Query 028227
Match_columns 212
No_of_seqs 192 out of 1532
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 99.9 4.9E-22 1.7E-26 172.2 11.9 124 77-201 32-158 (250)
2 3trf_A Shikimate kinase, SK; a 99.9 1.7E-21 6E-26 156.2 11.7 109 93-202 5-114 (185)
3 3vaa_A Shikimate kinase, SK; s 99.8 3.4E-21 1.1E-25 158.0 10.5 105 92-197 24-129 (199)
4 2iyv_A Shikimate kinase, SK; t 99.8 1.7E-19 6E-24 144.7 12.4 110 94-204 3-113 (184)
5 1zuh_A Shikimate kinase; alpha 99.8 3.1E-19 1.1E-23 141.6 11.6 105 94-203 8-115 (168)
6 1via_A Shikimate kinase; struc 99.8 8.7E-19 3E-23 140.1 12.5 105 94-203 5-111 (175)
7 2pt5_A Shikimate kinase, SK; a 99.8 2.6E-18 8.9E-23 135.4 11.6 109 95-204 2-112 (168)
8 1e6c_A Shikimate kinase; phosp 99.8 1.8E-18 6.1E-23 136.7 10.5 107 94-202 3-111 (173)
9 1kag_A SKI, shikimate kinase I 99.8 5.2E-18 1.8E-22 134.3 11.2 110 93-203 4-115 (173)
10 1knq_A Gluconate kinase; ALFA/ 99.5 4.3E-13 1.5E-17 106.5 11.6 105 91-202 6-121 (175)
11 3fdi_A Uncharacterized protein 99.5 1.3E-13 4.6E-18 114.7 9.0 106 90-202 3-134 (201)
12 1zd8_A GTP:AMP phosphotransfer 99.4 2.9E-13 9.9E-18 112.5 8.7 105 92-197 6-119 (227)
13 1qhx_A CPT, protein (chloramph 99.4 3.1E-13 1.1E-17 107.1 8.3 107 92-198 2-125 (178)
14 3lw7_A Adenylate kinase relate 99.4 3.6E-13 1.2E-17 104.4 7.9 108 94-207 2-124 (179)
15 3be4_A Adenylate kinase; malar 99.4 1.6E-13 5.6E-18 113.7 6.0 101 92-197 4-123 (217)
16 1y63_A LMAJ004144AAA protein; 99.4 9.7E-14 3.3E-18 112.3 2.9 40 92-131 9-49 (184)
17 1kht_A Adenylate kinase; phosp 99.4 3.4E-12 1.2E-16 101.3 11.5 106 92-199 2-128 (192)
18 3cm0_A Adenylate kinase; ATP-b 99.4 6.8E-13 2.3E-17 105.8 6.3 101 92-197 3-117 (186)
19 3hdt_A Putative kinase; struct 99.4 8.6E-13 2.9E-17 112.3 7.2 105 93-203 14-155 (223)
20 2cdn_A Adenylate kinase; phosp 99.4 8.3E-13 2.8E-17 107.4 6.5 105 89-197 16-138 (201)
21 4eun_A Thermoresistant glucoki 99.3 1.6E-11 5.5E-16 100.2 13.3 104 92-202 28-142 (200)
22 1zak_A Adenylate kinase; ATP:A 99.3 3.2E-12 1.1E-16 105.7 8.4 100 93-197 5-120 (222)
23 2c95_A Adenylate kinase 1; tra 99.3 5.6E-12 1.9E-16 100.8 9.5 103 92-197 8-124 (196)
24 3iij_A Coilin-interacting nucl 99.3 2.3E-13 7.9E-18 108.7 1.1 40 92-131 10-49 (180)
25 1ly1_A Polynucleotide kinase; 99.3 6.3E-12 2.2E-16 98.9 8.5 102 93-197 2-117 (181)
26 1qf9_A UMP/CMP kinase, protein 99.3 5.4E-12 1.8E-16 100.1 7.9 102 93-197 6-122 (194)
27 1aky_A Adenylate kinase; ATP:A 99.3 5E-12 1.7E-16 104.3 7.6 101 93-197 4-123 (220)
28 3a8t_A Adenylate isopentenyltr 99.3 9.1E-13 3.1E-17 119.3 3.4 84 92-176 39-142 (339)
29 1tev_A UMP-CMP kinase; ploop, 99.3 6.5E-12 2.2E-16 99.8 7.6 41 92-132 2-42 (196)
30 2bwj_A Adenylate kinase 5; pho 99.3 1.4E-11 4.6E-16 98.8 9.5 102 93-197 12-127 (199)
31 2grj_A Dephospho-COA kinase; T 99.3 1.2E-11 4E-16 102.7 9.4 58 89-147 8-65 (192)
32 2rhm_A Putative kinase; P-loop 99.3 3.3E-11 1.1E-15 96.1 10.8 42 92-133 4-45 (193)
33 1ak2_A Adenylate kinase isoenz 99.3 9.4E-12 3.2E-16 104.1 7.5 102 92-197 15-134 (233)
34 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 3.5E-11 1.2E-15 102.8 8.0 95 93-197 4-111 (260)
35 1e4v_A Adenylate kinase; trans 99.2 5.1E-11 1.7E-15 98.0 8.3 37 95-131 2-38 (214)
36 3fb4_A Adenylate kinase; psych 99.2 5.2E-11 1.8E-15 97.4 8.1 38 95-132 2-39 (216)
37 2xb4_A Adenylate kinase; ATP-b 99.2 6.7E-11 2.3E-15 98.6 8.5 37 95-131 2-38 (223)
38 3t61_A Gluconokinase; PSI-biol 99.2 5E-11 1.7E-15 96.9 7.3 98 93-197 18-122 (202)
39 3dl0_A Adenylate kinase; phosp 99.2 6.5E-11 2.2E-15 97.0 7.8 37 95-131 2-38 (216)
40 2h92_A Cytidylate kinase; ross 99.2 2.8E-12 9.6E-17 105.2 -0.5 39 92-130 2-40 (219)
41 2vli_A Antibiotic resistance p 99.1 1.3E-11 4.6E-16 97.8 2.7 34 92-125 4-38 (183)
42 3tlx_A Adenylate kinase 2; str 99.1 1.6E-10 5.6E-15 97.9 9.2 52 81-132 16-68 (243)
43 2axn_A 6-phosphofructo-2-kinas 99.1 5E-11 1.7E-15 112.5 6.6 102 93-194 35-153 (520)
44 1ukz_A Uridylate kinase; trans 99.1 7E-10 2.4E-14 89.8 12.5 39 93-131 15-53 (203)
45 3umf_A Adenylate kinase; rossm 99.1 6.5E-10 2.2E-14 94.3 11.4 108 92-203 28-150 (217)
46 1m7g_A Adenylylsulfate kinase; 99.1 1.5E-10 5.2E-15 95.2 7.1 102 92-199 24-145 (211)
47 1uf9_A TT1252 protein; P-loop, 99.1 9.1E-11 3.1E-15 94.2 5.6 40 92-132 7-46 (203)
48 2if2_A Dephospho-COA kinase; a 99.1 5.2E-11 1.8E-15 96.5 4.0 38 94-132 2-39 (204)
49 1nks_A Adenylate kinase; therm 99.1 1.3E-09 4.6E-14 86.1 11.9 39 94-132 2-45 (194)
50 2pbr_A DTMP kinase, thymidylat 99.1 1.6E-10 5.6E-15 91.8 6.3 32 95-126 2-36 (195)
51 2p5t_B PEZT; postsegregational 99.1 4.3E-10 1.5E-14 95.5 8.8 99 92-195 31-146 (253)
52 3uie_A Adenylyl-sulfate kinase 99.1 8.9E-10 3E-14 89.8 10.2 104 92-201 24-139 (200)
53 1vht_A Dephospho-COA kinase; s 99.0 1.1E-09 3.7E-14 89.9 10.6 52 93-145 4-57 (218)
54 4e22_A Cytidylate kinase; P-lo 99.0 3E-10 1E-14 96.7 7.4 39 92-130 26-64 (252)
55 3sr0_A Adenylate kinase; phosp 99.0 4.2E-10 1.4E-14 94.4 8.0 38 94-131 1-38 (206)
56 1jjv_A Dephospho-COA kinase; P 99.0 4.1E-10 1.4E-14 91.5 7.7 53 94-147 3-57 (206)
57 3kb2_A SPBC2 prophage-derived 99.0 5.3E-10 1.8E-14 87.2 8.0 38 94-131 2-39 (173)
58 2pez_A Bifunctional 3'-phospho 99.0 7E-10 2.4E-14 88.5 8.8 104 92-201 4-121 (179)
59 1q3t_A Cytidylate kinase; nucl 99.0 1.8E-11 6.2E-16 102.5 -1.3 40 91-130 14-53 (236)
60 1cke_A CK, MSSA, protein (cyti 99.0 1.8E-10 6.1E-15 94.5 4.7 39 93-131 5-43 (227)
61 1uj2_A Uridine-cytidine kinase 99.0 1.2E-10 4.1E-15 98.6 3.7 38 92-129 21-68 (252)
62 2yvu_A Probable adenylyl-sulfa 99.0 6.5E-10 2.2E-14 89.2 7.8 101 91-197 11-124 (186)
63 3gmt_A Adenylate kinase; ssgci 99.0 4E-10 1.4E-14 96.9 6.8 101 93-197 8-122 (230)
64 1ltq_A Polynucleotide kinase; 99.0 8.9E-10 3E-14 94.5 8.6 101 94-197 3-117 (301)
65 3crm_A TRNA delta(2)-isopenten 99.0 1.9E-10 6.5E-15 103.3 4.3 79 94-174 6-104 (323)
66 2ze6_A Isopentenyl transferase 99.0 2.3E-10 7.8E-15 97.8 4.2 99 94-196 2-127 (253)
67 1x6v_B Bifunctional 3'-phospho 99.0 2E-09 6.8E-14 104.3 10.4 104 91-198 50-164 (630)
68 3ake_A Cytidylate kinase; CMP 98.9 3.8E-09 1.3E-13 85.0 9.9 37 95-131 4-40 (208)
69 2v54_A DTMP kinase, thymidylat 98.9 3.6E-10 1.2E-14 91.0 3.4 35 92-126 3-38 (204)
70 3cr8_A Sulfate adenylyltranfer 98.9 1.2E-09 4.2E-14 104.1 7.0 103 92-198 368-481 (552)
71 1bif_A 6-phosphofructo-2-kinas 98.9 2.4E-10 8.3E-15 105.6 1.8 68 93-160 39-111 (469)
72 2bbw_A Adenylate kinase 4, AK4 98.9 3.4E-09 1.2E-13 89.0 8.2 39 92-130 26-64 (246)
73 1gvn_B Zeta; postsegregational 98.9 6.3E-09 2.2E-13 90.7 9.7 103 92-197 32-149 (287)
74 2f6r_A COA synthase, bifunctio 98.9 1.9E-08 6.4E-13 87.2 12.2 39 93-132 75-113 (281)
75 3r20_A Cytidylate kinase; stru 98.8 1.1E-08 3.9E-13 87.6 9.4 40 92-131 8-47 (233)
76 2wwf_A Thymidilate kinase, put 98.8 4E-09 1.4E-13 85.3 6.0 34 92-125 9-42 (212)
77 2jaq_A Deoxyguanosine kinase; 98.8 4.2E-09 1.4E-13 84.2 5.9 29 95-123 2-30 (205)
78 3zvl_A Bifunctional polynucleo 98.8 2.1E-09 7E-14 98.3 4.4 87 92-197 257-348 (416)
79 2plr_A DTMP kinase, probable t 98.8 2.8E-08 9.7E-13 79.7 10.4 33 91-123 2-36 (213)
80 2bdt_A BH3686; alpha-beta prot 98.8 1.2E-08 4E-13 81.8 7.8 38 93-130 2-40 (189)
81 2ga8_A Hypothetical 39.9 kDa p 98.8 3.9E-10 1.4E-14 102.8 -1.9 64 94-159 25-108 (359)
82 2z0h_A DTMP kinase, thymidylat 98.7 1.1E-08 3.6E-13 81.7 5.7 32 95-126 2-36 (197)
83 1nn5_A Similar to deoxythymidy 98.7 5E-09 1.7E-13 84.7 3.3 33 92-124 8-40 (215)
84 1m8p_A Sulfate adenylyltransfe 98.7 3.9E-08 1.3E-12 94.0 9.5 101 92-197 395-507 (573)
85 2qor_A Guanylate kinase; phosp 98.7 6.2E-09 2.1E-13 85.0 2.9 26 92-117 11-36 (204)
86 4i1u_A Dephospho-COA kinase; s 98.7 2.3E-08 7.9E-13 84.7 6.3 55 94-149 10-66 (210)
87 2gks_A Bifunctional SAT/APS ki 98.6 1E-07 3.4E-12 90.6 9.8 99 93-198 372-482 (546)
88 3d3q_A TRNA delta(2)-isopenten 98.6 2.3E-08 7.9E-13 90.4 4.8 100 94-197 8-126 (340)
89 1zp6_A Hypothetical protein AT 98.6 1.9E-07 6.6E-12 74.3 8.3 39 92-130 8-48 (191)
90 2qt1_A Nicotinamide riboside k 98.6 1E-07 3.5E-12 77.5 6.5 37 93-129 21-58 (207)
91 1g8f_A Sulfate adenylyltransfe 98.4 6.3E-07 2.1E-11 84.9 8.4 77 92-194 394-477 (511)
92 3exa_A TRNA delta(2)-isopenten 98.4 8.6E-07 2.9E-11 79.7 8.4 83 91-173 1-101 (322)
93 4eaq_A DTMP kinase, thymidylat 98.3 8.3E-07 2.8E-11 74.7 6.9 34 91-124 24-59 (229)
94 3m6a_A ATP-dependent protease 98.3 6.7E-07 2.3E-11 84.4 5.1 78 47-124 41-139 (543)
95 3c8u_A Fructokinase; YP_612366 98.2 1.7E-06 5.8E-11 70.8 5.7 48 80-127 8-61 (208)
96 3tau_A Guanylate kinase, GMP k 98.2 1.7E-06 5.7E-11 71.0 4.8 27 92-118 7-33 (208)
97 1kgd_A CASK, peripheral plasma 98.1 2.2E-06 7.5E-11 68.7 5.2 27 91-117 3-29 (180)
98 3foz_A TRNA delta(2)-isopenten 98.1 4.6E-06 1.6E-10 74.8 7.2 80 93-172 10-107 (316)
99 4b4t_J 26S protease regulatory 98.1 7.2E-06 2.4E-10 75.7 8.5 34 92-125 181-214 (405)
100 4b4t_K 26S protease regulatory 98.1 4.6E-06 1.6E-10 77.3 6.6 34 92-125 205-238 (428)
101 3eph_A TRNA isopentenyltransfe 98.1 4.6E-06 1.6E-10 77.1 6.4 81 93-173 2-100 (409)
102 1p5z_B DCK, deoxycytidine kina 98.1 3.2E-06 1.1E-10 71.5 4.8 32 92-123 23-55 (263)
103 1lv7_A FTSH; alpha/beta domain 98.0 4.3E-06 1.5E-10 70.0 5.1 33 93-125 45-77 (257)
104 4b4t_L 26S protease subunit RP 98.0 7.3E-06 2.5E-10 76.2 6.5 34 92-125 214-247 (437)
105 4b4t_H 26S protease regulatory 98.0 1.3E-05 4.5E-10 75.3 8.1 34 92-125 242-275 (467)
106 3asz_A Uridine kinase; cytidin 98.0 4.5E-06 1.5E-10 67.6 4.2 38 92-129 5-44 (211)
107 4b4t_M 26S protease regulatory 98.0 1.1E-05 3.7E-10 75.0 7.3 34 92-125 214-247 (434)
108 3t15_A Ribulose bisphosphate c 97.9 5.8E-06 2E-10 71.6 4.4 33 93-125 36-68 (293)
109 4b4t_I 26S protease regulatory 97.9 1.1E-05 3.7E-10 75.2 6.5 34 92-125 215-248 (437)
110 3tr0_A Guanylate kinase, GMP k 97.9 2E-05 6.9E-10 63.0 7.2 27 92-118 6-32 (205)
111 3eie_A Vacuolar protein sortin 97.9 1.8E-05 6.2E-10 68.9 7.2 33 93-125 51-83 (322)
112 3ec2_A DNA replication protein 97.9 3.1E-05 1.1E-09 61.3 7.4 53 79-131 21-82 (180)
113 1g41_A Heat shock protein HSLU 97.9 9.9E-06 3.4E-10 75.5 5.1 52 91-143 48-102 (444)
114 4edh_A DTMP kinase, thymidylat 97.9 0.00022 7.6E-09 59.5 13.0 29 90-118 3-31 (213)
115 3cf0_A Transitional endoplasmi 97.9 3.4E-05 1.2E-09 66.7 8.2 42 92-133 48-91 (301)
116 1a7j_A Phosphoribulokinase; tr 97.9 3.8E-06 1.3E-10 73.3 1.9 37 93-129 5-46 (290)
117 2qz4_A Paraplegin; AAA+, SPG7, 97.9 1.2E-05 3.9E-10 66.6 4.8 33 92-124 38-70 (262)
118 3v9p_A DTMP kinase, thymidylat 97.8 2.8E-05 9.5E-10 66.0 6.9 27 91-117 23-49 (227)
119 3a00_A Guanylate kinase, GMP k 97.8 1E-05 3.4E-10 65.0 3.9 26 93-118 1-26 (186)
120 3hws_A ATP-dependent CLP prote 97.8 1.1E-05 3.7E-10 71.3 4.4 35 92-126 50-84 (363)
121 3h4m_A Proteasome-activating n 97.8 2.9E-05 9.8E-10 65.4 6.8 33 92-124 50-82 (285)
122 3b9p_A CG5977-PA, isoform A; A 97.8 1.7E-05 5.7E-10 67.4 4.6 32 93-124 54-85 (297)
123 3lv8_A DTMP kinase, thymidylat 97.8 0.0002 6.7E-09 61.1 11.3 30 89-118 23-52 (236)
124 1jbk_A CLPB protein; beta barr 97.8 5.3E-05 1.8E-09 58.2 6.6 26 92-117 42-67 (195)
125 2c9o_A RUVB-like 1; hexameric 97.7 3.7E-05 1.3E-09 70.5 6.5 37 89-125 59-97 (456)
126 1ofh_A ATP-dependent HSL prote 97.7 2.1E-05 7.1E-10 66.4 4.4 33 92-124 49-81 (310)
127 2p65_A Hypothetical protein PF 97.7 4E-05 1.4E-09 59.2 5.7 38 79-117 30-67 (187)
128 1um8_A ATP-dependent CLP prote 97.7 2E-05 6.9E-10 69.7 4.4 34 92-125 71-104 (376)
129 1d2n_A N-ethylmaleimide-sensit 97.7 2.1E-05 7.3E-10 66.3 4.1 33 92-124 63-95 (272)
130 3bos_A Putative DNA replicatio 97.7 4.6E-05 1.6E-09 61.4 5.6 37 92-128 51-92 (242)
131 2jeo_A Uridine-cytidine kinase 97.7 3.1E-05 1E-09 64.8 4.6 37 92-128 24-70 (245)
132 3n70_A Transport activator; si 97.7 4.2E-05 1.4E-09 59.2 4.9 41 80-122 13-56 (145)
133 2r62_A Cell division protease 97.7 2.6E-05 9E-10 65.2 3.8 33 93-125 44-76 (268)
134 1xwi_A SKD1 protein; VPS4B, AA 97.7 8.7E-05 3E-09 65.1 7.2 31 93-123 45-76 (322)
135 2ce7_A Cell division protein F 97.6 9.5E-05 3.2E-09 69.2 7.6 33 93-125 49-81 (476)
136 3syl_A Protein CBBX; photosynt 97.6 2.9E-05 1E-09 66.0 3.8 26 92-117 66-91 (309)
137 2qp9_X Vacuolar protein sortin 97.6 4E-05 1.4E-09 68.2 4.4 33 93-125 84-116 (355)
138 2j41_A Guanylate kinase; GMP, 97.6 3.1E-05 1E-09 61.8 3.3 26 92-117 5-30 (207)
139 2w58_A DNAI, primosome compone 97.6 0.00013 4.3E-09 58.5 6.8 38 94-131 55-97 (202)
140 2x8a_A Nuclear valosin-contain 97.6 5.2E-05 1.8E-09 65.3 4.6 32 93-124 44-75 (274)
141 1ixz_A ATP-dependent metallopr 97.6 5.5E-05 1.9E-09 63.0 4.6 33 93-125 49-81 (254)
142 3vfd_A Spastin; ATPase, microt 97.6 5.5E-05 1.9E-09 67.6 4.8 32 93-124 148-179 (389)
143 3d8b_A Fidgetin-like protein 1 97.6 5.4E-05 1.8E-09 67.2 4.7 33 92-124 116-148 (357)
144 4gp7_A Metallophosphoesterase; 97.6 0.00014 4.8E-09 57.8 6.5 38 92-131 8-45 (171)
145 3uk6_A RUVB-like 2; hexameric 97.6 0.0001 3.4E-09 64.2 6.1 34 89-122 66-101 (368)
146 3cf2_A TER ATPase, transitiona 97.5 0.00017 5.8E-09 71.7 8.3 34 92-125 237-270 (806)
147 3co5_A Putative two-component 97.5 2.4E-05 8E-10 60.6 1.6 42 79-123 15-56 (143)
148 3pfi_A Holliday junction ATP-d 97.5 6.3E-05 2.2E-09 65.0 4.4 33 93-125 55-87 (338)
149 3pvs_A Replication-associated 97.5 0.0001 3.5E-09 68.1 5.9 45 77-125 38-82 (447)
150 2chg_A Replication factor C sm 97.5 0.00012 4E-09 57.6 5.3 25 93-117 38-62 (226)
151 1sxj_A Activator 1 95 kDa subu 97.5 9.6E-05 3.3E-09 68.9 5.6 33 93-125 77-109 (516)
152 1sq5_A Pantothenate kinase; P- 97.5 7E-05 2.4E-09 65.3 4.3 36 92-127 79-121 (308)
153 2qby_B CDC6 homolog 3, cell di 97.5 0.00018 6E-09 62.6 6.5 34 92-125 44-88 (384)
154 4hlc_A DTMP kinase, thymidylat 97.5 0.00071 2.4E-08 56.0 9.8 29 94-122 3-33 (205)
155 1iy2_A ATP-dependent metallopr 97.4 0.0001 3.5E-09 62.5 4.6 33 93-125 73-105 (278)
156 1rz3_A Hypothetical protein rb 97.4 0.00023 8E-09 57.7 6.2 37 92-128 21-62 (201)
157 1l8q_A Chromosomal replication 97.4 0.0002 6.9E-09 61.8 6.2 38 93-130 37-79 (324)
158 2zan_A Vacuolar protein sortin 97.4 0.00026 8.8E-09 64.9 7.2 40 92-131 166-208 (444)
159 1in4_A RUVB, holliday junction 97.4 0.00011 3.9E-09 64.4 4.5 29 94-122 52-80 (334)
160 3pxg_A Negative regulator of g 97.4 0.0002 6.8E-09 66.1 6.3 49 78-127 187-245 (468)
161 2kjq_A DNAA-related protein; s 97.4 8.4E-05 2.9E-09 58.5 3.1 36 92-127 35-75 (149)
162 3cf2_A TER ATPase, transitiona 97.3 0.00021 7E-09 71.1 5.9 41 93-133 511-553 (806)
163 2v1u_A Cell division control p 97.3 0.00013 4.4E-09 63.0 3.7 34 92-125 43-85 (387)
164 2r44_A Uncharacterized protein 97.3 9.4E-05 3.2E-09 64.0 2.9 31 93-123 46-76 (331)
165 2ocp_A DGK, deoxyguanosine kin 97.3 0.00018 6E-09 59.8 4.3 31 92-122 1-32 (241)
166 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00014 4.7E-09 62.1 3.6 30 93-122 38-67 (324)
167 3pxi_A Negative regulator of g 97.3 0.00029 9.8E-09 68.4 6.3 36 91-126 199-244 (758)
168 1njg_A DNA polymerase III subu 97.3 0.00037 1.3E-08 55.0 5.6 27 93-119 45-71 (250)
169 1fnn_A CDC6P, cell division co 97.2 0.00044 1.5E-08 59.9 6.4 30 95-124 46-79 (389)
170 1gtv_A TMK, thymidylate kinase 97.2 7.1E-05 2.4E-09 60.1 1.3 24 95-118 2-25 (214)
171 1ye8_A Protein THEP1, hypothet 97.2 0.0002 6.8E-09 58.0 3.9 27 95-121 2-28 (178)
172 2qby_A CDC6 homolog 1, cell di 97.2 0.00031 1.1E-08 60.4 5.2 34 92-125 44-83 (386)
173 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00025 8.6E-09 66.7 5.0 33 93-125 64-96 (499)
174 3ney_A 55 kDa erythrocyte memb 97.2 0.00022 7.6E-09 59.4 4.1 30 89-118 15-44 (197)
175 3hjn_A DTMP kinase, thymidylat 97.2 0.0039 1.3E-07 51.1 11.6 27 96-122 3-32 (197)
176 3hu3_A Transitional endoplasmi 97.2 0.00023 8E-09 66.5 4.4 34 92-125 237-270 (489)
177 2qgz_A Helicase loader, putati 97.2 0.00052 1.8E-08 60.0 6.4 40 93-132 152-197 (308)
178 4fcw_A Chaperone protein CLPB; 97.2 0.00028 9.5E-09 59.8 4.5 24 94-117 48-71 (311)
179 1lvg_A Guanylate kinase, GMP k 97.2 0.0002 6.9E-09 58.2 3.4 26 92-117 3-28 (198)
180 1znw_A Guanylate kinase, GMP k 97.2 0.00031 1.1E-08 57.1 4.5 26 92-117 19-44 (207)
181 2bjv_A PSP operon transcriptio 97.2 0.00044 1.5E-08 57.8 5.5 26 93-118 29-54 (265)
