Query 028228
Match_columns 212
No_of_seqs 251 out of 1331
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 3E-26 6.4E-31 181.4 13.8 99 83-187 34-137 (137)
2 COG0071 IbpA Molecular chapero 99.9 3.8E-26 8.2E-31 182.3 14.1 104 81-186 38-145 (146)
3 PRK11597 heat shock chaperone 99.9 8E-26 1.7E-30 179.8 13.9 103 82-190 31-138 (142)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2.5E-25 5.4E-30 164.3 12.3 92 85-177 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 1.6E-23 3.5E-28 154.6 12.3 91 84-177 1-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 7.6E-23 1.6E-27 150.8 13.1 89 84-177 1-90 (90)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 8.9E-23 1.9E-27 152.4 13.2 97 87-187 1-102 (102)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.4E-22 3E-27 148.4 11.6 82 87-177 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 4.7E-22 1E-26 144.7 11.3 82 87-177 1-83 (83)
10 cd06482 ACD_HspB10 Alpha cryst 99.9 4.1E-22 8.9E-27 146.3 10.9 82 90-176 5-86 (87)
11 cd06498 ACD_alphaB-crystallin_ 99.9 6.3E-22 1.4E-26 144.4 11.4 82 88-178 2-84 (84)
12 cd06479 ACD_HspB7_like Alpha c 99.9 6E-22 1.3E-26 143.6 10.2 79 87-177 2-81 (81)
13 cd06475 ACD_HspB1_like Alpha c 99.9 3.5E-21 7.5E-26 141.0 11.3 82 86-176 3-85 (86)
14 cd06476 ACD_HspB2_like Alpha c 99.9 3.6E-21 7.9E-26 140.1 11.3 81 88-177 2-83 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.9 6.2E-21 1.3E-25 140.0 10.8 83 90-177 4-87 (87)
16 cd06477 ACD_HspB3_Like Alpha c 99.8 3.8E-20 8.3E-25 134.7 11.1 79 89-176 3-82 (83)
17 cd06464 ACD_sHsps-like Alpha-c 99.8 6.9E-20 1.5E-24 131.9 11.9 88 87-177 1-88 (88)
18 cd06526 metazoan_ACD Alpha-cry 99.8 5.1E-20 1.1E-24 133.5 9.6 77 92-177 6-83 (83)
19 KOG3591 Alpha crystallins [Pos 99.8 1.7E-18 3.8E-23 141.9 12.8 102 83-192 62-167 (173)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 7.7E-18 1.7E-22 124.5 10.1 81 88-177 10-91 (91)
21 KOG0710 Molecular chaperone (s 99.7 1E-16 2.2E-21 134.0 6.6 102 78-180 79-182 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 1.3E-13 2.8E-18 95.6 10.4 80 88-177 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 3.2E-11 7E-16 85.5 9.3 71 88-180 1-71 (78)
24 cd06463 p23_like Proteins cont 99.0 4.6E-09 9.9E-14 74.1 9.4 76 88-180 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 4E-09 8.7E-14 86.4 10.0 79 82-181 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 6.9E-08 1.5E-12 69.0 8.4 77 87-180 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 6.2E-06 1.3E-10 57.5 11.7 77 84-177 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.1 4.2E-05 9.2E-10 57.7 10.3 78 84-179 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.0 5.8E-05 1.3E-09 54.3 9.0 77 87-180 1-77 (84)
30 PF08190 PIH1: pre-RNA process 97.9 7.2E-05 1.6E-09 66.3 9.2 66 92-176 260-327 (328)
31 cd06467 p23_NUDC_like p23_like 97.8 0.00023 5.1E-09 50.8 9.1 74 87-180 2-77 (85)
32 cd06468 p23_CacyBP p23_like do 97.8 0.00046 9.9E-09 50.2 10.1 79 85-180 3-85 (92)
33 cd06488 p23_melusin_like p23_l 97.7 0.00063 1.4E-08 49.4 9.8 78 86-180 3-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.6 0.00084 1.8E-08 48.4 9.6 76 86-180 1-77 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.5 0.0014 2.9E-08 48.6 9.9 78 83-180 5-83 (93)
36 cd00237 p23 p23 binds heat sho 97.4 0.0033 7E-08 47.7 10.4 78 84-180 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.6 0.018 3.8E-07 52.2 9.8 81 83-180 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.5 0.012 2.7E-07 48.6 7.2 81 83-180 3-83 (196)
39 cd06492 p23_mNUDC_like p23-lik 96.1 0.053 1.1E-06 39.5 8.4 74 88-180 3-79 (87)
40 cd06490 p23_NCB5OR p23_like do 96.1 0.12 2.6E-06 37.5 10.0 76 86-180 1-80 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.4 0.45 9.7E-06 35.8 11.1 82 83-180 4-87 (102)
42 PF13349 DUF4097: Domain of un 87.1 7.7 0.00017 30.3 9.4 84 82-174 64-147 (166)
43 KOG3158 HSP90 co-chaperone p23 83.6 4.4 9.6E-05 33.4 6.4 80 82-180 6-85 (180)
44 KOG2265 Nuclear distribution p 81.7 11 0.00024 31.1 8.1 78 82-179 17-96 (179)
45 PF14913 DPCD: DPCD protein fa 79.5 18 0.00039 30.3 8.7 82 80-180 83-171 (194)
46 cd06477 ACD_HspB3_Like Alpha c 77.5 5.2 0.00011 28.8 4.5 30 94-124 51-82 (83)
47 cd06471 ACD_LpsHSP_like Group 70.8 7.4 0.00016 27.9 3.9 30 93-123 62-91 (93)
48 cd06482 ACD_HspB10 Alpha cryst 70.2 9 0.00019 27.8 4.2 34 145-180 9-42 (87)
49 PF00011 HSP20: Hsp20/alpha cr 69.3 11 0.00024 27.2 4.7 38 92-130 54-92 (102)
50 cd06526 metazoan_ACD Alpha-cry 69.3 8.4 0.00018 27.1 3.9 31 93-124 50-82 (83)
51 cd06464 ACD_sHsps-like Alpha-c 68.7 9.9 0.00022 26.1 4.2 33 91-124 54-87 (88)
52 PF12992 DUF3876: Domain of un 66.3 23 0.0005 26.3 5.8 40 82-122 24-68 (95)
53 cd06470 ACD_IbpA-B_like Alpha- 66.1 13 0.00028 26.7 4.4 35 144-180 11-45 (90)
54 cd06472 ACD_ScHsp26_like Alpha 65.6 11 0.00024 27.0 3.9 31 92-123 59-90 (92)
55 cd06481 ACD_HspB9_like Alpha c 63.7 11 0.00024 27.1 3.6 32 92-124 53-86 (87)
56 cd06478 ACD_HspB4-5-6 Alpha-cr 61.6 19 0.00041 25.6 4.5 33 144-178 7-39 (83)
57 cd06480 ACD_HspB8_like Alpha-c 61.2 18 0.00039 26.5 4.4 31 93-124 58-90 (91)
58 PF08308 PEGA: PEGA domain; I 61.1 37 0.00079 22.8 5.8 42 84-125 25-67 (71)
59 cd06497 ACD_alphaA-crystallin_ 60.5 19 0.00041 25.8 4.3 33 144-178 10-42 (86)
60 cd06476 ACD_HspB2_like Alpha c 59.9 19 0.0004 25.8 4.2 32 145-178 8-39 (83)
61 PHA02700 ORF017 DNA-binding ph 59.8 46 0.001 25.0 6.3 82 102-211 4-96 (106)
62 cd06498 ACD_alphaB-crystallin_ 59.4 17 0.00037 26.0 3.9 31 94-125 51-83 (84)
63 PRK10743 heat shock protein Ib 57.8 20 0.00043 28.2 4.4 32 146-179 47-78 (137)
64 PF04972 BON: BON domain; Int 57.8 20 0.00044 23.5 3.9 25 102-127 12-36 (64)
65 cd06479 ACD_HspB7_like Alpha c 57.1 22 0.00048 25.4 4.2 33 145-179 9-41 (81)
66 COG5091 SGT1 Suppressor of G2 56.5 10 0.00023 33.8 2.8 82 83-180 176-257 (368)
67 KOG1667 Zn2+-binding protein M 56.4 59 0.0013 28.7 7.3 82 83-180 214-295 (320)
68 COG0071 IbpA Molecular chapero 54.4 39 0.00084 26.5 5.6 36 93-129 100-136 (146)
69 cd06475 ACD_HspB1_like Alpha c 52.2 35 0.00075 24.4 4.6 34 144-179 10-43 (86)
70 cd06469 p23_DYX1C1_like p23_li 50.2 48 0.001 22.4 5.0 34 93-127 36-70 (78)
71 PF00525 Crystallin: Alpha cry 49.5 4 8.7E-05 27.7 -0.7 14 33-46 18-31 (59)
72 PRK05518 rpl6p 50S ribosomal p 46.3 93 0.002 25.7 6.8 45 106-176 13-57 (180)
