEIS----G--TFKTWNIIMDR-RSSRH 202 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~L~----~--g~vV~Ld~~~~-~v~R~ 202 (212)
||++-- ......+++.+ . -+.|||+++.+ ..+|.
T Consensus 77 vIva~i--sp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 77 VIVAFI--SPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred EEEeec--cCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 775422 22344444443 3 47899999754 44554
No 62
>PRK14526 adenylate kinase; Provisional
Probab=98.85 E-value=2e-08 Score=86.22 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=34.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+|+|+|+|||||||+++.||+.+++.++++++++.+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~ 38 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFREN 38 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHh
Confidence 5899999999999999999999999999999998765
No 63
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.85 E-value=3.2e-08 Score=82.30 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=62.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH------HhCCCchhhhhhhhchHHHH-HHHHHHHHHHhc-
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQ-QAETEVLKQLSS- 162 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~------~~G~~si~ei~~~~Ge~~fr-~~E~~vL~~L~~- 162 (212)
+.|..++|+|++||||||+++.|+..++..++|.|.+... ..| ... .+.....|. .....++..+..
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~~----~~~~~~~~~~~~~~~~~~~~~~~ 75 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IPL----TDEDRLPWLERLNDASYSLYKKN 75 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CCC----CcccchHHHHHHHHHHHHHHhcC
Confidence 3578899999999999999999999999999999986321 122 111 111111233 333333222221
Q ss_pred CCCEEEEeCCceeechhhHHhcc-C---CeEEEEEechhhhhcc
Q 028227 163 MGRLVVCAGNGAVQSSANLYEIS-G---TFKTWNIIMDRRSSRH 202 (212)
Q Consensus 163 ~~~~VVa~GgG~V~~~~~~~~L~-~---g~vV~Ld~~~~~v~R~ 202 (212)
.+++|+ |+ .+....++.++ . -..|||+++.+.+.++
T Consensus 76 ~~g~iv-~s---~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~R 115 (176)
T PRK09825 76 ETGFIV-CS---SLKKQYRDILRKSSPNVHFLWLDGDYETILAR 115 (176)
T ss_pred CCEEEE-EE---ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHH
Confidence 244555 43 24556677666 2 2689999876544333
No 64
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.84 E-value=9.7e-09 Score=84.13 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=58.7
Q ss_pred EccCCCCHHHHHHHHHHHhCCcEeehhHHHH------HHhCCCchhhhhhhhch-HHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF------EAAGGESAAKAFRESDE-KGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 99 vG~~GsGKTTvak~LA~~lg~~~~d~D~l~~------~~~G~~si~ei~~~~Ge-~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
+|++||||||+++.|+..+|..++|.|.+.. ...| .. +.+.+. .+....+..++..+...+..||.|+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s 75 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EP----LNDDDRKPWLQALNDAAFAMQRTNKVSLIVCS 75 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CC----CChhhHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5999999999999999999999999998632 1122 22 222222 3334444444443433344455443
Q ss_pred CceeechhhHHhcc-C---CeEEEEEechhhhhccc
Q 028227 172 NGAVQSSANLYEIS-G---TFKTWNIIMDRRSSRHG 203 (212)
Q Consensus 172 gG~V~~~~~~~~L~-~---g~vV~Ld~~~~~v~R~~ 203 (212)
. .....++.++ . -..|||+++.+.++++.
T Consensus 76 ~---~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl 108 (163)
T PRK11545 76 A---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRL 108 (163)
T ss_pred c---chHHHHHHHHccCCCEEEEEEECCHHHHHHHH
Confidence 2 3455666665 2 36799999765444333
No 65
>PLN02459 probable adenylate kinase
Probab=98.82 E-value=3.2e-08 Score=87.98 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=35.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
.+|+|+|+|||||+|+|+.||+.+|+.++++++++.+..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei 68 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEI 68 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHH
Confidence 579999999999999999999999999999999987653
No 66
>PLN02165 adenylate isopentenyltransferase
Probab=98.79 E-value=2e-08 Score=92.10 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=63.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--------------HHHHhCCCc---hhhhhhhhch---HHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRESDE---KGYQ 150 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--------------~~~~~G~~s---i~ei~~~~Ge---~~fr 150 (212)
.++..|+|+||+|||||+++..||+.+++.++++|.+ .++..| .. +..+....+. ..|+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHHHH
Confidence 3577899999999999999999999999999999998 455544 22 2222222223 6788
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCce
Q 028227 151 QAETEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 151 ~~E~~vL~~L~~~~~~VVa~GgG~ 174 (212)
+.+.++++++...+..+|.+||+.
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTg 143 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSN 143 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChH
Confidence 888888888887788888888754
No 67
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.79 E-value=3.4e-08 Score=81.03 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~ 131 (212)
+++.|+|+|+|||||||+++.|++.++.+++ +.|.++...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~ 42 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL 42 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhc
Confidence 3678999999999999999999999876655 788887643
No 68
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.79 E-value=7.4e-08 Score=82.93 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=34.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
..|.|.|++||||||+++.||+.+|++++|.|.++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 47999999999999999999999999999999886543
No 69
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.78 E-value=1.6e-08 Score=82.55 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..|+|+|++||||||+++.|+..++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 357899999999999999999998753
No 70
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.77 E-value=2.1e-08 Score=84.18 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=35.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
..|.|+|++||||||+++.|++ +|++++|+|.+.++.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 40 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVV 40 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHh
Confidence 4799999999999999999998 9999999999998875
No 71
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.77 E-value=2.6e-08 Score=79.56 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=32.7
Q ss_pred EEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 98 LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
|+|+|||||+|+|+.||+.+|+.+++.++++++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHH
Confidence 68999999999999999999999999999988664
No 72
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.76 E-value=5.4e-09 Score=104.91 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=63.5
Q ss_pred cccCCCceeecccccCCCccccceecc--CCcc-------------hHHHHHHHHH------hcccCCcEEEEEccCCCC
Q 028227 47 IISRKPRITTRSIADDTTSNTVTKVAA--EDPS-------------FAVKKKAADI------STELKGTSVFLVGMNNAI 105 (212)
Q Consensus 47 ~~~~~~~~~t~~~~~~~~~~~~~~~~~--~d~~-------------~~lk~~~~~~------~~~l~~~~I~LvG~~GsG 105 (212)
...||+|.++|+|+||..+.||++.+. .|.. ..+|+++.++ .+..++..++|+||||+|
T Consensus 282 ~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~G 361 (784)
T PRK10787 282 SPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVG 361 (784)
T ss_pred CCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCC
Confidence 567899999999999999999999883 3332 3677777764 233567899999999999
Q ss_pred HHHHHHHHHHHhCCcEee
Q 028227 106 KTHLGKFLADALRYYYFD 123 (212)
Q Consensus 106 KTTvak~LA~~lg~~~~d 123 (212)
|||+++.+|+.++.+|+.
T Consensus 362 KTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 362 KTSLGQSIAKATGRKYVR 379 (784)
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999998863
No 73
>PRK04040 adenylate kinase; Provisional
Probab=98.74 E-value=1.6e-07 Score=79.09 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=35.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAA 132 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l--g~~~~d~D~l~~~~~ 132 (212)
++.|+|+|+|||||||+++.|++.+ ++.+++.|+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a 43 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA 43 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence 4689999999999999999999999 899999999976543
No 74
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.74 E-value=3.7e-08 Score=81.40 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=34.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
|.|+|++||||||+++.|++ +|++++|+|.+.++.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 38 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence 78999999999999999999 99999999999887753
No 75
>PRK14529 adenylate kinase; Provisional
Probab=98.74 E-value=5.5e-08 Score=84.49 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=62.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCc----hhhhhhhhchHHHHHHHHHHHH-HHhc--CCCE
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES----AAKAFRESDEKGYQQAETEVLK-QLSS--MGRL 166 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~s----i~ei~~~~Ge~~fr~~E~~vL~-~L~~--~~~~ 166 (212)
+|+|+|+|||||||+++.||+.+++++++..+++.+... +.. +.+++ +.|.....+.-..++. .|.. ..++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCcE
Confidence 689999999999999999999999999999888876542 122 22333 2343333333333333 3322 2456
Q ss_pred EEEeCCceeechhhHHh----c-----cCCeEEEEEechhhhh
Q 028227 167 VVCAGNGAVQSSANLYE----I-----SGTFKTWNIIMDRRSS 200 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~----L-----~~g~vV~Ld~~~~~v~ 200 (212)
|+. |.+-+...-+. + .-+.+|+|+++.+.+.
T Consensus 81 iLD---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~ 120 (223)
T PRK14529 81 LLD---GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAK 120 (223)
T ss_pred EEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHH
Confidence 663 44333222222 2 1368999999865443
No 76
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.73 E-value=5.3e-08 Score=83.49 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=46.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCC-chhhhhhhhchHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDEKGY 149 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~-si~ei~~~~Ge~~f 149 (212)
+..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+... -..++++..|++.+
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~ 63 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIV 63 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhc
Confidence 4579999999999999999999999999999999999886521 23456666666544
No 77
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.70 E-value=7.3e-08 Score=79.91 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=35.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
.|.|+|.+||||||+++.|++..|++++|+|.+.++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~ 39 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVE 39 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHh
Confidence 378999999999999999999877999999999887653
No 78
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.67 E-value=2.2e-08 Score=93.18 Aligned_cols=52 Identities=25% Similarity=0.176 Sum_probs=42.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhchH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK 147 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge~ 147 (212)
.|.|+|++||||||+++.|++ +|++++|+|.+.++.+. .....++++..|+.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~ 56 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDD 56 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChH
Confidence 699999999999999999998 89999999999998763 12335666666665
No 79
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.66 E-value=2.4e-07 Score=79.88 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=36.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~ 130 (212)
|++..|.|.|++||||||+|+.||+.+|++|+|.|.++..
T Consensus 2 ~~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 2 MKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 3457899999999999999999999999999999998654
No 80
>PRK08233 hypothetical protein; Provisional
Probab=98.64 E-value=7.5e-08 Score=77.92 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-~~~~d~D~l 127 (212)
++..|+|.|++||||||+|+.||++++ ...+..|.+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 457889999999999999999999996 444444444
No 81
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.62 E-value=2.2e-07 Score=75.02 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEE-E
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV-C 169 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV-a 169 (212)
|+|+|.|||||||+++.|++.+ | +.++|.|.+...+.+... +..+...+.++... ...+.+..++..|| +
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~---~~~~~~~~~~~~~~-~~a~~l~~~G~~VIid 77 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLG---FSREDREENIRRIA-EVAKLLADAGLIVIAA 77 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccC---CCcchHHHHHHHHH-HHHHHHHhCCCEEEEc
Confidence 7899999999999999999998 5 456788988765433111 11111223333322 23334444444444 3
Q ss_pred eCCceeechhhHHhcc------CCeEEEEEechhhhhc
Q 028227 170 AGNGAVQSSANLYEIS------GTFKTWNIIMDRRSSR 201 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~------~g~vV~Ld~~~~~v~R 201 (212)
+.. .....+..++ .-.+||++++.+...+
T Consensus 78 ~~~---~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~ 112 (149)
T cd02027 78 FIS---PYREDREAARKIIGGGDFLEVFVDTPLEVCEQ 112 (149)
T ss_pred cCC---CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHH
Confidence 322 2333333322 2467999998653333
No 82
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.61 E-value=2.1e-07 Score=79.14 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=64.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|.+||||||+|.+|+++| ...++|.|.+.+.+. .++. |.+++...--..-.++.+.|...+-+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~--~dLg--Fs~edR~eniRRvaevAkll~daG~i 97 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN--RDLG--FSREDRIENIRRVAEVAKLLADAGLI 97 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc--CCCC--CChHHHHHHHHHHHHHHHHHHHCCeE
Confidence 46899999999999999999999876 357789999988553 1221 33333222222335566666655545
Q ss_pred EEEeCCceee---chhhHHhccC--CeEEEEEechh-hhhcc
Q 028227 167 VVCAGNGAVQ---SSANLYEISG--TFKTWNIIMDR-RSSRH 202 (212)
Q Consensus 167 VVa~GgG~V~---~~~~~~~L~~--g~vV~Ld~~~~-~v~R~ 202 (212)
||+. -=.+. +...++.+.. -+-||+++|.+ ..+|+
T Consensus 98 viva-~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 98 VIVA-FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred EEEE-eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence 5532 10111 2233445543 46799999865 44443
No 83
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.59 E-value=6e-08 Score=80.66 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~ 130 (212)
...+|+++|-||+||||+|..||+.+|++|++..+++++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkE 44 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKE 44 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhh
Confidence 357899999999999999999999999999999999886
No 84
>PLN02422 dephospho-CoA kinase
Probab=98.59 E-value=2.8e-07 Score=80.62 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=40.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CC-chhhhhhhhchHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE-SAAKAFRESDEKG 148 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~-si~ei~~~~Ge~~ 148 (212)
.|.|+|.+||||||+++.|+ .+|++++|+|.+.++.+. +. -..++.+.+|++.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~i 57 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDI 57 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHh
Confidence 68999999999999999999 589999999999887753 11 1234555555443
No 85
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.59 E-value=6e-08 Score=81.35 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=35.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
++|+|+|+||+||||+|+.||+.++++++|+|++++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 378999999999999999999999999999999988654
No 86
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.58 E-value=5.1e-07 Score=74.34 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|++||||||+++.|+..+ +..++|.|.+...+.++ .. +-.+.....++.. ..+...+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~--~~-~~~~~~~~~~~~~-~~~~~~~~~~G~~ 92 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD--LG-FSEEDRKENIRRI-GEVAKLFVRNGII 92 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccc--cC-CCHHHHHHHHHHH-HHHHHHHHcCCCE
Confidence 47899999999999999999999887 35788999887655431 11 1112223344332 2234445555666
Q ss_pred EEEeCCceeechhhHHhcc----C--CeEEEEEechhh
Q 028227 167 VVCAGNGAVQSSANLYEIS----G--TFKTWNIIMDRR 198 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~L~----~--g~vV~Ld~~~~~ 198 (212)
||... .......++.++ . .++|||+++.+.