182 3lnc_A Guanylate kinase, GMP k 97.2 0.00019 6.4E-09 59.1 2.9 26 92-117 26-52 (231)
183 3u61_B DNA polymerase accessor 97.1 0.00063 2.1E-08 58.4 5.8 33 93-125 48-80 (324)
184 2qmh_A HPR kinase/phosphorylas 97.1 0.00026 8.8E-09 60.0 3.2 36 92-128 33-68 (205)
185 1dek_A Deoxynucleoside monopho 97.1 0.00042 1.4E-08 59.4 4.6 35 94-128 2-36 (241)
186 3te6_A Regulatory protein SIR3 97.1 0.00041 1.4E-08 61.8 4.6 26 92-117 44-69 (318)
187 1ypw_A Transitional endoplasmi 97.1 0.00027 9.3E-09 69.7 3.7 34 92-125 237-270 (806)
188 3tqc_A Pantothenate kinase; bi 97.1 0.00079 2.7E-08 60.0 6.3 35 94-128 93-134 (321)
189 1z6g_A Guanylate kinase; struc 97.0 0.00035 1.2E-08 57.7 3.6 26 92-117 22-47 (218)
190 1tue_A Replication protein E1; 97.0 0.00043 1.5E-08 58.9 4.0 32 92-123 57-88 (212)
191 2z4s_A Chromosomal replication 97.0 0.00084 2.9E-08 61.5 6.2 37 93-129 130-173 (440)
192 1odf_A YGR205W, hypothetical 3 97.0 0.00035 1.2E-08 61.0 3.4 37 92-128 30-74 (290)
193 2chq_A Replication factor C sm 97.0 0.00065 2.2E-08 57.2 5.0 23 95-117 40-62 (319)
194 2ehv_A Hypothetical protein PH 97.0 0.00045 1.5E-08 56.3 3.6 25 90-114 27-51 (251)
195 1sxj_C Activator 1 40 kDa subu 96.9 0.00085 2.9E-08 58.4 5.2 23 96-118 49-71 (340)
196 1s96_A Guanylate kinase, GMP k 96.9 0.00059 2E-08 57.1 4.0 27 92-118 15-41 (219)
197 4a74_A DNA repair and recombin 96.9 0.00051 1.7E-08 55.3 3.4 28 89-116 21-48 (231)
198 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0007 2.4E-08 54.2 4.1 36 90-125 20-60 (235)
199 1htw_A HI0065; nucleotide-bind 96.9 0.00069 2.3E-08 54.1 3.8 26 92-117 32-57 (158)
200 1svm_A Large T antigen; AAA+ f 96.9 0.00084 2.9E-08 61.0 4.8 32 92-123 168-199 (377)
201 2qen_A Walker-type ATPase; unk 96.8 0.00089 3E-08 56.8 4.3 35 93-127 31-65 (350)
202 1sxj_D Activator 1 41 kDa subu 96.8 0.0011 3.8E-08 56.8 4.7 25 94-118 59-83 (353)
203 3aez_A Pantothenate kinase; tr 96.8 0.00083 2.8E-08 59.2 4.0 36 92-127 89-131 (312)
204 1ypw_A Transitional endoplasmi 96.8 0.00035 1.2E-08 68.9 1.7 33 92-124 510-542 (806)
205 1iqp_A RFCS; clamp loader, ext 96.8 0.0016 5.6E-08 54.9 5.6 25 94-118 47-71 (327)
206 1qvr_A CLPB protein; coiled co 96.8 0.0013 4.3E-08 64.9 5.5 34 92-125 190-233 (854)
207 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0009 3.1E-08 64.6 4.3 30 95-124 490-519 (758)
208 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0019 6.6E-08 62.3 6.6 39 78-117 193-231 (758)
209 1ojl_A Transcriptional regulat 96.8 0.0013 4.5E-08 57.1 5.0 37 79-117 13-49 (304)
210 1jr3_A DNA polymerase III subu 96.7 0.0021 7.3E-08 55.4 6.2 27 93-119 38-64 (373)
211 4tmk_A Protein (thymidylate ki 96.7 0.0011 3.7E-08 55.5 4.1 27 91-117 1-27 (213)
212 3ch4_B Pmkase, phosphomevalona 96.7 0.0017 5.7E-08 54.7 5.2 38 93-130 11-51 (202)
213 2i3b_A HCR-ntpase, human cance 96.7 0.00099 3.4E-08 54.6 3.6 25 93-117 1-25 (189)
214 1g8p_A Magnesium-chelatase 38 96.7 0.0005 1.7E-08 59.1 1.8 26 93-118 45-70 (350)
215 1ex7_A Guanylate kinase; subst 96.7 0.0011 3.6E-08 54.6 3.7 24 94-117 2-25 (186)
216 3tmk_A Thymidylate kinase; pho 96.7 0.0012 4.1E-08 55.5 4.1 28 92-119 4-31 (216)
217 3tif_A Uncharacterized ABC tra 96.7 0.00083 2.8E-08 56.6 3.1 26 92-117 30-55 (235)
218 2cvh_A DNA repair and recombin 96.7 0.0012 4.1E-08 52.8 3.9 38 89-126 16-55 (220)
219 2v9p_A Replication protein E1; 96.7 0.0011 3.9E-08 58.6 4.0 26 92-117 125-150 (305)
220 2pcj_A ABC transporter, lipopr 96.7 0.00092 3.2E-08 55.8 3.1 26 92-117 29-54 (224)
221 3ld9_A DTMP kinase, thymidylat 96.6 0.0014 4.6E-08 55.5 4.0 28 92-119 20-47 (223)
222 1n0w_A DNA repair protein RAD5 96.6 0.0013 4.6E-08 53.3 3.6 28 89-116 20-47 (243)
223 1sxj_B Activator 1 37 kDa subu 96.6 0.0025 8.5E-08 53.7 5.3 23 95-117 44-66 (323)
224 1sxj_E Activator 1 40 kDa subu 96.6 0.0032 1.1E-07 54.3 6.1 23 95-117 38-60 (354)
225 2cbz_A Multidrug resistance-as 96.6 0.0011 3.8E-08 55.9 3.1 25 92-116 30-54 (237)
226 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0015 5.2E-08 55.4 3.6 25 92-116 28-52 (250)
227 2eyu_A Twitching motility prot 96.5 0.0017 5.8E-08 55.6 3.9 28 90-117 22-49 (261)
228 1rj9_A FTSY, signal recognitio 96.5 0.0017 5.8E-08 57.0 4.0 26 92-117 101-126 (304)
229 1b0u_A Histidine permease; ABC 96.5 0.0013 4.4E-08 56.4 3.1 26 92-117 31-56 (262)
230 4g1u_C Hemin import ATP-bindin 96.5 0.0013 4.4E-08 56.6 3.1 25 92-116 36-60 (266)
231 1ji0_A ABC transporter; ATP bi 96.5 0.0013 4.5E-08 55.4 3.1 26 92-117 31-56 (240)
232 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0011 3.9E-08 62.2 2.9 27 92-118 40-66 (500)
233 1g6h_A High-affinity branched- 96.5 0.0013 4.5E-08 56.0 3.1 26 92-117 32-57 (257)
234 2ff7_A Alpha-hemolysin translo 96.5 0.0013 4.6E-08 55.8 3.1 26 92-117 34-59 (247)
235 2pze_A Cystic fibrosis transme 96.5 0.0014 4.9E-08 54.9 3.1 26 92-117 33-58 (229)
236 3gfo_A Cobalt import ATP-bindi 96.5 0.0014 4.7E-08 56.9 3.1 26 92-117 33-58 (275)
237 1mv5_A LMRA, multidrug resista 96.5 0.0014 4.6E-08 55.4 3.0 25 92-116 27-51 (243)
238 3b9q_A Chloroplast SRP recepto 96.5 0.0019 6.4E-08 56.6 4.0 26 92-117 99-124 (302)
239 2zu0_C Probable ATP-dependent 96.5 0.0017 5.8E-08 55.7 3.6 25 92-116 45-69 (267)
240 2fna_A Conserved hypothetical 96.5 0.004 1.4E-07 52.8 5.9 32 94-125 31-64 (357)
241 1cr0_A DNA primase/helicase; R 96.5 0.002 6.9E-08 54.8 4.0 29 89-117 31-59 (296)
242 1w5s_A Origin recognition comp 96.4 0.0026 8.7E-08 55.6 4.7 26 92-117 49-76 (412)
243 2vp4_A Deoxynucleoside kinase; 96.4 0.0012 4.2E-08 54.5 2.5 27 92-118 19-45 (230)
244 2olj_A Amino acid ABC transpor 96.4 0.0015 5.2E-08 56.2 3.1 26 92-117 49-74 (263)
245 1u0j_A DNA replication protein 96.4 0.0022 7.6E-08 56.0 4.1 27 93-119 104-130 (267)
246 3b85_A Phosphate starvation-in 96.4 0.0015 5.2E-08 54.2 3.0 25 92-116 21-45 (208)
247 2ghi_A Transport protein; mult 96.4 0.0016 5.4E-08 55.7 3.1 26 92-117 45-70 (260)
248 2dr3_A UPF0273 protein PH0284; 96.4 0.0023 8E-08 51.9 4.0 38 89-126 19-61 (247)
249 2ixe_A Antigen peptide transpo 96.4 0.0016 5.4E-08 56.1 3.1 26 92-117 44-69 (271)
250 2orw_A Thymidine kinase; TMTK, 96.4 0.0025 8.5E-08 51.6 4.0 26 92-117 2-27 (184)
251 1sgw_A Putative ABC transporte 96.4 0.0015 5.2E-08 54.6 2.7 26 92-117 34-59 (214)
252 1lw7_A Transcriptional regulat 96.4 0.0017 5.8E-08 57.5 3.2 28 93-120 170-197 (365)
253 3pxi_A Negative regulator of g 96.4 0.0024 8.1E-08 61.9 4.4 34 95-128 523-561 (758)
254 2ihy_A ABC transporter, ATP-bi 96.4 0.0018 6E-08 56.2 3.1 26 92-117 46-71 (279)
255 2yz2_A Putative ABC transporte 96.4 0.0018 6.1E-08 55.5 3.1 25 92-116 32-56 (266)
256 2qi9_C Vitamin B12 import ATP- 96.3 0.0018 6.2E-08 55.2 3.1 26 92-117 25-50 (249)
257 1nlf_A Regulatory protein REPA 96.3 0.0026 8.7E-08 53.9 4.0 28 89-116 26-53 (279)
258 1vpl_A ABC transporter, ATP-bi 96.3 0.0019 6.5E-08 55.3 3.1 26 92-117 40-65 (256)
259 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0018 6.3E-08 58.3 3.0 36 89-124 119-156 (331)
260 3e70_C DPA, signal recognition 96.3 0.0025 8.6E-08 56.7 3.9 26 92-117 128-153 (328)
261 2nq2_C Hypothetical ABC transp 96.3 0.0021 7.2E-08 54.8 3.0 25 92-116 30-54 (253)
262 2hf9_A Probable hydrogenase ni 96.3 0.0058 2E-07 49.2 5.5 26 92-117 37-62 (226)
263 3kta_A Chromosome segregation 96.2 0.0036 1.2E-07 49.0 4.1 25 94-118 27-51 (182)
264 2px0_A Flagellar biosynthesis 96.2 0.0031 1E-07 55.1 4.0 35 92-126 104-144 (296)
265 1vma_A Cell division protein F 96.2 0.0031 1E-07 55.6 3.9 34 93-126 104-142 (306)
266 1a5t_A Delta prime, HOLB; zinc 96.2 0.0074 2.5E-07 52.7 6.3 28 93-120 24-51 (334)
267 2wsm_A Hydrogenase expression/ 96.2 0.0044 1.5E-07 49.7 4.5 26 92-117 29-54 (221)
268 2onk_A Molybdate/tungstate ABC 96.2 0.0028 9.7E-08 53.7 3.5 24 94-117 25-48 (240)
269 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0028 9.5E-08 57.4 3.6 25 92-116 29-53 (359)
270 1qvr_A CLPB protein; coiled co 96.2 0.005 1.7E-07 60.6 5.6 29 94-122 589-620 (854)
271 3tqf_A HPR(Ser) kinase; transf 96.2 0.0036 1.2E-07 52.0 3.9 37 92-129 15-51 (181)
272 2og2_A Putative signal recogni 96.2 0.0033 1.1E-07 56.7 3.9 26 92-117 156-181 (359)
273 3k1j_A LON protease, ATP-depen 96.2 0.0026 8.9E-08 60.3 3.3 27 93-119 60-86 (604)
274 2yv5_A YJEQ protein; hydrolase 96.1 0.004 1.4E-07 54.2 4.1 29 88-117 160-188 (302)
275 2ce2_X GTPase HRAS; signaling 96.1 0.0035 1.2E-07 46.7 3.2 24 93-116 3-26 (166)
276 1z47_A CYSA, putative ABC-tran 96.1 0.0034 1.2E-07 56.7 3.6 25 92-116 40-64 (355)
277 3rlf_A Maltose/maltodextrin im 96.1 0.0033 1.1E-07 57.3 3.6 26 92-117 28-53 (381)
278 2f1r_A Molybdopterin-guanine d 96.1 0.0019 6.3E-08 52.2 1.7 24 94-117 3-26 (171)
279 2wjg_A FEOB, ferrous iron tran 96.1 0.0035 1.2E-07 48.5 3.2 26 90-115 4-29 (188)
280 2yyz_A Sugar ABC transporter, 96.1 0.0035 1.2E-07 56.6 3.6 25 92-116 28-52 (359)
281 2it1_A 362AA long hypothetical 96.1 0.0035 1.2E-07 56.6 3.6 25 92-116 28-52 (362)
282 1kao_A RAP2A; GTP-binding prot 96.1 0.0039 1.3E-07 46.6 3.3 24 92-115 2-25 (167)
283 2bbs_A Cystic fibrosis transme 96.0 0.0032 1.1E-07 55.0 3.0 25 92-116 63-87 (290)
284 1c9k_A COBU, adenosylcobinamid 96.0 0.0028 9.6E-08 52.2 2.5 28 96-124 2-31 (180)
285 1g29_1 MALK, maltose transport 96.0 0.0038 1.3E-07 56.5 3.6 25 92-116 28-52 (372)
286 1v43_A Sugar-binding transport 96.0 0.0039 1.3E-07 56.6 3.6 25 92-116 36-60 (372)
287 1pzn_A RAD51, DNA repair and r 96.0 0.0042 1.4E-07 55.2 3.8 28 90-117 128-155 (349)
288 2wji_A Ferrous iron transport 96.0 0.004 1.4E-07 47.9 3.1 23 93-115 3-25 (165)
289 2gza_A Type IV secretion syste 96.0 0.0028 9.7E-08 56.6 2.6 26 92-117 174-199 (361)
290 2pjz_A Hypothetical protein ST 96.0 0.0033 1.1E-07 54.1 2.9 24 93-116 30-53 (263)
291 2ewv_A Twitching motility prot 96.0 0.0044 1.5E-07 55.7 3.8 26 92-117 135-160 (372)
292 1u94_A RECA protein, recombina 96.0 0.0081 2.8E-07 53.9 5.5 45 89-133 59-112 (356)
293 1xjc_A MOBB protein homolog; s 95.9 0.0054 1.9E-07 49.8 3.8 24 94-117 5-28 (169)
294 3nh6_A ATP-binding cassette SU 95.9 0.0024 8.2E-08 56.4 1.7 26 92-117 79-104 (306)
295 1u8z_A RAS-related protein RAL 95.9 0.005 1.7E-07 46.0 3.3 25 92-116 3-27 (168)
296 3gd7_A Fusion complex of cysti 95.9 0.0045 1.5E-07 56.5 3.6 24 92-115 46-69 (390)
297 2zr9_A Protein RECA, recombina 95.9 0.0059 2E-07 54.5 4.2 38 89-126 57-99 (349)
298 3d31_A Sulfate/molybdate ABC t 95.9 0.003 1E-07 56.8 2.3 25 92-116 25-49 (348)
299 2yhs_A FTSY, cell division pro 95.9 0.0052 1.8E-07 58.1 3.9 26 92-117 292-317 (503)
300 3tui_C Methionine import ATP-b 95.9 0.0049 1.7E-07 56.0 3.6 25 92-116 53-77 (366)
301 1u0l_A Probable GTPase ENGC; p 95.9 0.0042 1.4E-07 53.9 3.0 25 91-115 167-191 (301)
302 1oix_A RAS-related protein RAB 95.9 0.0053 1.8E-07 48.6 3.4 23 94-116 30-52 (191)
303 3f9v_A Minichromosome maintena 95.8 0.0026 8.7E-08 60.7 1.7 30 95-124 329-358 (595)
304 2gj8_A MNME, tRNA modification 95.8 0.0054 1.8E-07 47.8 3.3 24 93-116 4-27 (172)
305 2rcn_A Probable GTPase ENGC; Y 95.8 0.0055 1.9E-07 55.4 3.8 26 90-115 212-237 (358)
306 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0045 1.5E-07 57.5 3.2 34 92-125 137-176 (460)
307 2v3c_C SRP54, signal recogniti 95.8 0.0036 1.2E-07 57.7 2.5 33 94-126 100-137 (432)
308 1c1y_A RAS-related protein RAP 95.8 0.0059 2E-07 45.9 3.3 24 92-115 2-25 (167)
309 2f9l_A RAB11B, member RAS onco 95.8 0.006 2.1E-07 48.3 3.5 23 94-116 6-28 (199)
310 2dyk_A GTP-binding protein; GT 95.7 0.0067 2.3E-07 45.4 3.4 23 94-116 2-24 (161)
311 1z2a_A RAS-related protein RAB 95.7 0.0069 2.4E-07 45.5 3.5 23 93-115 5-27 (168)
312 3cmw_A Protein RECA, recombina 95.7 0.009 3.1E-07 63.7 5.4 62 91-153 1080-1153(1706)
313 1oxx_K GLCV, glucose, ABC tran 95.7 0.003 1E-07 56.7 1.6 25 92-116 30-54 (353)
314 1yrb_A ATP(GTP)binding protein 95.7 0.009 3.1E-07 49.2 4.3 34 92-125 13-50 (262)
315 1pui_A ENGB, probable GTP-bind 95.7 0.0034 1.2E-07 49.7 1.7 24 92-115 25-48 (210)
316 1np6_A Molybdopterin-guanine d 95.7 0.0078 2.7E-07 48.7 3.8 24 94-117 7-30 (174)
317 3jvv_A Twitching mobility prot 95.7 0.0071 2.4E-07 54.3 3.9 26 92-117 122-147 (356)
318 3sop_A Neuronal-specific septi 95.7 0.0069 2.4E-07 52.1 3.6 24 94-117 3-26 (270)
319 3p32_A Probable GTPase RV1496/ 95.6 0.0083 2.9E-07 53.1 4.1 34 92-125 78-116 (355)
320 2zej_A Dardarin, leucine-rich 95.6 0.0058 2E-07 47.8 2.8 22 94-115 3-24 (184)
321 2zts_A Putative uncharacterize 95.6 0.0085 2.9E-07 48.5 3.8 26 89-114 26-51 (251)
322 2z43_A DNA repair and recombin 95.6 0.0077 2.6E-07 52.5 3.7 38 89-126 103-151 (324)
323 1ek0_A Protein (GTP-binding pr 95.6 0.0064 2.2E-07 45.7 2.8 23 93-115 3-25 (170)
324 1zu4_A FTSY; GTPase, signal re 95.6 0.0086 3E-07 52.9 3.9 34 93-126 105-143 (320)
325 1j8m_F SRP54, signal recogniti 95.6 0.0076 2.6E-07 52.6 3.5 33 93-125 98-135 (297)
326 2i1q_A DNA repair and recombin 95.5 0.0072 2.4E-07 52.3 3.3 28 89-116 94-121 (322)
327 2ged_A SR-beta, signal recogni 95.5 0.01 3.5E-07 46.1 3.8 24 93-116 48-71 (193)
328 2qm8_A GTPase/ATPase; G protei 95.5 0.0096 3.3E-07 52.7 4.0 33 85-117 46-79 (337)
329 2lkc_A Translation initiation 95.5 0.011 3.6E-07 45.1 3.7 24 92-115 7-30 (178)
330 2nzj_A GTP-binding protein REM 95.5 0.0091 3.1E-07 45.3 3.3 22 94-115 5-26 (175)
331 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0056 1.9E-07 54.1 2.3 25 93-117 171-195 (330)
332 3q85_A GTP-binding protein REM 95.4 0.0094 3.2E-07 45.0 3.3 21 94-114 3-23 (169)
333 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0084 2.9E-07 56.5 3.6 25 92-116 46-70 (538)
334 1z08_A RAS-related protein RAB 95.4 0.01 3.6E-07 44.7 3.5 23 94-116 7-29 (170)
335 1z0j_A RAB-22, RAS-related pro 95.4 0.01 3.5E-07 44.6 3.5 24 93-116 6-29 (170)
336 3con_A GTPase NRAS; structural 95.4 0.0076 2.6E-07 46.8 2.8 26 91-116 19-44 (190)
337 2erx_A GTP-binding protein DI- 95.4 0.0097 3.3E-07 44.7 3.3 22 94-115 4-25 (172)
338 1ls1_A Signal recognition part 95.4 0.011 3.6E-07 51.5 3.9 34 92-125 97-135 (295)
339 1nrj_B SR-beta, signal recogni 95.4 0.011 3.9E-07 47.0 3.8 25 93-117 12-36 (218)
340 3kl4_A SRP54, signal recogniti 95.4 0.0086 3E-07 55.4 3.5 34 93-126 97-135 (433)
341 3q72_A GTP-binding protein RAD 95.4 0.0092 3.1E-07 45.0 3.1 21 94-114 3-23 (166)
342 1upt_A ARL1, ADP-ribosylation 95.4 0.012 4E-07 44.5 3.7 23 93-115 7-29 (171)
343 1p9r_A General secretion pathw 95.4 0.032 1.1E-06 51.1 7.2 27 92-118 166-192 (418)
344 3hr8_A Protein RECA; alpha and 95.4 0.01 3.5E-07 53.5 3.7 38 89-126 57-99 (356)
345 3b5x_A Lipid A export ATP-bind 95.4 0.0089 3E-07 56.4 3.5 26 92-117 368-393 (582)
346 1ky3_A GTP-binding protein YPT 95.4 0.011 3.8E-07 44.9 3.5 23 93-115 8-30 (182)
347 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0088 3E-07 45.8 2.9 24 92-115 4-27 (186)
348 1m2o_B GTP-binding protein SAR 95.4 0.011 3.7E-07 46.7 3.5 24 92-115 22-45 (190)
349 1g16_A RAS-related protein SEC 95.4 0.011 3.8E-07 44.4 3.4 22 94-115 4-25 (170)
350 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.011 3.8E-07 44.9 3.5 23 93-115 7-29 (177)
351 1v5w_A DMC1, meiotic recombina 95.3 0.011 3.7E-07 52.3 3.8 28 89-116 118-145 (343)
352 2fn4_A P23, RAS-related protei 95.3 0.01 3.6E-07 45.0 3.2 25 92-116 8-32 (181)
353 1r2q_A RAS-related protein RAB 95.3 0.012 4.1E-07 44.1 3.5 23 93-115 6-28 (170)
354 3bc1_A RAS-related protein RAB 95.3 0.012 4.1E-07 45.1 3.5 22 94-115 12-33 (195)
355 2a9k_A RAS-related protein RAL 95.3 0.011 3.7E-07 45.2 3.2 24 92-115 17-40 (187)
356 2dpy_A FLII, flagellum-specifi 95.3 0.012 4E-07 54.3 4.0 35 84-118 148-182 (438)
357 2b8t_A Thymidine kinase; deoxy 95.3 0.014 4.7E-07 49.3 4.0 26 92-117 11-36 (223)
358 2obl_A ESCN; ATPase, hydrolase 95.3 0.012 4.2E-07 52.5 4.0 34 85-118 63-96 (347)
359 1r8s_A ADP-ribosylation factor 95.3 0.014 4.6E-07 43.9 3.6 22 95-116 2-23 (164)
360 3b60_A Lipid A export ATP-bind 95.3 0.0086 2.9E-07 56.5 3.0 26 92-117 368-393 (582)
361 3tw8_B RAS-related protein RAB 95.2 0.011 3.9E-07 44.8 3.2 21 94-114 10-30 (181)
362 2y8e_A RAB-protein 6, GH09086P 95.2 0.0096 3.3E-07 45.2 2.7 24 92-115 13-36 (179)
363 1z0f_A RAB14, member RAS oncog 95.2 0.013 4.4E-07 44.4 3.5 23 94-116 16-38 (179)