73 cd00298 ACD_sHsps_p23-like Thi 45.1 47 0.001 21.5 4.2 32 92-124 47-79 (80)
74 PHA03069 DNA-binding protein; 44.4 66 0.0014 24.6 5.1 76 108-211 18-110 (119)
75 PRK11597 heat shock chaperone 44.2 41 0.0009 26.7 4.3 31 146-178 45-75 (142)
76 TIGR03653 arch_L6P archaeal ri 42.7 1.4E+02 0.0031 24.3 7.3 45 106-176 7-51 (170)
77 PF04767 Pox_F17: DNA-binding 40.7 1E+02 0.0022 23.1 5.5 22 106-127 4-25 (98)
78 TIGR03654 L6_bact ribosomal pr 39.9 1.3E+02 0.0027 24.6 6.6 44 106-176 11-54 (175)
79 cd06467 p23_NUDC_like p23_like 38.3 64 0.0014 22.2 4.1 32 145-177 9-40 (85)
80 cd06463 p23_like Proteins cont 38.2 88 0.0019 20.8 4.8 35 92-127 40-75 (84)
81 cd08023 GH16_laminarinase_like 37.4 2.1E+02 0.0045 23.8 7.8 50 103-155 34-91 (235)
82 PF05455 GvpH: GvpH; InterPro 36.5 1.5E+02 0.0032 24.6 6.5 38 92-130 135-172 (177)
83 KOG3591 Alpha crystallins [Pos 35.7 52 0.0011 27.0 3.7 35 95-129 117-152 (173)
84 cd00503 Frataxin Frataxin is a 35.7 53 0.0011 24.6 3.5 31 159-193 28-58 (105)
85 cd02175 GH16_lichenase lichena 35.1 1.1E+02 0.0025 25.2 5.8 47 106-155 31-80 (212)
86 PTZ00027 60S ribosomal protein 35.0 1.7E+02 0.0037 24.3 6.7 47 106-176 13-59 (190)
87 PRK05498 rplF 50S ribosomal pr 34.8 1.5E+02 0.0033 24.2 6.4 44 106-176 12-55 (178)
88 PF01954 DUF104: Protein of un 33.5 39 0.00083 22.9 2.2 15 159-174 3-17 (60)
89 PHA02995 DNA-binding virion co 31.9 1.9E+02 0.004 21.7 5.7 78 105-211 8-93 (101)
90 KOG3260 Calcyclin-binding prot 30.5 1.9E+02 0.0041 24.3 6.1 79 86-180 77-155 (224)
91 PRK11198 LysM domain/BON super 30.1 69 0.0015 25.3 3.5 26 102-128 38-63 (147)
92 PF07873 YabP: YabP family; I 30.0 43 0.00094 22.7 2.0 22 104-126 23-44 (66)
93 cd06494 p23_NUDCD2_like p23-li 29.7 96 0.0021 22.6 4.0 30 145-175 16-45 (93)
94 KOG3413 Mitochondrial matrix p 29.5 26 0.00056 28.2 0.9 23 154-177 67-89 (156)
95 cd02178 GH16_beta_agarase Beta 28.1 2.7E+02 0.0059 23.7 7.1 44 111-155 60-110 (258)
96 PRK00446 cyaY frataxin-like pr 27.9 79 0.0017 23.7 3.3 29 161-193 29-57 (105)
97 CHL00140 rpl6 ribosomal protei 27.1 1.9E+02 0.0041 23.7 5.7 44 106-176 12-55 (178)
98 TIGR03421 FeS_CyaY iron donor 26.9 81 0.0018 23.5 3.2 29 161-193 27-55 (102)
99 TIGR02856 spore_yqfC sporulati 25.5 55 0.0012 23.6 2.0 24 101-125 38-61 (85)
100 cd02177 GH16_kappa_carrageenas 25.5 3.2E+02 0.0069 23.9 7.1 44 110-154 45-103 (269)
101 PF13620 CarboxypepD_reg: Carb 23.1 99 0.0022 20.8 2.9 30 92-121 47-77 (82)
102 TIGR03422 mito_frataxin fratax 22.2 1E+02 0.0022 22.8 2.9 26 162-191 30-55 (97)
103 cd02182 GH16_Strep_laminarinas 21.8 3.1E+02 0.0067 23.4 6.3 41 106-154 45-98 (259)
104 cd01759 PLAT_PL PLAT/LH2 domai 21.6 3.7E+02 0.0079 20.4 6.4 47 145-193 45-92 (113)
105 COG4004 Uncharacterized protei 21.5 2.2E+02 0.0047 21.2 4.4 33 86-123 26-58 (96)
106 PF02736 Myosin_N: Myosin N-te 21.3 1.2E+02 0.0025 18.7 2.6 31 92-122 9-39 (42)
107 TIGR02892 spore_yabP sporulati 21.2 77 0.0017 23.0 2.0 22 103-125 21-42 (85)
108 PF01491 Frataxin_Cyay: Fratax 20.9 1.3E+02 0.0027 22.7 3.2 18 159-177 30-47 (109)
109 PRK10568 periplasmic protein; 20.9 1.4E+02 0.0031 24.8 3.9 25 102-127 73-97 (203)
110 PF03983 SHD1: SLA1 homology d 20.6 1E+02 0.0022 21.6 2.4 32 86-117 13-44 (70)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=3e-26 Score=181.41 Aligned_cols=99 Identities=15% Similarity=0.305 Sum_probs=87.1
Q ss_pred CCceeEEE-cCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCe
Q 028228 83 QSSVDWLQ-TDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (212)
Q Consensus 83 ~p~~di~e-~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i 161 (212)
.|++||++ ++++|+|.|+|||++|+||+|++++| .|+|+|+++.+. ++..|++.|+.+|+|+|+|.||++||.++
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~- 109 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVRG- 109 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccCc-
Confidence 38899994 89999999999999999999999998 999999987643 33467788899999999999999999995
Q ss_pred EEEEeCCCEEEEEEeCCC----CCceeecc
Q 028228 162 EAYLSNDVFLEIRIPKNP----STCDISHG 187 (212)
Q Consensus 162 ~A~~~nGgvL~I~lPK~~----~~r~I~I~ 187 (212)
|+|+|| ||+|+|||.. .+++|+|+
T Consensus 110 -A~~~dG-VL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 110 -ANLVNG-LLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred -CEEeCC-EEEEEEeCCCccccCCeEEeeC
Confidence 999999 9999999962 36888874
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-26 Score=182.30 Aligned_cols=104 Identities=30% Similarity=0.473 Sum_probs=94.1
Q ss_pred CCCCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCC
Q 028228 81 TGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (212)
Q Consensus 81 ~~~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~ 160 (212)
...|++||++++++|.|.++||||+++||+|.++++ .|+|+|++..+...+...++..++.+|.|+|+|.||..|+++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 357999999999999999999999999999999999 8999999987555556678888889999999999999999999
Q ss_pred eEEEEeCCCEEEEEEeCCCC----Cceeec
Q 028228 161 TEAYLSNDVFLEIRIPKNPS----TCDISH 186 (212)
Q Consensus 161 i~A~~~nGgvL~I~lPK~~~----~r~I~I 186 (212)
|+|+|+|| ||+|+|||.++ .++|.|
T Consensus 117 ~~A~~~nG-vL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 117 IKAKYKNG-LLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred eeeEeeCc-EEEEEEeccccccccCceeec
Confidence 99999999 99999999876 556655
No 3
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=8e-26 Score=179.80 Aligned_cols=103 Identities=16% Similarity=0.279 Sum_probs=89.7
Q ss_pred CCCceeEEE-cCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCC
Q 028228 82 GQSSVDWLQ-TDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (212)
Q Consensus 82 ~~p~~di~e-~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~ 160 (212)
..|++||+| ++++|+|.++|||++++||+|.+++| .|+|+|+++.+. ++..|++.|+.+|+|.|+|.||.+||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPE--KEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEcccc--CCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 458999998 57899999999999999999999998 899999976432 3446888888999999999999999998
Q ss_pred eEEEEeCCCEEEEEEeCC--C--CCceeeccCCC
Q 028228 161 TEAYLSNDVFLEIRIPKN--P--STCDISHGNGA 190 (212)
Q Consensus 161 i~A~~~nGgvL~I~lPK~--~--~~r~I~I~~~~ 190 (212)
+|+|+|| ||+|+|||. + .+++|+|+...