T Consensus 93 VI~d~--~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~ 128 (184)
T TIGR00455 93 VITSF--ISPYRADRQMVRELIEKGEFIEVFVDCPLEV 128 (184)
T ss_pred EEEec--CCCCHHHHHHHHHhCcCCCeEEEEEeCCHHH
Confidence 66432 122233344442 2 367999997643
No 87
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.57 E-value=5.5e-07 Score=76.33 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=39.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhch
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDE 146 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge 146 (212)
.|.|+|.+||||||+++.|++ +|++++|+|.+..+.+. .....++.+..|+
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~ 55 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGD 55 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCc
Confidence 689999999999999999997 89999999998776643 1223344444443
No 88
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.56 E-value=4.7e-08 Score=97.79 Aligned_cols=78 Identities=28% Similarity=0.208 Sum_probs=60.9
Q ss_pred cccCCCceeecccccCCCccccceecc--CCcc-------------hHHHHHHHHH------hcccCCcEEEEEccCCCC
Q 028227 47 IISRKPRITTRSIADDTTSNTVTKVAA--EDPS-------------FAVKKKAADI------STELKGTSVFLVGMNNAI 105 (212)
Q Consensus 47 ~~~~~~~~~t~~~~~~~~~~~~~~~~~--~d~~-------------~~lk~~~~~~------~~~l~~~~I~LvG~~GsG 105 (212)
..+|++|.++|+|.||.+..||.+... .|.. ..+|+++.++ .+..++..++|+||||||
T Consensus 280 ~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~G 359 (775)
T TIGR00763 280 EPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVG 359 (775)
T ss_pred CCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCC
Confidence 567899999999999999999988763 2221 2455555552 334466789999999999
Q ss_pred HHHHHHHHHHHhCCcEeeh
Q 028227 106 KTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 106 KTTvak~LA~~lg~~~~d~ 124 (212)
||++|+.||+.++.+|+..
T Consensus 360 KT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 360 KTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 9999999999999888744
No 89
>PRK08356 hypothetical protein; Provisional
Probab=98.50 E-value=7.6e-07 Score=74.41 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=29.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
..|+|+|+|||||||+++.|++ +|++++...+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~ 39 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPL 39 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcc
Confidence 5789999999999999999964 899999888643
No 90
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.49 E-value=2.4e-07 Score=78.18 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=36.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
..|.|+|++||||||+++.|++.+|++++|+|.+.++.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence 368999999999999999999988999999999988765
No 91
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.45 E-value=2.6e-07 Score=87.31 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=47.3
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH-HH--HHhCCCchhhhhhhhchHHHH
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VF--EAAGGESAAKAFRESDEKGYQ 150 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l-~~--~~~G~~si~ei~~~~Ge~~fr 150 (212)
+..+.+|+|+||||||||++|+.||+.++.+|++.|.. +. ...| .+..++++...+..|+
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK 106 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999954 33 2344 5666777766666654
No 92
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.44 E-value=1.4e-06 Score=73.82 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=32.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
|.|+|++||||||+++.|++ +|++++|+|.+.++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~ 37 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYT 37 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHH
Confidence 68999999999999999976 7999999999988775
No 93
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.42 E-value=3.3e-06 Score=71.76 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=34.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
..|.|+|.+||||||+++.|++ +|++++|+|.+.++..
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~ 43 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQ 43 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHc
Confidence 5688999999999999999997 8999999998877664
No 94
>PLN02842 nucleotide kinase
Probab=98.41 E-value=8.2e-07 Score=85.44 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=32.0
Q ss_pred EEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 97 ~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+|+|+|||||||+++.||+.+++.++++++++...
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~e 35 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAE 35 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHH
Confidence 37899999999999999999999999999988654
No 95
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.40 E-value=1.3e-06 Score=73.85 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=34.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+.|.|+|.||+||||+++.|+ .+|+.++++.+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 368999999999999999999 9999999999988864
No 96
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.39 E-value=1.1e-06 Score=73.15 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=30.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE 130 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~~ 130 (212)
|.|+|++||||||+++.|+..+ ...+++.|+++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 7899999999999999999987 4788999987743
No 97
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.36 E-value=3.1e-06 Score=74.50 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=36.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
.|.|+|..||||||+++.|++.+|++++|+|.+.++.+.
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~ 41 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA 41 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence 689999999999999999999899999999999887753
No 98
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.36 E-value=3.8e-06 Score=71.47 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe-ehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~-d~D~l~~~~ 131 (212)
.+..|++.|+||+||||+++.||+.+|+.++ .+|.+.+.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~ 42 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFL 42 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHH
Confidence 4678999999999999999999999999765 555554443
No 99
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.36 E-value=9.2e-07 Score=85.26 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=37.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
++..|.|.|++||||||+++.||+.+|+.++|.|.++...
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 5678999999999999999999999999999999998764
No 100
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.34 E-value=4.9e-07 Score=68.42 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=21.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l 117 (212)
|+|.|++||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 101
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.34 E-value=2.1e-06 Score=84.11 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=63.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+++|+|||||||+|+.|++.+ ++.++|.|.+.....++.. +-.+..+.+++.. .++...+...+..
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l-~~~a~~~~~~G~~ 534 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRV-AEVARLMADAGLI 534 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence 57899999999999999999999997 4688999998875433111 1112234455544 2233333344444
Q ss_pred EEEeCCceeechhhHHhcc-----CC-eEEEEEechhhhhc
Q 028227 167 VVCAGNGAVQSSANLYEIS-----GT-FKTWNIIMDRRSSR 201 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~L~-----~g-~vV~Ld~~~~~v~R 201 (212)
||+. . .......++.++ .. ++|||+++.+.+.+
T Consensus 535 Vivd-a-~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~ 573 (632)
T PRK05506 535 VLVS-F-ISPFREERELARALHGEGEFVEVFVDTPLEVCEA 573 (632)
T ss_pred EEEE-C-CCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHh
Confidence 4432 2 122334444443 23 78999997654433
No 102
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.6e-06 Score=81.42 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=74.1
Q ss_pred eccCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhc-----
Q 028227 71 VAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESD----- 145 (212)
Q Consensus 71 ~~~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~G----- 145 (212)
-.=+++++++++-++. +.+ .+.+|+||||+||||+|+.||...++.|.-...... |..++.+++++..
T Consensus 30 ~HLlg~~~~lrr~v~~--~~l--~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~---gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 30 EHLLGEGKPLRRAVEA--GHL--HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS---GVKDLREIIEEARKNRLL 102 (436)
T ss_pred HhhhCCCchHHHHHhc--CCC--ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc---cHHHHHHHHHHHHHHHhc
Confidence 3456778888877776 665 789999999999999999999999999997776643 2123333333321
Q ss_pred ----------hHHHHHHHHHHHHHHhcCCCEEEEeCCce--eechhhHHhccCCeEEEEEe
Q 028227 146 ----------EKGYQQAETEVLKQLSSMGRLVVCAGNGA--VQSSANLYEISGTFKTWNII 194 (212)
Q Consensus 146 ----------e~~fr~~E~~vL~~L~~~~~~VVa~GgG~--V~~~~~~~~L~~g~vV~Ld~ 194 (212)
-..|....+..+--..+ ++.|+-.|..+ +...-|-.++..+.|+.|+-
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lLp~vE-~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALLPHVE-NGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhhhhhc-CCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 13444555555555554 34455444321 22233445666777888875
No 103
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.31 E-value=2.5e-06 Score=71.60 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~ 129 (212)
++..|.|+|++||||||+++.|++.+ .+.+++.|.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 46789999999999999999999998 356789998765
No 104
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=3.1e-06 Score=74.04 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=60.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC---CcEeehhH-HHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALR---YYYFDSDS-LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~-l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~ 170 (212)
.|+|+|+|||||||+|+.||+.|. +..++... +..-..+..+.+ +.++.-++.|.+.-..++..-. ++-+||+-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslp-i~ke~yres~~ks~~rlldSal-kn~~VIvD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLP-ILKEVYRESFLKSVERLLDSAL-KNYLVIVD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccc-hHHHHHHHHHHHHHHHHHHHHh-cceEEEEe
Confidence 589999999999999999998873 44444332 111111101211 1222222233222222222222 35577753
Q ss_pred CCceeechhhHHhcc-------CCeEEEEEechhhhhcccCCCCCCCC
Q 028227 171 GNGAVQSSANLYEIS-------GTFKTWNIIMDRRSSRHGSKNGPQRI 211 (212)
Q Consensus 171 GgG~V~~~~~~~~L~-------~g~vV~Ld~~~~~v~R~~~~~~~~~~ 211 (212)
.-..++.--+++.. ...+||+.++.+...|.. .++++||
T Consensus 81 -dtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN-~ergepi 126 (261)
T COG4088 81 -DTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN-RERGEPI 126 (261)
T ss_pred -cccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh-ccCCCCC
Confidence 22223332233221 357999999998877777 6667776
No 105
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.30 E-value=2.3e-06 Score=84.35 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=36.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
...|.|.||+||||||+|+.||+++|++|+|+|.+++..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 347899999999999999999999999999999998866
No 106
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.29 E-value=1.1e-06 Score=75.25 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=34.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
..|.|+|++||||||+++.+++ +|++.+|+|++.++.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~ 40 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV 40 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence 5789999999999999999999 9999999999988553
No 107
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.28 E-value=4.3e-06 Score=67.86 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=25.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDS 124 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~ 124 (212)
.|+|.|++||||||+++.|++.+ |+.++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999999988 6655543
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.26 E-value=9.3e-07 Score=67.16 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=26.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
|+|+|+||||||++++.+|+.++.+++..|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 689999999999999999999998875443
No 109
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.25 E-value=2.8e-06 Score=82.20 Aligned_cols=86 Identities=19% Similarity=0.056 Sum_probs=57.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
.+..|+++|.|||||||+++.+++..|+.+++.|.+-. +......+.+.|.....+||...
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~-------------------~~~~~~~a~~~L~~G~sVVIDaT 428 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS-------------------TQNCLTACERALDQGKRCAIDNT 428 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH-------------------HHHHHHHHHHHHhCCCcEEEECC
Confidence 46789999999999999999999999999999998621 12222334555665666777654
Q ss_pred CceeechhhHH-hc---c-CC---eEEEEEechhhh
Q 028227 172 NGAVQSSANLY-EI---S-GT---FKTWNIIMDRRS 199 (212)
Q Consensus 172 gG~V~~~~~~~-~L---~-~g---~vV~Ld~~~~~v 199 (212)
. .+...|. ++ + .+ .+||++++.+..
T Consensus 429 n---~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~ 461 (526)
T TIGR01663 429 N---PDAASRAKFLQCARAAGIPCRCFLFNAPLAQA 461 (526)
T ss_pred C---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH
Confidence 3 2333333 22 2 33 578888876543
No 110
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.24 E-value=8.5e-06 Score=69.81 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=62.6
Q ss_pred HHHHHHHHhcc-cCCcEEEEEccCCCCHHHHHHHHHHHhCCc-----E-eehhHHHH-----HHhCCCchhhhhhhhchH
Q 028227 80 VKKKAADISTE-LKGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLVF-----EAAGGESAAKAFRESDEK 147 (212)
Q Consensus 80 lk~~~~~~~~~-l~~~~I~LvG~~GsGKTTvak~LA~~lg~~-----~-~d~D~l~~-----~~~G~~si~ei~~~~Ge~ 147 (212)
|.++.+.+... -++..|.|.|++||||||+++.|+..+... . +..|++.. ...|...........+.+
T Consensus 19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~ 98 (229)
T PRK09270 19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVA 98 (229)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHH
Confidence 44444444322 346789999999999999999999877431 2 55555331 111210000011111122
Q ss_pred HHHHHHHHHHHHHh--------------------------cCCCEEEEeCCceeechhhHHhcc--CCeEEEEEech
Q 028227 148 GYQQAETEVLKQLS--------------------------SMGRLVVCAGNGAVQSSANLYEIS--GTFKTWNIIMD 196 (212)
Q Consensus 148 ~fr~~E~~vL~~L~--------------------------~~~~~VVa~GgG~V~~~~~~~~L~--~g~vV~Ld~~~ 196 (212)
.+. +++..+. .....||..|.+.......|..+. .+.+|||+++.