364 1xp8_A RECA protein, recombina 95.2 0.014 4.9E-07 52.5 4.2 38 89-126 70-112 (366)
365 3k53_A Ferrous iron transport 95.2 0.012 4.2E-07 49.5 3.5 24 92-115 2-25 (271)
366 1ko7_A HPR kinase/phosphatase; 95.2 0.014 4.6E-07 52.1 3.9 36 92-128 143-178 (314)
367 2hxs_A RAB-26, RAS-related pro 95.2 0.013 4.3E-07 44.7 3.3 23 93-115 6-28 (178)
368 4dsu_A GTPase KRAS, isoform 2B 95.2 0.014 4.6E-07 44.8 3.5 23 94-116 5-27 (189)
369 1f6b_A SAR1; gtpases, N-termin 95.2 0.014 4.8E-07 46.4 3.7 29 86-114 18-46 (198)
370 3lda_A DNA repair protein RAD5 95.1 0.012 4.1E-07 53.7 3.6 27 89-115 174-200 (400)
371 3dm5_A SRP54, signal recogniti 95.1 0.014 4.7E-07 54.3 3.9 35 93-127 100-139 (443)
372 3kkq_A RAS-related protein M-R 95.1 0.014 4.9E-07 44.8 3.4 26 91-116 16-41 (183)
373 1tf7_A KAIC; homohexamer, hexa 95.1 0.012 4.2E-07 54.7 3.6 35 91-125 37-77 (525)
374 1svi_A GTP-binding protein YSX 95.1 0.015 5.2E-07 45.1 3.6 23 93-115 23-45 (195)
375 3clv_A RAB5 protein, putative; 95.1 0.016 5.3E-07 44.6 3.6 24 93-116 7-30 (208)
376 1m7b_A RND3/RHOE small GTP-bin 95.1 0.014 4.9E-07 45.3 3.4 24 93-116 7-30 (184)
377 2cxx_A Probable GTP-binding pr 95.1 0.013 4.6E-07 45.0 3.2 21 95-115 3-23 (190)
378 3bh0_A DNAB-like replicative h 95.1 0.018 6E-07 50.2 4.3 28 89-116 64-91 (315)
379 2bme_A RAB4A, RAS-related prot 95.1 0.015 5.1E-07 44.7 3.4 22 94-115 11-32 (186)
380 3t1o_A Gliding protein MGLA; G 95.0 0.016 5.3E-07 44.7 3.5 24 94-117 15-38 (198)
381 3ihw_A Centg3; RAS, centaurin, 95.0 0.015 5.2E-07 45.7 3.4 28 89-116 16-43 (184)
382 1yqt_A RNAse L inhibitor; ATP- 95.0 0.014 4.6E-07 55.1 3.6 25 92-116 311-335 (538)
383 2efe_B Small GTP-binding prote 95.0 0.016 5.6E-07 44.2 3.5 23 93-115 12-34 (181)
384 2bov_A RAla, RAS-related prote 95.0 0.015 5.2E-07 45.4 3.4 25 91-115 12-36 (206)
385 2g6b_A RAS-related protein RAB 95.0 0.016 5.6E-07 44.1 3.5 23 93-115 10-32 (180)
386 2yl4_A ATP-binding cassette SU 95.0 0.0091 3.1E-07 56.5 2.4 26 92-117 369-394 (595)
387 2oil_A CATX-8, RAS-related pro 95.0 0.016 5.5E-07 45.1 3.5 23 93-115 25-47 (193)
388 3bwd_D RAC-like GTP-binding pr 95.0 0.019 6.6E-07 43.8 3.8 24 92-115 7-30 (182)
389 2oap_1 GSPE-2, type II secreti 95.0 0.0094 3.2E-07 56.0 2.4 26 92-117 259-284 (511)
390 1moz_A ARL1, ADP-ribosylation 95.0 0.012 4E-07 45.2 2.5 23 92-114 17-39 (183)
391 3pqc_A Probable GTP-binding pr 95.0 0.018 6E-07 44.4 3.5 24 93-116 23-46 (195)
392 3ozx_A RNAse L inhibitor; ATP 94.9 0.013 4.4E-07 55.4 3.1 25 92-116 293-317 (538)
393 3qf4_B Uncharacterized ABC tra 94.9 0.011 3.7E-07 56.2 2.6 26 92-117 380-405 (598)
394 2atv_A RERG, RAS-like estrogen 94.9 0.02 6.8E-07 44.9 3.7 25 92-116 27-51 (196)
395 3tkl_A RAS-related protein RAB 94.9 0.019 6.4E-07 44.5 3.5 22 94-115 17-38 (196)
396 1ksh_A ARF-like protein 2; sma 94.8 0.018 6.3E-07 44.4 3.4 24 92-115 17-40 (186)
397 2p67_A LAO/AO transport system 94.8 0.02 6.7E-07 50.4 3.9 26 92-117 55-80 (341)
398 3dz8_A RAS-related protein RAB 94.8 0.02 6.9E-07 44.7 3.6 24 94-117 24-47 (191)
399 3lxx_A GTPase IMAP family memb 94.8 0.017 5.8E-07 47.4 3.3 23 93-115 29-51 (239)
400 3ozx_A RNAse L inhibitor; ATP 94.8 0.013 4.6E-07 55.3 3.0 25 92-116 24-48 (538)
401 2iwr_A Centaurin gamma 1; ANK 94.8 0.013 4.5E-07 44.8 2.4 25 92-116 6-30 (178)
402 3t5g_A GTP-binding protein RHE 94.8 0.018 6.2E-07 44.1 3.2 23 93-115 6-28 (181)
403 2gf9_A RAS-related protein RAB 94.8 0.02 7E-07 44.5 3.5 23 94-116 23-45 (189)
404 1x3s_A RAS-related protein RAB 94.8 0.021 7E-07 44.1 3.5 24 93-116 15-38 (195)
405 1tf7_A KAIC; homohexamer, hexa 94.8 0.02 6.8E-07 53.3 3.9 29 89-117 277-305 (525)
406 1vg8_A RAS-related protein RAB 94.7 0.02 7E-07 44.8 3.5 24 93-116 8-31 (207)
407 2gf0_A GTP-binding protein DI- 94.7 0.022 7.6E-07 44.2 3.6 23 93-115 8-30 (199)
408 1fzq_A ADP-ribosylation factor 94.7 0.019 6.6E-07 44.7 3.3 24 92-115 15-38 (181)
409 3oes_A GTPase rhebl1; small GT 94.7 0.018 6.2E-07 45.4 3.1 24 93-116 24-47 (201)
410 2r6a_A DNAB helicase, replicat 94.7 0.024 8.4E-07 51.7 4.3 28 89-116 199-226 (454)
411 1t9h_A YLOQ, probable GTPase E 94.7 0.0059 2E-07 54.0 0.2 26 90-115 170-195 (307)
412 1p6x_A Thymidine kinase; P-loo 94.7 0.0092 3.1E-07 53.5 1.4 29 91-119 5-33 (334)
413 2fg5_A RAB-22B, RAS-related pr 94.7 0.021 7.2E-07 44.7 3.4 23 93-115 23-45 (192)
414 2www_A Methylmalonic aciduria 94.7 0.022 7.6E-07 50.5 3.9 25 93-117 74-98 (349)
415 4a82_A Cystic fibrosis transme 94.7 0.0093 3.2E-07 56.3 1.5 26 92-117 366-391 (578)
416 3bk7_A ABC transporter ATP-bin 94.7 0.018 6.3E-07 55.1 3.6 25 92-116 381-405 (607)
417 1z06_A RAS-related protein RAB 94.7 0.022 7.4E-07 44.3 3.5 23 93-115 20-42 (189)
418 2fh5_B SR-beta, signal recogni 94.7 0.022 7.5E-07 45.2 3.5 24 93-116 7-30 (214)
419 1sky_E F1-ATPase, F1-ATP synth 94.7 0.028 9.7E-07 52.7 4.8 35 83-117 141-175 (473)
420 2p5s_A RAS and EF-hand domain 94.7 0.022 7.7E-07 44.8 3.6 23 93-115 28-50 (199)
421 1zj6_A ADP-ribosylation factor 94.7 0.022 7.5E-07 44.2 3.4 24 92-115 15-38 (187)
422 3j16_B RLI1P; ribosome recycli 94.7 0.019 6.4E-07 55.2 3.6 25 92-116 102-126 (608)
423 2h17_A ADP-ribosylation factor 94.7 0.019 6.6E-07 44.4 3.1 24 92-115 20-43 (181)
424 3c5c_A RAS-like protein 12; GD 94.7 0.022 7.5E-07 44.6 3.5 24 93-116 21-44 (187)
425 3reg_A RHO-like small GTPase; 94.6 0.022 7.7E-07 44.4 3.5 24 93-116 23-46 (194)
426 1zbd_A Rabphilin-3A; G protein 94.6 0.021 7.2E-07 44.8 3.3 22 94-115 9-30 (203)
427 3bk7_A ABC transporter ATP-bin 94.6 0.016 5.5E-07 55.5 3.1 25 92-116 116-140 (607)
428 1zd9_A ADP-ribosylation factor 94.6 0.023 7.9E-07 44.4 3.5 23 93-115 22-44 (188)
429 2a5j_A RAS-related protein RAB 94.6 0.023 7.9E-07 44.4 3.5 22 94-115 22-43 (191)
430 1xx6_A Thymidine kinase; NESG, 94.6 0.028 9.5E-07 46.1 4.0 26 92-117 7-32 (191)
431 2r2a_A Uncharacterized protein 94.5 0.026 8.8E-07 46.6 3.7 24 93-116 5-28 (199)
432 3e1s_A Exodeoxyribonuclease V, 94.5 0.028 9.6E-07 53.4 4.5 27 91-117 202-228 (574)
433 2gno_A DNA polymerase III, gam 94.5 0.028 9.5E-07 49.1 4.1 25 93-117 18-42 (305)
434 2qag_B Septin-6, protein NEDD5 94.5 0.019 6.4E-07 53.2 3.1 24 92-115 39-64 (427)
435 3qf4_A ABC transporter, ATP-bi 94.5 0.013 4.3E-07 55.6 2.0 26 92-117 368-393 (587)
436 2bcg_Y Protein YP2, GTP-bindin 94.5 0.025 8.4E-07 44.6 3.4 22 94-115 9-30 (206)
437 1gwn_A RHO-related GTP-binding 94.5 0.024 8.3E-07 45.5 3.4 24 93-116 28-51 (205)
438 2b6h_A ADP-ribosylation factor 94.5 0.024 8.2E-07 44.7 3.3 22 93-114 29-50 (192)
439 2xtp_A GTPase IMAP family memb 94.4 0.026 8.8E-07 46.8 3.5 24 92-115 21-44 (260)
440 1tq4_A IIGP1, interferon-induc 94.4 0.018 6.1E-07 52.9 2.7 23 93-115 69-91 (413)
441 4gzl_A RAS-related C3 botulinu 94.4 0.027 9.3E-07 44.8 3.5 24 92-115 29-52 (204)
442 4bas_A ADP-ribosylation factor 94.4 0.024 8.3E-07 44.0 3.2 23 92-114 16-38 (199)
443 3cph_A RAS-related protein SEC 94.4 0.028 9.7E-07 44.2 3.6 23 93-115 20-42 (213)
444 2q3h_A RAS homolog gene family 94.4 0.027 9.1E-07 44.1 3.4 24 92-115 19-42 (201)
445 2ew1_A RAS-related protein RAB 94.4 0.027 9.1E-07 45.3 3.4 23 93-115 26-48 (201)
446 3upu_A ATP-dependent DNA helic 94.4 0.026 9E-07 51.4 3.8 23 95-117 47-69 (459)
447 2j37_W Signal recognition part 94.4 0.025 8.6E-07 53.2 3.7 34 93-126 101-139 (504)
448 2fv8_A H6, RHO-related GTP-bin 94.3 0.028 9.5E-07 44.7 3.4 23 93-115 25-47 (207)
449 2atx_A Small GTP binding prote 94.3 0.029 9.9E-07 43.7 3.4 23 94-116 19-41 (194)
450 2ffh_A Protein (FFH); SRP54, s 94.3 0.029 9.8E-07 51.8 3.9 34 92-125 97-135 (425)
451 3cbq_A GTP-binding protein REM 94.3 0.021 7.2E-07 45.4 2.6 21 94-114 24-44 (195)
452 2fu5_C RAS-related protein RAB 94.3 0.016 5.4E-07 44.6 1.8 22 94-115 9-30 (183)
453 3j16_B RLI1P; ribosome recycli 94.3 0.025 8.7E-07 54.3 3.6 24 93-116 378-401 (608)
454 2o52_A RAS-related protein RAB 94.3 0.027 9.3E-07 44.6 3.2 22 93-114 25-46 (200)
455 2gco_A H9, RHO-related GTP-bin 94.3 0.029 1E-06 44.3 3.4 23 93-115 25-47 (201)
456 2il1_A RAB12; G-protein, GDP, 94.2 0.027 9.3E-07 44.2 3.1 22 93-114 26-47 (192)
457 2f7s_A C25KG, RAS-related prot 94.2 0.028 9.7E-07 44.6 3.3 22 94-115 26-47 (217)
458 2r8r_A Sensor protein; KDPD, P 94.2 0.032 1.1E-06 47.7 3.7 33 94-126 7-44 (228)
459 2cjw_A GTP-binding protein GEM 94.2 0.029 1E-06 44.4 3.3 22 94-115 7-28 (192)
460 1z6t_A APAF-1, apoptotic prote 94.2 0.034 1.2E-06 51.4 4.2 23 93-115 147-169 (591)
461 2q6t_A DNAB replication FORK h 94.2 0.036 1.2E-06 50.4 4.3 28 89-116 196-223 (444)
462 2x77_A ADP-ribosylation factor 94.2 0.023 7.8E-07 44.1 2.5 23 92-114 21-43 (189)
463 2h57_A ADP-ribosylation factor 94.2 0.024 8.2E-07 44.1 2.6 24 93-116 21-44 (190)
464 2hup_A RAS-related protein RAB 94.2 0.032 1.1E-06 44.3 3.4 22 94-115 30-51 (201)
465 3q3j_B RHO-related GTP-binding 94.1 0.035 1.2E-06 44.7 3.6 25 91-115 25-49 (214)
466 2qnr_A Septin-2, protein NEDD5 94.1 0.026 9E-07 48.9 3.0 22 94-115 19-40 (301)
467 2xxa_A Signal recognition part 94.1 0.034 1.2E-06 51.2 3.9 34 93-126 100-139 (433)
468 2j0v_A RAC-like GTP-binding pr 94.1 0.034 1.2E-06 44.0 3.4 23 93-115 9-31 (212)
469 2j1l_A RHO-related GTP-binding 94.1 0.032 1.1E-06 44.8 3.2 23 93-115 34-56 (214)
470 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.045 1.5E-06 42.6 4.0 24 94-117 24-47 (149)
471 2qu8_A Putative nucleolar GTP- 94.0 0.033 1.1E-06 45.1 3.3 23 93-115 29-51 (228)
472 2a5y_B CED-4; apoptosis; HET: 94.0 0.032 1.1E-06 52.0 3.6 23 93-115 152-174 (549)
473 1nij_A Hypothetical protein YJ 94.0 0.027 9.3E-07 49.1 2.9 23 94-116 5-27 (318)
474 3lxw_A GTPase IMAP family memb 94.0 0.033 1.1E-06 46.6 3.3 23 93-115 21-43 (247)
475 1knx_A Probable HPR(Ser) kinas 94.0 0.035 1.2E-06 49.4 3.5 36 92-128 146-181 (312)
476 3ice_A Transcription terminati 93.9 0.057 2E-06 50.1 5.0 35 83-117 163-198 (422)
477 3llu_A RAS-related GTP-binding 93.9 0.036 1.2E-06 43.6 3.3 23 93-115 20-42 (196)
478 3i8s_A Ferrous iron transport 93.9 0.038 1.3E-06 47.0 3.6 24 92-115 2-25 (274)
479 4ag6_A VIRB4 ATPase, type IV s 93.9 0.042 1.4E-06 48.7 3.9 26 91-116 33-58 (392)
480 3euj_A Chromosome partition pr 93.8 0.034 1.2E-06 52.1 3.5 24 94-117 30-53 (483)
481 3end_A Light-independent proto 93.8 0.05 1.7E-06 46.3 4.2 34 92-125 40-78 (307)
482 3cpj_B GTP-binding protein YPT 93.8 0.043 1.5E-06 44.2 3.4 22 94-115 14-35 (223)
483 2iw3_A Elongation factor 3A; a 93.7 0.037 1.3E-06 56.2 3.6 24 92-115 460-483 (986)
484 3cmu_A Protein RECA, recombina 93.7 0.041 1.4E-06 59.6 4.2 38 89-126 1423-1465(2050)
485 4a1f_A DNAB helicase, replicat 93.7 0.055 1.9E-06 48.4 4.3 28 89-116 42-69 (338)
486 2fz4_A DNA repair protein RAD2 93.6 0.1 3.5E-06 43.3 5.7 30 90-119 105-134 (237)
487 1e2k_A Thymidine kinase; trans 93.6 0.018 6.3E-07 51.5 1.0 26 93-118 4-29 (331)
488 3a1s_A Iron(II) transport prot 93.6 0.033 1.1E-06 47.1 2.6 23 93-115 5-27 (258)
489 1of1_A Thymidine kinase; trans 93.6 0.023 7.8E-07 51.9 1.6 28 91-118 47-74 (376)
490 3iby_A Ferrous iron transport 93.5 0.044 1.5E-06 46.4 3.3 22 94-115 2-23 (256)
491 3def_A T7I23.11 protein; chlor 93.5 0.072 2.5E-06 44.6 4.6 25 91-115 34-58 (262)
492 1ega_A Protein (GTP-binding pr 93.4 0.035 1.2E-06 48.0 2.6 24 92-115 7-30 (301)
493 1w36_D RECD, exodeoxyribonucle 93.4 0.05 1.7E-06 51.8 3.8 27 91-117 162-188 (608)
494 3b1v_A Ferrous iron uptake tra 93.4 0.047 1.6E-06 46.8 3.3 22 94-115 4-25 (272)
495 1h65_A Chloroplast outer envel 93.4 0.079 2.7E-06 44.5 4.6 23 93-115 39-61 (270)
496 1zcb_A G alpha I/13; GTP-bindi 93.3 0.048 1.7E-06 48.9 3.4 24 93-116 33-56 (362)
497 2yc2_C IFT27, small RAB-relate 93.3 0.02 6.8E-07 44.7 0.7 24 93-116 20-43 (208)
498 3qks_A DNA double-strand break 93.3 0.055 1.9E-06 44.1 3.4 27 93-119 23-49 (203)
499 3bgw_A DNAB-like replicative h 93.3 0.062 2.1E-06 49.3 4.1 29 89-117 193-221 (444)
500 2g3y_A GTP-binding protein GEM 93.3 0.053 1.8E-06 44.5 3.3 22 93-114 37-58 (211)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.87 E-value=4.9e-22 Score=172.16 Aligned_cols=124 Identities=36% Similarity=0.524 Sum_probs=112.5
Q ss_pred chHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CCCchhhhhhhhchHHHHHHHHH
Q 028227 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQQAETE 155 (212)
Q Consensus 77 ~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~~si~ei~~~~Ge~~fr~~E~~ 155 (212)
...|++...++...+++..|+|+|++||||||+++.||+.+|++|+|+|.++++.. | .++.++++..|+..|++.|.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~~i~~i~~~~ge~~fr~~e~~ 110 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-TSVAEIFEHFGESVFREKETE 110 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-SCHHHHHHHHCHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-ccHHHHHHHhCcHHHHHHHHH
Confidence 45788888888888889999999999999999999999999999999999999988 6 899999999999999999999
Q ss_pred HHHHHhcC-CCEEEEeCCceeechhhHHhccCCeEEEEEechh-hhhc
Q 028227 156 VLKQLSSM-GRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR-RSSR 201 (212)
Q Consensus 156 vL~~L~~~-~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~~~~-~v~R 201 (212)
++.++... .++||++|||++..+.++++++.+++|||+++.+ +++|
T Consensus 111 ~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~R 158 (250)
T 3nwj_A 111 ALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHR 158 (250)
T ss_dssp HHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHH
T ss_pred HHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHH
Confidence 99999876 7899999999999999999999899999999764 3344
No 2
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.86 E-value=1.7e-21 Score=156.24 Aligned_cols=109 Identities=24% Similarity=0.371 Sum_probs=98.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg 172 (212)
+..|+|+|++||||||+|+.||+.+|++|+|+|.++++..| .++.+++...|+..|+..|.+++..+....++||++|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 56899999999999999999999999999999999999988 78889999999999999999999999887889999999
Q ss_pred ceeechhhHHhcc-CCeEEEEEechhhhhcc
Q 028227 173 GAVQSSANLYEIS-GTFKTWNIIMDRRSSRH 202 (212)
Q Consensus 173 G~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R~ 202 (212)
|++++..+++.++ .+++|||+++.+.+.++
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~R 114 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKR 114 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHH
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHH
Confidence 9999999999887 68999999986543333
No 3
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=3.4e-21 Score=157.98 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=97.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
+++.|+|+|++||||||+++.||+.+|++|+|.|+++++..| .++.+++.+.|+..|++.|.++++.+....++||++|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g 102 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG 102 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence 367999999999999999999999999999999999999888 7899999999999999999999999988888999999
Q ss_pred CceeechhhHHhcc-CCeEEEEEechh
Q 028227 172 NGAVQSSANLYEIS-GTFKTWNIIMDR 197 (212)
Q Consensus 172 gG~V~~~~~~~~L~-~g~vV~Ld~~~~ 197 (212)
+|.+....+++.++ .+.+|||+++.+
T Consensus 103 gg~~~~~~~~~~l~~~~~vi~L~~~~e 129 (199)
T 3vaa_A 103 GGAPCFYDNMEFMNRTGKTVFLNVHPD 129 (199)
T ss_dssp TTGGGSTTHHHHHHHHSEEEEEECCHH
T ss_pred CcEEccHHHHHHHHcCCEEEEEECCHH
Confidence 99999999888886 799999999764
No 4
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.81 E-value=1.7e-19 Score=144.70 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=95.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
..|+|+|+|||||||+|+.||+.+|++++|+|.++++..| .++.+++.+.|+..|++.+.++++.+....++|+++|+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~ 81 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG 81 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCc
Confidence 4699999999999999999999999999999999998888 677788888899999999989898887767789999988
Q ss_pred eeechhhHHhccCCeEEEEEechh-hhhcccC
Q 028227 174 AVQSSANLYEISGTFKTWNIIMDR-RSSRHGS 204 (212)
Q Consensus 174 ~V~~~~~~~~L~~g~vV~Ld~~~~-~v~R~~~ 204 (212)
+++++.+++.++.+.+|||+++.+ +++|...