T Consensus 107 -~A~~~nG-VL~I~lPK~~~~~~~~rkI~I~~~~ 138 (142)
T PRK11597 107 -GATFVNG-LLHIDLIRNEPEAIAPQRIAISERP 138 (142)
T ss_pred -cCEEcCC-EEEEEEeccCccccCCcEEEECCcc
Confidence 6999999 999999996 2 37899998644
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.93 E-value=2.5e-25 Score=164.31 Aligned_cols=92 Identities=41% Similarity=0.764 Sum_probs=84.1
Q ss_pred ceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEE
Q 028228 85 SVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAY 164 (212)
Q Consensus 85 ~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~ 164 (212)
.+||+|++++|.|.++|||++++||+|++++++.|+|+|++..+...++..++..++.+|+|.|+|.||.+||.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 37999999999999999999999999999965489999998765554556788889999999999999999999999999
Q ss_pred EeCCCEEEEEEeC
Q 028228 165 LSNDVFLEIRIPK 177 (212)
Q Consensus 165 ~~nGgvL~I~lPK 177 (212)
|+|| ||+|++||
T Consensus 81 ~~nG-vL~I~lPK 92 (92)
T cd06472 81 LENG-VLTVTVPK 92 (92)
T ss_pred EECC-EEEEEecC
Confidence 9999 99999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=1.6e-23 Score=154.62 Aligned_cols=91 Identities=27% Similarity=0.520 Sum_probs=81.6
Q ss_pred CceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCC--CCCceEEeEEEeeeEEEEEECCCCcccCCe
Q 028228 84 SSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDP--RAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (212)
Q Consensus 84 p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i 161 (212)
+++||+|++++|+|.++|||++++||+|.+.++ .|+|+|+++...++ .+..+++.++.+|.|.|+|.|| +|+.++|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 368999999999999999999999999999998 89999999764332 2336788888899999999999 7999999
Q ss_pred EEEEeCCCEEEEEEeC
Q 028228 162 EAYLSNDVFLEIRIPK 177 (212)
Q Consensus 162 ~A~~~nGgvL~I~lPK 177 (212)
+|+|+|| +|+|++||
T Consensus 79 ~A~~~dG-vL~I~lPK 93 (93)
T cd06471 79 KAKYENG-VLKITLPK 93 (93)
T ss_pred EEEEECC-EEEEEEcC
Confidence 9999999 99999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.90 E-value=7.6e-23 Score=150.77 Aligned_cols=89 Identities=17% Similarity=0.378 Sum_probs=80.1
Q ss_pred CceeEEEcC-ceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeE
Q 028228 84 SSVDWLQTD-QAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (212)
Q Consensus 84 p~~di~e~~-~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~ 162 (212)
|++||++++ ++|+|.++|||++++||+|.++++ .|+|+|+++.... .+..|+..++.+|+|.|+|.||.+||.+ +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 679999975 999999999999999999999998 8999999987755 4446777788899999999999999875 8
Q ss_pred EEEeCCCEEEEEEeC
Q 028228 163 AYLSNDVFLEIRIPK 177 (212)
Q Consensus 163 A~~~nGgvL~I~lPK 177 (212)
|+|+|| +|+|+||+
T Consensus 77 A~~~~G-vL~I~l~~ 90 (90)
T cd06470 77 AELENG-LLTIDLER 90 (90)
T ss_pred eEEeCC-EEEEEEEC
Confidence 999999 99999985
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.90 E-value=8.9e-23 Score=152.45 Aligned_cols=97 Identities=30% Similarity=0.490 Sum_probs=78.1
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~ 166 (212)
||.+++++|.|.++||||+++||+|++.++ .|+|+|++... ..+..+...++.++.|.|+|.||.++|.++|+|.|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~~--~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKEE--EEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEGE--ECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeeee--eeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999998 89999999822 233356667778899999999999999999999999
Q ss_pred CCCEEEEEEeCCCC-----Cceeecc
Q 028228 167 NDVFLEIRIPKNPS-----TCDISHG 187 (212)
Q Consensus 167 nGgvL~I~lPK~~~-----~r~I~I~ 187 (212)
|| +|+|++||... +++|+|+
T Consensus 78 ~G-vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NG-VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TS-EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CC-EEEEEEEccccccCCCCeEEEeC
Confidence 99 99999999865 4677764
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=1.4e-22 Score=148.43 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=72.5
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE-
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL- 165 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~- 165 (212)
+|.+++++|.|.++||||+++||+|++.+| .|+|+|++..+.+ +..|++. +|.|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQD--DHGYISR-----EFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeC--CCCEEEE-----EEEEEEECCCCCChHHeEEEeC
Confidence 799999999999999999999999999998 8999999765432 2244443 499999999999999999999
Q ss_pred eCCCEEEEEEeC
Q 028228 166 SNDVFLEIRIPK 177 (212)
Q Consensus 166 ~nGgvL~I~lPK 177 (212)
+|| ||+|++||
T Consensus 76 ~dG-vL~I~~PK 86 (86)
T cd06497 76 ADG-MLTFSGPK 86 (86)
T ss_pred CCC-EEEEEecC
Confidence 799 99999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=4.7e-22 Score=144.67 Aligned_cols=82 Identities=23% Similarity=0.375 Sum_probs=71.3
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE-
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL- 165 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~- 165 (212)
+|.+++++|.|.+|||||+|+||+|++.++ .|+|+|++..+.++ ..|++. .|.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~--~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDE--HGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCC--CCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 478899999999999999999999999998 89999997654322 244443 499999999999999999999
Q ss_pred eCCCEEEEEEeC
Q 028228 166 SNDVFLEIRIPK 177 (212)
Q Consensus 166 ~nGgvL~I~lPK 177 (212)
+|| ||+|++||
T Consensus 73 ~dG-vL~I~~PK 83 (83)
T cd06478 73 ADG-VLTISGPR 83 (83)
T ss_pred CCC-EEEEEecC
Confidence 599 99999998
No 10
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.88 E-value=4.1e-22 Score=146.27 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=72.3
Q ss_pred EcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCC
Q 028228 90 QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDV 169 (212)
Q Consensus 90 e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGg 169 (212)
.+++.|+|.+||||++|+||+|++.+| .|+|+|+++.+.+.++ ..++.+|+|.|+|.||.+||.++|+|+|+|||
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~ 79 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGS 79 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCC
Confidence 467899999999999999999999998 8999999876543221 23567799999999999999999999999999
Q ss_pred EEEEEEe
Q 028228 170 FLEIRIP 176 (212)
Q Consensus 170 vL~I~lP 176 (212)
+|+|..|
T Consensus 80 ~l~i~~~ 86 (87)
T cd06482 80 VVKIETP 86 (87)
T ss_pred EEEEeeC
Confidence 9999987
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.88 E-value=6.3e-22 Score=144.37 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=71.4
Q ss_pred EEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe-
Q 028228 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS- 166 (212)
Q Consensus 88 i~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~- 166 (212)
+.+++++|.|.++||||+|+||+|++.++ .|+|+|++..+.+ +..|++ ++|.|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~~-----~eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQD--EHGFIS-----REFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeC--CCCEEE-----EEEEEEEECCCCCChHHcEEEeCC
Confidence 56889999999999999999999999998 8999998765433 224443 35999999999999999999996
Q ss_pred CCCEEEEEEeCC
Q 028228 167 NDVFLEIRIPKN 178 (212)
Q Consensus 167 nGgvL~I~lPK~ 178 (212)
|| ||+|++||+
T Consensus 74 dG-vL~I~lPk~ 84 (84)
T cd06498 74 DG-VLTVCGPRK 84 (84)
T ss_pred CC-EEEEEEeCC
Confidence 99 999999995
No 12
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=6e-22 Score=143.59 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=71.2
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE-
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL- 165 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~- 165 (212)
||.|++++|.|.+|||||+|+||+|++.+| .|+|+|+++.+. . ..+|+|+|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~--~--------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASD--G--------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccC--C--------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 689999999999999999999999999998 899999986432 1 1358999999999999999999997
Q ss_pred eCCCEEEEEEeC
Q 028228 166 SNDVFLEIRIPK 177 (212)
Q Consensus 166 ~nGgvL~I~lPK 177 (212)
+|| +|+|++++
T Consensus 71 ~~G-vL~I~~~~ 81 (81)
T cd06479 71 EDG-TLTIKARR 81 (81)
T ss_pred CCC-EEEEEecC
Confidence 899 99999986
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.86 E-value=3.5e-21 Score=141.03 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=72.1
Q ss_pred eeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE
Q 028228 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~ 165 (212)
.||+|++++|.|.++||||+|+||+|++.++ .|+|+|++..+.++ ..+. .++|+|+|.||.+||.++|+|.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~--~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQDE--HGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcCC--CCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 5899999999999999999999999999998 89999998654322 2332 24799999999999999999999
Q ss_pred e-CCCEEEEEEe
Q 028228 166 S-NDVFLEIRIP 176 (212)
Q Consensus 166 ~-nGgvL~I~lP 176 (212)
+ || +|+|++|
T Consensus 75 ~~dG-vL~I~lP 85 (86)
T cd06475 75 SPDG-ILTVEAP 85 (86)
T ss_pred CCCC-eEEEEec
Confidence 7 99 9999998
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=3.6e-21 Score=140.11 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=69.5
Q ss_pred EEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe-
Q 028228 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS- 166 (212)
Q Consensus 88 i~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~- 166 (212)
+..++++|.|.++||||+|+||+|++.+| .|+|+|++..+.+ ...++. ++|.|+|.||.+||+++|+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMD--RHGFVS-----REFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceec--CCCEEE-----EEEEEEEECCCCCChhhEEEEecC
Confidence 44578999999999999999999999999 8999999865432 223333 46999999999999999999996
Q ss_pred CCCEEEEEEeC
Q 028228 167 NDVFLEIRIPK 177 (212)
Q Consensus 167 nGgvL~I~lPK 177 (212)
|| +|+|++||
T Consensus 74 dG-vL~I~~Pr 83 (83)
T cd06476 74 DG-ILCIQAPR 83 (83)
T ss_pred CC-EEEEEecC
Confidence 88 99999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.85 E-value=6.2e-21 Score=139.98 Aligned_cols=83 Identities=22% Similarity=0.436 Sum_probs=71.5
Q ss_pred EcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE-eCC
Q 028228 90 QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL-SND 168 (212)
Q Consensus 90 e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~-~nG 168 (212)
+..+.|.|.++||||+++||+|++.++ .|+|+|++..+.++....|. +.+|+|.|+|.||.+||.++|+|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 467899999999999999999999988 89999998765443333443 2368999999999999999999999 899
Q ss_pred CEEEEEEeC
Q 028228 169 VFLEIRIPK 177 (212)
Q Consensus 169 gvL~I~lPK 177 (212)
||+|++|+
T Consensus 80 -vL~I~~P~ 87 (87)
T cd06481 80 -HLHIRAPR 87 (87)
T ss_pred -eEEEEcCC
Confidence 99999995
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=3.8e-20 Score=134.73 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=68.3
Q ss_pred EEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE-eC
Q 028228 89 LQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL-SN 167 (212)
Q Consensus 89 ~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~-~n 167 (212)
.+++++|.|.++||||+|+||+|++.++ .|+|+|++..+.++ ..+. .++|.|+|.||.+||.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~--~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDE--HGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCC--CCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 3688999999999999999999999999 89999998775432 2332 24799999999999999999998 78
Q ss_pred CCEEEEEEe
Q 028228 168 DVFLEIRIP 176 (212)
Q Consensus 168 GgvL~I~lP 176 (212)
| ||+|+.|
T Consensus 75 G-vL~I~~~ 82 (83)
T cd06477 75 G-ILVVETK 82 (83)
T ss_pred C-EEEEEec
Confidence 8 9999986
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=6.9e-20 Score=131.92 Aligned_cols=88 Identities=39% Similarity=0.636 Sum_probs=79.8
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~ 166 (212)
++.|++++|.|.++|||+++++|+|++.++ .|.|+|++........ .+...++.++.|.|+|.||.++|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 478899999999999999999999999998 8999999987654333 67777888899999999999999999999999
Q ss_pred CCCEEEEEEeC
Q 028228 167 NDVFLEIRIPK 177 (212)
Q Consensus 167 nGgvL~I~lPK 177 (212)
|| +|+|++||
T Consensus 79 ~G-~L~I~~pk 88 (88)
T cd06464 79 NG-VLTITLPK 88 (88)
T ss_pred CC-EEEEEEcC
Confidence 98 99999997
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=5.1e-20 Score=133.54 Aligned_cols=77 Identities=26% Similarity=0.497 Sum_probs=67.5
Q ss_pred CceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeC-CCE
Q 028228 92 DQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN-DVF 170 (212)
Q Consensus 92 ~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~n-Ggv 170 (212)
+++|.|.++||||+++||+|++.++ .|+|+|+++...+ ... +.+++|.|+|.||.+||+++|+|+|+| | +
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~--~~~-----~~~~~f~r~~~LP~~vd~~~i~A~~~~~G-v 76 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEERED--EHG-----YVSREFTRRYQLPEGVDPDSVTSSLSSDG-V 76 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeecc--CCC-----EEEEEEEEEEECCCCCChHHeEEEeCCCc-E
Confidence 3699999999999999999999998 8999999876533 112 234789999999999999999999999 6 9
Q ss_pred EEEEEeC
Q 028228 171 LEIRIPK 177 (212)
Q Consensus 171 L~I~lPK 177 (212)
|+|++||
T Consensus 77 L~I~~Pk 83 (83)
T cd06526 77 LTIEAPK 83 (83)
T ss_pred EEEEecC
Confidence 9999998
No 19
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-18 Score=141.90 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=87.6
Q ss_pred CCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeE
Q 028228 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~ 162 (212)
....++..++++|.|.+|+.+|+|++|+|++.|+ +|.|+|++.+..+++ .+.. ++|.|+|.||++||++.|+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~--G~v~-----R~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEH--GYVS-----RSFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCC--CeEE-----EEEEEEecCCCCCChhheE
Confidence 4568899999999999999999999999999998 999999998875433 3333 3699999999999999999
Q ss_pred EEEeCCCEEEEEEeCCCC----CceeeccCCCCC
Q 028228 163 AYLSNDVFLEIRIPKNPS----TCDISHGNGAAT 192 (212)
Q Consensus 163 A~~~nGgvL~I~lPK~~~----~r~I~I~~~~~~ 192 (212)
+.++..|+|+|++||.+. .|.|+|+..+..