T Consensus 99 ~~~----~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~ 171 (229)
T PRK09270 99 GLA----ALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPA 171 (229)
T ss_pred HHH----HHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCH
Confidence 222 2222221 123467778877776666676554 57999999975
No 111
>COG0645 Predicted kinase [General function prediction only]
Probab=98.23 E-value=7.2e-06 Score=68.90 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=37.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
+-+++.|.||+||||+++.|++.+|...+.+|.+.+.+.|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g 41 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG 41 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC
Confidence 4578899999999999999999999999999999998877
No 112
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=1.2e-05 Score=68.66 Aligned_cols=102 Identities=11% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC--Cc----hhhhhhhhchHHHHHHHHHHHHH-Hhc--
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ES----AAKAFRESDEKGYQQAETEVLKQ-LSS-- 162 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~--~s----i~ei~~~~Ge~~fr~~E~~vL~~-L~~-- 162 (212)
+...||++|.|||||-|.+..+++.+||.++.+++++.+...- .. +.++++ .|.-.=.+.-..+|+. |.+
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999999999998876541 11 112221 1211111222223322 222
Q ss_pred -CCCEEEEeCCceeechhhHHhcc------CCeEEEEEechh
Q 028227 163 -MGRLVVCAGNGAVQSSANLYEIS------GTFKTWNIIMDR 197 (212)
Q Consensus 163 -~~~~VVa~GgG~V~~~~~~~~L~------~g~vV~Ld~~~~ 197 (212)
.+..+| .|.+-+..++..+. ..+++|++++.+
T Consensus 86 ~~~~fLI---DGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee 124 (195)
T KOG3079|consen 86 DSNGFLI---DGYPRNVDQLVEFERKIQGDPDFVLFFDCPEE 124 (195)
T ss_pred CCCeEEe---cCCCCChHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 222555 35555555555442 379999999864
No 113
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.19 E-value=3.3e-06 Score=80.05 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=52.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH-HHH--HhCCCchhhhhhhhchHHH----------------HH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VFE--AAGGESAAKAFRESDEKGY----------------QQ 151 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l-~~~--~~G~~si~ei~~~~Ge~~f----------------r~ 151 (212)
..+.+|+|+||+|||||++|+.||+.++.+|+..|.. +++ +.| .+..+++++..+.+| ..
T Consensus 48 ~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG-~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~ 126 (443)
T PRK05201 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESIIRDLVEIAVKMVREEKREKVREKAEEA 126 (443)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999864 443 334 566566665555543 34
Q ss_pred HHHHHHHHHh
Q 028227 152 AETEVLKQLS 161 (212)
Q Consensus 152 ~E~~vL~~L~ 161 (212)
.|.+++..|.
T Consensus 127 ~e~ri~~~l~ 136 (443)
T PRK05201 127 AEERILDALL 136 (443)
T ss_pred HHHHHHHHhC
Confidence 5666777765
No 114
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.17 E-value=1.5e-05 Score=66.19 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=55.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC--Cchhhhhhhhc--------------------------hH
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESD--------------------------EK 147 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~--~si~ei~~~~G--------------------------e~ 147 (212)
|-|.+..|||++++|+.||+.||++|+|- +++.+.+.. .+. +.+...+ .+
T Consensus 2 ITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 2 ITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISE-EEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-------------SS-HHH--HH---HHS--------------
T ss_pred EEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCH-HHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 67889999999999999999999999999 555443321 111 1111111 22
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCceeechhhHHhcc---CCeEEEEEech-hhhhcccC
Q 028227 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEIS---GTFKTWNIIMD-RRSSRHGS 204 (212)
Q Consensus 148 ~fr~~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~---~g~vV~Ld~~~-~~v~R~~~ 204 (212)
.+...+.+++.+++..+++||. |-| .++ +|+ +.+-|||..+. .|++|...
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~-GR~-----a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~ 133 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIV-GRC-----ANY-ILRDIPNVLHVFIYAPLEFRVERIME 133 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEE-STT-----HHH-HTTT-TTEEEEEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEE-ecC-----Hhh-hhCCCCCeEEEEEECCHHHHHHHHHH
Confidence 3334556788888877788874 322 223 454 45789999875 36665433
No 115
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.17 E-value=5.5e-06 Score=70.15 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=32.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFE 130 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~ 130 (212)
|.|.|.+||||||+|+.|++.+ ++.+++.|+++..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 7889999999999999999998 6999999998763
No 116
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.16 E-value=1.6e-05 Score=65.36 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+++.|+|.|++||||||+++.|++.++
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999999985
No 117
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.14 E-value=2.7e-06 Score=71.49 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
.|.|+|..||||||+++.|++ +|++++|+|.+.++.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~ 39 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYE 39 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTS
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhh
Confidence 588999999999999999998 99999999999988764
No 118
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=6.1e-06 Score=71.87 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=35.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
..|.|=||.||||||+|+.||++||+.|+|+..++...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 57889999999999999999999999999999987644
No 119
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.06 E-value=1.9e-05 Score=71.66 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=52.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHHH------------hC----CCchhhhhhhhchHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AG----GESAAKAFRESDEKGYQQAET 154 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~~------------~G----~~si~ei~~~~Ge~~fr~~E~ 154 (212)
+..|+|+||+|||||+++..||+.++..+++.|.. +..+ .| ..+..+.-+......|.+.-.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~ 83 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDAL 83 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHH
Confidence 56899999999999999999999999999999995 2221 11 001111112223445666556
Q ss_pred HHHHHHhcCCCEEEEeCCc
Q 028227 155 EVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 155 ~vL~~L~~~~~~VVa~GgG 173 (212)
+.++++...+...|-+||.
T Consensus 84 ~~i~~i~~~gk~pIlvGGt 102 (307)
T PRK00091 84 AAIADILARGKLPILVGGT 102 (307)
T ss_pred HHHHHHHhCCCCEEEECcH
Confidence 6777776655554545653
No 120
>COG4639 Predicted kinase [General function prediction only]
Probab=98.06 E-value=2.9e-05 Score=64.84 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
.-|+|+|.+||||||+++.. .+..+.+++|++.... |...-.+......+..+...+..+-+.|...+-.|+..-.
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn- 78 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN- 78 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc-
Confidence 46899999999999999974 3578889999988765 2122233344445667777777777777766667774322
Q ss_pred eeechhhHHhc-c----C---CeEEEEEechhhh
Q 028227 174 AVQSSANLYEI-S----G---TFKTWNIIMDRRS 199 (212)
Q Consensus 174 ~V~~~~~~~~L-~----~---g~vV~Ld~~~~~v 199 (212)
.+..++..+ . . .+.||++.|.+..
T Consensus 79 --~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c 110 (168)
T COG4639 79 --LRREDRRKLIDLAKAYGYKIYAIVFDTPLELC 110 (168)
T ss_pred --CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH
Confidence 334445433 2 2 3578888876433
No 121
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=2.5e-05 Score=68.03 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=32.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCc---EeehhHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVFE 130 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~---~~d~D~l~~~ 130 (212)
..|.|.|.+||||||+++.|++.++.. .+..|+++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 577888999999999999999999955 7888988763
No 122
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.02 E-value=2e-05 Score=70.16 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=53.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa 169 (212)
.|+|+|.|||||||+++.|++.+ .+.+++-|.+.. . .. .+.+...|+..|..-...++.....+.+||.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~---~-~~--~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~ 76 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI---D-RN--DYADSKKEKEARGSLKSAVERALSKDTIVIL 76 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----T-TS--SS--GGGHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc---c-hh--hhhchhhhHHHHHHHHHHHHHhhccCeEEEE
Confidence 58999999999999999999864 344566555541 1 11 1223445666664433334434345667775
Q ss_pred eCCceeechhhHHhcc-------CCeEEEEEechh-hhhcccCCCCC
Q 028227 170 AGNGAVQSSANLYEIS-------GTFKTWNIIMDR-RSSRHGSKNGP 208 (212)
Q Consensus 170 ~GgG~V~~~~~~~~L~-------~g~vV~Ld~~~~-~v~R~~~~~~~ 208 (212)
-+ ...+...-+++.+ ...+||++++.+ ..+|...+..+
T Consensus 77 Dd-~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 77 DD-NNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP 122 (270)
T ss_dssp -S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred eC-CchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence 43 3344443333332 236899999754 44444444433
No 123
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.9e-05 Score=77.78 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred ccceeccCCcchHHHHHHHHH-----------h--cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHH
Q 028227 67 TVTKVAAEDPSFAVKKKAADI-----------S--TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEA 131 (212)
Q Consensus 67 ~~~~~~~~d~~~~lk~~~~~~-----------~--~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~ 131 (212)
.|.-++.++ +||++.++- . +--.++-|+++||||||||++||+||..-++.|+.. -+++-.+
T Consensus 432 ~W~dIGGlE---~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 432 SWDDIGGLE---ELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred ChhhccCHH---HHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 344444444 777777752 1 112468899999999999999999999988888754 7777777
Q ss_pred hCC--Cchhhhhhhh
Q 028227 132 AGG--ESAAKAFRES 144 (212)
Q Consensus 132 ~G~--~si~ei~~~~ 144 (212)
.|. ..+.++|+..
T Consensus 509 vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 509 VGESERAIREVFRKA 523 (693)
T ss_pred cCchHHHHHHHHHHH
Confidence 772 2244555443
No 124
>PHA00729 NTP-binding motif containing protein
Probab=97.98 E-value=1.6e-05 Score=69.46 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
..|+.+.++... .-.+|+|+|+||+||||+|..||++++
T Consensus 4 ~~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 4 LAKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445556665332 236899999999999999999999976
No 125
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.3e-05 Score=77.12 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=50.1
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhCC--Cchhhhhhhh-------------------ch
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGG--ESAAKAFRES-------------------DE 146 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G~--~si~ei~~~~-------------------Ge 146 (212)
...++-|+|-||||||||.+|+++|..+|+||+.. -+++-.+.|. ..+.++|++. .+
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence 34568899999999999999999999999999853 3444333331 1123333322 23
Q ss_pred HHHHHHHHHHHHHHh
Q 028227 147 KGYQQAETEVLKQLS 161 (212)
Q Consensus 147 ~~fr~~E~~vL~~L~ 161 (212)
.+-+++|.+++.+|.
T Consensus 300 ~aqreMErRiVaQLl 314 (802)
T KOG0733|consen 300 EAQREMERRIVAQLL 314 (802)
T ss_pred hHHHHHHHHHHHHHH
Confidence 456789999888886
No 126
>PRK12338 hypothetical protein; Provisional
Probab=97.97 E-value=6.1e-05 Score=68.90 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe-ehhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~-d~D~l~~~~~G 133 (212)
++..|+|.|+|||||||+|+.||+++|+.++ ++|.+.+.+.|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 4678999999999999999999999999988 55555554443
No 127
>PTZ00301 uridine kinase; Provisional
Probab=97.95 E-value=4e-05 Score=65.88 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~~ 129 (212)
+...|.|.|+|||||||+|+.|++.+. ...+..|.++.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 456789999999999999999988762 33667788764
No 128
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.94 E-value=3.8e-05 Score=64.36 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF 129 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~ 129 (212)
-++..+++.|+|||||||++..+...+ ++.++|.|.+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 357889999999999999999999986 789999999754
No 129
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=0.0002 Score=60.76 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=63.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHh---CCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC-EEE
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAA---GGESAAKAFRESDEKGYQQAETEVLKQLSSMGR-LVV 168 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~~~---G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~-~VV 168 (212)
+.++++|.||+||||+.+.+.+.+ .+.+++-.++.-+.. |.....+-+...-.+..++....+.+.+.++.. .+|
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iiv 84 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIV 84 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEE
Confidence 789999999999999999999999 888888888865553 211111222222234444555555555554433 444
Q ss_pred ------EeCCceeech--hhHHhccCCeEEEEEech
Q 028227 169 ------CAGNGAVQSS--ANLYEISGTFKTWNIIMD 196 (212)
Q Consensus 169 ------a~GgG~V~~~--~~~~~L~~g~vV~Ld~~~ 196 (212)
-+..|-+... +-.+.|.-+++|-|..+.
T Consensus 85 DtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp 120 (189)
T COG2019 85 DTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADP 120 (189)
T ss_pred eccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCH
Confidence 4444433322 234455578888888854
No 130
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.91 E-value=2.8e-05 Score=64.57 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
++..|+|+|++||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 578999999999999999999999875
No 131
>PLN02840 tRNA dimethylallyltransferase
Probab=97.90 E-value=3.3e-05 Score=73.06 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH--HHH-hC--CCch-------------hhhhhhhchHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--FEA-AG--GESA-------------AKAFRESDEKGYQQAE 153 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~--~~~-~G--~~si-------------~ei~~~~Ge~~fr~~E 153 (212)
++..|+|+|++||||||++..||+.++..+++.|.+. ..+ .| ..+. -+.-+++....|.+.-
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A 99 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDA 99 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHH
Confidence 3567999999999999999999999999999999742 111 01 0111 1111223345666666
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q 028227 154 TEVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 154 ~~vL~~L~~~~~~VVa~Gg 172 (212)
.++++++...+...|-+||
T Consensus 100 ~~~I~~i~~rgkiPIvVGG 118 (421)
T PLN02840 100 RRATQDILNRGRVPIVAGG 118 (421)
T ss_pred HHHHHHHHhcCCCEEEEcC
Confidence 7778888777665555565
No 132
>PRK06696 uridine kinase; Validated
Probab=97.89 E-value=1.6e-05 Score=67.93 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEee--hhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFD--SDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d--~D~l~~ 129 (212)
.+..|.|.|++||||||+|+.|++.+ |.+++. +|+++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 35688999999999999999999999 666654 888753
No 133
>PRK13973 thymidylate kinase; Provisional
Probab=97.89 E-value=0.00012 Score=62.21 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=30.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS 124 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~ 124 (212)
|+|.-|+|-|+.||||||+++.|++.| |+.++.+
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357889999999999999999999999 8887754
No 134
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.88 E-value=1.2e-05 Score=70.63 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
.+++|+||||+||||+|+.+|+.++..|.-
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 589999999999999999999999988753
No 135
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.87 E-value=4.6e-05 Score=68.67 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=51.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH--HHH-hC--CCc-------------hhhhhhhhchHHHHHHHHHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--FEA-AG--GES-------------AAKAFRESDEKGYQQAETEVL 157 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~--~~~-~G--~~s-------------i~ei~~~~Ge~~fr~~E~~vL 157 (212)
|+|+|++|||||+++..||+.++..++..|.+- ..+ .| ..+ .-+.-+......|...-.+++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i 81 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAI 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHH
Confidence 789999999999999999999999999999852 211 01 011 111122233455666666777
Q ss_pred HHHhcCCCEEEEeCC
Q 028227 158 KQLSSMGRLVVCAGN 172 (212)
Q Consensus 158 ~~L~~~~~~VVa~Gg 172 (212)
+++...+...|-+||
T Consensus 82 ~~~~~~g~~pi~vGG 96 (287)
T TIGR00174 82 ADITARGKIPLLVGG 96 (287)
T ss_pred HHHHhCCCCEEEEcC
Confidence 887776665565665
No 136
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.87 E-value=1.7e-05 Score=62.03 Aligned_cols=28 Identities=36% Similarity=0.294 Sum_probs=26.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
.|+|+|+||||||++++.+|+.++.+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 4899999999999999999999998874
No 137
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.86 E-value=1.1e-05 Score=80.14 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=34.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
.|.|.|+|||||||+++.||+.+|+.|+|++.++...