T Consensus 82 ~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~ 113 (184)
T 2iyv_A 82 AVTSPGVRAALAGHTVVYLEISAAEGVRRTGG 113 (184)
T ss_dssp GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTC
T ss_pred EEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence 888888888777789999999864 4455433
No 5
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.80 E-value=3.1e-19 Score=141.59 Aligned_cols=105 Identities=22% Similarity=0.299 Sum_probs=90.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE-EEEeCC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCAGN 172 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~-VVa~Gg 172 (212)
++|+|+|++||||||+|+.||+.+|++|+|+|.++++..| .++.+++...|+..|++.+.+++..+.....+ |+++|+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~ 86 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG 86 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 7899999999999999999999999999999999999888 78889998899999999999999998866778 999888
Q ss_pred ceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227 173 GAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG 203 (212)
Q Consensus 173 G~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~ 203 (212)
|++.. .+ |+ .+.+|||+++.+ +++|..
T Consensus 87 g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~ 115 (168)
T 1zuh_A 87 GIVMH-EN---LKGLGTTFYLKMDFETLIKRLN 115 (168)
T ss_dssp GGGGC-GG---GTTSEEEEEEECCHHHHHHHHC
T ss_pred CEech-hH---HhcCCEEEEEECCHHHHHHHHh
Confidence 88776 44 55 679999999864 555543
No 6
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.79 E-value=8.7e-19 Score=140.12 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=90.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
++|+|+|+|||||||+|+.||+.+|++|+|.|.++++..| .++.+++.+.|+..|++.|.++++.+....++||++|+|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 3699999999999999999999999999999999998888 778888888899999999999999988778899999988
Q ss_pred eeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227 174 AVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG 203 (212)
Q Consensus 174 ~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~ 203 (212)
++.+ .+ |+ .+.+|||+++.+ +++|..
T Consensus 84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~ 111 (175)
T 1via_A 84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLD 111 (175)
T ss_dssp GGGS-TT---GGGGCEEEEEECCHHHHTTCCC
T ss_pred Eehh-hH---HhcCCEEEEEeCCHHHHHHHHh
Confidence 8876 44 54 689999999764 444443
No 7
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.77 E-value=2.6e-18 Score=135.43 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=93.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~ 174 (212)
.|+|+|++||||||+++.|++.+|++++|+|.+.++..| ..+.+++...|+..|+..+.+++..+...+.+||++|+|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~ 80 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGL 80 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCE
Confidence 689999999999999999999999999999999998888 7788888888999999888899988876678999988777
Q ss_pred eechhhHHhcc-CCeEEEEEechh-hhhcccC
Q 028227 175 VQSSANLYEIS-GTFKTWNIIMDR-RSSRHGS 204 (212)
Q Consensus 175 V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~~ 204 (212)
...+.+++.++ .+.+|||+++.+ +++|...
T Consensus 81 ~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~ 112 (168)
T 2pt5_A 81 GANEEALNFMKSRGTTVFIDIPFEVFLERCKD 112 (168)
T ss_dssp HTCHHHHHHHHTTSEEEEEECCHHHHHHHCBC
T ss_pred eCCHHHHHHHHcCCEEEEEECCHHHHHHHHhC
Confidence 77777777776 689999999864 4555443
No 8
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.77 E-value=1.8e-18 Score=136.67 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=92.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG 173 (212)
..|+|+|++||||||+|+.||+.+|++++|.|.++++..| .++.+++...|+..|++.+.+++..+. ...+||++|+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~ 80 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG 80 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence 4699999999999999999999999999999999998877 677888887888999999888998887 67799999988
Q ss_pred eeechhhHHhcc-CCeEEEEEechh-hhhcc
Q 028227 174 AVQSSANLYEIS-GTFKTWNIIMDR-RSSRH 202 (212)
Q Consensus 174 ~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~ 202 (212)
.++.+.+++.++ .+.+|||+++.+ +++|.
T Consensus 81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~ 111 (173)
T 1e6c_A 81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRL 111 (173)
T ss_dssp GGGSHHHHHHHHHHSEEEEEECCHHHHHHHH
T ss_pred EEeCHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 888888888776 689999999754 34443
No 9
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.75 E-value=5.2e-18 Score=134.30 Aligned_cols=110 Identities=25% Similarity=0.392 Sum_probs=94.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg 172 (212)
+..|+|+|++||||||+++.||..++++++|+|.++++..| ..+..+++..|+..|+..|..++..+....++|+++|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~ 82 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG 82 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence 56899999999999999999999999999999999988777 67888888889999999888889988877889999888
Q ss_pred ceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227 173 GAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG 203 (212)
Q Consensus 173 G~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~ 203 (212)
|.+....++++++ .+.+|||+++.+ ..+|..
T Consensus 83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~ 115 (173)
T 1kag_A 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQ 115 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC-
T ss_pred eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHh
Confidence 8888888888777 689999999764 444443
No 10
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.47 E-value=4.3e-13 Score=106.46 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=72.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH-----H-HhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~-----~-~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~ 164 (212)
.++..|+|+|++||||||+++.|+..+|+.++|.|.+.+ + ..| ..+.+ ..++.+|+..+..+...+....
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDAAFAMQRTNK 81 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCCc---cccccHHHHHHHHHHHHHhcCC
Confidence 457899999999999999999999999999999999742 2 234 33221 2345666766654443333345
Q ss_pred CEEEEeCCceeechhhHHhcc-C--C-eEEEEEechh-hhhcc
Q 028227 165 RLVVCAGNGAVQSSANLYEIS-G--T-FKTWNIIMDR-RSSRH 202 (212)
Q Consensus 165 ~~VVa~GgG~V~~~~~~~~L~-~--g-~vV~Ld~~~~-~v~R~ 202 (212)
.+||++|. ....+++.++ . + .+|||+++.+ .++|.
T Consensus 82 ~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~ 121 (175)
T 1knq_A 82 VSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRL 121 (175)
T ss_dssp EEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHH
T ss_pred cEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHH
Confidence 67777754 3456677775 3 3 7999999864 33443
No 11
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.46 E-value=1.3e-13 Score=114.65 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=66.8
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhchHH--HH---------------
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ--------------- 150 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge~~--fr--------------- 150 (212)
.++...|.|.|++||||||+|+.||++||++|+| ++++++... +.+. +.+...++.. |+
T Consensus 3 ~m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T 3fdi_A 3 AMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQ 80 (201)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------C
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccH
Confidence 3456789999999999999999999999999999 666654432 1442 4566666654 33
Q ss_pred ---HHHHHHHHHHh--cCCCEEEEeCC-ceeechhhHHhccCCeEEEEEech-hhhhcc
Q 028227 151 ---QAETEVLKQLS--SMGRLVVCAGN-GAVQSSANLYEISGTFKTWNIIMD-RRSSRH 202 (212)
Q Consensus 151 ---~~E~~vL~~L~--~~~~~VVa~Gg-G~V~~~~~~~~L~~g~vV~Ld~~~-~~v~R~ 202 (212)
+.|.++++++. ..+++|+...+ ++|+. .+ .+++.|||+++. .+++|.
T Consensus 81 ~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~-~~----~~~~~V~L~A~~e~r~~R~ 134 (201)
T 3fdi_A 81 DIAIRQFNFIRKKANEEKESFVIVGRCAEEILS-DN----PNMISAFILGDKDTKTKRV 134 (201)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEESTTHHHHTT-TC----TTEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEECCcchhcC-CC----CCeEEEEEECCHHHHHHHH
Confidence 57889999998 77888887533 33332 11 257999999975 455554
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.43 E-value=2.9e-13 Score=112.50 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=68.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CC----CchhhhhhhhchHHHHHHHHH-HHHHHhc--C
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETE-VLKQLSS--M 163 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~----~si~ei~~~~Ge~~fr~~E~~-vL~~L~~--~ 163 (212)
++..|+|+|+|||||||+++.||+.+|++++|+|++++... ++ ..+.+++.. |+..+++.+.. +...+.. .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence 35789999999999999999999999999999999887654 11 233344432 44344444333 3344442 4
Q ss_pred CCEEEEeCCceeechhhHHhc-cCCeEEEEEechh
Q 028227 164 GRLVVCAGNGAVQSSANLYEI-SGTFKTWNIIMDR 197 (212)
Q Consensus 164 ~~~VVa~GgG~V~~~~~~~~L-~~g~vV~Ld~~~~ 197 (212)
..+|+...++.+....++..+ ..+.+|||+++.+
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~ 119 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFE 119 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHH
T ss_pred CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHH
Confidence 567776544444333334333 3689999999754
No 13
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.43 E-value=3.1e-13 Score=107.10 Aligned_cols=107 Identities=13% Similarity=-0.009 Sum_probs=66.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhCC-------CchhhhhhhhchHHHHHHHHHH---HHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG-------ESAAKAFRESDEKGYQQAETEV---LKQ 159 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G~-------~si~ei~~~~Ge~~fr~~E~~v---L~~ 159 (212)
.+..|+|+|+|||||||+|+.||+.++.+|++ .|.+++...+. .++.+.+...++..|+..+..+ ++.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999988775 88887754331 0111112223456777666543 455
Q ss_pred HhcCCC-EEEEeCC--ceeechhhHHhcc-CC-eEEEEEechhh
Q 028227 160 LSSMGR-LVVCAGN--GAVQSSANLYEIS-GT-FKTWNIIMDRR 198 (212)
Q Consensus 160 L~~~~~-~VVa~Gg--G~V~~~~~~~~L~-~g-~vV~Ld~~~~~ 198 (212)
+...+. +|+++-- +......+++.++ ++ ++|||+++.+.
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~ 125 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAV 125 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHH
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHH
Confidence 554444 4554311 1111234555665 44 57889987543
No 14
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.42 E-value=3.6e-13 Score=104.39 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=70.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC-----Cc----hhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ES----AAKAFRESDEKGYQQAETEVLKQLSSMG 164 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~-----~s----i~ei~~~~Ge~~fr~~E~~vL~~L~~~~ 164 (212)
..|+|+|+|||||||+++.| +.+|+++++.|+++++.... .. ..+++...|+..+++...+.++. ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 47999999999999999999 99999999999998876430 01 12233334556665544444421 234
Q ss_pred CEEEEeCCceeechhhHHhcc-----CCeEEEEEechh-hhhcccCCCC
Q 028227 165 RLVVCAGNGAVQSSANLYEIS-----GTFKTWNIIMDR-RSSRHGSKNG 207 (212)
Q Consensus 165 ~~VVa~GgG~V~~~~~~~~L~-----~g~vV~Ld~~~~-~v~R~~~~~~ 207 (212)
..||..| . ....+++.++ ...+|||+++.+ +.+|...+++
T Consensus 79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-
T ss_pred CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccC
Confidence 5566665 3 5555556554 237999999764 4455544444
No 15
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.41 E-value=1.6e-13 Score=113.67 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=66.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH------hCCCchhhhhhhhchHHHHHHHHHHHHHHhc---
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSS--- 162 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~------~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~--- 162 (212)
++..|+|+|+|||||||+|+.||+.+|++++++|+++++. .| ..+.+++.. |+..+++.+.+++.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccc
Confidence 4578999999999999999999999999999999999865 23 445555543 554556666566554332
Q ss_pred -CCCEEEEeCCceeec---hhhHH-hcc-----CCeEEEEEechh
Q 028227 163 -MGRLVVCAGNGAVQS---SANLY-EIS-----GTFKTWNIIMDR 197 (212)
Q Consensus 163 -~~~~VVa~GgG~V~~---~~~~~-~L~-----~g~vV~Ld~~~~ 197 (212)
...+|+. | .... ...+. ++. -+.+|||+++.+
T Consensus 82 ~~~~~i~d-g--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e 123 (217)
T 3be4_A 82 CVNGFVLD-G--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDS 123 (217)
T ss_dssp TTTCEEEE-S--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHH
T ss_pred cCCCEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence 2334443 2 1111 11222 221 358999999754
No 16
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.39 E-value=9.7e-14 Score=112.30 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=37.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH-hCCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~-lg~~~~d~D~l~~~~ 131 (212)
++..|+|+|+|||||||+|+.||+. +|++|+|+|+++++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~ 49 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence 4678999999999999999999999 799999999998874
No 17
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.38 E-value=3.4e-12 Score=101.33 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHh---CC-CchhhhhhhhchHHHHHHHHHH---HHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA---GG-ESAAKAFRESDEKGYQQAETEV---LKQ 159 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~---G~-~si~ei~~~~Ge~~fr~~E~~v---L~~ 159 (212)
++..|+|+|+|||||||+++.||+.++ +++++.|+++.+.. |. .+..++.. .....++..+..+ +..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 80 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE 80 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 99999998876543 21 13333322 1122333333322 333
Q ss_pred HhcCCCEEEEeCCceeechhhH------Hhc---cCCeEEEEEechhhh
Q 028227 160 LSSMGRLVVCAGNGAVQSSANL------YEI---SGTFKTWNIIMDRRS 199 (212)
Q Consensus 160 L~~~~~~VVa~GgG~V~~~~~~------~~L---~~g~vV~Ld~~~~~v 199 (212)
+...+.+| .+|.+.+.....+ ..+ ..+++|||+++.+.+
T Consensus 81 ~~~~~~vi-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~ 128 (192)
T 1kht_A 81 MAKESPVA-VDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEI 128 (192)
T ss_dssp HHTTSCEE-EECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHH
T ss_pred hccCCeEE-EccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHH
Confidence 44344444 4566554322211 222 357899999986544
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.36 E-value=6.8e-13 Score=105.84 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCC----CchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~----~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|+|||||||+++.||+.+|++++|+|+++++. .++ ..+.+++.. |+..+++.+.+.+...... ++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-~~ 80 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-RV 80 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS-EE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC-CE
Confidence 4678999999999999999999999999999999988765 221 234444543 5555566666666665543 34
Q ss_pred EEEeCCceeechhhHH----hcc-----CCeEEEEEechh
Q 028227 167 VVCAGNGAVQSSANLY----EIS-----GTFKTWNIIMDR 197 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~----~L~-----~g~vV~Ld~~~~ 197 (212)
|+ .| .+....+.. ++. .+.+|||+++.+
T Consensus 81 i~-dg--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e 117 (186)
T 3cm0_A 81 IF-DG--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEE 117 (186)
T ss_dssp EE-ES--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHH
T ss_pred EE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence 44 33 233222222 232 357999999753
No 19
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.36 E-value=8.6e-13 Score=112.26 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=69.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH--hCCCchhhhhhhhchH-----------------------
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK----------------------- 147 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~--~G~~si~ei~~~~Ge~----------------------- 147 (212)
...|.|.|++||||||+|+.||+++|++|+|.|.+.+.. .| .+. +.+.+.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence 468999999999999999999999999999977655433 23 332 233333332
Q ss_pred --------HHHHHHHHHHHHHhcCCCEEEE-eCCceeec--hhhHHhccCCeEEEEEech-hhhhccc
Q 028227 148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLYEISGTFKTWNIIMD-RRSSRHG 203 (212)
Q Consensus 148 --------~fr~~E~~vL~~L~~~~~~VVa-~GgG~V~~--~~~~~~L~~g~vV~Ld~~~-~~v~R~~ 203 (212)
.+...+.+++++++..+++||+ +|||+|++ +.+ .++++|||+++. .+++|..
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~ 155 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVM 155 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHH
Confidence 1124566788889877889887 77777663 222 357999999975 4555543
No 20
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.35 E-value=8.3e-13 Score=107.41 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=65.0
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCCC----chhhhhhhhchHHHHHHHHHHHHHHhc-
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGGE----SAAKAFRESDEKGYQQAETEVLKQLSS- 162 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~~----si~ei~~~~Ge~~fr~~E~~vL~~L~~- 162 (212)
...++..|+|+|+|||||||+|+.||+.+|++++|+|+++++. .++. .+.+++. .|+..+++.+..++.....
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~ 94 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNN 94 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhc
Confidence 3445789999999999999999999999999999999998763 2212 2333332 2444445555555554332
Q ss_pred ---CCCEEEEeCCceeechhhH----Hhcc-----CCeEEEEEechh
Q 028227 163 ---MGRLVVCAGNGAVQSSANL----YEIS-----GTFKTWNIIMDR 197 (212)
Q Consensus 163 ---~~~~VVa~GgG~V~~~~~~----~~L~-----~g~vV~Ld~~~~ 197 (212)
.+.+|+. |. ....... .++. .+.+|||+++.+
T Consensus 95 ~~~~~~vIld-g~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e 138 (201)
T 2cdn_A 95 PDAANGFILD-GY--PRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 138 (201)
T ss_dssp GGGTTCEEEE-SC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred ccCCCeEEEE-CC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence 2334443 21 1111111 2232 368999999754
No 21
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.34 E-value=1.6e-11 Score=100.21 Aligned_cols=104 Identities=10% Similarity=-0.028 Sum_probs=72.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH-----H-HhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~-----~-~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~ 165 (212)
++..|+|+|++||||||+++.|+..+|+.++|.|.+.. . ..| ....+ ......++..+..++..+.....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~g~~ 103 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRG-IPLTD---EDRWPWLRSLAEWMDARADAGVS 103 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcC-CCCCC---cccccHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999998742 1 223 22211 22344566666666666665566
Q ss_pred EEEEeCCceeechhhHHhccC----CeEEEEEechh-hhhcc
Q 028227 166 LVVCAGNGAVQSSANLYEISG----TFKTWNIIMDR-RSSRH 202 (212)
Q Consensus 166 ~VVa~GgG~V~~~~~~~~L~~----g~vV~Ld~~~~-~v~R~ 202 (212)
+|++++. ....+++.++. ..+|||+++.+ .++|.
T Consensus 104 viid~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl 142 (200)
T 4eun_A 104 TIITCSA---LKRTYRDVLREGPPSVDFLHLDGPAEVIKGRM 142 (200)
T ss_dssp EEEEECC---CCHHHHHHHTTSSSCCEEEEEECCHHHHHHHH
T ss_pred EEEEchh---hhHHHHHHHHHhCCceEEEEEeCCHHHHHHHH
Confidence 7887752 45666776653 58999999865 44443
No 22
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.32 E-value=3.2e-12 Score=105.65 Aligned_cols=100 Identities=9% Similarity=0.062 Sum_probs=64.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH------hCCCchhhhhhhhch----HHHHH-HHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDE----KGYQQ-AETEVLKQLS 161 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~------~G~~si~ei~~~~Ge----~~fr~-~E~~vL~~L~ 161 (212)
+..|+|+|+|||||||+|+.||+.++++++|.|+++++. .| ..+.+++.. |+ +.+.. .+..+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG-KRAKEFMEK-GQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh-HHHHHHHHc-CCcCCHHHHHHHHHHHHhhccc
Confidence 468999999999999999999999999999999998763 22 334444432 22 12222 3333333223
Q ss_pred cCCCEEEEeCCceeechhhHHhcc-----CCeEEEEEechh
Q 028227 162 SMGRLVVCAGNGAVQSSANLYEIS-----GTFKTWNIIMDR 197 (212)
Q Consensus 162 ~~~~~VVa~GgG~V~~~~~~~~L~-----~g~vV~Ld~~~~ 197 (212)
..+++|+ .| ......+...|. .+++|||+++.+
T Consensus 83 ~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~ 120 (222)
T 1zak_A 83 QENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDE 120 (222)
T ss_dssp HHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHH
T ss_pred cCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHH
Confidence 3456777 44 333333344443 278999999754
No 23
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.32 E-value=5.6e-12 Score=100.84 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CC----CchhhhhhhhchHHHHHHHHHHHHH----Hhc
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQ----LSS 162 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~----~si~ei~~~~Ge~~fr~~E~~vL~~----L~~ 162 (212)
++..|+|+|+|||||||+|+.||+.+|++++|.|++++... ++ ..+.+++. .|+..+.+.....+.. ...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999887642 11 23344443 2443333333222222 222
Q ss_pred CCCEEEEeCCceeechhhHHh----cc-CCeEEEEEechh
Q 028227 163 MGRLVVCAGNGAVQSSANLYE----IS-GTFKTWNIIMDR 197 (212)
Q Consensus 163 ~~~~VVa~GgG~V~~~~~~~~----L~-~g~vV~Ld~~~~ 197 (212)
.+..||.-| ........+. +. .+.+|||+++.+
T Consensus 87 ~~~~vi~d~--~~~~~~~~~~~~~~~~~~~~vi~l~~~~e 124 (196)
T 2c95_A 87 TSKGFLIDG--YPREVQQGEEFERRIGQPTLLLYVDAGPE 124 (196)
T ss_dssp TCSCEEEES--CCCSHHHHHHHHHHTCCCSEEEEEECCHH
T ss_pred cCCcEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 233344333 1222222221 23 579999999754
No 24
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.32 E-value=2.3e-13 Score=108.69 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=37.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
++..|+|+|+|||||||+++.||+.+|++++|.|+++++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 4678999999999999999999999999999999998876
No 25
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.30 E-value=6.3e-12 Score=98.87 Aligned_cols=102 Identities=7% Similarity=-0.005 Sum_probs=66.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH-HhCCcEeehhHHHHHHhCCCchh--hhhhhhchHHHHHHHHHHHHHHh---cCCCE
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL 166 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~-~lg~~~~d~D~l~~~~~G~~si~--ei~~~~Ge~~fr~~E~~vL~~L~---~~~~~ 166 (212)
+..|+|+|+|||||||+++.|++ .+|+.+++.|.+.+...+ .+.. +.+...++..+++...++++... ..+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence 35799999999999999999999 699999999998887765 2211 11333455566665556666655 44455
Q ss_pred EEEeCCceeechhhHHhc----c-CC---eEEEEEechh
Q 028227 167 VVCAGNGAVQSSANLYEI----S-GT---FKTWNIIMDR 197 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~L----~-~g---~vV~Ld~~~~ 197 (212)
||..+. ......++.+ + .+ .+|||+++.+
T Consensus 81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~ 117 (181)
T 1ly1_A 81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117 (181)
T ss_dssp EEECSC--CCSHHHHHHHHHHHHHHTCEEEEEECCCCHH
T ss_pred EEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHH
Confidence 554332 2222223322 1 22 6899999764
No 26
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.29 E-value=5.4e-12 Score=100.12 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=63.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CCC----chhhhhhhhchHHHHHHHHHHHHHHhc--CCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSS--MGR 165 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~~----si~ei~~~~Ge~~fr~~E~~vL~~L~~--~~~ 165 (212)
+..|+|+|++||||||+++.|++.+|++++|.|+++.+.. .+. .+.+++.. |+..+.+.+..++..... .+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999887653 212 23333332 333334444445544432 233
Q ss_pred EEEEeCCceeechhhHHhc----c----CCeEEEEEechh
Q 028227 166 LVVCAGNGAVQSSANLYEI----S----GTFKTWNIIMDR 197 (212)
Q Consensus 166 ~VVa~GgG~V~~~~~~~~L----~----~g~vV~Ld~~~~ 197 (212)
.||..| .+....+++.+ . .+.+|||+++.+
T Consensus 85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e 122 (194)
T 1qf9_A 85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122 (194)
T ss_dssp CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHH
T ss_pred CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHH
Confidence 444333 33333333322 2 357999999753
No 27
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.29 E-value=5e-12 Score=104.34 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=63.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCC----CchhhhhhhhchHHHHHHHHHHHHHHhc-----
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS----- 162 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~----~si~ei~~~~Ge~~fr~~E~~vL~~L~~----- 162 (212)
+..|+|+|+|||||||+|+.||+.++++++++|+++++. .++ ..+.+++. .|+..+++.+..++.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhcccc
Confidence 578999999999999999999999999999999998864 221 22334443 2443444444455544332
Q ss_pred CCCEEEEeCCceeechhhHH----hcc-----CCeEEEEEechh
Q 028227 163 MGRLVVCAGNGAVQSSANLY----EIS-----GTFKTWNIIMDR 197 (212)
Q Consensus 163 ~~~~VVa~GgG~V~~~~~~~----~L~-----~g~vV~Ld~~~~ 197 (212)
.+.+|+. | ......... ++. -+.+|||+++.+
T Consensus 83 ~~~~i~d-g--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e 123 (220)
T 1aky_A 83 KNGFILD-G--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123 (220)
T ss_dssp GSCEEEE-S--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHH
T ss_pred CCCeEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence 2345543 2 111111111 222 348999999753
No 28
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.29 E-value=9.1e-13 Score=119.30 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--------------HHHHhCCC-----chhhh-hhhhchHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ 151 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--------------~~~~~G~~-----si~ei-~~~~Ge~~fr~ 151 (212)
++..|+|+||+||||||||..||++++..++|+|.+ .++..| . ++.++ .+..+...|++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence 356899999999999999999999999999999998 344444 2 44555 56778899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCceee
Q 028227 152 AETEVLKQLSSMGRLVVCAGNGAVQ 176 (212)
Q Consensus 152 ~E~~vL~~L~~~~~~VVa~GgG~V~ 176 (212)
.+.++++++...+..+|.+||+.++
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglY 142 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSF 142 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHH
Confidence 9999999998888899999886543
No 29
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.28 E-value=6.5e-12 Score=99.80 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=37.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
++..|+|+|+|||||||+|+.||+.+|++++|.|+++++..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~ 42 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER 42 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence 56789999999999999999999999999999999987654
No 30
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=98.82 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=62.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--C---CCchhhhhhhhchHHHHHHHHHH----HHHHhcC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEV----LKQLSSM 163 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G---~~si~ei~~~~Ge~~fr~~E~~v----L~~L~~~ 163 (212)
+..|+|+|+|||||||+|+.||+.+|++++|.|+++.+.. + +..+.+++. .|+..+.+..... +......