T Consensus 134 S~LS~dGvLtI~ap~~~~~~~~er~ipI~~~~~~ 167 (173)
T KOG3591|consen 134 STLSSDGVLTIEAPKPPPKQDNERSIPIEQVGPS 167 (173)
T ss_pred EeeCCCceEEEEccCCCCcCccceEEeEeecCcc
Confidence 999977799999999873 688888865443
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=7.7e-18 Score=124.53 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=70.4
Q ss_pred EEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe-
Q 028228 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS- 166 (212)
Q Consensus 88 i~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~- 166 (212)
+.+++++|.|.+|+.||++|||+|++.++ .|+|+|+++.+.++. .+.. ++|.|+|.||.+||.+.|+|.|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e~--g~~~-----r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKEG--GIVS-----KNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCCC--CEEE-----EEEEEEEECCCCCCchhEEEEeCC
Confidence 44688999999999999999999999998 899999988764332 3332 57999999999999999999999
Q ss_pred CCCEEEEEEeC
Q 028228 167 NDVFLEIRIPK 177 (212)
Q Consensus 167 nGgvL~I~lPK 177 (212)
|| +|+|.+|.
T Consensus 82 dG-vL~IeaP~ 91 (91)
T cd06480 82 EG-LLIIEAPQ 91 (91)
T ss_pred CC-eEEEEcCC
Confidence 77 99999984
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-16 Score=134.00 Aligned_cols=102 Identities=30% Similarity=0.499 Sum_probs=92.3
Q ss_pred cccCCCCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCC--CCCceEEeEEEeeeEEEEEECCCC
Q 028228 78 LQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDP--RAKDWRSGHWWEHGFVRRLELPED 155 (212)
Q Consensus 78 ~~~~~~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~F~R~~~LP~~ 155 (212)
..+...++.+|.+..+.|.+.++|||+++++|+|.++++++|+|+|++..+.++ ....|+..++.+|.|.|++.||++
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence 345567888999999999999999999999999999988789999999887654 456788889999999999999999
Q ss_pred cccCCeEEEEeCCCEEEEEEeCCCC
Q 028228 156 ADWRKTEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 156 vd~~~i~A~~~nGgvL~I~lPK~~~ 180 (212)
++.+.|+|.|+|| ||+|++||...
T Consensus 159 v~~d~ikA~~~nG-VL~VvvpK~~~ 182 (196)
T KOG0710|consen 159 VDVDEIKAEMENG-VLTVVVPKLEP 182 (196)
T ss_pred ccHHHHHHHhhCC-eEEEEEecccc
Confidence 9999999999999 99999999876
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.53 E-value=1.3e-13 Score=95.58 Aligned_cols=80 Identities=43% Similarity=0.696 Sum_probs=69.9
Q ss_pred EEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeC
Q 028228 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167 (212)
Q Consensus 88 i~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~n 167 (212)
++++++.|.|++++||+.+++|.|.+.++ .|.|+|++..... .....+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 46788999999999999999999999998 8999998765432 22233689999999999999999999999
Q ss_pred CCEEEEEEeC
Q 028228 168 DVFLEIRIPK 177 (212)
Q Consensus 168 GgvL~I~lPK 177 (212)
| +|+|++||
T Consensus 72 ~-~l~i~l~K 80 (80)
T cd00298 72 G-VLEITLPK 80 (80)
T ss_pred C-EEEEEEcC
Confidence 8 99999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.28 E-value=3.2e-11 Score=85.51 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.4
Q ss_pred EEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeC
Q 028228 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167 (212)
Q Consensus 88 i~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~n 167 (212)
++++++.+.|.+++||+++++|+|.++++ .|.|+|. .|.+.+.||..||+++++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 46789999999999999999999999988 8999871 37788999999999999999999
Q ss_pred CCEEEEEEeCCCC
Q 028228 168 DVFLEIRIPKNPS 180 (212)
Q Consensus 168 GgvL~I~lPK~~~ 180 (212)
| .|.|+|+|.++
T Consensus 60 ~-~l~i~L~K~~~ 71 (78)
T cd06469 60 G-VLVFTLVKKEP 71 (78)
T ss_pred C-EEEEEEEeCCC
Confidence 9 99999999765
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.99 E-value=4.6e-09 Score=74.14 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=66.4
Q ss_pred EEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeC
Q 028228 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167 (212)
Q Consensus 88 i~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~n 167 (212)
++++++.+.|.+.+||..++++.|.+.++ .|+|++.... + +.|...+.|+..|+++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~~----~-----------~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGG----G-----------KEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCCC----C-----------CceEEeeEccCccchhhcEEEEeC
Confidence 35788999999999999999999999988 8999987431 1 347778899999999999999999
Q ss_pred CCEEEEEEeCCCC
Q 028228 168 DVFLEIRIPKNPS 180 (212)
Q Consensus 168 GgvL~I~lPK~~~ 180 (212)
| .|.|+|+|+.+
T Consensus 65 ~-~l~i~L~K~~~ 76 (84)
T cd06463 65 R-KIEITLKKKEP 76 (84)
T ss_pred C-EEEEEEEECCC
Confidence 9 99999999775
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.98 E-value=4e-09 Score=86.37 Aligned_cols=79 Identities=29% Similarity=0.469 Sum_probs=63.2
Q ss_pred CCCceeEEEcCc-eEEEEEecCCCCcCc-EEEEEeCC-eEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCccc
Q 028228 82 GQSSVDWLQTDQ-AYVLKAELPGVGKNQ-VQVSVENG-KIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADW 158 (212)
Q Consensus 82 ~~p~~di~e~~~-~y~v~~dlPG~~~ed-I~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~ 158 (212)
..+.+++.+.++ +++|.|||||+++++ |+|.+..+ ..|+|+.. +.+.+++.||.. +.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~-~~ 149 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP-DP 149 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-cc
Confidence 457789999887 799999999999888 99999944 14555432 125677999976 68
Q ss_pred CCeEEEEeCCCEEEEEEeCCCCC
Q 028228 159 RKTEAYLSNDVFLEIRIPKNPST 181 (212)
Q Consensus 159 ~~i~A~~~nGgvL~I~lPK~~~~ 181 (212)
+.++|.|.|| ||+|+|-+.+++
T Consensus 150 e~~~~t~nNg-ILEIri~~~~~~ 171 (177)
T PF05455_consen 150 EITSATFNNG-ILEIRIRRTEES 171 (177)
T ss_pred ceeeEEEeCc-eEEEEEeecCCC
Confidence 8999999999 999999988764
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.74 E-value=6.9e-08 Score=69.04 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=66.8
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~ 166 (212)
|++++++.+.|.+.+||+.++++.|.+.++ .|.|++... .+ +.|...+.|+..|+++..++.+.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~----~~-----------~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP----GG-----------SEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC----CC-----------CeEEEecccccccCchhcEEEEe
Confidence 578999999999999999999999999988 799987642 01 24777789999999999999999
Q ss_pred CCCEEEEEEeCCCC
Q 028228 167 NDVFLEIRIPKNPS 180 (212)
Q Consensus 167 nGgvL~I~lPK~~~ 180 (212)
+| .|.|+|.|...