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 6899999999999999999999999999999987654
No 138
>PLN02748 tRNA dimethylallyltransferase
Probab=97.86 E-value=4.7e-05 Score=72.88 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=56.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHHH---hCCCchh-------------hhhhhhchHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA---AGGESAA-------------KAFRESDEKGYQQAE 153 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~~---~G~~si~-------------ei~~~~Ge~~fr~~E 153 (212)
++..|+|+|+.|||||+++..||+.++..++++|.. +..+ +...+.. +.-+++....|++.-
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A 100 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA 100 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence 456899999999999999999999999999999974 3211 1111111 111233456777777
Q ss_pred HHHHHHHhcCCCEEEEeCCc
Q 028227 154 TEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 154 ~~vL~~L~~~~~~VVa~GgG 173 (212)
..+++.+...+...|-+||.
T Consensus 101 ~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 101 VPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHhcCCCeEEEcCh
Confidence 77888887777666666663
No 139
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.86 E-value=2.2e-05 Score=71.35 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=33.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe---ehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF---DSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~---d~D~l~~~~~G 133 (212)
-+.|.+-|+.|+|||++||.||++||+.++ ++|.++-...|
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg 114 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG 114 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence 356778899999999999999999997664 78887665554
No 140
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.86 E-value=0.00026 Score=58.30 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|+|.|++||||||+++.|++.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999986
No 141
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.86 E-value=1.8e-05 Score=58.43 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|+|++||||||+++.||..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999988764
No 142
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.85 E-value=8.3e-05 Score=61.31 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=25.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
|+|.|++||||||+++.|++.+++.++.-
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~E 30 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVPE 30 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccccc
Confidence 78999999999999999999988766533
No 143
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.84 E-value=4.9e-05 Score=56.95 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~ 124 (212)
.+..++|+|++|+|||++++.+++.+ +..++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 46789999999999999999999987 5555433
No 144
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.80 E-value=2.9e-05 Score=79.12 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
|++..|.|-|++||||||+++.||++||+.|+|++.++...+
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 345689999999999999999999999999999999987664
No 145
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.79 E-value=5.1e-05 Score=61.28 Aligned_cols=43 Identities=33% Similarity=0.227 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~-~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
.+.++.++.+...++ +..|+|.|+.|+||||++|.+++.+|+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 356667777777764 6789999999999999999999999974
No 146
>PRK05439 pantothenate kinase; Provisional
Probab=97.78 E-value=7e-05 Score=68.25 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=30.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~~ 129 (212)
+..|.|.|++||||||+++.|++.++ ...+..|+++.
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 45788999999999999999998764 35678888763
No 147
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.77 E-value=2.9e-05 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l 117 (212)
|+|+|++||||||+++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999985
No 148
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.77 E-value=0.0002 Score=60.17 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=30.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcE--eehhHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFE 130 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~--~d~D~l~~~ 130 (212)
++.|+|-|++.|||||+++.|.+.+.-+| +..|.++..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 46899999999999999999999998665 566888874
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.76 E-value=4.2e-05 Score=67.14 Aligned_cols=42 Identities=24% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
.+.+++.... ..+..|+|.|+||||||++|+.||+.+|.+++
T Consensus 9 ~l~~~~l~~l--~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 9 RVTSRALRYL--KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHH--hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3444444422 24789999999999999999999999999887
No 150
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.71 E-value=6.4e-05 Score=65.58 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+++|+|+|||||||+|+.+|+.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999865
No 151
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.70 E-value=0.0001 Score=69.27 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=34.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G 133 (212)
+..+.|.||||||||.+++++|.++|+.|+ +..++..+..|
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 677889999999999999999999999876 55566666666
No 152
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.69 E-value=6.3e-05 Score=72.28 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||.+|+.+|..++++++..|
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4688999999999999999999999999988765
No 153
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.67 E-value=0.00062 Score=58.83 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l 127 (212)
.+.+++|+|++|||||++++.++..+. +.|+..|..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 346899999999999999999998765 578888764
No 154
>PRK09087 hypothetical protein; Validated
Probab=97.67 E-value=9.2e-05 Score=64.00 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=57.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhh--hhhhchHHH-HHHHHHHHHHHhcCCCEEEE
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKA--FRESDEKGY-QQAETEVLKQLSSMGRLVVC 169 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei--~~~~Ge~~f-r~~E~~vL~~L~~~~~~VVa 169 (212)
...++|+|++|||||++++.+++..+..|++.+.+..+...... ..+ +++.+.-.. .+.-.+++..+.+.+..+|-
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAA-EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhh-cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 34699999999999999999999999999999765443321000 000 111100000 11112344445544444554
Q ss_pred eCCce-----eechhhHHhccCCeEEEEEech
Q 028227 170 AGNGA-----VQSSANLYEISGTFKTWNIIMD 196 (212)
Q Consensus 170 ~GgG~-----V~~~~~~~~L~~g~vV~Ld~~~ 196 (212)
++... ...+.-+..+..+.++-|+.+.
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd 154 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD 154 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCceeecCCCC
Confidence 44311 1123344455678899888753
No 155
>PRK06620 hypothetical protein; Validated
Probab=97.66 E-value=0.00017 Score=61.79 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=54.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHH-HHHHHHHHHhcCCCEEEEeCC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQ-AETEVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~-~E~~vL~~L~~~~~~VVa~Gg 172 (212)
..++|+|++|||||++++++++..+..++.......+..+..++ =++++ -+.+.+ .-..++..+.+.+..+|-++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~-lliDd--i~~~~~~~lf~l~N~~~e~g~~ilits~ 121 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNA-FIIED--IENWQEPALLHIFNIINEKQKYLLLTSS 121 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCE-EEEec--cccchHHHHHHHHHHHHhcCCEEEEEcC
Confidence 67999999999999999999998887766544333322210111 01111 122221 112344444455555554443
Q ss_pred ceeec---hhhHHhccCCeEEEEEech
Q 028227 173 GAVQS---SANLYEISGTFKTWNIIMD 196 (212)
Q Consensus 173 G~V~~---~~~~~~L~~g~vV~Ld~~~ 196 (212)
..... +.-+..+..|.++-|+.+.
T Consensus 122 ~~p~~l~l~~L~SRl~~gl~~~l~~pd 148 (214)
T PRK06620 122 DKSRNFTLPDLSSRIKSVLSILLNSPD 148 (214)
T ss_pred CCccccchHHHHHHHhCCceEeeCCCC
Confidence 22111 3333444578899998753
No 156
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.66 E-value=0.00015 Score=69.03 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=29.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
++.++|+||||||||++++.||..++++|+..+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 568999999999999999999999999887654
No 157
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=8.6e-05 Score=66.20 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=31.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC---------CcEeehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR---------YYYFDSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg---------~~~~d~D~l~~~~~G 133 (212)
+..|+|+|+||||||++|+.+|+.+. +.+++.++++....|
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g 107 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG 107 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence 34799999999999999999988762 445666777665544
No 158
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.65 E-value=0.00013 Score=66.31 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=36.7
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc-EeehhHHHHHH
Q 028227 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEA 131 (212)
Q Consensus 87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~-~~d~D~l~~~~ 131 (212)
+...-++..|+|.|++||||||+|+.||+++|+. ++..|.+.+.+
T Consensus 86 i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~ 131 (301)
T PRK04220 86 IRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM 131 (301)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence 3333346789999999999999999999999997 68888887433
No 159
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.64 E-value=0.0004 Score=66.65 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc-EeehhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~-~~d~D~l~~~~~G 133 (212)
++..|+++|++|+||||++..||..+|+. ++.+|.+.+.+.+
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~ 296 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRA 296 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHh
Confidence 46889999999999999999999999997 6799998765543
No 160
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.63 E-value=0.00013 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg 118 (212)
|+|+|++||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999998754
No 161
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.00019 Score=61.43 Aligned_cols=28 Identities=29% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+|..++|.||+|+|||||.+.|-+..++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence 5789999999999999999999776543
No 162
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.62 E-value=5.7e-05 Score=71.10 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=31.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~ 126 (212)
...+|+|+|++|||||++|+.||+.++++|+..|.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 45789999999999999999999999999987665
No 163
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.62 E-value=0.00019 Score=60.34 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|+|+||+|||||||.+.|.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998775
No 164
>PLN02348 phosphoribulokinase
Probab=97.62 E-value=0.00014 Score=68.25 Aligned_cols=36 Identities=11% Similarity=-0.042 Sum_probs=31.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC--------------------cEeehhHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY--------------------YYFDSDSLV 128 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~--------------------~~~d~D~l~ 128 (212)
+..|.|.|++||||||+++.|++.++. ..+.+|+++
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 467889999999999999999999863 368889885
No 165
>PHA02244 ATPase-like protein
Probab=97.60 E-value=0.00011 Score=68.67 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=36.2
Q ss_pred HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (212)
Q Consensus 80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l 127 (212)
++.++..+.. .+..|+|+|++|||||++++.+|..++++|+..+.+
T Consensus 108 ~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 108 ETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred HHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 4444444333 267899999999999999999999999999876654
No 166
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.60 E-value=0.00011 Score=71.06 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=34.4
Q ss_pred HHHHHHHHH-hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 79 AVKKKAADI-STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 79 ~lk~~~~~~-~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
+|+.+.++. .+....+.++|+||+||||||..+.||+.+|+.+.+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 455555542 333335678899999999999999999999987775
No 167
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.59 E-value=6.3e-05 Score=69.04 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=30.1
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
...+..|+|.|+|||||||+++.||+.+|++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 344689999999999999999999999999997
No 168
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.59 E-value=5.8e-05 Score=63.51 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC---CcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~l~~ 129 (212)
++..|.|+|++||||||+++.|+..++ +.++..|.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK 45 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence 467899999999999999999998875 56788887653
No 169
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.58 E-value=0.0002 Score=60.02 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=31.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~ 129 (212)
.+..|+|+|++|||||++++.++... .+.|++.+.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 46799999999999999999999765 356788777643
No 170
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.57 E-value=0.00084 Score=56.87 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFE 130 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~ 130 (212)
....++|+|++|+|||++++.++..+ .+.|++.+.....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~ 84 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA 84 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence 45789999999999999999999887 7788888776543
No 171
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.56 E-value=0.00062 Score=59.19 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=33.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
.|-|+|..||||||+.+.+- ++|++.+|+|.+..+..
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv 39 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV 39 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence 47799999999999999995 89999999999987765
No 172
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.55 E-value=0.00023 Score=60.24 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.8
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
...++..|+|+|++|||||||++.|++.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3346788999999999999999999754
No 173
>PRK04195 replication factor C large subunit; Provisional
Probab=97.55 E-value=0.00015 Score=68.94 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.|+..++....--.+..++|+|+||+||||+++.||+.+++.+++.+
T Consensus 25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 45555554321112678999999999999999999999999888653
No 174
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00039 Score=58.53 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=60.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhc-hHHHHHHHHHHHHHHhcCCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGR 165 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~G-e~~fr~~E~~vL~~L~~~~~ 165 (212)
+|-.|+++|.+||||||+|-+|.+.|. .+.+|.|.+..-.. .++. |..++ .+..|+ -.++.+-++ ..
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN--~DL~--F~a~dR~ENIRR-igeVaKLFA--Da 102 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN--KDLG--FKAEDRNENIRR-IGEVAKLFA--DA 102 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc--cccC--cchhhhhhhHHH-HHHHHHHHh--cc
Confidence 478999999999999999999998872 35579999876432 2221 33222 223332 234444343 33
Q ss_pred EEEEeCCce----eechhhHHhccC-C-eEEEEEechhh
Q 028227 166 LVVCAGNGA----VQSSANLYEISG-T-FKTWNIIMDRR 198 (212)
Q Consensus 166 ~VVa~GgG~----V~~~~~~~~L~~-g-~vV~Ld~~~~~ 198 (212)
+||+.-.-+ ..+...++++.. + +-||.++|.+.
T Consensus 103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~v 141 (207)
T KOG0635|consen 103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEV 141 (207)
T ss_pred ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHH
Confidence 455432211 223455667763 3 56899987543
No 175
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.53 E-value=0.00096 Score=56.93 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=25.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
|+|-|+.||||||+++.|++.+++.++.