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccccc
Confidence 5789999999999999999999999999999999987654 2 022334443 2332222222222 2222222
Q ss_pred CCEEEEeCCceeechhhHHhc-----cCCeEEEEEechh
Q 028227 164 GRLVVCAGNGAVQSSANLYEI-----SGTFKTWNIIMDR 197 (212)
Q Consensus 164 ~~~VVa~GgG~V~~~~~~~~L-----~~g~vV~Ld~~~~ 197 (212)
+..||..| .+....++..+ ..+.+|||+++.+
T Consensus 91 ~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~ 127 (199)
T 2bwj_A 91 TRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSAD 127 (199)
T ss_dssp CSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHH
T ss_pred CccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 34444433 33333333322 2478999999764
No 31
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.28 E-value=1.2e-11 Score=102.70 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=46.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK 147 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~ 147 (212)
.......|.|+|++||||||+|+.|++.+|++++|+|.+.++.++ ....++++..|+.
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG~~ 65 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFGGS 65 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHCGG
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhChh
Confidence 344467899999999999999999999999999999999888765 3445555555544
No 32
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.26 E-value=3.3e-11 Score=96.09 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G 133 (212)
++..|+|+|+|||||||+++.|++.+|+++++.|.+.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~ 45 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD 45 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHH
Confidence 467899999999999999999999999999999999876653
No 33
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.25 E-value=9.4e-12 Score=104.07 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=63.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--C---CCchhhhhhhhchHHHHHHHHHHHHHHhcC---
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQLSSM--- 163 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G---~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~--- 163 (212)
++..|+|+|+|||||||+|+.||+.++++++++|+++++.. + +..+.+++. .|+..+++.+.+++......
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999987742 1 023334442 24333455555555543322
Q ss_pred -CCEEEEeCCceeechhhH----Hhc-----cCCeEEEEEechh
Q 028227 164 -GRLVVCAGNGAVQSSANL----YEI-----SGTFKTWNIIMDR 197 (212)
Q Consensus 164 -~~~VVa~GgG~V~~~~~~----~~L-----~~g~vV~Ld~~~~ 197 (212)
+++|+. |. ....... +++ ..+.+|||+++.+
T Consensus 94 ~~g~ild-g~--~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e 134 (233)
T 1ak2_A 94 KNGFLLD-GF--PRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 134 (233)
T ss_dssp TTCEEEE-SC--CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHH
T ss_pred cCcEEEe-CC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence 234442 21 1111111 122 2478999999753
No 34
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.19 E-value=3.5e-11 Score=102.81 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=67.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH---hCCcEe--ehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEE
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLV 167 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~---lg~~~~--d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~V 167 (212)
+..|+|+|+|||||||+|+.|++. +|++++ |.|.+.+...+ +...++..++..+...++..... ..|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~v 75 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YWV 75 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CEE
Confidence 468999999999999999999998 899988 99988754332 34456777777777777766555 545
Q ss_pred EEeCCceeechhhHHhcc--------CCeEEEEEechh
Q 028227 168 VCAGNGAVQSSANLYEIS--------GTFKTWNIIMDR 197 (212)
Q Consensus 168 Va~GgG~V~~~~~~~~L~--------~g~vV~Ld~~~~ 197 (212)
|..+ ......+++.+. .+.+|||+++.+
T Consensus 76 IiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e 111 (260)
T 3a4m_A 76 IVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLD 111 (260)
T ss_dssp EECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHH
T ss_pred EEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHH
Confidence 5433 233344444332 257999999754
No 35
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.18 E-value=5.1e-11 Score=98.02 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=35.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+|+|+|+|||||||+++.||+.+|++++++|+++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~ 38 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAA 38 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHH
Confidence 6899999999999999999999999999999998874
No 36
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.18 E-value=5.2e-11 Score=97.37 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=35.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
.|+|+|+|||||||+++.||+.+|++++++|+++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~ 39 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAI 39 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHH
Confidence 68999999999999999999999999999999988753
No 37
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.17 E-value=6.7e-11 Score=98.57 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=35.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
.|+|+|+|||||||+++.||+.+|++++++|+++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~ 38 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREH 38 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHH
Confidence 6899999999999999999999999999999998876
No 38
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.16 E-value=5e-11 Score=96.88 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=59.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCchhhhhhhh-chHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRES-DEKGYQQAETEVLKQLSSMGRLVVCA 170 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~si~ei~~~~-Ge~~fr~~E~~vL~~L~~~~~~VVa~ 170 (212)
...|+|+|++||||||+++.|++.+|+.++|.|.+...... .......+... .+..++..+ ..+.....+|+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~----~~~~~~~~vivd~ 93 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIG----ERLASREPVVVSC 93 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHH----HHHTSSSCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHH----HHHhcCCCEEEEC
Confidence 46899999999999999999999999999999998532100 00001112111 222232222 2223344567765
Q ss_pred CCceeechhhHHhccC-----CeEEEEEechh
Q 028227 171 GNGAVQSSANLYEISG-----TFKTWNIIMDR 197 (212)
Q Consensus 171 GgG~V~~~~~~~~L~~-----g~vV~Ld~~~~ 197 (212)
+. .....++.+.. ..+|||+++.+
T Consensus 94 ~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e 122 (202)
T 3t61_A 94 SA---LKRSYRDKLRESAPGGLAFVFLHGSES 122 (202)
T ss_dssp CC---CSHHHHHHHHHTSTTCCEEEEEECCHH
T ss_pred CC---CCHHHHHHHHHhcCCCeEEEEEeCCHH
Confidence 43 34455555541 58999999754
No 39
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.15 E-value=6.5e-11 Score=96.96 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=35.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+|+|+|+|||||||+++.||+.+|++++++|+++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~ 38 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAA 38 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 6899999999999999999999999999999998875
No 40
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.15 E-value=2.8e-12 Score=105.15 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=36.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~ 130 (212)
++..|.|+|++||||||+++.||+.+|++++|+|.++++
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 467899999999999999999999999999999999875
No 41
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.13 E-value=1.3e-11 Score=97.80 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe-ehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~-d~D 125 (212)
++..|+|+|+|||||||+|+.||+.+|++++ |.|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~ 38 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE 38 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh
Confidence 4678999999999999999999999999998 644
No 42
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.13 E-value=1.6e-10 Score=97.86 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 81 KKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 81 k~~~~~~~~~l-~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
.+.+.+....+ ++..|+|+|+|||||||+++.|++.+|++++++|+++++..
T Consensus 16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~ 68 (243)
T 3tlx_A 16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAA 68 (243)
T ss_dssp HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHH
Confidence 33344433333 57899999999999999999999999999999999988753
No 43
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.13 E-value=5e-11 Score=112.52 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=69.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcE-----eehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHH------h
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY-----FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL------S 161 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~-----~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L------~ 161 (212)
+..|+|+|+|||||||+|+.||+.+++.+ ++.|++.++..+.....++|...+++.|+..|..+...+ .
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L 114 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL 114 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999996655 567999998887334567888888888876555433322 1
Q ss_pred --cCCCEEE--EeCCceeechhhHHhcc-CC-eEEEEEe
Q 028227 162 --SMGRLVV--CAGNGAVQSSANLYEIS-GT-FKTWNII 194 (212)
Q Consensus 162 --~~~~~VV--a~GgG~V~~~~~~~~L~-~g-~vV~Ld~ 194 (212)
..+..|| +++++.......++.++ .+ .++||++
T Consensus 115 ~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~ 153 (520)
T 2axn_A 115 AKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIES 153 (520)
T ss_dssp HHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3455555 45444444444455554 35 4677765
No 44
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.12 E-value=7e-10 Score=89.75 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
...|+|+|++||||||+++.||+.+|++++|+|+++++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~ 53 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAE 53 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHH
Confidence 468999999999999999999999999999999998765
No 45
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.09 E-value=6.5e-10 Score=94.32 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCch----hhhhhhhch----HHHHHHHHHHHHHHhc
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESA----AKAFRESDE----KGYQQAETEVLKQLSS 162 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~si----~ei~~~~Ge----~~fr~~E~~vL~~L~~ 162 (212)
+++.|+|+|+|||||+|+|+.||+.+|++++++++++.+... +..+ .++++ .|+ +...+.-.+.+.+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence 456788999999999999999999999999999998876542 1222 22221 232 1122222222333222
Q ss_pred -CCCEEEEeCCceeechhhHHhc-----cCCeEEEEEechhhhhccc
Q 028227 163 -MGRLVVCAGNGAVQSSANLYEI-----SGTFKTWNIIMDRRSSRHG 203 (212)
Q Consensus 163 -~~~~VVa~GgG~V~~~~~~~~L-----~~g~vV~Ld~~~~~v~R~~ 203 (212)
..++|+. |.+-+....+.| .-+.+|+|+++.+.+.+++
T Consensus 107 ~~~g~ilD---GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl 150 (217)
T 3umf_A 107 KNCHFLID---GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRL 150 (217)
T ss_dssp TCSEEEEE---TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred cccCcccc---cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHH
Confidence 2346663 444333322323 2578999999875444433
No 46
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.09 E-value=1.5e-10 Score=95.17 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg------~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~ 165 (212)
++..|+|+|++||||||+++.|++.++ +.++|.|.+.+...+ .. .+....++..|+.... ++..+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~--~~-~~~~~~r~~~~~~~~~-~~~~~l~~g~ 99 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK--DL-GFSEADRNENIRRIAE-VAKLFADSNS 99 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT--TC-CSSHHHHHHHHHHHHH-HHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc--cc-CCCHHHHHHHHHHHHH-HHHHHHHCCC
Confidence 478999999999999999999999887 888998887643321 11 1222445566665543 3444444567
Q ss_pred EEEEeCCceeechhhHHhcc--------------CCeEEEEEechhhh
Q 028227 166 LVVCAGNGAVQSSANLYEIS--------------GTFKTWNIIMDRRS 199 (212)
Q Consensus 166 ~VVa~GgG~V~~~~~~~~L~--------------~g~vV~Ld~~~~~v 199 (212)
+||+... .. ...++++++ .+.+|||+++.+.+
T Consensus 100 ~VI~d~~-~~-~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~ 145 (211)
T 1m7g_A 100 IAITSFI-SP-YRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA 145 (211)
T ss_dssp EEEEECC-CC-CHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH
T ss_pred EEEEecC-Cc-cHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHH
Confidence 7776632 22 123344332 15799999986533
No 47
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.09 E-value=9.1e-11 Score=94.23 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
++..|.|+|++||||||+|+.||+. |++++|+|.++++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 3578999999999999999999998 999999999987665
No 48
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.08 E-value=5.2e-11 Score=96.54 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=35.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
..|.|+|++||||||+++.||+ +|++++|+|.++++.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~ 39 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFY 39 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHh
Confidence 3799999999999999999999 9999999999988654
No 49
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.07 E-value=1.3e-09 Score=86.14 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=34.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA 132 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~ 132 (212)
+.|+|+|+|||||||+++.|++.++ +.+++.|+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 4689999999999999999999998 89999888886544
No 50
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.07 E-value=1.6e-10 Score=91.76 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=30.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---CCcEeehhH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS 126 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~ 126 (212)
.|+|+|++||||||+++.|++.+ |++++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 58999999999999999999998 999999874
No 51
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.06 E-value=4.3e-10 Score=95.50 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=63.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhHHHH---------HHhCCCchhhhhhhhchHHHHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF---------EAAGGESAAKAFRESDEKGYQQAETEVLKQL 160 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~l~~---------~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L 160 (212)
++..|+|+|+|||||||+++.|++.++ +.++|.|.+.+ ...| ....+++.. .+......+++.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTKL 105 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHHH
Confidence 467899999999999999999999987 67889998733 2233 333333321 1334445666666
Q ss_pred hcC-CCEEEEeCCcee-echhhHHhcc-CCeE---EEEEec
Q 028227 161 SSM-GRLVVCAGNGAV-QSSANLYEIS-GTFK---TWNIIM 195 (212)
Q Consensus 161 ~~~-~~~VVa~GgG~V-~~~~~~~~L~-~g~v---V~Ld~~ 195 (212)
... .++||+++.+.. ....+...++ .+.. ||++++
T Consensus 106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~ 146 (253)
T 2p5t_B 106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK 146 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 654 478887655433 2344455555 5654 455665
No 52
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.05 E-value=8.9e-10 Score=89.81 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|++||||||+++.||..+ |.. ++|.|.+...... .+. +..+.....++. ...+...+...+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 99 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR--DLS-FKAEDRAENIRR-VGEVAKLFADAGII 99 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT--TCC-SSHHHHHHHHHH-HHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc--ccC-cChHHHHHHHHH-HHHHHHHHHhCCce
Confidence 57899999999999999999999998 666 9999988653211 110 111111222322 22344444445556
Q ss_pred EEEeCCceeechhhHHhcc----C--CeEEEEEechh-hhhc
Q 028227 167 VVCAGNGAVQSSANLYEIS----G--TFKTWNIIMDR-RSSR 201 (212)
Q Consensus 167 VVa~GgG~V~~~~~~~~L~----~--g~vV~Ld~~~~-~v~R 201 (212)
||.+..+. ....++.++ . .++|||+++.+ +.+|
T Consensus 100 vi~~~~~~--~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R 139 (200)
T 3uie_A 100 CIASLISP--YRTDRDACRSLLPEGDFVEVFMDVPLSVCEAR 139 (200)
T ss_dssp EEEECCCC--CHHHHHHHHHTSCTTSEEEEEECCCHHHHHHH
T ss_pred EEEecCCc--hHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHh
Confidence 66543322 233444443 2 25699999754 4444
No 53
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.05 E-value=1.1e-09 Score=89.94 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=41.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--CCCchhhhhhhhc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESD 145 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G~~si~ei~~~~G 145 (212)
+..|.|+|++||||||+++.|++ +|++++|+|.+.++.. |...+.++++..|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g 57 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFG 57 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhH
Confidence 56899999999999999999998 9999999999988754 2233444444444
No 54
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.04 E-value=3e-10 Score=96.71 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=36.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~ 130 (212)
++..|.|+|++||||||+++.||++||+.++|.|.++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 467999999999999999999999999999999999844
No 55
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.04 E-value=4.2e-10 Score=94.35 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=35.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+.|+|+|||||||+|+|+.||+++|++++++.+++.+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~ 38 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREA 38 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHH
Confidence 36899999999999999999999999999999988765
No 56
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.04 E-value=4.1e-10 Score=91.52 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=40.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhchH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK 147 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge~ 147 (212)
..|.|+|++||||||+++.||+ +|++++|+|.+.++... ...+.++++..|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~ 57 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQ 57 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHH
Confidence 4689999999999999999998 99999999999876431 12334455555543
No 57
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.04 E-value=5.3e-10 Score=87.16 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=34.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
..|+|+|++||||||+++.||+.+|++++|.|.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~ 39 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK 39 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccch
Confidence 37899999999999999999999999999999987753
No 58
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.04 E-value=7e-10 Score=88.45 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=59.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehh--HHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSD--SLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D--~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
++..|+|+|++||||||+++.|++.+ |+++++.| .+...... ... +....++..|++.+.. ...+...+ .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~ 78 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK--NLG-FSPEDREENVRRIAEV-AKLFADAG-L 78 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT--TCC-SSHHHHHHHHHHHHHH-HHHHHHTT-C
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh--ccc-cccccHHHHHHHHHHH-HHHHHHCC-C
Confidence 57889999999999999999999998 98888554 43221111 000 1112345666665532 22232333 3
Q ss_pred EEEeCCce-ee---chhhHHhcc-CC---eEEEEEechh-hhhc
Q 028227 167 VVCAGNGA-VQ---SSANLYEIS-GT---FKTWNIIMDR-RSSR 201 (212)
Q Consensus 167 VVa~GgG~-V~---~~~~~~~L~-~g---~vV~Ld~~~~-~v~R 201 (212)
++.++ +. +. ...++++++ .+ .+|||+++.+ .++|
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R 121 (179)
T 2pez_A 79 VCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121 (179)
T ss_dssp EEEEE-CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHH
T ss_pred EEEEe-cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHH
Confidence 44333 22 22 122333333 33 7899999754 3344
No 59
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.02 E-value=1.8e-11 Score=102.53 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=37.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~ 130 (212)
.++..|.|+|++||||||+++.||+.+|++++|+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 3578999999999999999999999999999999999875
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.02 E-value=1.8e-10 Score=94.45 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=36.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+..|.|+|++||||||+++.|++.+|++++|+|+++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL 43 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence 468999999999999999999999999999999998753
No 61
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.02 E-value=1.2e-10 Score=98.59 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc----------EeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~----------~~d~D~l~~ 129 (212)
+...|.|+|++||||||+|+.||+.+|++ ++|+|++++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 45689999999999999999999999998 799999875
No 62
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.01 E-value=6.5e-10 Score=89.15 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=58.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhh-chHHHHHHHHHHHHHHhcCC
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRES-DEKGYQQAETEVLKQLSSMG 164 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~-Ge~~fr~~E~~vL~~L~~~~ 164 (212)
.++..|+|+|++||||||+++.||+.++ +.++|.|.+.+...+.. .+... .+..++.. ..+.+.+...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~r~~~~~~~-~~~~~~~~~~g 85 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGA----GFTREERLRHLKRI-AWIARLLARNG 85 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTC----CCCHHHHHHHHHHH-HHHHHHHHTTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhcc----CCChhhHHHHHHHH-HHHHHHHHhCC
Confidence 3578899999999999999999999885 46789998855333210 11111 11122211 12223334445
Q ss_pred CEEEEeCCceee---chhhHHhcc----CCeEEEEEechh
Q 028227 165 RLVVCAGNGAVQ---SSANLYEIS----GTFKTWNIIMDR 197 (212)
Q Consensus 165 ~~VVa~GgG~V~---~~~~~~~L~----~g~vV~Ld~~~~ 197 (212)
.+||+.+ .... ....++++. .+.+|||+++.+
T Consensus 86 ~~vi~d~-~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e 124 (186)
T 2yvu_A 86 VIVICSF-VSPYKQARNMVRRIVEEEGIPFLEIYVKASLE 124 (186)
T ss_dssp CEEEEEC-CCCCHHHHHHHHHHHHHTTCCEEEEEEECCHH
T ss_pred CEEEEeC-ccccHHHHHHHHHHhhccCCCeEEEEEeCCHH
Confidence 5666543 2221 122333333 258999999754
No 63
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.01 E-value=4e-10 Score=96.92 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=64.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CCC----chhhhhhhhchHHHHHHHHHHHHH-Hhc---C
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQ-LSS---M 163 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~~----si~ei~~~~Ge~~fr~~E~~vL~~-L~~---~ 163 (212)
...+.|+|+|||||||+++.||+.+|++++++|+++++.. .+. .+.+++. .|+....+....++++ |.. .
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccC
Confidence 5688999999999999999999999999999999988642 112 2333333 2433333333344433 322 3
Q ss_pred CCEEEEeCCceeechhhHHhcc-----CCeEEEEEechh
Q 028227 164 GRLVVCAGNGAVQSSANLYEIS-----GTFKTWNIIMDR 197 (212)
Q Consensus 164 ~~~VVa~GgG~V~~~~~~~~L~-----~g~vV~Ld~~~~ 197 (212)
++||+. |.+......+.|. -+.||||+++.+
T Consensus 87 ~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e 122 (230)
T 3gmt_A 87 NGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFS 122 (230)
T ss_dssp TCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHH
T ss_pred CCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHH
Confidence 567773 3443333333343 468999999864
No 64
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.00 E-value=8.9e-10 Score=94.48 Aligned_cols=101 Identities=7% Similarity=0.004 Sum_probs=59.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHhCCCchhh--hhhhhchHHHHHHHHHHHHHHh---cCCCEE
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK--AFRESDEKGYQQAETEVLKQLS---SMGRLV 167 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~~~G~~si~e--i~~~~Ge~~fr~~E~~vL~~L~---~~~~~V 167 (212)
..|+|+|+|||||||+++.|++.+ |+.+++.|.+.+...+ ..... -+...++..+.+...+.+.... ..+..|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v 81 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEE
Confidence 579999999999999999999984 9999999987776654 21110 1112233333333334444444 344444
Q ss_pred EEeCCceeechhhHHhc----c-CC---eEEEEEechh
Q 028227 168 VCAGNGAVQSSANLYEI----S-GT---FKTWNIIMDR 197 (212)
Q Consensus 168 Va~GgG~V~~~~~~~~L----~-~g---~vV~Ld~~~~ 197 (212)
|..|. ......++.+ + .+ .+|||+++.+
T Consensus 82 i~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e 117 (301)
T 1ltq_A 82 IISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117 (301)
T ss_dssp EECSC--CCCHHHHHHHHHHHHHTTCEEEEEECCCCHH
T ss_pred EEeCC--CCCHHHHHHHHHHHHHcCCcEEEEEEECCHH
Confidence 44332 2222223322 1 22 6899999754
No 65
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.99 E-value=1.9e-10 Score=103.34 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=64.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCc--------------------hhhhhhhhchHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQAE 153 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~s--------------------i~ei~~~~Ge~~fr~~E 153 (212)
..|+|+|++||||||+|+.||+.+++.+++.|.+.... | ++ +.++....++..|++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 57999999999999999999999999999999874321 1 22 23445667889999999
Q ss_pred HHHHHHHhcCCCEEEEeCCce
Q 028227 154 TEVLKQLSSMGRLVVCAGNGA 174 (212)
Q Consensus 154 ~~vL~~L~~~~~~VVa~GgG~ 174 (212)
.++++++...+..+|.+||+.
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHcCCeEEEECCch
Confidence 999999988888888888764
No 66
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.98 E-value=2.3e-10 Score=97.79 Aligned_cols=99 Identities=9% Similarity=-0.040 Sum_probs=61.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH---hC--CCchh-------------hhhh-hhchHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AG--GESAA-------------KAFR-ESDEKGYQQAET 154 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~---~G--~~si~-------------ei~~-~~Ge~~fr~~E~ 154 (212)
+.|+|+|++||||||+|+.||+.+++++++.|.+.... .+ ..... +..+ ..+...|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 36899999999999999999999999999999975311 01 00000 1111 245567877777
Q ss_pred HHHHHHhcCCCEEEEeCCceeechhhHHhcc-----CC---eEEEEEech
Q 028227 155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS-----GT---FKTWNIIMD 196 (212)
Q Consensus 155 ~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~-----~g---~vV~Ld~~~ 196 (212)
..+ ++...+..||.+|++.. ...+++. .+ .+|||+++.