T Consensus 65 ~~-~vei~L~K~~~ 77 (84)
T cd06466 65 PT-KVEITLKKAEP 77 (84)
T ss_pred Ce-EEEEEEEcCCC
Confidence 99 99999999764
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.45 E-value=6.2e-06 Score=57.51 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=63.6
Q ss_pred CceeEEEcCceEEEEEecCCC--CcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCe
Q 028228 84 SSVDWLQTDQAYVLKAELPGV--GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (212)
Q Consensus 84 p~~di~e~~~~y~v~~dlPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i 161 (212)
|.++|+++++...|.+.+++. ++++|.|.+.+. .|.|+...... . .|.-.+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~---~------------~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDG---K------------EYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTS---C------------EEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCC---c------------eEEEEEEEeeeEcchhc
Confidence 568999999999999999665 599999999998 79998653322 1 36666889999999999
Q ss_pred EEEEeCCCEEEEEEeC
Q 028228 162 EAYLSNDVFLEIRIPK 177 (212)
Q Consensus 162 ~A~~~nGgvL~I~lPK 177 (212)
+..+.++ .|.|+|.|
T Consensus 65 ~~~~~~~-~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDN-KIEITLKK 79 (79)
T ss_dssp EEEEETT-EEEEEEEB
T ss_pred EEEEECC-EEEEEEEC
Confidence 9999999 99999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.11 E-value=4.2e-05 Score=57.66 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=66.0
Q ss_pred CceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEE
Q 028228 84 SSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (212)
Q Consensus 84 p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A 163 (212)
|+++++++.+...|.+.+||+ +++.|.+... .|.|++.... . . ..|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~-~l~v~~~~~~--~-~-----------~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPT-SLSFKAKGGG--G-G-----------KKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECC-EEEEEEEcCC--C-C-----------eeEEEEeEhhhhccccccEE
Confidence 578999999999999999998 8899999988 7999985321 1 1 12555678999999999999
Q ss_pred EEeCCCEEEEEEeCCC
Q 028228 164 YLSNDVFLEIRIPKNP 179 (212)
Q Consensus 164 ~~~nGgvL~I~lPK~~ 179 (212)
++.++ .|.|+|.|..
T Consensus 64 ~v~~~-kveI~L~K~~ 78 (108)
T cd06465 64 KVTGR-QIEFVLRKKE 78 (108)
T ss_pred EecCC-eEEEEEEECC
Confidence 99998 9999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.01 E-value=5.8e-05 Score=54.26 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=63.9
Q ss_pred eEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEe
Q 028228 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (212)
Q Consensus 87 di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~ 166 (212)
|++++++...|.+.++|+.++++.|.+.++ .|.+++.... .. .|.-.+.|...|++++.+....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~~---~~------------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLPS---GN------------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECCC---CC------------cEEEeeecCceecchhcEEEEe
Confidence 578899999999999999999999999998 7999986421 11 2455578999999998888888
Q ss_pred CCCEEEEEEeCCCC
Q 028228 167 NDVFLEIRIPKNPS 180 (212)
Q Consensus 167 nGgvL~I~lPK~~~ 180 (212)
.+ -+.|.|.|.+.
T Consensus 65 ~~-kiei~L~K~~~ 77 (84)
T cd06489 65 ST-KIEIKLKKTEA 77 (84)
T ss_pred Cc-EEEEEEEcCCC
Confidence 88 99999999753
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.89 E-value=7.2e-05 Score=66.29 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=57.1
Q ss_pred CceEEEEEecCCC-CcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCC-C
Q 028228 92 DQAYVLKAELPGV-GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSND-V 169 (212)
Q Consensus 92 ~~~y~v~~dlPG~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nG-g 169 (212)
.+.++|+++|||+ +..+|+|.|.+. .|.|+.... .|.-.+.||..||.+..+|.|..- +
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 5789999999999 889999999998 788887532 256669999999999999999754 5
Q ss_pred EEEEEEe
Q 028228 170 FLEIRIP 176 (212)
Q Consensus 170 vL~I~lP 176 (212)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.81 E-value=0.00023 Score=50.81 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=60.2
Q ss_pred eEEEcCceEEEEEecC-CCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE
Q 028228 87 DWLQTDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (212)
Q Consensus 87 di~e~~~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~ 165 (212)
+++++++...|.+.+| |+.++||.|.+.++ .|.|+... + . ..-.-.|...|+++....++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~------~--~----------~~l~~~L~~~I~~~~s~w~~ 62 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG------G--E----------PLLDGELYAKVKVDESTWTL 62 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECC------C--C----------ceEcCcccCceeEcCCEEEE
Confidence 5789999999999997 78999999999998 79998642 0 0 11113578899999988899
Q ss_pred eC-CCEEEEEEeCCCC
Q 028228 166 SN-DVFLEIRIPKNPS 180 (212)
Q Consensus 166 ~n-GgvL~I~lPK~~~ 180 (212)
.+ . .|.|+|+|.++
T Consensus 63 ~~~~-~v~i~L~K~~~ 77 (85)
T cd06467 63 EDGK-LLEITLEKRNE 77 (85)
T ss_pred eCCC-EEEEEEEECCC
Confidence 99 6 99999999875
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.75 E-value=0.00046 Score=50.21 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=63.7
Q ss_pred ceeEEEcCceEEEEEecCCCCc---CcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEE-CCCCcccCC
Q 028228 85 SVDWLQTDQAYVLKAELPGVGK---NQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLE-LPEDADWRK 160 (212)
Q Consensus 85 ~~di~e~~~~y~v~~dlPG~~~---edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~-LP~~vd~~~ 160 (212)
.++++++++...|.+.+|+..+ +++.|.+..+ .|.|++.... .. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~~---~~------------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDLN---GK------------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECCC---Cc------------EEEEEehHhhCccCccc
Confidence 4689999999999999999976 9999999988 7999884211 11 2333353 888999999
Q ss_pred eEEEEeCCCEEEEEEeCCCC
Q 028228 161 TEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 161 i~A~~~nGgvL~I~lPK~~~ 180 (212)
.+.....+ -+.|+|.|.++
T Consensus 67 s~~~~~~~-ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTD-RIVITLAKKKE 85 (92)
T ss_pred cEEEEeCC-EEEEEEEeCCC
Confidence 99999888 99999999875
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.68 E-value=0.00063 Score=49.43 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=64.8
Q ss_pred eeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE
Q 028228 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~ 165 (212)
.|++++++...|.+.+.|+.++++.|.++++ .|+|+..... . ..|.-.+.|-..|+++..+...
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~---~------------~~y~~~l~L~~~I~~~~s~~~v 66 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEG---N------------KEFQLDIELWGVIDVEKSSVNM 66 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCC---C------------ceEEEEeeccceEChhHcEEEe
Confidence 6899999999999999999999999999987 7888765321 1 1366667899999999988787
Q ss_pred eCCCEEEEEEeCCCC
Q 028228 166 SNDVFLEIRIPKNPS 180 (212)
Q Consensus 166 ~nGgvL~I~lPK~~~ 180 (212)
..+ .+.|+|.|.+.
T Consensus 67 ~~~-kvei~L~K~~~ 80 (87)
T cd06488 67 LPT-KVEIKLRKAEP 80 (87)
T ss_pred cCc-EEEEEEEeCCC
Confidence 777 99999999864
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.61 E-value=0.00084 Score=48.45 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=59.3
Q ss_pred eeEEEcCceEEEEEecC-CCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEE
Q 028228 86 VDWLQTDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAY 164 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~ 164 (212)
++++++.+...|.+.+| |+.++||+|++..+ .|.|... .. . . + -.-.|...|+++.-+-.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~-~~----~--~----------~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK-DQ----A--P----------L-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC-CC----C--e----------E-EeCcccCcccccCcEEE
Confidence 36789999999999996 99999999999988 6888652 00 0 1 1 12367889999998877
Q ss_pred EeCCCEEEEEEeCCCC
Q 028228 165 LSNDVFLEIRIPKNPS 180 (212)
Q Consensus 165 ~~nGgvL~I~lPK~~~ 180 (212)
+.+|..|.|.|.|+++
T Consensus 62 i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 62 IKENKSLEVSLIKKDE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 7777469999999875
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.53 E-value=0.0014 Score=48.64 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCceeEEEcCceEEEEEecC-CCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCe
Q 028228 83 QSSVDWLQTDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i 161 (212)
.+.++++++.++..|.+.+| |.+++||.|.+..+ .|.|.-.- + .+. .| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g------~--~~l-----~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG------Q--EVL-----KG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC------E--EEE-----cC------cccCccCcccC
Confidence 46789999999999999999 89999999999998 78887420 0 111 12 56788999999
Q ss_pred EEEEeCCCEEEEEEeCCCC
Q 028228 162 EAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 162 ~A~~~nGgvL~I~lPK~~~ 180 (212)
.-.+++|.+|.|.|.|...
T Consensus 65 tWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred EEEEECCcEEEEEEEeCCC
Confidence 9999998568999999753
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.37 E-value=0.0033 Score=47.68 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred CceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEE
Q 028228 84 SSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (212)
Q Consensus 84 p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A 163 (212)
|+++++++.+...|++++|+ .+|++|+++++ .|+++|... ++. .|.-.+.|=..|++++.+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~~---~g~------------~y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLNG---DNV------------KIYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEECC---CCc------------EEEEEEEeecccCcccCeE
Confidence 78999999999999999999 68999999988 799998431 111 1333467778889997666
Q ss_pred EEeCCCEEEEEEeCCCC
Q 028228 164 YLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 164 ~~~nGgvL~I~lPK~~~ 180 (212)
+...- -+.|.|.|++.