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l~~~~~~ 29 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYFP 29 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 7889999999999999999999876553
No 176
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.53 E-value=0.00073 Score=61.01 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=28.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~ 128 (212)
+..|.|.|++||||||+++.|+..+. +..+..|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 56788999999999999999987663 4456777765
No 177
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.53 E-value=0.00041 Score=62.50 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=26.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
...|+|+|++||||||+++.|+ .+|+.++|.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~ 36 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDN 36 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCeEECC
Confidence 4579999999999999999996 468877754
No 178
>PRK06893 DNA replication initiation factor; Validated
Probab=97.52 E-value=0.0015 Score=56.22 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
...++|+|++|||||++++++|..+ ...|++.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 3568999999999999999999875 678888863
No 179
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.51 E-value=9.4e-05 Score=68.70 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.++.|+|+|+||||||++|+.+|..++.+|+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 367899999999999999999999999887644
No 180
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.51 E-value=0.00034 Score=57.89 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++.|+|+||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998875
No 181
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.50 E-value=0.0001 Score=61.27 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=30.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~ 129 (212)
|.|.|.+||||||+++.|++.+ +...++.|+++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 7899999999999999999986 467899999986
No 182
>CHL00181 cbbX CbbX; Provisional
Probab=97.50 E-value=0.00013 Score=65.27 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=32.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC---------CcEeehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR---------YYYFDSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg---------~~~~d~D~l~~~~~G 133 (212)
+..|+|+|+||+|||++|+.+|+.+. +..++.++++.+..|
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g 108 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG 108 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence 45699999999999999999998752 345667777665555
No 183
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.50 E-value=7.9e-05 Score=60.04 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
+|+|+|.+|+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5899999999999999999998 99988
No 184
>PF13173 AAA_14: AAA domain
Probab=97.50 E-value=0.00013 Score=56.84 Aligned_cols=38 Identities=29% Similarity=0.214 Sum_probs=32.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC----CcEeehhHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVFE 130 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg----~~~~d~D~l~~~ 130 (212)
++.++|.|++||||||+.+.+++.+. +.|++.|+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR 43 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence 46789999999999999999998865 888988877654
No 185
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.49 E-value=9.9e-05 Score=61.52 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=27.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC---C------cEeehhHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALR---Y------YYFDSDSLV 128 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg---~------~~~d~D~l~ 128 (212)
.|.|.|++||||||+|+.|++.|+ . .++..|.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 378999999999999999999997 2 356667654
No 186
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00038 Score=65.02 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G 133 (212)
.++-|+|+||||+|||-+||++|...+..|+. .-+++.++.|
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiG 227 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIG 227 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhc
Confidence 47889999999999999999999999999975 5778888877
No 187
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.47 E-value=0.00012 Score=69.01 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=29.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+.+|+|+||+|||||++|+.||+.++++|.-.|
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 468999999999999999999999999887554
No 188
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.47 E-value=0.00053 Score=62.26 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=52.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH--HH---hCCCchh-------------hhhhhhchHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF--EA---AGGESAA-------------KAFRESDEKGYQQAET 154 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~--~~---~G~~si~-------------ei~~~~Ge~~fr~~E~ 154 (212)
++.|+|+||.|||||.+|-.||++ +...+++|..-- .+ +...+.. +.-+......|.+.-.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~ 82 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEAL 82 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHH
Confidence 457999999999999999999999 559999998732 11 0111111 1122334466777777
Q ss_pred HHHHHHhcCCCEEEEeCC
Q 028227 155 EVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 155 ~vL~~L~~~~~~VVa~Gg 172 (212)
++++++...+...|-+||
T Consensus 83 ~~i~~i~~~gk~PilvGG 100 (300)
T PRK14729 83 KIIKELRQQKKIPIFVGG 100 (300)
T ss_pred HHHHHHHHCCCCEEEEeC
Confidence 788888766665555665
No 189
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00031 Score=69.47 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G 133 (212)
.+.-|+|+||||||||-+||++|..-|..|+. .-+++.++.|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 46789999999999999999999998888875 4677777777
No 190
>PRK07667 uridine kinase; Provisional
Probab=97.44 E-value=0.00021 Score=59.83 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=32.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~ 131 (212)
...|.|.|++||||||+++.|++.++ ...++.|+++...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 45788999999999999999999873 4589999976543
No 191
>CHL00176 ftsH cell division protein; Validated
Probab=97.43 E-value=0.00053 Score=67.97 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=29.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
++.|+|+||||||||++++.+|...+++|+..+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 567999999999999999999999999988653
No 192
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.43 E-value=0.00015 Score=66.19 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
++.|+|+|+||||||++++.+|..++..|+...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 577999999999999999999999998887543
No 193
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.42 E-value=0.00011 Score=59.69 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
++.|+|+|++||||||+++.|++.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 468999999999999999999986643
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00017 Score=66.65 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=34.2
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l 127 (212)
+|.+.+|+|+||.|||||-+|+-||+.|++||--+|.-
T Consensus 94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 36788999999999999999999999999999866653
No 195
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00057 Score=68.94 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
|..-|+|+||||+|||-+||++|-.....|+.. -+++..+.|
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 356799999999999999999999999999864 677777777
No 196
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00056 Score=63.77 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=33.9
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 86 ~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
++..+.-+++|+.+||.|+|||.+||.||+-.|.||+
T Consensus 43 ~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 43 ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 3467778999999999999999999999999999998
No 197
>PRK13974 thymidylate kinase; Provisional
Probab=97.40 E-value=0.0017 Score=55.14 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=24.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+|..|+|.|++||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998874
No 198
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.40 E-value=0.00026 Score=65.95 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (212)
Q Consensus 76 ~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~ 126 (212)
....+++.++. +. ..+++|+|+||+||||+++.+|+.++..|+..+.
T Consensus 23 ~~~~L~~~i~~--~~--~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 23 PGKPLRRMIEA--GR--LSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred cchHHHHHHHc--CC--CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 34556666654 33 3589999999999999999999999988876543
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.40 E-value=0.00041 Score=69.20 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
.+..|+|+||||||||++++.+|..++++|+.. .+++....|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG 529 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence 357799999999999999999999999988755 345554444
No 200
>PRK15453 phosphoribulokinase; Provisional
Probab=97.39 E-value=0.00014 Score=65.82 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~ 129 (212)
++..|.|+|.+||||||+++.|++.++ ..+++.|.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 357899999999999999999998774 56899999875
No 201
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.38 E-value=0.00019 Score=67.23 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.++.|+|+|+||||||++++.+|..++.+|+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999999999988754
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.37 E-value=0.00025 Score=65.97 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+.+.++|+|||||||||+++.||+.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4577899999999999999999999965
No 203
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.36 E-value=0.00039 Score=67.33 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
.++.|+|+||||||||++++.+|+.++.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 36789999999999999999999998654
No 204
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.36 E-value=0.00026 Score=56.52 Aligned_cols=38 Identities=34% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 83 KAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 83 ~~~~~~~~l~-~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
.++.+...++ +..|+|.|..|+||||+.|.+++.+|..
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3445545554 6789999999999999999999999864
No 205
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.34 E-value=0.00095 Score=58.16 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=43.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhchHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr 150 (212)
+..|++||.|+.|||++|+.|++.|. ...++..++..+..+...-.++++...++...
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~ 74 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKK 74 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHH
Confidence 56899999999999999999998764 36789999999888743345667666555544
No 206
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0011 Score=61.31 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCCceeecccccCCCc-----cccceeccCCcchH-HHHHHH---HHhcccCC-----cEEEEEccCCCCHHHHHHHHHH
Q 028227 50 RKPRITTRSIADDTTS-----NTVTKVAAEDPSFA-VKKKAA---DISTELKG-----TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 50 ~~~~~~t~~~~~~~~~-----~~~~~~~~~d~~~~-lk~~~~---~~~~~l~~-----~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.|+..-.|+-+.++.. +.|..++.++..++ ||+... .|...+.| +-|+|+||||+|||.+|+++|.
T Consensus 109 ~pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 109 EPEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred ChhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 3455555665555432 24777777776543 432211 12333333 4599999999999999999999
Q ss_pred HhCCcEe--ehhHHHHHHhC
Q 028227 116 ALRYYYF--DSDSLVFEAAG 133 (212)
Q Consensus 116 ~lg~~~~--d~D~l~~~~~G 133 (212)
.-+-.|+ .+.+++.+.+|
T Consensus 189 EAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 189 EANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred hcCCceEEeehHHHHHHHhc
Confidence 8887775 55677777766
No 207
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0012 Score=60.91 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=54.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH--------------HHhCCCchhhhhh------hhchHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF--------------EAAGGESAAKAFR------ESDEKGYQQ 151 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~--------------~~~G~~si~ei~~------~~Ge~~fr~ 151 (212)
+.+.|+|+|+.|+|||-|+--||.+++-..+++|.+-- +.-| .+ +.++. +.-...|+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~g-VP-HHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKG-VP-HHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCC-CC-hHHhCcCChHhhccHHHHHH
Confidence 46789999999999999999999999999999998721 1111 11 11111 223456676
Q ss_pred HHHHHHHHHhcCCCEEEEeCCc
Q 028227 152 AETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 152 ~E~~vL~~L~~~~~~VVa~GgG 173 (212)
.-..+.+.+..++..=|-.||+
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs 105 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGS 105 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCc
Confidence 6677888888766644445654
No 208
>PRK06761 hypothetical protein; Provisional
Probab=97.30 E-value=0.00024 Score=63.98 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=28.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~ 126 (212)
+..|+|.|++||||||+++.|++.+....++.+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 4679999999999999999999999865444443
No 209
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.30 E-value=0.00039 Score=65.16 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.5
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehh
Q 028227 88 STELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD 125 (212)
Q Consensus 88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D 125 (212)
.+++.|+.|+|.||||||||.+|-.+|+.|| .||+...
T Consensus 45 ~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 45 EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS 84 (398)
T ss_dssp TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence 3788899999999999999999999999998 7887543
No 210
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.29 E-value=0.00029 Score=62.08 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=26.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
...++|+||||+|||++++.+|+.++..+.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~ 59 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLK 59 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457999999999999999999999987653
No 211
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.29 E-value=0.00029 Score=58.57 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=23.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.+++|+||+|||||.+++.||+.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 58899999999999999999999995
No 212
>PRK10646 ADP-binding protein; Provisional
Probab=97.28 E-value=0.00056 Score=56.56 Aligned_cols=42 Identities=24% Similarity=0.194 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~-~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.+.++.++.+...++ +..|+|.|.-|+||||++|.|++.+|+
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 356667777877776 568899999999999999999999997
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.28 E-value=0.0039 Score=53.51 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhccc--CCcEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHHhC---CCchhhhhh---
Q 028227 78 FAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEAAG---GESAAKAFR--- 142 (212)
Q Consensus 78 ~~lk~~~~~~~~~l--~~~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l~~~~~G---~~si~ei~~--- 142 (212)
......++.+.... ....++|.|++|+|||.+.++++.++ .+.|++.+++..+... ...+.++..
T Consensus 17 ~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~ 96 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR 96 (219)
T ss_dssp HHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh
Confidence 33344445553332 23579999999999999999998653 2568888887654421 011111111
Q ss_pred ------------hhchHHHHHHHHHHHHHHhcCCCEEEEeCCceee-----chhhHHhccCCeEEEEEech
Q 028227 143 ------------ESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQ-----SSANLYEISGTFKTWNIIMD 196 (212)
Q Consensus 143 ------------~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~V~-----~~~~~~~L~~g~vV~Ld~~~ 196 (212)
-.+.+...+.-..++..+...+..+|.++...+. .+.-...|..|.++-|+.|.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 1122333333445666666655555544443322 22333345589999998764
No 214
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.26 E-value=0.0003 Score=66.85 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.+..|+|+|+||||||++++.+|..++..|+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 467899999999999999999999999888754
No 215
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00087 Score=65.63 Aligned_cols=53 Identities=28% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcccC------------CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh-hHHHHHH
Q 028227 79 AVKKKAADISTELK------------GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-DSLVFEA 131 (212)
Q Consensus 79 ~lk~~~~~~~~~l~------------~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~-D~l~~~~ 131 (212)
+-|+..+||...|+ ++-|+|+||||+|||-+||++|-.-|+||+.. ...+.++
T Consensus 311 EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 311 EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 45566666644332 46799999999999999999999999999854 3334443
No 216
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.23 E-value=0.0011 Score=65.59 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
++.|+|+|+||||||++++.+|..++.+|+..+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 456999999999999999999999999987654
No 217
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.22 E-value=0.00093 Score=60.65 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=36.7
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
++-.+++|++.||||+|||-+||+||.....|++.. -.++-+..|
T Consensus 147 g~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 147 GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred cccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 334689999999999999999999999999988754 455655555
No 218
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0015 Score=59.61 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=33.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
+..|+|+||.+||||.+|-.||+++|.+++++|...