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~---~~~~~~~~~~~~~~~~~~~i~l~~~~ 127 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSIS---LLNCMAKSPFWRSGFQWHVKRLRLGD 127 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHH---HHHHHHHCTTTTSSCEEEEEECCCCC
T ss_pred HHH-HHHhCCCCeEEeccHHH---HHHHHHhcccccccCceEEEEecchh
Confidence 777 66555554454443221 1122222 22 689999874
No 67
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.96 E-value=2e-09 Score=104.32 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=67.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHhCCCchhhhhh-hhchHHHHHHHHHHHHHHhcCCCE
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~~~~G~~si~ei~~-~~Ge~~fr~~E~~vL~~L~~~~~~ 166 (212)
+++..|+|+|++||||||+|+.|++.| |++++++|....+. + ......+. +.+++.|++.. ++.+.+...+.+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-~-L~~~~~fs~~dree~~r~i~-eva~~~l~~G~i 126 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIA-EVAKLFADAGLV 126 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-T-TTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-c-cCccccCChhhhHHHHHHHH-HHHHHHHhCCCE
Confidence 467899999999999999999999999 99988776433321 2 22223344 45677787763 355555555556
Q ss_pred EEEeCCceee---chhhHHhcc-C---CeEEEEEechhh
Q 028227 167 VVCAGNGAVQ---SSANLYEIS-G---TFKTWNIIMDRR 198 (212)
Q Consensus 167 VVa~GgG~V~---~~~~~~~L~-~---g~vV~Ld~~~~~ 198 (212)
||+. .+.+. ...++++++ . .++|||+++.+.
T Consensus 127 VI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Ev 164 (630)
T 1x6v_B 127 CITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHV 164 (630)
T ss_dssp EEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHH
T ss_pred EEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHH
Confidence 6643 33332 234445554 3 359999997643
No 68
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.95 E-value=3.8e-09 Score=84.96 Aligned_cols=37 Identities=27% Similarity=0.224 Sum_probs=35.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
.|.|+|++||||||+|+.||+.+|++++|.|.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 7999999999999999999999999999999998764
No 69
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.93 E-value=3.6e-10 Score=90.96 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~ 126 (212)
++..|+|+|++||||||+++.|++.+ |+++++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 47889999999999999999999998 688888764
No 70
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.92 E-value=1.2e-09 Score=104.10 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg------~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~ 165 (212)
++..|+|+|++||||||+++.||..++ +.++|.|.+.+.+.+ .+. +-...++..++. ...+.+.+...++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~--~l~-f~~~~r~~~~r~-i~~v~q~l~~~~~ 443 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS--ELG-FSKAHRDVNVRR-IGFVASEITKNRG 443 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS--SCC-CSHHHHHHHHHH-HHHHHHHHHHTTC
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc--ccC-CCHHHHHHHHHH-HHHHHHHHHhcCC
Confidence 578999999999999999999999984 567999998765322 221 111123334443 3556677766778
Q ss_pred EEEEeCCc--eeechhhHHhcc-CC--eEEEEEechhh
Q 028227 166 LVVCAGNG--AVQSSANLYEIS-GT--FKTWNIIMDRR 198 (212)
Q Consensus 166 ~VVa~GgG--~V~~~~~~~~L~-~g--~vV~Ld~~~~~ 198 (212)
.|++++++ ......++++++ .+ ++|||+++.+.
T Consensus 444 ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~ 481 (552)
T 3cr8_A 444 IAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIET 481 (552)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----
T ss_pred EEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHH
Confidence 88876643 334456677776 56 89999987543
No 71
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.91 E-value=2.4e-10 Score=105.62 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=51.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh-----hHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-----DSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL 160 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~-----D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L 160 (212)
+..|+|+|+|||||||+++.||+.+++.++|+ |.+.++..|.....++++..|++.++..|..++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999987665554 457777776323457888889887776666544443
No 72
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.90 E-value=3.4e-09 Score=88.97 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=35.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~ 130 (212)
++..|+|+|++||||||+++.||+.+|+.+++.|+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 367999999999999999999999999999999988765
No 73
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.88 E-value=6.3e-09 Score=90.69 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=62.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHhCCCchhhhhhhhc-------hHHHHHHHHHHHHHHh-
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESD-------EKGYQQAETEVLKQLS- 161 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l--g~~~~d~D~l~~~~~G~~si~ei~~~~G-------e~~fr~~E~~vL~~L~- 161 (212)
++..|+|+|+|||||||+++.|++.+ ++.+++.|.+.....+ ..++....+ ..+|......+++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD 108 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999998 8999999988643222 111111111 2344454445555544
Q ss_pred cCCCEEEEeCCceee-chhhHHhcc-CC---eEEEEEechh
Q 028227 162 SMGRLVVCAGNGAVQ-SSANLYEIS-GT---FKTWNIIMDR 197 (212)
Q Consensus 162 ~~~~~VVa~GgG~V~-~~~~~~~L~-~g---~vV~Ld~~~~ 197 (212)
...++|+.+..+... ....++.++ .+ .++|+.++.+
T Consensus 109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~ 149 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 149 (287)
T ss_dssp HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHH
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHH
Confidence 355677754433221 123344444 33 3677887654
No 74
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.87 E-value=1.9e-08 Score=87.19 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=34.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~ 132 (212)
+..|+|+|++||||||+|+.|+ .+|++++|+|.+.++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~ 113 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY 113 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh
Confidence 4579999999999999999999 68999999999976543
No 75
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.83 E-value=1.1e-08 Score=87.64 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
++..|.|+|++||||||+++.||+.+|+.++|.|.++...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 3578999999999999999999999999999999997654
No 76
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.82 E-value=4e-09 Score=85.29 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
++..|+|+|++||||||+++.|++.++.++++.|
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 5789999999999999999999999987777664
No 77
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.82 E-value=4.2e-09 Score=84.15 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=27.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
.|+|+|++||||||+++.||+.+++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 68999999999999999999999998875
No 78
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.81 E-value=2.1e-09 Score=98.31 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=58.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G 171 (212)
++..|+|+|+|||||||+++.|++.+++.++|.|.+ + .|+.....+.+.+.....+||.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~--------------~~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G--------------SWQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C--------------SHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H--------------HHHHHHHHHHHHHhcCCcEEEeCC
Confidence 367899999999999999999999999999999985 1 123344445555665566777654
Q ss_pred Ccee-echhhHHhcc-CC---eEEEEEechh
Q 028227 172 NGAV-QSSANLYEIS-GT---FKTWNIIMDR 197 (212)
Q Consensus 172 gG~V-~~~~~~~~L~-~g---~vV~Ld~~~~ 197 (212)
+... .....+++++ .+ .+|||+++.+
T Consensus 318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e 348 (416)
T 3zvl_A 318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIE 348 (416)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHH
Confidence 4221 1222223333 23 6899998753
No 79
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.81 E-value=2.8e-08 Score=79.73 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=28.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCc--Eee
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFD 123 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~--~~d 123 (212)
+++..|+|+|+|||||||+++.||+.++.. +++
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 457889999999999999999999999874 554
No 80
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.80 E-value=1.2e-08 Score=81.81 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC-cEeehhHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFE 130 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~-~~~d~D~l~~~ 130 (212)
+..|+|+|++||||||+++.|+..++. .+++.|++.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~ 40 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM 40 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh
Confidence 457899999999999999999998875 89999988653
No 81
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.77 E-value=3.9e-10 Score=102.77 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=58.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcE--------------------eehhHHHHHHhCCCchhhhhhhhchHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~--------------------~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E 153 (212)
.+|+|+|+|||||||+++.||+.++++| +|+|..+++..| +++.++|++.|+ .||+.|
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E 102 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE 102 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence 4699999999999999999999999999 999999998887 889999999999 999988
Q ss_pred HHHHHH
Q 028227 154 TEVLKQ 159 (212)
Q Consensus 154 ~~vL~~ 159 (212)
...++.
T Consensus 103 ~~~~~~ 108 (359)
T 2ga8_A 103 DVNFQP 108 (359)
T ss_dssp CTTCCC
T ss_pred hhhccc
Confidence 876653
No 82
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.74 E-value=1.1e-08 Score=81.66 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---CCcEeehhH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS 126 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~ 126 (212)
.|+|+|++||||||+++.|++.+ |++++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 58999999999999999999999 999997654
No 83
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.72 E-value=5e-09 Score=84.71 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
++..|+|+|++||||||+++.|++.++..+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 478999999999999999999999886555443
No 84
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.70 E-value=3.9e-08 Score=93.95 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=61.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHhCCCchhhhhhh-hchHHHHHHHHHHHHHHhcCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMG 164 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg------~~~~d~D~l~~~~~G~~si~ei~~~-~Ge~~fr~~E~~vL~~L~~~~ 164 (212)
++..|+|+|++||||||+|+.|++.|+ +.++|.|.+.....+.. .|.. ...+.++.. .++++.+...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~----~f~~~er~~~i~ri-~~v~~~~~~~g 469 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSEL----GFTREDRHTNIQRI-AFVATELTRAG 469 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTC----CCSHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcccc----CCChhHHHHHHHHH-HHHHHHHHhCC
Confidence 357899999999999999999999987 35678888766433211 1111 111222222 34666666667
Q ss_pred CEEEEeCCcee--echhhHHhccC-C--eEEEEEechh
Q 028227 165 RLVVCAGNGAV--QSSANLYEISG-T--FKTWNIIMDR 197 (212)
Q Consensus 165 ~~VVa~GgG~V--~~~~~~~~L~~-g--~vV~Ld~~~~ 197 (212)
.+||++.-... ....++++++. + ++|||+++.+
T Consensus 470 ~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~e 507 (573)
T 1m8p_A 470 AAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLE 507 (573)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHH
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHH
Confidence 77876522110 01234444543 5 8999999754
No 85
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.68 E-value=6.2e-09 Score=85.02 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|+|+|++||||||+++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999999988
No 86
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.68 E-value=2.3e-08 Score=84.68 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=46.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--CCCchhhhhhhhchHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGY 149 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G~~si~ei~~~~Ge~~f 149 (212)
-.|.|+|.+||||||+++.|++ +|++++|+|.+.++.. |+..+.++++.+|++.|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~ 66 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFV 66 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhc
Confidence 4789999999999999999998 9999999999998876 33556677777776544
No 87
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.63 E-value=1e-07 Score=90.58 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=59.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhc-hHHHHHHHHHHHHHHhcCCCE
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGRL 166 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~G-e~~fr~~E~~vL~~L~~~~~~ 166 (212)
+..|+|+|++||||||+|+.|++.++ +.++|.|.+.+...+.. .|.... ...++.. .++...+...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~----~f~~~er~~~l~~i-~~~~~~~l~~G~~ 446 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL----GFSKEDRITNILRV-GFVASEIVKHNGV 446 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTC----CSSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccc----cccHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence 57899999999999999999999887 48899998766544311 121111 1112221 1233444444555
Q ss_pred EEEeCCceeech----hhHHhcc-CC-eEEEEEechhh
Q 028227 167 VVCAGNGAVQSS----ANLYEIS-GT-FKTWNIIMDRR 198 (212)
Q Consensus 167 VVa~GgG~V~~~----~~~~~L~-~g-~vV~Ld~~~~~ 198 (212)
||..+. .... .++++++ .+ ++|||+++.+.
T Consensus 447 VI~d~~--~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~ 482 (546)
T 2gks_A 447 VICALV--SPYRSARNQVRNMMEEGKFIEVFVDAPVEV 482 (546)
T ss_dssp EEEECC--CCCHHHHHHHHTTSCTTCEEEEEEECCGGG
T ss_pred EEEEcC--CCCHHHHHHHHHHhhcCCEEEEEEeCCHHH
Confidence 554421 1122 2334444 35 89999997643
No 88
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.61 E-value=2.3e-08 Score=90.37 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=65.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHH------------HhCC----CchhhhhhhhchHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFE------------AAGG----ESAAKAFRESDEKGYQQAETE 155 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~------------~~G~----~si~ei~~~~Ge~~fr~~E~~ 155 (212)
..|+|+|++||||||+|+.||+.++..+++.|.+ +.. ..+. .++.+.........|.+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 5799999999999999999999999999999997 221 1110 011222234556778887778
Q ss_pred HHHHHhcCCCEEEEeCCceeechhhHHhccCCeEEEEE-echh
Q 028227 156 VLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNI-IMDR 197 (212)
Q Consensus 156 vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld-~~~~ 197 (212)
.+..+...+..||.+||+..+... +..++.+|.+ .+.+
T Consensus 88 ~i~~i~~~g~~~IlvGGt~ly~~~----l~~~l~~~~~~~d~~ 126 (340)
T 3d3q_A 88 YIKDITRRGKVPIIAGGTGLYIQS----LLYNYAFEDESISED 126 (340)
T ss_dssp HHHHHHHTTCEEEEECCCHHHHHH----HHBCSCCC---CCHH
T ss_pred HHHHHHhCCCcEEEECChhhhHHH----HHhcccccCCCCChH
Confidence 888877667778878775543222 2234446777 5443
No 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.56 E-value=1.9e-07 Score=74.25 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc--EeehhHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFE 130 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~--~~d~D~l~~~ 130 (212)
+|..|+|+|++||||||+++.||..++.. ++|.|++.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~ 48 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 48 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence 57899999999999999999999876554 8899988653
No 90
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.55 E-value=1e-07 Score=77.45 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=34.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~ 129 (212)
+..|.|+|++||||||+++.|++.+ ++.+++.|.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 5789999999999999999999988 899999999865
No 91
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.39 E-value=6.3e-07 Score=84.88 Aligned_cols=77 Identities=9% Similarity=0.048 Sum_probs=52.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC-------cEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~-------~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~ 164 (212)
++..|+|+|++||||||||++||++|+. .|+|.|. . .+ ...++..+...+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~------~----~e-------------i~~va~~~~~~G 450 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN------K----TE-------------LLSLIQDFIGSG 450 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT------C----HH-------------HHTTHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC------c----HH-------------HHHHHHHHHhcC
Confidence 4679999999999999999999999996 7999998 1 01 011233344445
Q ss_pred CEEEEeCCceeechhhHHhccCCeEEEEEe
Q 028227 165 RLVVCAGNGAVQSSANLYEISGTFKTWNII 194 (212)
Q Consensus 165 ~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~ 194 (212)
..||++.- ....+|++++.+.+++|..
T Consensus 451 ~~Vv~~~~---sp~~~R~~l~~g~fv~v~~ 477 (511)
T 1g8f_A 451 SGLIIPDQ---WEDDKDSVVGKQNVYLLDT 477 (511)
T ss_dssp CEEEESSC---CCGGGGGGSCCTTEEEEES
T ss_pred CeEEEecC---CHHHHHHHhcCCCEEEEec
Confidence 55554321 1136788887666777763
No 92
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.37 E-value=8.6e-07 Score=79.75 Aligned_cols=83 Identities=23% Similarity=0.230 Sum_probs=58.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--H------------HHHhCC----CchhhhhhhhchHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--V------------FEAAGG----ESAAKAFRESDEKGYQQA 152 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~------------~~~~G~----~si~ei~~~~Ge~~fr~~ 152 (212)
|++..|+|+||+||||||++..||+.++..+++.|.. + ++..|. .++.++-+......|.+.
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~ 80 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDL 80 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHH
Confidence 3567899999999999999999999999999999986 2 122220 111122233445677777
Q ss_pred HHHHHHHHhcCCCEEEEeCCc
Q 028227 153 ETEVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 153 E~~vL~~L~~~~~~VVa~GgG 173 (212)
-...++++...+..+|-+||.
T Consensus 81 a~~~i~~i~~~gk~pIlVGGT 101 (322)
T 3exa_A 81 ATPLITEIHERGRLPFLVGGT 101 (322)
T ss_dssp HHHHHHHHHHTTCEEEEESCC
T ss_pred HHHHHHHHHhCCCcEEEEcCc
Confidence 777888888777777777763
No 93
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.33 E-value=8.3e-07 Score=74.73 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=28.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeeh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~ 124 (212)
-++..|+|.|++||||||+++.|++.++ +.++..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 3578999999999999999999999986 566543
No 94
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.25 E-value=6.7e-07 Score=84.40 Aligned_cols=78 Identities=23% Similarity=0.175 Sum_probs=58.1
Q ss_pred cccCCCceeecccccCCCccccceecc--CCcc-------------hHHHHHHHH------HhcccCCcEEEEEccCCCC
Q 028227 47 IISRKPRITTRSIADDTTSNTVTKVAA--EDPS-------------FAVKKKAAD------ISTELKGTSVFLVGMNNAI 105 (212)
Q Consensus 47 ~~~~~~~~~t~~~~~~~~~~~~~~~~~--~d~~-------------~~lk~~~~~------~~~~l~~~~I~LvG~~GsG 105 (212)
...++++.++++|.+|.+..||..... +|.. ..++++..+ +...+++..++|+|+||||
T Consensus 41 ~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtG 120 (543)
T 3m6a_A 41 PSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVG 120 (543)
T ss_dssp SSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSS
T ss_pred CCCCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCC
Confidence 446788999999999988788877652 2221 234444433 2445578899999999999
Q ss_pred HHHHHHHHHHHhCCcEeeh
Q 028227 106 KTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 106 KTTvak~LA~~lg~~~~d~ 124 (212)
|||+++.||..++.++...
T Consensus 121 KTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 121 KTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp HHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEE
Confidence 9999999999998887643
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.19 E-value=1.7e-06 Score=70.75 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHHHHHHhcc-cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHH
Q 028227 80 VKKKAADISTE-LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (212)
Q Consensus 80 lk~~~~~~~~~-l~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l 127 (212)
+.+.++.+... -++..|.|+|++||||||+++.|+..+. ..++..|..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 33334444332 3578999999999999999999998875 566777664
No 96
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=1.7e-06 Score=71.05 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+|..|+|+||+||||||+++.|++.++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 478899999999999999999998874
No 97
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.14 E-value=2.2e-06 Score=68.70 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+++..++|+||+||||||+.+.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 568899999999999999999999875
No 98
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.11 E-value=4.6e-06 Score=74.84 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=55.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH--------------HHHhC----CCchhhhhhhhchHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--------------FEAAG----GESAAKAFRESDEKGYQQAET 154 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~--------------~~~~G----~~si~ei~~~~Ge~~fr~~E~ 154 (212)
+..|+|+||+||||||++..||+.++..+++.|... ++..| -.+..+.-+......|.+.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~ 89 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDAL 89 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHH
Confidence 567899999999999999999999999999999852 11111 011112222334567777667
Q ss_pred HHHHHHhcCCCEEEEeCC
Q 028227 155 EVLKQLSSMGRLVVCAGN 172 (212)
Q Consensus 155 ~vL~~L~~~~~~VVa~Gg 172 (212)
+.++++...+...|-+||
T Consensus 90 ~~i~~i~~~g~~pilVGG 107 (316)
T 3foz_A 90 AEMADITAAGRIPLLVGG 107 (316)
T ss_dssp HHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHhCCCcEEEEcC
Confidence 778888777776666665
No 99
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=7.2e-06 Score=75.74 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||.+|+++|..++++|+..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 4688999999999999999999999999997654
No 100
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.6e-06 Score=77.33 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||++|+++|..++++|+..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4678999999999999999999999999998554
No 101
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.06 E-value=4.6e-06 Score=77.13 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHHH------------hCC----CchhhhhhhhchHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGG----ESAAKAFRESDEKGYQQAET 154 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~~------------~G~----~si~ei~~~~Ge~~fr~~E~ 154 (212)
+..|+|+||+||||||++..||+.++..+++.|.. +..+ .|. .+..++-+......|.+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 35789999999999999999999999999999983 2211 110 01112222344577888778
Q ss_pred HHHHHHhcCCCEEEEeCCc
Q 028227 155 EVLKQLSSMGRLVVCAGNG 173 (212)
Q Consensus 155 ~vL~~L~~~~~~VVa~GgG 173 (212)
.+++++...+..+|-+||.
T Consensus 82 ~~i~~i~~~g~~pilVGGT 100 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGT 100 (409)
T ss_dssp HHHHHHHTTTCEEEEECSC
T ss_pred HHHHHHHhcCCCEEEECCh
Confidence 8888888777777767763
No 102
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.06 E-value=3.2e-06 Score=71.50 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEee
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD 123 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d 123 (212)
++..|+|.|++||||||+++.|++.+ ++.++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 46789999999999999999999998 677774
No 103
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.03 E-value=4.3e-06 Score=69.97 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=29.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..|+|+|+|||||||+++.+|..++.+++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 567999999999999999999999998877554
No 104
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=7.3e-06 Score=76.21 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||++|+++|..+|++|+..+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 4689999999999999999999999999987543
No 105
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.3e-05 Score=75.26 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||.+|+++|..++++|+..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 4789999999999999999999999999997654
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.98 E-value=4.5e-06 Score=67.56 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=34.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~l~~ 129 (212)
++..|.|+|++||||||+++.|+..++ +.+++.|.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 467899999999999999999999999 99999998654
No 107
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.1e-05 Score=74.97 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||.+|+++|..++++|+..+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4789999999999999999999999999987543
No 108
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.94 E-value=5.8e-06 Score=71.64 Aligned_cols=33 Identities=6% Similarity=-0.114 Sum_probs=29.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..++|+||||||||++++.+|+.+|++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 468899999999999999999999998887544
No 109
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=1.1e-05 Score=75.24 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||.+|+++|..++++|+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 3688999999999999999999999999997553
No 110
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.94 E-value=2e-05 Score=62.97 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+|..|.|+|++||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999998764
No 111
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.92 E-value=1.8e-05 Score=68.95 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..|+|+|+||||||++++.+|+.++.+|+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 568999999999999999999999998887543
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.88 E-value=3.1e-05 Score=61.28 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccc---CCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhHHHHHH
Q 028227 79 AVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLVFEA 131 (212)
Q Consensus 79 ~lk~~~~~~~~~l---~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~l~~~~ 131 (212)
...+.+.++...+ ++..++|+|++|+||||+++.++..+ | +.|++.++++...
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3444555543332 37899999999999999999999876 4 4677888776544
No 113
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.88 E-value=9.9e-06 Score=75.51 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=37.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH--HHH-HHhCCCchhhhhhh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVF-EAAGGESAAKAFRE 143 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~--l~~-~~~G~~si~ei~~~ 143 (212)
+.+.+|+|+||||||||++++.||+.++++|++.|. +.. .+.| .+..+++..
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG-~d~e~~lr~ 102 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-KEVDSIIRD 102 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC-CCTHHHHHH
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee-ccHHHHHHH
Confidence 456789999999999999999999999999987764 333 2344 344444433
No 114
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.88 E-value=0.00022 Score=59.52 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=25.3
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
.+++.-|+|.|++||||||+++.|++.+.