T Consensus 64 ~v~~r-~ve~~L~K~~~ 79 (106)
T cd00237 64 KRTDR-SILCCLRKGKE 79 (106)
T ss_pred EeCCc-eEEEEEEeCCC
Confidence 65444 78899999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.58 E-value=0.018 Score=52.19 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeE
Q 028228 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~ 162 (212)
.+..||+++++...|.+-+.|+.++++.|.+.++ .|.|+-..... . .|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~~~~---~------------~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEVPGE---D------------AYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEecCCC---c------------ceeecccccccccccccE
Confidence 4778999999999999999999999999999988 78888653211 1 244457888999999998
Q ss_pred EEEeCCCEEEEEEeCCCC
Q 028228 163 AYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 163 A~~~nGgvL~I~lPK~~~ 180 (212)
.+.... .+.|+|.|...
T Consensus 220 ~~v~~~-Kiei~l~K~~~ 236 (356)
T PLN03088 220 YEVLST-KIEIRLAKAEP 236 (356)
T ss_pred EEEecc-eEEEEEecCCC
Confidence 888888 99999999764
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.48 E-value=0.012 Score=48.58 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=61.1
Q ss_pred CCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeE
Q 028228 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~ 162 (212)
.+.+|++++....+|.+-.+|+.++|+.|.+.++ .|.|.-+-.. .+ .|.-...|-..|.+++.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~~--g~-------------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLPS--GS-------------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecCC--ch-------------hhhhhHHhccccccccee
Confidence 3678999999999999999999999999999987 6766654331 11 244445577778888876
Q ss_pred EEEeCCCEEEEEEeCCCC
Q 028228 163 AYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 163 A~~~nGgvL~I~lPK~~~ 180 (212)
-+.-.- -+.|+|+|.+.
T Consensus 67 ~k~~st-KVEI~L~K~~~ 83 (196)
T KOG1309|consen 67 FKVFST-KVEITLAKAEI 83 (196)
T ss_pred eEeeee-eEEEEeccccc
Confidence 666666 78888888543
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.14 E-value=0.053 Score=39.47 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=56.0
Q ss_pred EEEcCceEEEEEecC-C--CCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEE
Q 028228 88 WLQTDQAYVLKAELP-G--VGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAY 164 (212)
Q Consensus 88 i~e~~~~y~v~~dlP-G--~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~ 164 (212)
+.++.++..|.+.|| | .+++||+|++... .|.|.-+... .+.. | .|...|+++.-.-.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g~~-------~~i~-----G------~L~~~V~~des~Wt 63 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKGQP-------PIID-----G------ELYNEVKVEESSWL 63 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECCCc-------eEEe-----C------cccCcccccccEEE
Confidence 567888899999996 3 8899999999988 7888542110 1111 2 46678999998888
Q ss_pred EeCCCEEEEEEeCCCC
Q 028228 165 LSNDVFLEIRIPKNPS 180 (212)
Q Consensus 165 ~~nGgvL~I~lPK~~~ 180 (212)
+++|..|.|+|-|...
T Consensus 64 led~~~l~i~L~K~~~ 79 (87)
T cd06492 64 IEDGKVVTVNLEKINK 79 (87)
T ss_pred EeCCCEEEEEEEECCC
Confidence 9987689999999754
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.06 E-value=0.12 Score=37.47 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=54.5
Q ss_pred eeEEEcCceEEEEEecCCC--CcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEE
Q 028228 86 VDWLQTDQAYVLKAELPGV--GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A 163 (212)
.|+++++++..|.+-..+. .++++.+....+ .|.|+-... +. .|...+.|-..|+++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~----~~------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG----DK------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC----Cc------------eEEEeeeccccCCCCc-EE
Confidence 3899999999999998864 555555665665 688865422 11 2566678888898775 55
Q ss_pred EEe--CCCEEEEEEeCCCC
Q 028228 164 YLS--NDVFLEIRIPKNPS 180 (212)
Q Consensus 164 ~~~--nGgvL~I~lPK~~~ 180 (212)
++. -| -+.|+|.|.+.
T Consensus 63 ~~~~~~~-KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETG-KIELVLKKKEP 80 (87)
T ss_pred EEcccCc-eEEEEEEcCCC
Confidence 554 66 99999999764
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.42 E-value=0.45 Score=35.80 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCceeEEEcCceEEEEEecC-CC-CcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCC
Q 028228 83 QSSVDWLQTDQAYVLKAELP-GV-GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~ 160 (212)
...+.+.++-++..|.+.|| |. +.+||.|.+... .|.|.-+... ....+.. | .|...|+.+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~~----~~~~~i~-----G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDGG----GEKVLME-----G------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecCC----CCceEEe-----C------cccCcccCcc
Confidence 35678999999999999999 54 689999999988 6877653100 0001211 2 4677899999
Q ss_pred eEEEEeCCCEEEEEEeCCCC
Q 028228 161 TEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 161 i~A~~~nGgvL~I~lPK~~~ 180 (212)
-.-.+++|-.|.|+|-|...
T Consensus 68 s~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred ceEEEeCCCEEEEEEEECCC
Confidence 88999997468999999753
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=87.12 E-value=7.7 Score=30.33 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCe
Q 028228 82 GQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (212)
Q Consensus 82 ~~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i 161 (212)
....+.|...++ ..+.++. ..+.++++.+++ +|.|+.+.....- ...+..... ...-.-.+.||.++..++|
T Consensus 64 ~~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i 135 (166)
T PF13349_consen 64 DNGDVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKI 135 (166)
T ss_pred CceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEE
Confidence 345677777554 4445555 222688999988 8999987222110 012211111 1345567899999888899
Q ss_pred EEEEeCCCEEEEE
Q 028228 162 EAYLSNDVFLEIR 174 (212)
Q Consensus 162 ~A~~~nGgvL~I~ 174 (212)
+....+| -++|.
T Consensus 136 ~i~~~~G-~i~i~ 147 (166)
T PF13349_consen 136 DIKTSSG-DITIE 147 (166)
T ss_pred EEEeccc-cEEEE
Confidence 9888888 76664
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=83.65 E-value=4.4 Score=33.45 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCe
Q 028228 82 GQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (212)
Q Consensus 82 ~~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i 161 (212)
..|.+-+.+..+-+.+++.|+- ..+..|.++.. .|+++|+.... .+ .+...|.|=..||+++.
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~-~l~fs~k~~~d--~~------------~~~~~ief~~eIdpe~s 68 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPS-KLTFSCKSGAD--NH------------KYENEIEFFDEIDPEKS 68 (180)
T ss_pred cCCcchhhhhcCeEEEEEEecc--Cccceeecccc-EEEEEeccCCC--ce------------eeEEeeehhhhcCHhhc
Confidence 4578889999999999999985 45677778877 79999985421 11 24555778889999987
Q ss_pred EEEEeCCCEEEEEEeCCCC
Q 028228 162 EAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 162 ~A~~~nGgvL~I~lPK~~~ 180 (212)
+-+-. + -+...++++.+
T Consensus 69 k~k~~-~-r~if~i~~K~e 85 (180)
T KOG3158|consen 69 KHKRT-S-RSIFCILRKKE 85 (180)
T ss_pred ccccc-c-eEEEEEEEccc
Confidence 65555 4 66666666544
No 44
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=81.72 E-value=11 Score=31.14 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCceeEEEcCceEEEEEecC-CC-CcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccC
Q 028228 82 GQSSVDWLQTDQAYVLKAELP-GV-GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWR 159 (212)
Q Consensus 82 ~~p~~di~e~~~~y~v~~dlP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~ 159 (212)
..+.+.|.+|=.+..|.+-|| |+ +..+|.+.+... .|.|.-+... .+.. | .|...|+.+
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~kg~~-------~ild-----G------~L~~~vk~d 77 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGLKGQP-------PILD-----G------ELSHSVKVD 77 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEecCCCC-------ceec-----C------ccccccccc
Confidence 457788899989999998887 88 889999999977 5766643222 1222 1 355678889
Q ss_pred CeEEEEeCCCEEEEEEeCCC
Q 028228 160 KTEAYLSNDVFLEIRIPKNP 179 (212)
Q Consensus 160 ~i~A~~~nGgvL~I~lPK~~ 179 (212)
...-.+++| .+.|.+-++.
T Consensus 78 es~WtiEd~-k~i~i~l~K~ 96 (179)
T KOG2265|consen 78 ESTWTIEDG-KMIVILLKKS 96 (179)
T ss_pred cceEEecCC-EEEEEEeecc
Confidence 989999999 5555544443
No 45
>PF14913 DPCD: DPCD protein family
Probab=79.46 E-value=18 Score=30.34 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=59.6
Q ss_pred cCCCCceeEEEcCceEEEEEecCCCCcCcEEEEEeCC-eEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCC---
Q 028228 80 STGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENG-KIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPED--- 155 (212)
Q Consensus 80 ~~~~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~--- 155 (212)
+...|.+-=.+|...|+-++-===+.++--+|+++++ +.++|+...+ .|.++|.+|+-
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNK------------------KYyKk~~IPDl~R~ 144 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNK------------------KYYKKFSIPDLDRC 144 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcCc------------------cceeEecCCcHHhh
Confidence 4456766667788888888754446788888888843 3788886422 26677888862
Q ss_pred ---cccCCeEEEEeCCCEEEEEEeCCCC
Q 028228 156 ---ADWRKTEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 156 ---vd~~~i~A~~~nGgvL~I~lPK~~~ 180 (212)
.+.+.++..+.|. .|.|+..|...