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 567999999999999999999999999999999973
No 219
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.20 E-value=0.00037 Score=62.74 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=27.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
...++|+||||+|||++++.+|+.+++.+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 468999999999999999999999998664
No 220
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00044 Score=69.59 Aligned_cols=55 Identities=27% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcccC------------CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 79 AVKKKAADISTELK------------GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 79 ~lk~~~~~~~~~l~------------~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
..|+.++||...|+ ++-++|+||||||||-+||++|-.-|+||+.. -++++...|
T Consensus 318 eAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 318 EAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred HHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 66777888754442 46799999999999999999999999999854 444554444
No 221
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.17 E-value=0.00038 Score=62.76 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=31.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
..+.+..++|.|+||+|||++++.+|+.++++|+
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4556889999999999999999999999998886
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.17 E-value=0.0019 Score=64.61 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=31.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehh--HHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD--SLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D--~l~ 128 (212)
.+.+++|+|+||+|||++++.||+.+ ++.++..| .++
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 46799999999999999999999987 76777655 554
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.17 E-value=0.00066 Score=56.66 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=33.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G 133 (212)
++.+++|+|++|+|||.+|..++.++ .+.|++.++++.+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 47899999999999999999998643 4678999999987653
No 224
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.17 E-value=0.00051 Score=67.07 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=33.0
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+.+.++...++|+||+||||||..+.||+.+|+.++.-
T Consensus 104 ~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 104 FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 35666678899999999999999999999999987743
No 225
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.16 E-value=0.00034 Score=60.21 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=27.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~ 128 (212)
|.|.|++||||||+++.|+..+. ..++..|.++
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 67899999999999999999883 4567778775
No 226
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00041 Score=65.72 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh--HHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D--~l~~~~~G 133 (212)
.++.|+|+||||||||.+|+++|..++++|+..+ ++.-+..|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVG 318 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccc
Confidence 3568999999999999999999999999887554 44443344
No 227
>PRK09183 transposase/IS protein; Provisional
Probab=97.14 E-value=0.00068 Score=59.74 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~ 129 (212)
++.+++|+|++|+|||+++..|+... | +.|++..+++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 47899999999999999999997553 4 45667666653
No 228
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00035 Score=64.77 Aligned_cols=28 Identities=32% Similarity=0.231 Sum_probs=24.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcE
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYY 121 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~ 121 (212)
+.|+|.||||+|||+++|+||++|.++.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRT 205 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeee
Confidence 5688999999999999999999997653
No 229
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.10 E-value=0.0042 Score=58.49 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----C--CcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g--~~~~d~D~l~~~~ 131 (212)
...++|+|++|+|||+++++++..+ + +.|++.+++..+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 3679999999999999999999876 3 4477887765543
No 230
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00054 Score=59.62 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=26.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
...|+|-||.|+||||+|+.||++++.+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 367899999999999999999999996553
No 231
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.07 E-value=0.00058 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 232
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.07 E-value=0.00044 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg 118 (212)
|+|.|++|+|||++++.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987664
No 233
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.05 E-value=0.00037 Score=56.41 Aligned_cols=39 Identities=33% Similarity=0.332 Sum_probs=26.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeeh----hHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS----DSLVFEAAG 133 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~----D~l~~~~~G 133 (212)
.|+|.|+||+|||++++.||+.+|..|-+. |-+-....|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G 43 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG 43 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence 378999999999999999999999988644 555566665
No 234
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.05 E-value=0.0014 Score=57.96 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
.++|+|++|+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999874
No 235
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.03 E-value=0.00072 Score=52.79 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=28.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~ 129 (212)
+..+.|+|++||||||+.+.+. -|-..++.|++..
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~ 49 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE 49 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence 5789999999999999999997 4545667776644
No 236
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.03 E-value=0.00064 Score=67.81 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+|+||||||++++.+|..++.+|+..+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 3578999999999999999999999998887543
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00064 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+|+++|+||+||||+++.+|+.|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4689999999999999999999776
No 238
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.00094 Score=59.58 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~ 131 (212)
++.+++|+|++|+|||.++..++..+ | +.|++..+++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 46899999999999999999998643 4 6678888887754
No 239
>PLN03025 replication factor C subunit; Provisional
Probab=96.99 E-value=0.0013 Score=59.14 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=22.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+++|+||||+||||+++.+|+.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999987
No 240
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.99 E-value=0.0021 Score=58.05 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=23.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+..|.|.|++|+||||+++.|+..+.
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~ 107 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLS 107 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHh
Confidence 56799999999999999999998774
No 241
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.99 E-value=0.00082 Score=55.81 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC--CcEeeh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~ 124 (212)
..|+|+|++|||||++|..++..++ +.|+.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 4689999999999999999999987 455555
No 242
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.98 E-value=0.0005 Score=61.89 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=30.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~ 129 (212)
|.|+|.+||||||+++.|++.++ +.+++.|+++.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 78999999999999999998764 57899999876
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.97 E-value=0.00072 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.212 Sum_probs=20.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+..++|+|++|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999876
No 244
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.97 E-value=0.00097 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+++.|+|+||+||||+||++.|.+.++
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 467899999999999999999998764
No 245
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0014 Score=57.84 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
++...+|+|+||+||.|++..|++.+++.++.+.++..+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ 53 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDE 53 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHH
Confidence 4688999999999999999999999999999998887765
No 246
>PRK07429 phosphoribulokinase; Provisional
Probab=96.97 E-value=0.00074 Score=61.80 Aligned_cols=36 Identities=22% Similarity=0.072 Sum_probs=31.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC---CcEeehhHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~l~ 128 (212)
...|.|+|++||||||+++.|++.++ ...++.|+++
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 46789999999999999999999987 5678888874
No 247
>PRK06526 transposase; Provisional
Probab=96.95 E-value=0.001 Score=58.76 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=30.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~ 131 (212)
+.+++|+|++|+|||+++..|+..+ | +.|+...+++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 6799999999999999999998653 3 4556666666544
No 248
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00059 Score=65.02 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=29.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+--+|+||||+||||+..++|..|+|.++|++
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEee
Confidence 55789999999999999999999999998764
No 249
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.0033 Score=62.19 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=31.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l~~~~ 131 (212)
..++|+|++|+|||.|+++++..+ .+.|+++++++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 459999999999999999999865 34788888877554
No 250
>PRK12377 putative replication protein; Provisional
Probab=96.95 E-value=0.0026 Score=56.12 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=31.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~ 131 (212)
..+++|+|++|+|||+++.++|..+ | +.|++..+++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3689999999999999999999876 3 3577777776644
No 251
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.94 E-value=0.00091 Score=62.72 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=27.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
.++|+|+|++|||||||++.||+.+|..++
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 578999999999999999999999998754
No 252
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.92 E-value=0.0073 Score=55.92 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=30.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----C--CcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g--~~~~d~D~l~~~~ 131 (212)
...++|+|++|+|||+++++++..+ + +.|++++++..+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF 181 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence 3578999999999999999999765 3 4577887765543
No 253
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.92 E-value=0.001 Score=60.61 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=31.7
Q ss_pred HHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 85 ~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
..+.+.+ .+.|+|+|++|+||||+++.|++.++.+++.
T Consensus 155 ~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 155 REVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred HHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4445555 4689999999999999999999999988753
No 254
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0013 Score=63.02 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+||||+||||+|+.+|+.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999876
No 255
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.0098 Score=56.32 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=31.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l~~~~ 131 (212)
..++|+|++|+|||+++++++..+ .+.|+++++++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 579999999999999999999874 35678888876554
No 256
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0097 Score=53.62 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=33.7
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcE-eehhHHHH
Q 028227 88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVF 129 (212)
Q Consensus 88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~-~d~D~l~~ 129 (212)
.+...+..|+|=|.+|+||||+|..||.+||... +.+|.+.+
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 3444567777778999999999999999999865 57777655
No 257
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.87 E-value=0.0015 Score=65.74 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred chHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (212)
Q Consensus 77 ~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l 127 (212)
...|++.++. +. ..+++|+|+||+||||+++.+|+.++..|+..+..
T Consensus 40 ~~~L~~~i~~--~~--~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 40 GRLLRRAIKA--DR--VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred hHHHHHHHhc--CC--CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 3455544443 33 35899999999999999999999999888776654
No 258
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.87 E-value=0.0015 Score=56.82 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=29.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
+..++|+|+||+||||+|+.|+. ...+++.|.-.....|
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g 50 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccC
Confidence 46799999999999999999972 3566777775444433
No 259
>PF05729 NACHT: NACHT domain
Probab=96.87 E-value=0.0011 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++|+|.+|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999765
No 260
>PRK05642 DNA replication initiation factor; Validated
Probab=96.86 E-value=0.0032 Score=54.45 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=30.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH-----hCCcEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA-----LRYYYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~-----lg~~~~d~D~l~~ 129 (212)
...++|+|++|+|||.+++.++.+ ..+.|++.+++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 367899999999999999999753 3567889988764
No 261
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0014 Score=63.20 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|+|++|+||||+|+.||+.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999874
No 262
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.85 E-value=0.00092 Score=59.51 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=28.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV 128 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~ 128 (212)
|.|+|++||||||+++.|+..+ +...++.|++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6799999999999999999877 46678888764
No 263
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0017 Score=59.60 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+||+|+||||+++.+|+.+++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 356789999999999999999999875
No 264
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.004 Score=62.71 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=36.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
.+.|+|+||||||||.++.++|...++.|+.. -+++.++.|
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 67899999999999999999999999999864 677777777
No 265
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.84 E-value=0.0013 Score=53.25 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=27.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l 127 (212)
.++++|++|+||||++..+|..+ | +.++|.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 57899999999999999998765 4 456888843
No 266
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.82 E-value=0.0069 Score=53.34 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=30.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~ 131 (212)
..++|.|++|+|||+++..+|..+ | +.|++..+++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 589999999999999999999877 3 4566777766543
No 267
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0011 Score=66.96 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=28.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.+++|+||+|||||++|+.||+.++.+++..|
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id 520 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence 36899999999999999999999998886444
No 268
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.81 E-value=0.0019 Score=60.98 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=37.5
Q ss_pred cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhH
Q 028227 73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS 126 (212)
Q Consensus 73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~ 126 (212)
-+.++..|++-++. +.+ .+++|+||||+||||+|+.|+... .+.|+.+..
T Consensus 146 lv~q~gllrs~ieq--~~i--pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 146 LVGQDGLLRSLIEQ--NRI--PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hcCcchHHHHHHHc--CCC--CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 34456677766666 554 689999999999999999998644 466776544
No 269
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.80 E-value=0.0028 Score=52.36 Aligned_cols=41 Identities=29% Similarity=0.246 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 79 AVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 79 ~lk~~~~~~~~~l-~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+.++.++.+...+ .+..|+|-|.-|+||||++|.+++.+|.
T Consensus 10 ~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 10 ATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 4556677777777 5889999999999999999999999994
No 270
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.78 E-value=0.0011 Score=51.19 Aligned_cols=26 Identities=42% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 47899999999999999999997543
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.77 E-value=0.0028 Score=56.07 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=25.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
+..++|+|++|+|||++++.+++.++..++.
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~ 73 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLF 73 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceE
Confidence 3455668999999999999999998866543
No 272
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.76 E-value=0.0012 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=18.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+..++|+|++|+|||++.+.+.+.+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999887654
No 273
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.76 E-value=0.0013 Score=57.71 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
.++|+||.|+|||.+|-.||+++|++++..|.+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 5789999999999999999999999999999873
No 274
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0031 Score=56.21 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C---CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g---~~~~d~D~l 127 (212)
++..|.|+|+.|+||||++..||..+ | +.+++.|.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 35689999999999999999998754 3 357888874
No 275
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0023 Score=60.66 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=28.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+.|+++||||+|||-+||++|...|-.|++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 6899999999999999999999999998854
No 276
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.75 E-value=0.0013 Score=71.68 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=33.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~ 129 (212)
.++.|+|+||||||||.+||+||...++||+ ++.+++.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 4789999999999999999999999999986 5566664
No 277
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.74 E-value=0.0027 Score=59.61 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=32.0
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEee
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD 123 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d 123 (212)
+.+.|+-|+++||||+|||.+|-.+|+.|| .||+.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 788999999999999999999999999998 66653
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.73 E-value=0.0018 Score=54.36 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
+..++..+.|.|+||||||+++..+|... .+.|+|++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 55678899999999999999999998654 345787764
No 279
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.73 E-value=0.0019 Score=53.82 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=31.0
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~ 126 (212)
+..++..+.|+|+||||||+++..++... | +.|+|++.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45568999999999999999999988543 3 67788864
No 280
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0011 Score=61.94 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+++.|+|.||||||||-+|+++|++.|..|+..+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3678999999999999999999999999998653
No 281
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.73 E-value=0.0011 Score=55.81 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=29.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC-CcEeehhHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg-~~~~d~D~l 127 (212)
|+=++.+||||||+|..|+.-+| |.++-.|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 34478999999999999999999 999999996
No 282
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0014 Score=58.27 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH----hCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA----LRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~----lg~~~~d~D 125 (212)
+|.++-|+|.+||||||+++.||-. .|-..+|..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 4889999999999999999999842 244445553
No 283
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0015 Score=62.56 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=32.1
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+|.+.+|+|+||.|||||-+++-||+-+++||.=+|
T Consensus 223 ~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcD 258 (564)
T KOG0745|consen 223 ELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICD 258 (564)
T ss_pred eeecccEEEECCCCCchhHHHHHHHHHhCCCeEEec
Confidence 356789999999999999999999999999997444
No 284
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.71 E-value=0.0034 Score=57.53 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=33.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~ 131 (212)
+.+++|+|++|+|||+++.++|..+ .+.|++.++++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4889999999999999999999875 46678888876654
No 285
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.69 E-value=0.0023 Score=64.87 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+.+++|+|+||+|||++++.||+.+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999976
No 286
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.69 E-value=0.002 Score=63.66 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+++.++|+||||+||||+++.||+.+.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 578999999999999999999999875
No 287
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0027 Score=59.10 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=25.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|.||+|+||||+|+.+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3458899999999999999999999874
No 288
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.67 E-value=0.0039 Score=56.73 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+.+++|+|+||+|||++.+.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999866
No 289
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0017 Score=59.19 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=27.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
--.|+|.||||-||||+|..+|..+|..+-
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 368999999999999999999999997654
No 290
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.67 E-value=0.0065 Score=56.12 Aligned_cols=108 Identities=21% Similarity=0.101 Sum_probs=67.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhh-hhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~-~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
..-+++.|+.|||||++...|++. ++..+|+....+-. | .....+.. +--...|...-...|..+.....++|-+-
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr-G-S~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~E 217 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR-G-SSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDE 217 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc-c-ccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEec
Confidence 345778899999999999999765 88899999987643 2 11111111 11234455444445554443233444322
Q ss_pred C---c-eeechhhHHhccCCeEEEEEech-hhhhccc
Q 028227 172 N---G-AVQSSANLYEISGTFKTWNIIMD-RRSSRHG 203 (212)
Q Consensus 172 g---G-~V~~~~~~~~L~~g~vV~Ld~~~-~~v~R~~ 203 (212)
+ | +.+...-++.|+.+.+|+|+.+. .|++|..