T Consensus 3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 3 AMTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999884
No 115
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.88 E-value=3.4e-05 Score=66.72 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
.+..|+|+|+||||||++++.+|..++.+|+.. .++.....|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 91 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence 468899999999999999999999999888654 455555555
No 116
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.87 E-value=3.8e-06 Score=73.31 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=30.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~ 129 (212)
+..|.|.|++||||||+++.|++.+| +.++|+|+++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 46799999999999999999999888 79999999873
No 117
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.87 E-value=1.2e-05 Score=66.65 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.+..|+|+|+||+|||++++.+|+.++.+++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 357899999999999999999999999888743
No 118
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.85 E-value=2.8e-05 Score=66.05 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++.-|+|.|++||||||+++.|++.+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999988
No 119
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.84 E-value=1e-05 Score=64.99 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+..+.|+||+||||||+.+.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999997653
No 120
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.84 E-value=1.1e-05 Score=71.27 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~ 126 (212)
.+..|+|+|+||||||++|+.||+.++.+|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 46789999999999999999999999999987654
No 121
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.83 E-value=2.9e-05 Score=65.44 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.+..++|+|+||+|||++++.+|+.++.+++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 468899999999999999999999999888753
No 122
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.79 E-value=1.7e-05 Score=67.43 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=29.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+..|+|+|+||||||++++.+|+.++.+|+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 67999999999999999999999999888643
No 123
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.79 E-value=0.0002 Score=61.10 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=25.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+.+++.-|+|.|++||||||+++.|++.++
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999998874
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.76 E-value=5.3e-05 Score=58.21 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+..++|+|++|+|||++++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987
No 125
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.75 E-value=3.7e-05 Score=70.49 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=31.9
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehh
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD 125 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D 125 (212)
+...+..|+|+||||||||++|+.+|+.++ ++|+..+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 444568999999999999999999999999 7887655
No 126
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.74 E-value=2.1e-05 Score=66.40 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.+.+++|+|+||+|||++++.+|+.++.+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999887643
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.74 E-value=4e-05 Score=59.16 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+++..+.+.. -.+..++|+|++|+|||++++.+++.+
T Consensus 30 ~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 30 EIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44443443333 236789999999999999999999987
No 128
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.73 E-value=2e-05 Score=69.73 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.+.+|+|+|+||+|||++|+.||+.++.+|+..|
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 3568999999999999999999999998887654
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.71 E-value=2.1e-05 Score=66.32 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
....++|+|+||+|||++++.+|+.++++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 357899999999999999999999999988754
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.69 E-value=4.6e-05 Score=61.35 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~ 128 (212)
.+..++|+|++|+|||++++.+++.++ +.+++.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 578999999999999999999998764 3566766654
No 131
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.68 E-value=3.1e-05 Score=64.85 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=31.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc----------EeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~----------~~d~D~l~ 128 (212)
++..|.|+|++||||||+++.|+..+|.. +++.|.++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY 70 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence 36789999999999999999999988866 67887643
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.68 E-value=4.2e-05 Score=59.16 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=29.9
Q ss_pred HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (212)
Q Consensus 80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~ 122 (212)
+++.++.+.. .+.+|+|+|++|+|||++|+.+++.. +.+|+
T Consensus 13 ~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 13 YRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp HHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 4444444332 36789999999999999999999875 44554
No 133
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.66 E-value=2.6e-05 Score=65.23 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=29.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..|+|+|+||+|||++++.+|+.++.+|+..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 467999999999999999999999998877543
No 134
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.65 E-value=8.7e-05 Score=65.11 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-CCcEee
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD 123 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d 123 (212)
+..|+|+|+||||||++++.+|+.+ +.+|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 4789999999999999999999998 777753
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.64 E-value=9.5e-05 Score=69.24 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=29.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
++.|+|+|+||+|||++++.+|..++.+|+..+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 467999999999999999999999999987654
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.64 E-value=2.9e-05 Score=65.98 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+.+|+|+|+||+|||++++.+|+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999988
No 137
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.61 E-value=4e-05 Score=68.17 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..|+|+|+||||||++++.+|+.++.+|+..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 467999999999999999999999999887543
No 138
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.61 E-value=3.1e-05 Score=61.83 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..|+|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999999999876
No 139
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=0.00013 Score=58.52 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=30.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFEA 131 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l~~~~ 131 (212)
..|+|+|++|+|||++++.++..+ +. .+++...+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 799999999999999999999877 33 446777766544
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=5.2e-05 Score=65.27 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+..++|+|+|||||||+++.||..++..++..
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 45599999999999999999999998766543
No 141
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.57 E-value=5.5e-05 Score=63.00 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..++|+|++||||||+++.+|..++..++..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 345999999999999999999999887766543
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.57 E-value=5.5e-05 Score=67.57 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+..|+|+|+||+|||++++.+|+.++.+|+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 57999999999999999999999999988754
No 143
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.57 E-value=5.4e-05 Score=67.17 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.+..|+|+|+||+|||++++.+|+.++++|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 367899999999999999999999999888744
No 144
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.56 E-value=0.00014 Score=57.77 Aligned_cols=38 Identities=18% Similarity=-0.022 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~ 131 (212)
+|..+.|+|++||||||+++.+. .+...++.|.+....
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~g~~ 45 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCRGLM 45 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHHHHh
Confidence 47889999999999999999875 467778888766443
No 145
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.55 E-value=0.0001 Score=64.21 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCC--cEe
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRY--YYF 122 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~--~~~ 122 (212)
+...+..++|+|+||+|||++++.+|+.++. +|+
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~ 101 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT 101 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc
Confidence 4444679999999999999999999999985 444
No 146
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.54 E-value=0.00017 Score=71.66 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.++.|+|+||||||||++++.+|..+|++|+..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 3678999999999999999999999999988654
No 147
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=2.4e-05 Score=60.57 Aligned_cols=42 Identities=10% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
.+++.++.+.. .+..|+|+|++|+|||++|+.+++..+ +|+.
T Consensus 15 ~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~ 56 (143)
T 3co5_A 15 EMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-PWVS 56 (143)
T ss_dssp HHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred HHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence 45555555443 357899999999999999999998776 5543
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.52 E-value=6.3e-05 Score=64.97 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=29.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
...|+|+|++|+|||++++.+|+.++.+|+..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 468999999999999999999999999887554
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.51 E-value=0.0001 Score=68.08 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=36.8
Q ss_pred chHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 77 ~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
...|++.++. +.+ .+++|+|+||+||||+++.||+.++.+|+..+
T Consensus 38 ~~~L~~~i~~--~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 38 GKPLPRAIEA--GHL--HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp TSHHHHHHHH--TCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHc--CCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 3566666665 443 68999999999999999999999999887654
No 150
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.50 E-value=0.00012 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
...++|+|++|+|||++++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999876
No 151
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=9.6e-05 Score=68.85 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
...++|+|+||+|||++++.+|+.+|++++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 478999999999999999999999999988653
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.49 E-value=7e-05 Score=65.32 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l 127 (212)
++..|.|+|++||||||+++.|+..++ +.++++|..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 467899999999999999999999877 667777764
No 153
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.47 E-value=0.00018 Score=62.59 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----------CCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----------g~~~~d~D 125 (212)
.+..++|+|++|+|||++++.+++.+ ++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 35689999999999999999999987 87776544
No 154
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.46 E-value=0.00071 Score=56.04 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=24.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh--CCcEe
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL--RYYYF 122 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l--g~~~~ 122 (212)
+=|.|-|+.||||||+++.|++.| |+.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 347788999999999999999988 55554
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=0.0001 Score=62.53 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..|+|+|++||||||+++.|+..++..++..+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 345999999999999999999999887776543
No 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.42 E-value=0.00023 Score=57.69 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~l~ 128 (212)
++..|.|+|++||||||+++.|+..+ +.. +++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 46789999999999999999999875 543 45667654
No 157
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.41 E-value=0.0002 Score=61.78 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=30.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFE 130 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~l~~~ 130 (212)
+..++|+|++|+||||+++.++..+ +.+ +++.+++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 5789999999999999999999987 554 5566665443
No 158
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.41 E-value=0.00026 Score=64.90 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEe--ehhHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF--DSDSLVFEA 131 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~--d~D~l~~~~ 131 (212)
.+..|+|+|+||||||++++.+|..+ +.+|+ +..+++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 35789999999999999999999998 77765 444554433
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.40 E-value=0.00011 Score=64.41 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=26.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
..++|+|+||+||||+++.+|..+++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 67999999999999999999999987653
No 160
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.40 E-value=0.0002 Score=66.10 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehhHH
Q 028227 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDSL 127 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D~l 127 (212)
..+++..+-+.. ..+.+++|+|+||+|||++++.||+.+ +.+++..|.-
T Consensus 187 ~~i~~l~~~l~r-~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 187 KEIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp HHHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 444443333333 456799999999999999999999997 7778776643
No 161
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=8.4e-05 Score=58.49 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l 127 (212)
++..++|+|++|+||||+++.++..+ | ..|++..++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 68899999999999999999999877 6 556665543
No 162
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.33 E-value=0.00021 Score=71.09 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=34.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G 133 (212)
++.|+|+||||||||.+|+++|..++.+|+.. .+++..+.|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence 56799999999999999999999999999855 455554444
No 163
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.32 E-value=0.00013 Score=62.98 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---------CCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---------RYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---------g~~~~d~D 125 (212)
.+.+++|+|++|+|||++++.+++.+ ++.++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 46789999999999999999999988 77665433
No 164
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.31 E-value=9.4e-05 Score=63.95 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
+..++|+|+||+|||++++.+|+.++.+++.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 5799999999999999999999999987753
No 165
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.30 E-value=0.00018 Score=59.81 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=26.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEe
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF 122 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~ 122 (212)
++..|+|.|++||||||+++.|++.+ ++.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~ 32 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 32 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCeee
Confidence 36789999999999999999999999 55443
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.29 E-value=0.00014 Score=62.09 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=27.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~ 122 (212)
+..|+|+|++|+|||++++.+++.++.+++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999999999999999998875
No 167
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.29 E-value=0.00029 Score=68.36 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=30.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehhH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS 126 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D~ 126 (212)
..+.+++|+|+||||||++++.||+.+ ++.++..|.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 456789999999999999999999997 888887776
No 168
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.26 E-value=0.00037 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+|++|+|||++++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999999999999999999998854
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.25 E-value=0.00044 Score=59.93 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=25.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh----CCcEeeh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL----RYYYFDS 124 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l----g~~~~d~ 124 (212)
.++|+|++|+||||+++.+++.+ ++.++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 89999999999999999999988 5555543
No 170
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.25 E-value=7.1e-05 Score=60.12 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
.|+|+|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999985
No 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.24 E-value=0.0002 Score=57.98 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcE
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYY 121 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~ 121 (212)
.+.|+|++||||||+.+.|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 688999999999999999999987554
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.23 E-value=0.00031 Score=60.40 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh------CCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL------RYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l------g~~~~d~D 125 (212)
.+..++|+|++|+||||+++.+++.+ ++.++..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 36789999999999999999999987 76665443
No 173
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.23 E-value=0.00025 Score=66.71 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..|+|+|+||||||++++.||..++.+|+..+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 456999999999999999999999988876543
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.22 E-value=0.00022 Score=59.43 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=26.2
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+.++++.|+|+||+||||||+.+.|++.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999999998764
No 175
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.22 E-value=0.0039 Score=51.08 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227 96 VFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~l---g~~~~ 122 (212)
|.|-|+.||||||.++.|++.| |++++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 6778999999999999999877 66665
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.20 E-value=0.00023 Score=66.53 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.+..|+|+|+||||||++++.+|..++.+|+..+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 4678999999999999999999999998887543
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.20 E-value=0.00052 Score=60.01 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=32.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC----C--cEeehhHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR----Y--YYFDSDSLVFEAA 132 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg----~--~~~d~D~l~~~~~ 132 (212)
+..++|+|++|+|||++++.+|..+. . .|+...+++.+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 58999999999999999999997554 4 4578887776554
No 178
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.19 E-value=0.00028 Score=59.82 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..++|+|+||||||++++.||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 179
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.19 E-value=0.0002 Score=58.23 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+++.+.|+||+||||||+.+.|+..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999998765
No 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.19 E-value=0.00031 Score=57.10 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999999876
No 181
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.00044 Score=57.83 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+..|+|+|++|+|||++++.+++.++
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 182
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.15 E-value=0.00019 Score=59.14 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=17.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH-HHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLA-DAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA-~~l 117 (212)
+|..|.|+|++||||||+.+.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 47889999999999999999999 765
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.10 E-value=0.00063 Score=58.43 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=27.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
+..+++.|+||+|||++++.+|+.++..++..+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 355677788999999999999999998887654
No 184
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.09 E-value=0.00026 Score=59.96 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
.+..|+|+|++|+||||++..|+++.+ .++..|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 467899999999999999999999866 888888753
No 185
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.09 E-value=0.00042 Score=59.40 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=30.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
..|.|+|++||||||+++.|++.+|++++...+.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~ 36 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI 36 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHH
Confidence 36889999999999999999999999998876543
No 186
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00041 Score=61.77 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++.+++|+|+||+|||++++.+++.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999988
No 187
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.08 E-value=0.00027 Score=69.71 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D 125 (212)
.+..|+|+|+|||||||+++.||..++.+++..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 4678999999999999999999999998877554
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.07 E-value=0.00079 Score=59.96 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~ 128 (212)
..|.|+|++||||||+++.|+..++ ..++..|.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4799999999999999999999875 4567888753
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.04 E-value=0.00035 Score=57.72 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47889999999999999999999866
No 190
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.03 E-value=0.00043 Score=58.86 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
++..++|+||||+||||++..||+.++-..+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 35679999999999999999999998755554
No 191
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.02 E-value=0.00084 Score=61.46 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-----CC--cEeehhHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL-----RY--YYFDSDSLVF 129 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~--~~~d~D~l~~ 129 (212)
+..++|+|++|+||||+++.++..+ +. .+++...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 5789999999999999999999977 54 4556666544
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.02 E-value=0.00035 Score=61.03 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEe-ehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYF-DSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~-d~D~l~ 128 (212)
++..|.|+|++||||||+++.|+..++ ...+ ..|.++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 467899999999999999999998875 3445 888764
No 193
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.01 E-value=0.00065 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++|+|++|+|||++++.+|+.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 59999999999999999999986
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.98 E-value=0.00045 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.6
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHH
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA 114 (212)
--+|..+.|+|++||||||+.+.|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3468899999999999999999998
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00085 Score=58.42 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC
Q 028227 96 VFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg 118 (212)
++|+|++|+||||+++.+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999864
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.92 E-value=0.00059 Score=57.06 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+|..++|+||+||||||+.+.|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 588999999999999999999998764
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.92 E-value=0.00051 Score=55.30 Aligned_cols=28 Identities=21% Similarity=0.007 Sum_probs=24.2
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+.-++..+.|+|++||||||+++.|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3345889999999999999999999874
No 198
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.90 E-value=0.0007 Score=54.21 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.8
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehh
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D 125 (212)
..+|..+.|+|++||||||+++.++..+ .+.|++.+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3467899999999999999999998543 34455544
No 199
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.88 E-value=0.00069 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|+.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999999887
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.87 E-value=0.00084 Score=60.98 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d 123 (212)
++..|.|+|++||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 57899999999999999999999998877765
No 201
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.82 E-value=0.00089 Score=56.84 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=30.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l 127 (212)
+..++|+|++|+|||++.+.+++..++.|++.+..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~ 65 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL 65 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence 37899999999999999999999988888887653
No 202
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.80 E-value=0.0011 Score=56.84 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
..++|+|+||+||||+++.+|+.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4499999999999999999999864
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.80 E-value=0.00083 Score=59.19 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l 127 (212)
++..|.|+|++||||||+++.|+..+. +.++..|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 478899999999999999999998763 456666654
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.00035 Score=68.92 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
.+..++|+|+||||||++++.||..++..|+..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999887654
No 205
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.0016 Score=54.91 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
..++|+|++|+|||++++.+++.+.
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999863
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.77 E-value=0.0013 Score=64.91 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D 125 (212)
.+.+++|+|+||+|||++++.||+.+ +.+++..|
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 45689999999999999999999987 77666443
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.76 E-value=0.0009 Score=64.61 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+++|+|++|+|||++++.||+.++.+++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999999999877643
No 208
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.76 E-value=0.0019 Score=62.28 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+++..+-+.. -.+.+++|+|+||+|||++++.||+.+
T Consensus 193 ~~i~~l~~~l~~-~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 193 KELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp HHHHHHHHHHTS-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 344443333333 357899999999999999999999987
No 209
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.75 E-value=0.0013 Score=57.13 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+++.+..+.. .+.+|+|+|++|+|||++|+.+++..
T Consensus 13 ~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 13 HLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34444555433 36789999999999999999999865
No 210
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.74 E-value=0.0021 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+|++|+|||++++.+|+.+++
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999999875
No 211
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.74 E-value=0.0011 Score=55.48 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=24.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
|+|.-|+|.|++||||||+++.|++.+
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999887
No 212
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.74 E-value=0.0017 Score=54.67 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=31.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC---CcEeehhHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFE 130 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~l~~~ 130 (212)
...|.|+|+|||||+|+++.+.+.+| ++.+..-+.+++
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE 51 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence 46899999999999999999999885 677887776653
No 213
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.00099 Score=54.57 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
|..+.|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4578999999999999999999876
No 214
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.70 E-value=0.0005 Score=59.10 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=23.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
...|+|+|+||+|||++++.+++.++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999999987
No 215
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.70 E-value=0.0011 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+.|+|+||+|+|||||.+.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998765
No 216
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.70 E-value=0.0012 Score=55.48 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+|.-|+|.|++||||||+++.|++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999999999986
No 217
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.69 E-value=0.00083 Score=56.58 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999997543
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.69 E-value=0.0012 Score=52.83 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=29.8
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~ 126 (212)
+..++..++|+|++||||||+++.+|...+ ..|++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344588999999999999999999987444 45666654
No 219
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.68 E-value=0.0011 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 57899999999999999999999876
No 220
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.65 E-value=0.00092 Score=55.83 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47889999999999999999998543
No 221
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.62 E-value=0.0014 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
++..|+|.|++||||||+++.|++.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999997654
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0013 Score=53.31 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=24.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..++..+.|+|++||||||+++.+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446889999999999999999999983
No 223
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0025 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++|+|++|+|||++++.+|+.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999986
No 224
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0032 Score=54.31 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++|+|++|+||||+++.+|..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999965
No 225
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999754
No 226
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.52 E-value=0.0015 Score=55.38 Aligned_cols=25 Identities=48% Similarity=0.557 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999863
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.0017 Score=55.65 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.3
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.-++..+.|+|++||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3357899999999999999999998754
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.51 E-value=0.0017 Score=57.04 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|.|+|++||||||+.+.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 229
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.51 E-value=0.0013 Score=56.39 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998543
No 230
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.51 E-value=0.0013 Score=56.61 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999999753
No 231
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.50 E-value=0.0013 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 232
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.50 E-value=0.0011 Score=62.24 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
.+.+|+|+|+||+|||++++.||..++
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 367999999999999999999999874
No 233
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.49 E-value=0.0013 Score=55.96 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999997543
No 234
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.49 E-value=0.0013 Score=55.79 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999997543
No 235
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.47 E-value=0.0014 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 236
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.47 E-value=0.0014 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999997543
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.47 E-value=0.0014 Score=55.38 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999854
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0019 Score=56.64 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 239
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.46 E-value=0.0017 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999864
No 240
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.004 Score=52.75 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=26.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC--cEeehh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALRY--YYFDSD 125 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg~--~~~d~D 125 (212)
..++|+|++|+|||++.+.+++.++. .|++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 58999999999999999999988753 456654
No 241
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.45 E-value=0.002 Score=54.82 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=24.6
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+.-+|..++|+|+||+||||+++.||..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999998654
No 242
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.45 E-value=0.0026 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCcEEEE--EccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFL--VGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~L--vG~~GsGKTTvak~LA~~l 117 (212)
.+..++| +|++|+|||++++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4568888 9999999999999999876
No 243
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.44 E-value=0.0012 Score=54.54 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+|..|.|.|++||||||+++.|+...|
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccC
Confidence 578899999999999999999998734
No 244
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.43 E-value=0.0015 Score=56.22 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999998543
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.42 E-value=0.0022 Score=55.99 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=24.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
...|+|+||||+|||.++++||..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 567999999999999999999997644
No 246
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.42 E-value=0.0015 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.154 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999854
No 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.41 E-value=0.0016 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999997543
No 248
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0023 Score=51.88 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=28.7
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
+..+|..++|+|+||+||||++..+|... +..|++.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 44468899999999999999998887542 455666553
No 249
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.41 E-value=0.0016 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999997543
No 250
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.40 E-value=0.0025 Score=51.61 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..++++|+||+||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999996666543
No 251
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.38 E-value=0.0015 Score=54.57 Aligned_cols=26 Identities=38% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47889999999999999999997543
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.38 E-value=0.0017 Score=57.52 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..+.|+|++||||||+.+.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999887643
No 253
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.36 E-value=0.0024 Score=61.91 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---CCcE--eehhHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV 128 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~--~d~D~l~ 128 (212)
+++|+|++|+|||++|+.||+.+ +.+| +|+..+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 69999999999999999999987 4444 4554443
No 254
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.35 E-value=0.0018 Score=56.21 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999998543
No 255
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.35 E-value=0.0018 Score=55.50 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999999754
No 256
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.35 E-value=0.0018 Score=55.22 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 47889999999999999999997543
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.35 E-value=0.0026 Score=53.93 Aligned_cols=28 Identities=32% Similarity=0.188 Sum_probs=24.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..++..+.|+|++||||||+++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3446899999999999999999999853
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.33 E-value=0.0019 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999997543
No 259
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0018 Score=58.28 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=29.7
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeeh
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~ 124 (212)
+..++..++|+|+||||||+++..+|...| +.|++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 455677889999999999999999997654 457777
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.30 E-value=0.0025 Score=56.66 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..|.|+|++||||||+.+.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999765
No 261
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.26 E-value=0.0021 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999754
No 262
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.26 E-value=0.0058 Score=49.16 Aligned_cols=26 Identities=27% Similarity=0.115 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+...|+|+|.+|+||||+...|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 263
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.25 E-value=0.0036 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
...+|+|++||||||+.++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3778999999999999999988775
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.24 E-value=0.0031 Score=55.07 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDS 126 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~ 126 (212)
++..|.|+|++|+||||++..||..+ | +.+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 47799999999999999999998644 4 35567775
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.22 E-value=0.0031 Score=55.57 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=27.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~ 126 (212)
+..|.|+|++||||||++..||..+ | +.+++.|.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5689999999999999999999765 3 34556664
No 266
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.21 E-value=0.0074 Score=52.73 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=25.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~ 120 (212)
+..++|+|++|+|||++++.+|+.+.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4569999999999999999999998764
No 267
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.0044 Score=49.73 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+...|+|+|.+|+||||+...|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999875
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.19 E-value=0.0028 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+.|+|++||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999998543
No 269
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.19 E-value=0.0028 Score=57.38 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+||+||||||+.+.||-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4788999999999999999999853
No 270
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.18 E-value=0.005 Score=60.63 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=25.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~~~ 122 (212)
.+++|+|++|+|||++++.||+.+ +.+|+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i 620 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 620 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence 489999999999999999999988 55554
No 271
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.17 E-value=0.0036 Score=52.03 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~ 129 (212)
.+.-|+|+|++|+||||++..|.+ .|+.++.=|.+.-
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i 51 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDDVIDL 51 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEE
Confidence 478899999999999999999988 4888887666543
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0033 Score=56.73 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|.|+|++||||||+.+.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46789999999999999999999765
No 273
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.15 E-value=0.0026 Score=60.34 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+..++|+|++||||||+++.||..++.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 579999999999999999999998754
No 274
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.12 E-value=0.004 Score=54.17 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.6
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 88 STELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
...+.+..+.|+|++|+||||+.+.|+ .+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 344667899999999999999999998 44
No 275
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.11 E-value=0.0035 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999754
No 276
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.09 E-value=0.0034 Score=56.65 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999999853
No 277
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.09 E-value=0.0033 Score=57.32 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 47889999999999999999998543
No 278
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.09 E-value=0.0019 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..|.|+|++||||||+.+.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999765
No 279
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.07 E-value=0.0035 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.6
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.++..+|+|+|++|+||||+.+.|+.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34557899999999999999999975
No 280
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.07 E-value=0.0035 Score=56.58 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4788999999999999999999854
No 281
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.06 E-value=0.0035 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4788999999999999999999854
No 282
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.06 E-value=0.0039 Score=46.59 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+.-+|+|+|.+|+||||+...+..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999998875
No 283
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.03 E-value=0.0032 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999999754
No 284
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.02 E-value=0.0028 Score=52.19 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=23.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCC--cEeeh
Q 028227 96 VFLVGMNNAIKTHLGKFLADALRY--YYFDS 124 (212)
Q Consensus 96 I~LvG~~GsGKTTvak~LA~~lg~--~~~d~ 124 (212)
|+++|.+|||||++|..||.. +. .|+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999977 64 35555
No 285
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.01 E-value=0.0038 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 4788999999999999999999854
No 286
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.01 E-value=0.0039 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4788999999999999999999853
No 287
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.00 E-value=0.0042 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.042 Sum_probs=24.8
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..++..+.|+|++||||||+++.++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999999876
No 288
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.99 E-value=0.004 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
...|+|+|++|+||||+.+.|+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999974
No 289
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.99 E-value=0.0028 Score=56.57 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..+.|+|++||||||+.+.|+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999998754
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.98 E-value=0.0033 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
|..+.|+|++||||||+.+.|+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999754
No 291
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.98 E-value=0.0044 Score=55.68 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|+|+|++||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47789999999999999999998754
No 292
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.97 E-value=0.0081 Score=53.91 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=34.3
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeeh----hHHHHHHhC
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDS----DSLVFEAAG 133 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~----D~l~~~~~G 133 (212)
+..++..++|.|+||+||||++..+|... .+.|+|+ |....+..|
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g 112 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG 112 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcC
Confidence 45578899999999999999999998643 4667887 455444444
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.92 E-value=0.0054 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=21.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..|.|+|++||||||+...|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999999865
No 294
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.91 E-value=0.0024 Score=56.37 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 47899999999999999999997544
No 295
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.90 E-value=0.005 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+|+++|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 296
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.90 E-value=0.0045 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|..+.|+|++||||||+.+.||-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 478999999999999999999984
No 297
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.89 E-value=0.0059 Score=54.52 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=29.9
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
+..++..+.|+|+||+||||++..++... .+.|++++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 55568999999999999999999998543 356777543
No 298
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.89 E-value=0.003 Score=56.77 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4688999999999999999999853
No 299
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.86 E-value=0.0052 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|.|+|++||||||+.+.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46789999999999999999999754
No 300
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.86 E-value=0.0049 Score=55.96 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999999999854
No 301
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.85 E-value=0.0042 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+.+..+.|+|++||||||+.+.|+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 4577899999999999999999964
No 302
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.85 E-value=0.0053 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..|.|+|++||||||+.+.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999864
No 303
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.0026 Score=60.75 Aligned_cols=30 Identities=10% Similarity=0.330 Sum_probs=26.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~ 124 (212)
+|+|+|+||+|||++|+.+|+.++..++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~ 358 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTT 358 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecC
Confidence 899999999999999999999887665543
No 304
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.84 E-value=0.0054 Score=47.80 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..|+|+|.+|+||||+.+.|+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999753
No 305
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.82 E-value=0.0055 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+++..+.|+|++|+||||+.+.|+.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhc
Confidence 34678999999999999999999974
No 306
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0045 Score=57.47 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C-C-cEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R-Y-YYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g-~-~~~d~D 125 (212)
+|..+.|+|++||||||+.|.|+..+ | - .++|.|
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 58899999999999999999998643 5 4 556654
No 307
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.80 E-value=0.0036 Score=57.66 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
..|.|+|++|+||||++..||..+ ...++|+|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 589999999999999999999865 356678774
No 308
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.80 E-value=0.0059 Score=45.85 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+.+.|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 345899999999999999999975
No 309
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.79 E-value=0.006 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.+|.|+|++|+||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.74 E-value=0.0067 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.+|+++|.+|+||||+...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999753
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.73 E-value=0.0069 Score=45.49 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.-+|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 312
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.72 E-value=0.009 Score=63.67 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=42.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC-----cEeehh----HHHHHHhCCCchhhhhhhh---chHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSD----SLVFEAAGGESAAKAFRES---DEKGYQQAE 153 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~-----~~~d~D----~l~~~~~G~~si~ei~~~~---Ge~~fr~~E 153 (212)
.++..+.|+|+||||||++|+.++..-.. .|++.+ +++.+.+| -++.+++.+. +|+.++...