T Consensus 145 ~l~l~~~~ls~~h~nN-TLIIsYkKP~~ 171 (194)
T PF14913_consen 145 GLPLEQSALSFAHQNN-TLIISYKKPKE 171 (194)
T ss_pred CCCcchhhceeeeecC-eEEEEecCcHH
Confidence 3677889999999 99999988543
No 46
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=77.49 E-value=5.2 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=27.1
Q ss_pred eEEEEEecC-CCCcCcEEEEE-eCCeEEEEEEE
Q 028228 94 AYVLKAELP-GVGKNQVQVSV-ENGKIVEISGQ 124 (212)
Q Consensus 94 ~y~v~~dlP-G~~~edI~V~v-~~~~~L~I~g~ 124 (212)
.|.=++.|| +++.+.|+=++ .+| +|+|+|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDG-ILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCC-EEEEEec
Confidence 788889999 89999999998 688 9999985
No 47
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=70.78 E-value=7.4 Score=27.88 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCCcCcEEEEEeCCeEEEEEE
Q 028228 93 QAYVLKAELPGVGKNQVQVSVENGKIVEISG 123 (212)
Q Consensus 93 ~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g 123 (212)
..|.-.+.||.+.++.|+-++.|| +|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 467777899999999999999999 999975
No 48
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=70.17 E-value=9 Score=27.83 Aligned_cols=34 Identities=0% Similarity=0.091 Sum_probs=29.4
Q ss_pred eEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCCC
Q 028228 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 145 ~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~~ 180 (212)
.|.-...|| +++.+.|+.++.+| .|+|+.-++..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~-~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDG-KVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEecc
Confidence 477778999 89999999999999 99999987543
No 49
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=69.33 E-value=11 Score=27.16 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=29.5
Q ss_pred CceEEEEEecC-CCCcCcEEEEEeCCeEEEEEEEeecccC
Q 028228 92 DQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRD 130 (212)
Q Consensus 92 ~~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~ 130 (212)
...|.-.+.|| +++.+.|+-.+.+| +|+|+..+.....
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~~ 92 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEEE 92 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSCT
T ss_pred cceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccccc
Confidence 35788899999 78999999999998 9999998877543
No 50
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.27 E-value=8.4 Score=27.14 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=27.6
Q ss_pred ceEEEEEecC-CCCcCcEEEEEeC-CeEEEEEEE
Q 028228 93 QAYVLKAELP-GVGKNQVQVSVEN-GKIVEISGQ 124 (212)
Q Consensus 93 ~~y~v~~dlP-G~~~edI~V~v~~-~~~L~I~g~ 124 (212)
.+|.-.+.|| +++++.|+-++.+ | +|+|+..
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~G-vL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDG-VLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCc-EEEEEec
Confidence 5788899999 7899999999998 7 9999874
No 51
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=68.75 E-value=9.9 Score=26.15 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=28.9
Q ss_pred cCceEEEEEecC-CCCcCcEEEEEeCCeEEEEEEE
Q 028228 91 TDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQ 124 (212)
Q Consensus 91 ~~~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~ 124 (212)
....|.-.+.|| +++.+.++..+.+| .|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 357899999999 78999999999998 9999864
No 52
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=66.33 E-value=23 Score=26.26 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCceeEEEcCceEEEEEecCCC-----CcCcEEEEEeCCeEEEEE
Q 028228 82 GQSSVDWLQTDQAYVLKAELPGV-----GKNQVQVSVENGKIVEIS 122 (212)
Q Consensus 82 ~~p~~di~e~~~~y~v~~dlPG~-----~~edI~V~v~~~~~L~I~ 122 (212)
..|.+.|+++++.|.|.+--+.. +++...|.-++| .+.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 46999999999999999866543 788888888888 56665
No 53
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=66.11 E-value=13 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.6
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCCC
Q 028228 144 HGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 144 g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~~ 180 (212)
..|.-.+.|| +++.+.|+-.+.++ .|+|+..+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~-~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENN-QLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEccc
Confidence 3688889999 79999999999988 99999776544
No 54
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=65.61 E-value=11 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.8
Q ss_pred CceEEEEEecC-CCCcCcEEEEEeCCeEEEEEE
Q 028228 92 DQAYVLKAELP-GVGKNQVQVSVENGKIVEISG 123 (212)
Q Consensus 92 ~~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g 123 (212)
...|.-.+.|| +++++.|+-++.|| +|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 46899999999 68999999999999 999974
No 55
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=63.66 E-value=11 Score=27.10 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.2
Q ss_pred CceEEEEEecC-CCCcCcEEEEE-eCCeEEEEEEE
Q 028228 92 DQAYVLKAELP-GVGKNQVQVSV-ENGKIVEISGQ 124 (212)
Q Consensus 92 ~~~y~v~~dlP-G~~~edI~V~v-~~~~~L~I~g~ 124 (212)
..+|.=.+.|| +++.+.|+-++ .|| +|+|++-
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~P 86 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSG-HLHIRAP 86 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCc-eEEEEcC
Confidence 46789999999 79999999999 788 9999863
No 56
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=61.62 E-value=19 Score=25.59 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCC
Q 028228 144 HGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (212)
Q Consensus 144 g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~ 178 (212)
..|.-.+.|| +++++.|+-.+.+| .|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~-~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGD-FVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 3588889999 89999999999999 999998653
No 57
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=61.18 E-value=18 Score=26.52 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.4
Q ss_pred ceEEEEEecC-CCCcCcEEEEEe-CCeEEEEEEE
Q 028228 93 QAYVLKAELP-GVGKNQVQVSVE-NGKIVEISGQ 124 (212)
Q Consensus 93 ~~y~v~~dlP-G~~~edI~V~v~-~~~~L~I~g~ 124 (212)
.+|.=.+.|| +++.+.|+-.+. +| +|+|++.
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEcC
Confidence 5788889999 899999999999 77 9999873
No 58
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=61.05 E-value=37 Score=22.83 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=32.7
Q ss_pred CceeEE-EcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEe
Q 028228 84 SSVDWL-QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQW 125 (212)
Q Consensus 84 p~~di~-e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~ 125 (212)
.++.+. -..+.|.|++..+|+..-.-.|.+..+....|+.+-
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred CcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 345566 457899999999999998888888866577777654
No 59
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=60.48 E-value=19 Score=25.83 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=28.6
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCC
Q 028228 144 HGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (212)
Q Consensus 144 g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~ 178 (212)
..|.-.+.|| +++++.|+..+.+| +|+|+.-+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~-~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDD-YVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 4588889998 89999999999999 999998653
No 60
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=59.88 E-value=19 Score=25.78 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=28.1
Q ss_pred eEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCC
Q 028228 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (212)
Q Consensus 145 ~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~ 178 (212)
.|.-.+.|| ++.++.|+.++++| .|+|..-+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~-~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDN-LLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 577788998 78999999999999 999998764
No 61
>PHA02700 ORF017 DNA-binding phosphoprotein; Provisional
Probab=59.79 E-value=46 Score=25.02 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=49.6
Q ss_pred CCCCcCcEEEEEe-CCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCCC
Q 028228 102 PGVGKNQVQVSVE-NGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 102 PG~~~edI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~~ 180 (212)
-|+.+.-+-|+++ +|++|++++.+-.+. + .++-+.-+|+ - ||.|.=|+...
T Consensus 4 ~~v~~~PFiint~geGr~LVLKavklCdV-----------------------r-tv~C~~~~aS---C-VLKvekP~sp~ 55 (106)
T PHA02700 4 GGVHKRPFIVNVEGQGRVLVLRYVRMCEV-----------------------P-EAKCEGSRAS---C-VLKVDPPRSPV 55 (106)
T ss_pred CccccCCeEEeecCcceEEEEEEEeecCc-----------------------c-cccCCCCcCc---e-eeecCCCCCCc
Confidence 3677888888888 778898888754431 1 2344444444 3 88888887554
Q ss_pred Ccee---------eccCCCCCC-CCcCCccchhhhhhhhcC
Q 028228 181 TCDI---------SHGNGAATK-NSEAMPTILFQNVVQNHK 211 (212)
Q Consensus 181 ~r~I---------~I~~~~~~~-~~~~~~~~~~~~~~~~~~ 211 (212)
.++= ++.....+. ...=|.|.+||++|.+.|
T Consensus 56 c~rrP~sp~~p~c~mR~~~~sP~~~PFM~T~mL~~lf~~~k 96 (106)
T PHA02700 56 CERRPQLPPSPPCPVRTPPGSPLAAPLMPTQMLQGLFTTAK 96 (106)
T ss_pred cccCCCCCCCCcccccCCCCCCCcccccccHHHHHHHHhhh
Confidence 2221 111111111 233569999999998765
No 62
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=59.39 E-value=17 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=27.0
Q ss_pred eEEEEEecC-CCCcCcEEEEEe-CCeEEEEEEEe
Q 028228 94 AYVLKAELP-GVGKNQVQVSVE-NGKIVEISGQW 125 (212)
Q Consensus 94 ~y~v~~dlP-G~~~edI~V~v~-~~~~L~I~g~~ 125 (212)
+|.=.+.|| +++++.|+-++. +| +|+|+..+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dG-vL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDG-VLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCC-EEEEEEeC
Confidence 488889999 799999999996 88 99998754
No 63
>PRK10743 heat shock protein IbpA; Provisional
Probab=57.79 E-value=20 Score=28.22 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=25.6
Q ss_pred EEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCC
Q 028228 146 FVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (212)
Q Consensus 146 F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~ 179 (212)
|.-...|| +++.+.|+..+++| +|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~-~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDN-LLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECC-EEEEEEEECc
Confidence 44456777 88999999999999 9999986544
No 64
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.77 E-value=20 Score=23.51 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=19.8
Q ss_pred CCCCcCcEEEEEeCCeEEEEEEEeec
Q 028228 102 PGVGKNQVQVSVENGKIVEISGQWKE 127 (212)
Q Consensus 102 PG~~~edI~V~v~~~~~L~I~g~~~~ 127 (212)
++++..+|+|.+.+| .++|+|.-..