T Consensus 218 s~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~ 254 (345)
T PRK11784 218 SRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVERLL 254 (345)
T ss_pred cccccCccCCHHHHHHHhhCCEEEEECCHHHHHHHHH
Confidence 2 2 23445667788899999999975 5777754
No 291
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.66 E-value=0.0025 Score=65.04 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+.+++|+|+||+|||++++.||..+
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999987
No 292
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.65 E-value=0.0023 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+.+++|+|+||+|||++++.+++.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 293
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.0025 Score=61.69 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=25.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|+|++|+||||+|+.+|+.+++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4679999999999999999999999874
No 294
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0045 Score=58.94 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~l~ 128 (212)
++..|+|+|++||||||++..||..+ | ..+++.|.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 45679999999999999999999754 2 4568888853
No 295
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.0027 Score=61.32 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.4
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+.+ +..++|+|++|+||||+|+.+|+.+++.
T Consensus 32 ~ri-~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 32 NKI-PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCC-CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 444 5689999999999999999999988653
No 296
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0031 Score=60.97 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
.|++.++. +.+ +..++|+|++|+||||+|+.||+.+++.
T Consensus 27 ~L~~~~~~--~~l-~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 27 ALSNALDQ--QYL-HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHHHHh--CCC-CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44444444 444 4567899999999999999999999874
No 297
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0029 Score=63.30 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.|++.++. +.+ ...++|+|++|+||||+|+.||+.+++
T Consensus 26 ~L~~aI~~--grl-~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 26 ALSSALER--GRL-HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHc--CCC-CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45544443 443 467899999999999999999999987
No 298
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.62 E-value=0.0021 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
...++|+|++|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34789999999999999999998875
No 299
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.62 E-value=0.0019 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999998654
No 300
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0053 Score=56.13 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
.++-|+++||||+|||-+|+++|.+.+.-|+.. .+++.++.|
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvg 253 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG 253 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhh
Confidence 367899999999999999999999999888753 556666655
No 301
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.002 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4788999999999999999999854
No 302
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.59 E-value=0.0019 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..|.|+||+||||||+-|.+|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 57899999999999999999999743
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.58 E-value=0.0021 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 304
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.58 E-value=0.002 Score=54.01 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 305
>PRK08727 hypothetical protein; Validated
Probab=96.58 E-value=0.016 Score=49.94 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=28.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l~~ 129 (212)
...++|+|++|+|||+++++++.++ |. .|+..++...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 3569999999999999999986543 43 5777766543
No 306
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.58 E-value=0.0066 Score=55.02 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=33.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~ 131 (212)
.+..++|+|++|+|||.++.++|..+ | +.|+...+++.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 35789999999999999999999876 4 4567888876655
No 307
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.58 E-value=0.0021 Score=53.65 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998653
No 308
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.57 E-value=0.0018 Score=65.16 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=33.2
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227 88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (212)
Q Consensus 88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~ 126 (212)
.+....+..+|+|+||-||||||..+|+.-||.+++...
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA 359 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA 359 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence 344456788999999999999999999999999997643
No 309
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.57 E-value=0.0021 Score=53.73 Aligned_cols=26 Identities=50% Similarity=0.534 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 310
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0021 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 311
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.56 E-value=0.0038 Score=54.80 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=28.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcE-eehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~-~d~D~l~~~~ 131 (212)
.|.|+|+|||||||+++.+.+ .|.++ +.+-+.+++.
T Consensus 2 iI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~ 38 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI 38 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence 589999999999999999966 46666 7665555543
No 312
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.56 E-value=0.0031 Score=60.82 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=33.3
Q ss_pred cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.-+.+.-|++|.++ +..-|++.|+||+||||++++||+-+
T Consensus 248 dY~L~dkl~eRL~e-----raeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 248 DYGLSDKLKERLEE-----RAEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcCCCHHHHHHHHh-----hhcceEEecCCCCChhHHHHHHHHHH
Confidence 44556778888888 34689999999999999999999865
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0021 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|.-|.|+|++||||||+-+.+|-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 478899999999999999999984
No 314
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.56 E-value=0.0022 Score=64.23 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=28.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLV 128 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~ 128 (212)
+++|+||+|+|||++|+.||+.++.+++ |+.++.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 5789999999999999999999998765 444443
No 315
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.56 E-value=0.0027 Score=58.36 Aligned_cols=47 Identities=15% Similarity=-0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~ 129 (212)
.|++...+ .. ....++.||||+|||+.++++|+++..+-.--+.+.+
T Consensus 47 ~L~~a~~~--~~--lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 47 VLKNALLR--RI--LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHHHHhh--cC--CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 45655555 22 3578999999999999999999999886555555554
No 316
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.55 E-value=0.002 Score=61.72 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=25.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.+.+|+|.|+||+|||++|+.||..+..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999999999999998853
No 317
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0032 Score=61.68 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=41.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC---cEeehhHHHHHHhCC--Cchhhhhhhh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRY---YYFDSDSLVFEAAGG--ESAAKAFRES 144 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~---~~~d~D~l~~~~~G~--~si~ei~~~~ 144 (212)
+-|+|+||||+|||-+||.+.+.|+. ..++.-+++.++.|. ..++++|++.
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDA 312 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADA 312 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhH
Confidence 67999999999999999999999985 468999999999882 2345556554
No 318
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.55 E-value=0.0044 Score=55.90 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=29.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~ 129 (212)
+.+|+|+|++||||||+.+.|.+.+ +...+-.++..|
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 5799999999999999999999876 344555555444
No 319
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0022 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999998543
No 320
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.003 Score=64.92 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
|++.+.. +.+ +..++|+|++|+||||+++.||+.+++.
T Consensus 28 LknaI~~--~rl-~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 28 LTNALTQ--QRL-HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHHHHh--CCC-CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4444443 444 3456899999999999999999999875
No 321
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.53 E-value=0.0023 Score=53.40 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 322
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.53 E-value=0.0024 Score=49.37 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHH
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLV 128 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~ 128 (212)
++|+|++|+|||++++.++... ...|++.+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 6799999999999999998776 24566665544
No 323
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.0064 Score=53.92 Aligned_cols=38 Identities=29% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----CC--cEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~--~~~d~D~l~~ 129 (212)
.+.+++|+|++|+|||+++.++|..+ |+ .|+...+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 36789999999999999999998865 33 4666655544
No 324
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.52 E-value=0.0023 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999998543
No 325
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.52 E-value=0.0024 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 326
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.52 E-value=0.0025 Score=53.05 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHhcccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 85 ~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+++...++++.++|+|++|+||||+...|...
T Consensus 27 ~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 27 EELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44556677799999999999999999999543
No 327
>PRK13695 putative NTPase; Provisional
Probab=96.51 E-value=0.0038 Score=50.90 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=23.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY 120 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~ 120 (212)
.+|+|+|++||||||+.+.++..+ |+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 378999999999999999988765 555
No 328
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.51 E-value=0.0023 Score=53.76 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.51 E-value=0.0027 Score=52.67 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=23.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+..++|+|++||||||+.+.|+..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999998765
No 330
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.50 E-value=0.0051 Score=58.55 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l 127 (212)
++..|+++|++|+||||++..||..+ | ..+++.|.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46789999999999999999999766 3 445777764
No 331
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.50 E-value=0.0025 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999765
No 332
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.50 E-value=0.0027 Score=53.90 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=27.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSL 127 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l 127 (212)
++.|+|+||.|+||||..-.||..+ ...++.+|.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 4679999999999999999998765 3456777765
No 333
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0022 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
|.-++|+||+||||||+-|.+|-
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 67899999999999999999983
No 334
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.50 E-value=0.0022 Score=54.38 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999999854
No 335
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.49 E-value=0.0026 Score=52.82 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 336
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0025 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 337
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0025 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 338
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.48 E-value=0.0023 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999999864
No 339
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.48 E-value=0.0026 Score=53.05 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 340
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0026 Score=53.96 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998654
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.47 E-value=0.012 Score=55.96 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=29.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLV 128 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~ 128 (212)
+..|.|+|++|+||||++..||..+ | ...+++|.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4679999999999999999999766 5 4557888754
No 342
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.47 E-value=0.003 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|+++|.+|+||||+.+.|+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 343
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.47 E-value=0.0027 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 344
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.46 E-value=0.0027 Score=53.28 Aligned_cols=26 Identities=42% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 345
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.45 E-value=0.0028 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 346
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.45 E-value=0.0025 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
++|+|+|+.|||||||++.|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999999954
No 347
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0028 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 348
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.45 E-value=0.0027 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999864
No 349
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.0038 Score=60.31 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+|+||+||||+++.||+.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455799999999999999999999865
No 350
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.44 E-value=0.0027 Score=53.74 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 351
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0029 Score=51.61 Aligned_cols=26 Identities=42% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 352
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.41 E-value=0.0031 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998653
No 353
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0033 Score=60.16 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhccc--------CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 77 SFAVKKKAADISTEL--------KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 77 ~~~lk~~~~~~~~~l--------~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
...|+++++.++..- .-++|+++||||+|||-+|+.||.+-|+.|-
T Consensus 360 ~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA 413 (630)
T KOG0742|consen 360 HPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYA 413 (630)
T ss_pred CHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCcee
Confidence 356888898872211 1268999999999999999999999887653
No 354
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.41 E-value=0.003 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 355
>PRK08116 hypothetical protein; Validated
Probab=96.40 E-value=0.0055 Score=54.34 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~ 131 (212)
+..++|+|++|+|||.++.++|+.+ + +.|++..+++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3469999999999999999999875 3 4567777766543
No 356
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.40 E-value=0.0031 Score=52.87 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999998543
No 357
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.39 E-value=0.0031 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 358
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.39 E-value=0.0031 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 359
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0032 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 360
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.39 E-value=0.0032 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999998653
No 361
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.0046 Score=60.38 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
..++|+|++|+||||+|+.||+.+++
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999999876
No 362
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.025 Score=49.93 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=33.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~ 131 (212)
++.+++|+|+||+|||.++-+++..+ .+.|+..-+++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 68999999999999999999998765 34567777777655
No 363
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0034 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 364
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0032 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998543
No 365
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0033 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.315 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 366
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.008 Score=56.82 Aligned_cols=35 Identities=29% Similarity=0.189 Sum_probs=28.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSL 127 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l 127 (212)
+..|+|+|++|+||||++..||..+ .+.+++.|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5689999999999999988887543 2567899985
No 367
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.36 E-value=0.0034 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999854
No 368
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.35 E-value=0.0041 Score=52.54 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=30.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH-----------hCCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA-----------LRYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~-----------lg~~~~d~D~ 126 (212)
+..++..+.|+|+||||||+++..++.. -+..|+|++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 4556899999999999999999999743 3456677654
No 369
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.35 E-value=0.0072 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=22.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..++|+|++|+|||++++.+++.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999987
No 370
>PF13479 AAA_24: AAA domain
Probab=96.35 E-value=0.0039 Score=53.05 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=26.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l 127 (212)
+.+++|+|+||+||||++..+ -+.-|+|+|.=
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL---PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCC
Confidence 568999999999999999988 34567777764
No 371
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.0053 Score=59.52 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|+|++|+||||+|+.||+.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999873
No 372
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.35 E-value=0.024 Score=53.99 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=29.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFE 130 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~ 130 (212)
..++|+|++|+|||+++++++..+ .+.|++.+.+..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 579999999999999999999865 3467777766543
No 373
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0034 Score=52.14 Aligned_cols=24 Identities=42% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|..+.|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999984
No 374
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.34 E-value=0.0034 Score=53.23 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
++..+.|+|++||||||+.+.|+..
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999853
No 375
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.34 E-value=0.0034 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 376
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.34 E-value=0.0037 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999998653
No 377
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.34 E-value=0.0036 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEccCCCCHHHHHHHHHHHhCC
Q 028227 98 LVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 98 LvG~~GsGKTTvak~LA~~lg~ 119 (212)
++||+||||||+++.+.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999987743
No 378
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.013 Score=49.69 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=56.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc----Ee------ehhHHHHHHhCCCchhhhhhhhchHHHH----------H
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----YF------DSDSLVFEAAGGESAAKAFRESDEKGYQ----------Q 151 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~----~~------d~D~l~~~~~G~~si~ei~~~~Ge~~fr----------~ 151 (212)
.|+-|+++||+|+||-|+-..+...+.-. |+ ..|.--|..-- .+-.++....++..|. .