T Consensus 1080 p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G-~d~~~~~~~~~~~~e~~l~~~~ 1153 (1706)
T 3cmw_A 1080 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG-VDIDNLLCSQPDTGEQALEICD 1153 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTT-CCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhC-CCHHHHhhccccchHHHHHHHH
Confidence 36777999999999999999999864432 377764 45555667 5666666441 455554433
No 313
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.71 E-value=0.003 Score=56.71 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.||-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4788999999999999999999853
No 314
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.71 E-value=0.009 Score=49.23 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh--C--CcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL--R--YYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l--g--~~~~d~D 125 (212)
+...++++|.+|+||||++..||..+ | ...+|.|
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45678899999999999999999765 4 3456766
No 315
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.70 E-value=0.0034 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
++..|.|+|++||||||+.+.|+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999998863
No 316
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.70 E-value=0.0078 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.145 Sum_probs=21.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+.|+|++||||||+.+.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998764
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.69 E-value=0.0071 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|+|+|++||||||+.+.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999998765
No 318
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.67 E-value=0.0069 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
-++.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998755
No 319
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.63 E-value=0.0083 Score=53.07 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=27.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D 125 (212)
+...|.|+|.+|+||||+...|+..+ | +.+++.|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34689999999999999999999875 3 3456666
No 320
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.63 E-value=0.0058 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 321
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.0085 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.0
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA 114 (212)
+..+|..++|.|.||+|||+++-.+|
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 56678999999999999999998875
No 322
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.60 E-value=0.0077 Score=52.54 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=30.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----------CCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----------g~~~~d~D~ 126 (212)
+..++..+.|+|+||+|||+++..+|... ++.|++++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44467899999999999999999998753 245777654
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0064 Score=45.66 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.-+|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 324
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.56 E-value=0.0086 Score=52.87 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=27.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~ 126 (212)
+..|.|+|++|+||||++..||..+ | .-++|.|-
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5689999999999999999998755 3 34567664
No 325
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.55 E-value=0.0076 Score=52.61 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D 125 (212)
+..|.++|++|+||||++..||..+ | ..++|.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6689999999999999999999765 3 4566777
No 326
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.55 E-value=0.0072 Score=52.28 Aligned_cols=28 Identities=11% Similarity=-0.085 Sum_probs=24.3
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..++..+.|+|+||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456789999999999999999999864
No 327
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.01 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|++|+||||+...|...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
No 328
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.49 E-value=0.0096 Score=52.69 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 85 ADISTEL-KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 85 ~~~~~~l-~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+.-.. ++..+.|+|+|||||||+.+.|+..+
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3443333 47889999999999999999998654
No 329
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.48 E-value=0.011 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999964
No 330
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.47 E-value=0.0091 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
-+|+|+|.+|+||||+.+.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5899999999999999999863
No 331
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.45 E-value=0.0056 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+..+.|+|++||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999998754
No 332
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.44 E-value=0.0094 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA 114 (212)
-+|+|+|.+|+||||+...|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999985
No 333
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.44 E-value=0.0084 Score=56.49 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999853
No 334
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.44 E-value=0.01 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
-+|+|+|.+|+||||+.+.|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999753
No 335
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.43 E-value=0.01 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.-+|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999999754
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.43 E-value=0.0076 Score=46.80 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
++..+|+++|.+|+||||+...|+..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999854
No 337
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.0097 Score=44.72 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=20.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999974
No 338
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.42 E-value=0.011 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D 125 (212)
++..|.++|++|+||||+++.||..+ + ..++|.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 46789999999999999999998654 3 3445665
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.41 E-value=0.011 Score=47.02 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+|+|+|++|+||||+...|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998643
No 340
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.40 E-value=0.0086 Score=55.42 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=27.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~ 126 (212)
+..|+++|++|+||||++..||..+ |. .+++.|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 6789999999999999999999655 43 3467773
No 341
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.40 E-value=0.0092 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA 114 (212)
-+|+|+|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 479999999999999999884
No 342
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.39 E-value=0.012 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999964
No 343
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.37 E-value=0.032 Score=51.15 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
++..|+|+|++||||||+.+.|+..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 567899999999999999999998764
No 344
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.36 E-value=0.01 Score=53.52 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=30.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~ 126 (212)
+..++..+.|+|+|||||||++..++..+ | +.|+|.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 55678899999999999999999998653 3 34676644
No 345
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.36 E-value=0.0089 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998654
No 346
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.36 E-value=0.011 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999865
No 347
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.36 E-value=0.0088 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999874
No 348
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.35 E-value=0.011 Score=46.67 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.35 E-value=0.011 Score=44.42 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999974
No 350
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.35 E-value=0.011 Score=44.95 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999974
No 351
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.34 E-value=0.011 Score=52.27 Aligned_cols=28 Identities=18% Similarity=-0.073 Sum_probs=24.2
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..++..+.|+|+||+|||+++..+|..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445788999999999999999999875
No 352
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.33 E-value=0.01 Score=45.04 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999764
No 353
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.31 E-value=0.012 Score=44.12 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.29 E-value=0.012 Score=45.13 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=20.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 355
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.29 E-value=0.011 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 446899999999999999999975
No 356
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.27 E-value=0.012 Score=54.26 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=28.6
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 84 ~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+..+-+--+|..+.|+|++||||||+.+.|+....
T Consensus 148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34443444689999999999999999999998764
No 357
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.27 E-value=0.014 Score=49.30 Aligned_cols=26 Identities=27% Similarity=-0.040 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..++++|+||+||||.+..++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47789999999999999998888665
No 358
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.27 E-value=0.012 Score=52.48 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=28.1
Q ss_pred HHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 85 ~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
..+-+--+|..+.|+|++||||||+.+.|+..+.
T Consensus 63 d~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 63 DGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3443444689999999999999999999998764
No 359
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.26 E-value=0.014 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|+|+|.+|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 360
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.26 E-value=0.0086 Score=56.50 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 47899999999999999999998654
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=19.5
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA 114 (212)
.+|+|+|.+|+||||+...|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999985
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.23 E-value=0.0096 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999999974
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.23 E-value=0.013 Score=44.42 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.+|+|+|.+|+||||+.+.|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999753
No 364
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.21 E-value=0.014 Score=52.54 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.3
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
+..++..++|.|+||+|||+++..+|... .+.|+|++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 55568899999999999999999988653 356777654
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.19 E-value=0.012 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.184 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|.|+|++||||||+...|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999964
No 366
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.19 E-value=0.014 Score=52.08 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
.+..|+|+|++|+||||++..|.++ |+.++.-|...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~ 178 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE 178 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence 4788999999999999999999875 88888655543
No 367
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.18 E-value=0.013 Score=44.67 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.-+|+|+|.+|+||||+...|..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999874
No 368
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.17 E-value=0.014 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
-+|+|+|.+|+||||+...|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999753
No 369
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.17 E-value=0.014 Score=46.40 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHH
Q 028227 86 DISTELKGTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 86 ~~~~~l~~~~I~LvG~~GsGKTTvak~LA 114 (212)
.+.-..+..+|+|+|++|+||||+.+.+.
T Consensus 18 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 18 FLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 33333456789999999999999999986
No 370
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.14 E-value=0.012 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=22.9
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..++..+.|+|++||||||+++.|+-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 334678999999999999999998763
No 371
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.11 E-value=0.014 Score=54.34 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=28.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL 127 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l 127 (212)
+..|+++|++|+||||++..||..+ |. .++++|.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6789999999999999999999755 43 35677753
No 372
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.11 E-value=0.014 Score=44.82 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999753
No 373
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.11 E-value=0.012 Score=54.68 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHH--HHHh----CCcEeehh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFL--ADAL----RYYYFDSD 125 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~L--A~~l----g~~~~d~D 125 (212)
.+|..+.|+|++||||||+++.+ +-.+ |..+++..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35899999999999999999994 3322 45566553
No 374
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.10 E-value=0.015 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999864
No 375
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.10 E-value=0.016 Score=44.58 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.-+|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999999764
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.09 E-value=0.014 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+.+.|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 377
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.09 E-value=0.013 Score=45.02 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 028227 95 SVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|+|+|.+|+||||+...|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999874
No 378
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.08 E-value=0.018 Score=50.20 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=25.4
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+|..++|.|.||+||||++..+|..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6777899999999999999999999864
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.08 E-value=0.015 Score=44.74 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+.+.|..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 380
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.04 E-value=0.016 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+|+|+|.+|+||||+.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999998886543
No 381
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.04 E-value=0.015 Score=45.66 Aligned_cols=28 Identities=18% Similarity=-0.032 Sum_probs=23.0
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+.-+|+|+|.+|+||||+...+...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3445578999999999999999888653
No 382
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.02 E-value=0.014 Score=55.07 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999854
No 383
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.02 E-value=0.016 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 384
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.02 E-value=0.015 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+..+|+|+|.+|+||||+...|..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999975
No 385
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.016 Score=44.12 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999975
No 386
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.00 E-value=0.0091 Score=56.48 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999997644
No 387
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.016 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 388
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.99 E-value=0.019 Score=43.79 Aligned_cols=24 Identities=21% Similarity=-0.016 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999975
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.96 E-value=0.0094 Score=56.01 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++.+|+|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999998655
No 390
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.95 E-value=0.012 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA 114 (212)
+..+|+|+|.+|+||||+...+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999999885
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.95 E-value=0.018 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999998653
No 392
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.89 E-value=0.013 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999854
No 393
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.89 E-value=0.011 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 47899999999999999999997543
No 394
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.02 Score=44.93 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+|+|+|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999753
No 395
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.86 E-value=0.019 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 396
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.83 E-value=0.018 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+++|.+|+||||+...+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999864
No 397
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.82 E-value=0.02 Score=50.44 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..|.|+|++|+||||+...|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 398
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.02 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
-+|+|+|.+|+||||+...|....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 589999999999999999998654
No 399
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.82 E-value=0.017 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999863
No 400
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.80 E-value=0.013 Score=55.25 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5788999999999999999999753
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.80 E-value=0.013 Score=44.80 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+.-+|+|+|.+|+||||+...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999763
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.80 E-value=0.018 Score=44.12 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999999974
No 403
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.76 E-value=0.02 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.+|+|+|.+|+||||+...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999753
No 404
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.021 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999753
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.76 E-value=0.02 Score=53.28 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=24.7
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+..+|..+.|+|++||||||+++.++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999999998653
No 406
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.75 E-value=0.02 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999999753
No 407
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.022 Score=44.20 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 46899999999999999999975
No 408
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.73 E-value=0.019 Score=44.74 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999864
No 409
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.72 E-value=0.018 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 468999999999999999999853
No 410
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.70 E-value=0.024 Score=51.69 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=24.6
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+|..++|.|+||+||||++..+|..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5567889999999999999999998863
No 411
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.70 E-value=0.0059 Score=53.95 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+++..+.|+|++|+||||+.+.|+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 34688999999999999999999963
No 412
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=94.69 E-value=0.0092 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.++.-|.|-|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34678899999999999999999999864
No 413
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.021 Score=44.75 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 414
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.69 E-value=0.022 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+..|.|+|+||+||||+-..|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998754
No 415
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.68 E-value=0.0093 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999999997543
No 416
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.68 E-value=0.018 Score=55.14 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999854
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.68 E-value=0.022 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999874
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.68 E-value=0.022 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999753
No 419
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.68 E-value=0.028 Score=52.71 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 83 ~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.+..+.+..+|.++.|+|++|+||||++..|+...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 35667788899999999999999999999997643
No 420
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.67 E-value=0.022 Score=44.83 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 421
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.022 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999974
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.019 Score=55.20 Aligned_cols=25 Identities=36% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 5889999999999999999999854
No 423
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.67 E-value=0.019 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999974
No 424
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.66 E-value=0.022 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 468999999999999999988753
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.65 E-value=0.022 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.-+|+|+|.+|+||||+...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 426
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.64 E-value=0.021 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 427
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.63 E-value=0.016 Score=55.53 Aligned_cols=25 Identities=40% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+|..+.|+|++||||||+.+.|+-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999999753
No 428
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.62 E-value=0.023 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 429
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.61 E-value=0.023 Score=44.36 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 430
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.57 E-value=0.028 Score=46.14 Aligned_cols=26 Identities=15% Similarity=-0.102 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++..++++|++|+||||.+-.+|..+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999998888765
No 431
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.55 E-value=0.026 Score=46.58 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
...++++|+||||||+++..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999887544
No 432
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.54 E-value=0.028 Score=53.38 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=23.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+....++|+|+||+||||+.+.++..+
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998643
No 433
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.53 E-value=0.028 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
...++|+|++|+|||++++.||+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999863
No 434
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.53 E-value=0.019 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCcE--EEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTS--VFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~--I~LvG~~GsGKTTvak~LA~ 115 (212)
+|.. +.|+|++||||||+.+.|+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 3667 99999999999999999974
No 435
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.51 E-value=0.013 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+|..+.|+|++||||||+.+.|+..+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999997644
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.50 E-value=0.025 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 437
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.49 E-value=0.024 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+.+.|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999863
No 438
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.46 E-value=0.024 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA 114 (212)
..+|+|+|.+|+||||+...+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999985
No 439
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.44 E-value=0.026 Score=46.79 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999964
No 440
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.42 E-value=0.018 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+.|+|++||||||+.+.|+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999975
No 441
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.42 E-value=0.027 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 457999999999999999998875
No 442
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.42 E-value=0.024 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA 114 (212)
...+|+|+|.+|+||||+...|.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999999885
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.40 E-value=0.028 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.40 E-value=0.027 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+|+||||+...|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999863
No 445
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.027 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+.+.|..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999875
No 446
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.39 E-value=0.026 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 028227 95 SVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 95 ~I~LvG~~GsGKTTvak~LA~~l 117 (212)
.++|.|++|+|||++...+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998776
No 447
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.36 E-value=0.025 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=26.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~ 126 (212)
+..|.|+|.+|+||||++..||..+ |. .++|.|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 4589999999999999999999655 43 4467663
No 448
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.028 Score=44.67 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 449
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.029 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=20.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
.+|+|+|.+|+||||+...|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999854
No 450
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.31 E-value=0.029 Score=51.77 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D 125 (212)
++..|.++|++|+||||++..||..+ | ..++|.|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 46789999999999999999999765 3 3455666
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.4
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA 114 (212)
.+|+|+|.+|+||||+.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999984
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.30 E-value=0.016 Score=44.59 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=10.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998864
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.025 Score=54.25 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..+.|+|++||||||+.+.|+-.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Confidence 567999999999999999999854
No 454
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.29 E-value=0.027 Score=44.58 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=20.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA 114 (212)
..+|+|+|.+|+||||+.+.|.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 455
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.28 E-value=0.029 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999975
No 456
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.25 E-value=0.027 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA 114 (212)
..+|+|+|.+|+||||+...|.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999999999985
No 457
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.24 E-value=0.028 Score=44.63 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=20.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 458
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.23 E-value=0.032 Score=47.66 Aligned_cols=33 Identities=21% Similarity=-0.095 Sum_probs=26.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~ 126 (212)
.+|++.|++|+||||++-.+|..+ |+. ++|.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 479999999999999988888654 554 558873
No 459
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.23 E-value=0.029 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 460
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.21 E-value=0.034 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.067 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
...|.|+||+|+||||+++.++.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 56899999999999999999863
No 461
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.21 E-value=0.036 Score=50.44 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=24.8
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..++..++|.|+||+|||+++..+|..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6667899999999999999999998863
No 462
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.18 E-value=0.023 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA 114 (212)
+..+|+++|.+|+||||+...|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999884
No 463
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.17 E-value=0.024 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998654
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.17 E-value=0.032 Score=44.33 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 5899999999999999999964
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.10 E-value=0.035 Score=44.72 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+..+|+|+|.+|+||||+...|..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3457999999999999999999975
No 466
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.10 E-value=0.026 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
-+|.|+|++|+||||+.+.|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999863
No 467
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.10 E-value=0.034 Score=51.18 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=27.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh----CC--cEeehhH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDS 126 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~l----g~--~~~d~D~ 126 (212)
+..|+++|++|+||||++-.||..+ |. -++|+|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4688999999999999999999655 43 3567773
No 468
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.08 E-value=0.034 Score=44.01 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.06 E-value=0.032 Score=44.76 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999999963
No 470
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.05 E-value=0.045 Score=42.61 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
...+|+|+.|+||||+-.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999987655
No 471
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.04 E-value=0.033 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
...|+|+|.+|+||||+...|..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999854
No 472
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.03 E-value=0.032 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
...|.|+|+.|.||||+|+.+++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999996
No 473
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.00 E-value=0.027 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..++|+|+.||||||+.+.|+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46789999999999999999854
No 474
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.99 E-value=0.033 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+...|..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999998853
No 475
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.96 E-value=0.035 Score=49.43 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~ 128 (212)
.+.-|+|.|++|+||||+|-.|.+ .|+.++.=|.+.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~ 181 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE 181 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence 577899999999999999999866 688887666543
No 476
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.94 E-value=0.057 Score=50.06 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=28.5
Q ss_pred HHHHH-hcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 83 KAADI-STELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 83 ~~~~~-~~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
++.++ .+--+|.++.|+|++||||||+++.||...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34443 455579999999999999999999998765
No 477
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.93 E-value=0.036 Score=43.60 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+|+||||+.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999887754
No 478
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.92 E-value=0.038 Score=47.00 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+..+|+|+|.+||||||+...|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999964
No 479
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.88 E-value=0.042 Score=48.72 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=22.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
....+++|+|++|+||||+.+.++..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998754
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.85 E-value=0.034 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.088 Sum_probs=21.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 028227 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
..+.|+|++||||||+.+.|+-.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999998765
No 481
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.82 E-value=0.05 Score=46.30 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=27.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehh
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD 125 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D 125 (212)
+.+.|.++|..|+||||++-.||..+ |. -.+|+|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35678888999999999999988755 44 457887
No 482
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.043 Score=44.19 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=20.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+|+||||+...|..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.72 E-value=0.037 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+|..+.|+|++||||||+.+.|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578899999999999999999984
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.71 E-value=0.041 Score=59.59 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=30.6
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~ 126 (212)
+.-++++|+|+||||||||++|..++... .+.|++.+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 35568999999999999999999997653 245888773
No 485
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.66 E-value=0.055 Score=48.39 Aligned_cols=28 Identities=21% Similarity=0.005 Sum_probs=25.4
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
+..++..++|.|.||+||||++..+|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6777899999999999999999999865
No 486
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.60 E-value=0.1 Score=43.28 Aligned_cols=30 Identities=20% Similarity=0.038 Sum_probs=25.1
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
.+++..++|+|++|+|||.++..++..++.
T Consensus 105 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~ 134 (237)
T 2fz4_A 105 WLVDKRGCIVLPTGSGKTHVAMAAINELST 134 (237)
T ss_dssp HTTTSEEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred HHhCCCEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 344567999999999999999999988754
No 487
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=93.58 E-value=0.018 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+.-|.|-|+-||||||+++.|++.+.
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788889999999999999998875
No 488
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.58 E-value=0.033 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.197 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+|+|.+||||||+...|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999964
No 489
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=93.56 E-value=0.023 Score=51.87 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=22.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~lg 118 (212)
+++.-|.|-|+.||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3466788899999999999999998875
No 490
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.55 E-value=0.044 Score=46.35 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.+||||||+...|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4789999999999999999964
No 491
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.52 E-value=0.072 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+..+|+|+|.+|+||||+...|..
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999964
No 492
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.40 E-value=0.035 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 028227 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 92 ~~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
+...|.|+|.||+||||+...|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 445799999999999999999964
No 493
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.39 E-value=0.05 Score=51.75 Aligned_cols=27 Identities=26% Similarity=0.085 Sum_probs=22.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 91 l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+.+..++|.|+||+||||+...+...+
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 456889999999999999888776544
No 494
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.39 E-value=0.047 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 028227 94 TSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 94 ~~I~LvG~~GsGKTTvak~LA~ 115 (212)
.+|+|+|.|||||||+-..|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 5799999999999999999974
No 495
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.37 E-value=0.079 Score=44.47 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~ 115 (212)
..+|+++|.+|+||||+...|..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999864
No 496
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.31 E-value=0.048 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+||||||++|.+.-.
T Consensus 33 ~~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Confidence 578999999999999999998533
No 497
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.31 E-value=0.02 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=5.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~ 116 (212)
..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988653
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.29 E-value=0.055 Score=44.08 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA~~lg~ 119 (212)
+...+|+|++|+||||+-.+|.-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 346789999999999999999876654
No 499
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.29 E-value=0.062 Score=49.35 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=25.4
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (212)
Q Consensus 89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l 117 (212)
+..++..++|.|.||+|||+++-.+|...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 66678999999999999999999998644
No 500
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.053 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 028227 93 GTSVFLVGMNNAIKTHLGKFLA 114 (212)
Q Consensus 93 ~~~I~LvG~~GsGKTTvak~LA 114 (212)
..+|+|+|.+|+|||||...+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999986
Done!