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~a-vs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDA-LSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccc-cCHHHHHHHhhcCceeEEehhcCcccc
Confidence 47889999999999999998888776432 32 12221111000 1223333333333331 1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCceeechhhHHhccCCeEEEEEechh
Q 028227 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR 197 (212)
Q Consensus 152 ~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~~~~ 197 (212)
.=.++-..|. .+..||+.|.-+++. +.+.....-.+|-|.++.+
T Consensus 83 ip~eId~wl~-~G~vvl~NgSRa~Lp-~arrry~~Llvv~ita~p~ 126 (192)
T COG3709 83 IPAEIDLWLA-AGDVVLVNGSRAVLP-QARRRYPQLLVVCITASPE 126 (192)
T ss_pred CchhHHHHHh-CCCEEEEeccHhhhH-HHHHhhhcceeEEEecCHH
Confidence 1133444554 567788877655543 3344444556788887543
No 379
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.33 E-value=0.0036 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998543
No 380
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.0054 Score=61.54 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|+|++|+||||+++.||+.+++.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4678999999999999999999999874
No 381
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.0036 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999998653
No 382
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.012 Score=53.57 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=35.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G 133 (212)
.++-|+++||||||||-++|++|......|+ ...+++.+++|
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 4688999999999999999999998877776 45677777777
No 383
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.32 E-value=0.0038 Score=52.04 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 384
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.31 E-value=0.0039 Score=50.80 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998654
No 385
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0075 Score=55.84 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=35.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G 133 (212)
++.+.|+|+||.|||-+++++|..+|+.|+ .+..+..+..|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 567899999999999999999999998886 55677777776
No 386
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.31 E-value=0.0038 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 387
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.30 E-value=0.0052 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~ 126 (212)
.+.-|+|+|++|+||||++..|.++ |+.++.=|.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~ 46 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADDR 46 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence 4688999999999999999998875 788775443
No 388
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0038 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 389
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.29 E-value=0.0037 Score=52.97 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 47899999999999999999998654
No 390
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.0039 Score=53.67 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999999964
No 391
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0036 Score=52.30 Aligned_cols=23 Identities=43% Similarity=0.375 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+ .+.|+|++||||||+.+.|+..
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 6 8999999999999999999854
No 392
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.26 E-value=0.0054 Score=48.65 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.3
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
...+...|.|+|++||||||+.+.|...
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 3344678999999999999999999763
No 393
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.26 E-value=0.004 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 394
>PRK10908 cell division protein FtsE; Provisional
Probab=96.26 E-value=0.0041 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 395
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.26 E-value=0.0038 Score=54.97 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH----hCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA----LRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~----lg~~~~d~ 124 (212)
+|..+.|+||+||||||+-|.|..- -|--++|.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 4789999999999999999999531 24445555
No 396
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.26 E-value=0.0069 Score=42.70 Aligned_cols=30 Identities=30% Similarity=0.228 Sum_probs=24.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHh---CCcEeehh
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSD 125 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D 125 (212)
+++.|..|+||||++..+|..+ |+..+-.|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6788999999999999999887 66665555
No 397
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0041 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 398
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0041 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.||..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999998654
No 399
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0036 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 47899999999999999999998654
No 400
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.0041 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999953
No 401
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.25 E-value=0.0042 Score=53.06 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 402
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.004 Score=54.01 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998653
No 403
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.0043 Score=52.07 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 404
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.02 Score=57.34 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.|++.++. +.+ ...++|+|++|+||||+++.||+.+++
T Consensus 27 ~L~~al~~--gRL-pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 27 ALTHALEQ--QRL-HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHh--CCC-ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444433 444 456789999999999999999999987
No 405
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.0042 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 406
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.25 E-value=0.0041 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998654
No 407
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.25 E-value=0.0045 Score=50.31 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 408
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.25 E-value=0.0041 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999864
No 409
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.24 E-value=0.0041 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 410
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.24 E-value=0.0044 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+.+|+|+|+||+|||++++.++.-|
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999999998654
No 411
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0039 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 412
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.24 E-value=0.0044 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 413
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0043 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998654
No 414
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0043 Score=53.74 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999654
No 415
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.23 E-value=0.0044 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998653
No 416
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0042 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 417
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0043 Score=53.36 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999865
No 418
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.0042 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
++..+.|+|++||||||+.+.|+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999999854
No 419
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.21 E-value=0.0043 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 420
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.21 E-value=0.0047 Score=51.94 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
.|+|+|++||||||+.+.|+..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999887764
No 421
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.21 E-value=0.0049 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999998654
No 422
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.21 E-value=0.0046 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999998653
No 423
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.20 E-value=0.0081 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
....|.|+|++|+||||+|+.+++.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CeEEEEEEcCCcCCcceeeeecccc
Confidence 4578999999999999999999976
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.20 E-value=0.007 Score=61.69 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++++.++-+.. -.+.+++|+|+||+|||++++.||+.+
T Consensus 180 ~ei~~~~~~l~r-~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 180 EEIRRTIQVLSR-RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred HHHHHHHHHHhc-CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 455544443333 246789999999999999999999986
No 425
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.005 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999998654
No 426
>PLN02924 thymidylate kinase
Probab=96.19 E-value=0.005 Score=53.19 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
.++.-|+|.|..||||||+++.|++.+...
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 347789999999999999999999998543
No 427
>PLN02796 D-glycerate 3-kinase
Probab=96.19 E-value=0.0078 Score=55.84 Aligned_cols=36 Identities=14% Similarity=-0.049 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~ 128 (212)
+..|.|+|++||||||+++.|+..+. ...+..|++.
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 45689999999999999999998874 3446667665
No 428
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.19 E-value=0.0048 Score=51.41 Aligned_cols=26 Identities=35% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999998643
No 429
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.19 E-value=0.0049 Score=50.61 Aligned_cols=26 Identities=42% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 430
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0047 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998543
No 431
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0046 Score=53.24 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999999754
No 432
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.011 Score=58.33 Aligned_cols=55 Identities=27% Similarity=0.291 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcccC------------CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 79 AVKKKAADISTELK------------GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 79 ~lk~~~~~~~~~l~------------~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
+.|+..+|+...|+ ++-++|+||||+|||.+||++|-..++||++. -+.++-..|
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 55666666644443 56799999999999999999999999998754 555555555
No 433
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.18 E-value=0.0041 Score=60.12 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=26.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
-.+.+.+|+|.|+||+|||++|+.|++..+
T Consensus 35 aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 345688999999999999999999998764
No 434
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0049 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 435
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.0095 Score=58.93 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|.||+|+||||+|+.+|+.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999999875
No 436
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.17 E-value=0.0048 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999998543
No 437
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0049 Score=53.07 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999999865
No 438
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0047 Score=53.44 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999964
No 439
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.17 E-value=0.0049 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999999998543
No 440
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0048 Score=54.09 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 441
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.0048 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998643
No 442
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.16 E-value=0.006 Score=62.39 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++++.++-+.. -...+++|+|+||||||++++.||+.+
T Consensus 194 ~ei~~~i~~l~r-~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 194 DEIRQMIDILLR-RRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred HHHHHHHHHHhc-CCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 344444433222 246799999999999999999999987
No 443
>PF13245 AAA_19: Part of AAA domain
Probab=96.16 E-value=0.0069 Score=44.04 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.3
Q ss_pred CcEEEEEccCCCCHH-HHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKT-HLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKT-Tvak~LA~~l 117 (212)
...++|.|+|||||| ++.+.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345666999999999 6666666554
No 444
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0044 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999999854
No 445
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.0049 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999864
No 446
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.15 E-value=0.005 Score=51.44 Aligned_cols=25 Identities=40% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999864
No 447
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.15 E-value=0.005 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999999998544
No 448
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.15 E-value=0.005 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 47899999999999999999998653
No 449
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.15 E-value=0.0049 Score=52.51 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
++..+.|+|++||||||+.+.|+-.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 450
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.0078 Score=59.65 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=25.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|.|++|+||||+|+.||+.+.+.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899999999999999999999884
No 451
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.15 E-value=0.0049 Score=53.34 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998654
No 452
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.15 E-value=0.0051 Score=51.88 Aligned_cols=32 Identities=28% Similarity=0.164 Sum_probs=26.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----CCcEee
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFD 123 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~~~~d 123 (212)
+|..+.|+|++||||||+.+.|+..+ |-.+++
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 68 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR 68 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence 47899999999999999999998654 444454
No 453
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.15 E-value=0.0051 Score=55.64 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=24.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
+.|+|+|++|+||||..+.| +.+||.++|
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD 30 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVD 30 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEc
Confidence 36899999999999999999 558987776
No 454
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.14 E-value=0.004 Score=54.93 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=28.0
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+.+.-+|.++.|+|++||||||+++.+++.+..
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345557999999999999999999999987653
No 455
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.14 E-value=0.0054 Score=55.90 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~ 126 (212)
++..|.|+|++|+||||++..||..+ | +.+++.|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 46789999999999999999999765 3 44567775
No 456
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.14 E-value=0.0053 Score=51.29 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|..+.|+|++||||||+-+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999999999863
No 457
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.005 Score=52.84 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999853
No 458
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.14 E-value=0.035 Score=56.24 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+++.++-+.. ..+.+++|+|+||+|||++++.||...
T Consensus 193 ~ei~~~i~iL~r-~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 193 KELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred HHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 444444443333 346789999999999999999999864
No 459
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.14 E-value=0.0049 Score=53.92 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 460
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.0072 Score=60.19 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=24.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
..++|+|++|+||||+++.||+.+++.
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 446899999999999999999999883
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.13 E-value=0.0046 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|+.+.|+|++||||||+.+.|+..+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999998544
No 462
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0052 Score=53.58 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999864
No 463
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0053 Score=52.74 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 47899999999999999999998643
No 464
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.12 E-value=0.0048 Score=61.33 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
+..++|+|++||||||+++.+|..+++.+++
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4569999999999999999999999876543
No 465
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0052 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|..+.|+|++||||||+.+.|+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999985
No 466
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.12 E-value=0.0054 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998643
No 467
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.0083 Score=59.44 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+|++|+||||+++.||+.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999999999987
No 468
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.0057 Score=57.18 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C---CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g---~~~~d~D~l 127 (212)
++..++|+||+|+||||++..||..+ | +.++..|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 47899999999999999999999653 3 356777776
No 469
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.11 E-value=0.0053 Score=53.10 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998654
No 470
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.11 E-value=0.0054 Score=48.98 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 47889999999999999999997643
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.11 E-value=0.0078 Score=49.32 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=20.4
Q ss_pred cccCCcE-EEEEccCCCCHHHHHHHHHHHh
Q 028227 89 TELKGTS-VFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 89 ~~l~~~~-I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+.... .+|.||||+|||++...++..+
T Consensus 12 ~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 12 SALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 4455454 7889999999997666666655
No 472
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.10 E-value=0.0047 Score=55.44 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----CCcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~~~~d~D~ 126 (212)
+|..+.|+|-+||||||+||.|..-+ |-.+++..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 47899999999999999999998644 455666544
No 473
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.09 E-value=0.006 Score=54.29 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=28.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~ 126 (212)
++.|.|+|++|+||||++..||..+ | ..++|+|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 5789999999999999999998766 4 34578885
No 474
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.005 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999998543
No 475
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0056 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998643
No 476
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.09 E-value=0.0058 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999999854
No 477
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.09 E-value=0.0056 Score=52.49 Aligned_cols=25 Identities=40% Similarity=0.340 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.09 E-value=0.0047 Score=55.14 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----CCcEeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~~~~d~D~l~ 128 (212)
+|..+.|+||+||||||+-|.|+.-+ |-.++|.-++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 47889999999999999999999855 45667776554
No 479
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.09 E-value=0.0058 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999854
No 480
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0047 Score=57.03 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=35.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G 133 (212)
.++-|+|+|.||+|||-+|+++|......|+. ..+++.++.|
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG 261 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 261 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhc
Confidence 36889999999999999999999999888864 3566776666
No 481
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.08 E-value=0.005 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999999875
No 482
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.08 E-value=0.0058 Score=51.43 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999854
No 483
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.08 E-value=0.0051 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|..+.|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999999986
No 484
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0058 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998543
No 485
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0057 Score=52.51 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999863
No 486
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0056 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999864
No 487
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0055 Score=54.16 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998644
No 488
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0055 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+++.|+..+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999999998754
No 489
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0058 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998643
No 490
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.0087 Score=58.93 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
..++|.|++|+||||+|+.||+.+++.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 457899999999999999999999874
No 491
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.0057 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999854
No 492
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.05 E-value=0.0058 Score=52.85 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 493
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.04 E-value=0.0088 Score=46.72 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~ 126 (212)
|++.|.+|+||||++..+|..+ |. ..+|+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 7899999999999999998766 54 4467764
No 494
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0061 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999999754
No 495
>PHA02624 large T antigen; Provisional
Probab=96.04 E-value=0.0086 Score=59.40 Aligned_cols=37 Identities=22% Similarity=0.046 Sum_probs=30.3
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
++..+++.++|.||||+||||+++.|++.+|-..++.
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 3445568999999999999999999999995555554
No 496
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.006 Score=53.43 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998644
No 497
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.0059 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999854
No 498
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.03 E-value=0.0061 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.200 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.||..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998755
No 499
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0056 Score=52.16 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999999853
No 500
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.03 E-value=0.0079 Score=52.82 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=29.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehh
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D 125 (212)
+..++..++|.|+||+|||+++-.+|... .+.|++.+
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 66678999999999999999999886532 34566654
Done!