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 367777899999999 8999999754
No 65
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=57.10 E-value=22 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCC
Q 028228 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (212)
Q Consensus 145 ~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~ 179 (212)
.|.-.+.|| +++++.|+-+..+| .|+|..-|+.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~-~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNN-QIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEec
Confidence 577789999 89999999999999 9999987654
No 66
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=56.51 E-value=10 Score=33.75 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeE
Q 028228 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~ 162 (212)
...+|+.+|.....|-+.-|-++.++|++-++.| +|.|+-+-+.-. --|.-.+.|-..|+++...
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~~s 240 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLR--------------LWNDITISLYKEVYPDIRS 240 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccc--------------hHHHhhhhhhhhcCcchhh
Confidence 4567888999999999999999999999999988 899987533210 1244456777888888776
Q ss_pred EEEeCCCEEEEEEeCCCC
Q 028228 163 AYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 163 A~~~nGgvL~I~lPK~~~ 180 (212)
-+.-.- ++.|.|-|.+.
T Consensus 241 ~k~fsK-~~e~~l~KV~~ 257 (368)
T COG5091 241 IKSFSK-RVEVHLRKVEM 257 (368)
T ss_pred hhhcch-hheehhhhhhh
Confidence 665556 88888887654
No 67
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=56.39 E-value=59 Score=28.69 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCceeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeE
Q 028228 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (212)
Q Consensus 83 ~p~~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~ 162 (212)
.-..|+..++...+|.+...|.-++--.|..+.- .|.|+=..... . .+|...+.|=.-|+++...
T Consensus 214 ~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~g---n-----------a~fd~d~kLwgvvnve~s~ 278 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFG---N-----------ASFDLDYKLWGVVNVEESS 278 (320)
T ss_pred cchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCC---C-----------ceeeccceeeeeechhhce
Confidence 3456899999999999999999999888888854 67776554311 1 2588888888889999988
Q ss_pred EEEeCCCEEEEEEeCCCC
Q 028228 163 AYLSNDVFLEIRIPKNPS 180 (212)
Q Consensus 163 A~~~nGgvL~I~lPK~~~ 180 (212)
+.+-.- -+.|+|+|.++
T Consensus 279 v~m~~t-kVEIsl~k~ep 295 (320)
T KOG1667|consen 279 VVMGET-KVEISLKKAEP 295 (320)
T ss_pred EEeecc-eEEEEEeccCC
Confidence 888877 99999999887
No 68
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=54.42 E-value=39 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.8
Q ss_pred ceEEEEEecC-CCCcCcEEEEEeCCeEEEEEEEeeccc
Q 028228 93 QAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQR 129 (212)
Q Consensus 93 ~~y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~ 129 (212)
..|.-++.|| +++++.++-++.|| +|+|.-.+....
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~~ 136 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEPE 136 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEeccccc
Confidence 4566677777 56778899999999 999998776643
No 69
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=52.24 E-value=35 Score=24.43 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=29.3
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCC
Q 028228 144 HGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (212)
Q Consensus 144 g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~ 179 (212)
..|.-.+.|| +++++.|+-.+.++ .|+|+.-+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDG-VVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECC-EEEEEEEECc
Confidence 3588889998 89999999999999 9999987643
No 70
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=50.16 E-value=48 Score=22.44 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=28.6
Q ss_pred ceEEEEEecCC-CCcCcEEEEEeCCeEEEEEEEeec
Q 028228 93 QAYVLKAELPG-VGKNQVQVSVENGKIVEISGQWKE 127 (212)
Q Consensus 93 ~~y~v~~dlPG-~~~edI~V~v~~~~~L~I~g~~~~ 127 (212)
+.|.+.++|++ +++++.+.++.++ .|.|+=.+.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeCC
Confidence 56899999996 6999999999998 8999966543
No 71
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=49.53 E-value=4 Score=27.72 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.1
Q ss_pred hccchhhhhccCCC
Q 028228 33 SQGNPAVHKAFGDG 46 (212)
Q Consensus 33 ~~~~~~~d~~F~~~ 46 (212)
..+.|.|||.||++
T Consensus 18 ~~PsRiFDQ~FGEg 31 (59)
T PF00525_consen 18 FFPSRIFDQNFGEG 31 (59)
T ss_dssp S-SCHHHCTTSEES
T ss_pred cCchhhHHHhhccc
Confidence 35779999999975
No 72
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=46.31 E-value=93 Score=25.68 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.0
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEe
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lP 176 (212)
|++++|+++++ .++|+|.+ |...+.|.-+ .++...++| .|.|+..
T Consensus 13 P~~V~v~i~~~-~v~VkGp~------------------G~L~~~~~~~------~v~i~~~~~-~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGL-VVTVKGPK------------------GELTRDFWYP------GVTISVEDG-KVVIETE 57 (180)
T ss_pred CCCCEEEEECC-EEEEECCC------------------eEEEEEecCC------cEEEEEECC-EEEEEEC
Confidence 78899999987 89999974 3344433321 455567888 8877754
No 73
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=45.06 E-value=47 Score=21.48 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=27.4
Q ss_pred CceEEEEEecCC-CCcCcEEEEEeCCeEEEEEEE
Q 028228 92 DQAYVLKAELPG-VGKNQVQVSVENGKIVEISGQ 124 (212)
Q Consensus 92 ~~~y~v~~dlPG-~~~edI~V~v~~~~~L~I~g~ 124 (212)
...|...+.||+ +.++.++..+.+| .|.|.-.
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~-~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENG-VLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECC-EEEEEEc
Confidence 578999999996 5889999999998 8988754
No 74
>PHA03069 DNA-binding protein; Provisional
Probab=44.38 E-value=66 Score=24.64 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=42.5
Q ss_pred cEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCCCCce----
Q 028228 108 QVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPSTCD---- 183 (212)
Q Consensus 108 dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~~~r~---- 183 (212)
-.-|++++|++|++++-+-.... .||-++-+|+ - ||.|.=|+....++
T Consensus 18 PFiint~eGryLVLKavKlCdVr------------------------tv~C~~~~aS---C-VLKvekP~Sp~c~r~P~s 69 (119)
T PHA03069 18 PFILNTDDGRYLVLKAIKLCNVK------------------------TIDCMKKESS---C-VLKVDKPKSPCPISAPDS 69 (119)
T ss_pred ceEEecCCCeEEEEEEEeecCcc------------------------cccCCCCcCc---e-eeecCCCCCCCcccCCCC
Confidence 35577788888988887544311 2344444443 3 88888777544222
Q ss_pred ---eeccC-----CCCCCCCc-----CCccchhhhhhhhcC
Q 028228 184 ---ISHGN-----GAATKNSE-----AMPTILFQNVVQNHK 211 (212)
Q Consensus 184 ---I~I~~-----~~~~~~~~-----~~~~~~~~~~~~~~~ 211 (212)
-.+.. +++.++.+ =|.|.+|+|+|.+.+
T Consensus 70 pp~c~~~~~~~P~~sP~~~~~~P~~~FM~T~~L~~lf~~n~ 110 (119)
T PHA03069 70 APKCIIQQTQQPNQQPNQQRQAPQLRFINTGALSNIFANTT 110 (119)
T ss_pred CcccccccccCCCCCcccccCCchhhhhhhhHHHHHHHhhh
Confidence 11221 12222212 347999999997753
No 75
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=44.23 E-value=41 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=25.0
Q ss_pred EEEEEECCCCcccCCeEEEEeCCCEEEEEEeCC
Q 028228 146 FVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (212)
Q Consensus 146 F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~ 178 (212)
|.-...|| +++.+.|+-.+++| +|+|+.-++
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~-~LtI~ge~~ 75 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGT-RLTVKGTPE 75 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 55557777 78899999999988 999988654
No 76
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=42.68 E-value=1.4e+02 Score=24.29 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=30.9
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEe
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lP 176 (212)
|++++|++.++ .|+|+|.+ |...+.+. |. .++...+++ .|.|..+
T Consensus 7 P~~V~v~i~~~-~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~-~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVKGPK------------------GEVTRELW-YP-----GIEISVEDG-KVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCC-EEEEEeC
Confidence 68899999987 89999974 33444332 22 355567888 8888754
No 77
>PF04767 Pox_F17: DNA-binding 11 kDa phosphoprotein; InterPro: IPR006854 This is a family of poxvirus proteins required for virus morphogenesis. This protein is necessary for proteolytic processing of the major viral structural proteins, P4a and P4b [].; GO: 0003677 DNA binding, 0019082 viral protein processing
Probab=40.74 E-value=1e+02 Score=23.09 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=15.9
Q ss_pred cCcEEEEEeCCeEEEEEEEeec
Q 028228 106 KNQVQVSVENGKIVEISGQWKE 127 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~ 127 (212)
.+-.-|++++|++|++++-+-.
T Consensus 4 ~~PFiint~eGryLVLKavk~C 25 (98)
T PF04767_consen 4 HTPFIINTKEGRYLVLKAVKLC 25 (98)
T ss_pred cCceEEeccCCeEEEEEEEeec
Confidence 3445677778888988887654
No 78
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=39.94 E-value=1.3e+02 Score=24.61 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=30.3
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEe
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lP 176 (212)
|++|+|+++++ .|+|+|.+ |...+.| |. .+....+++ .|.|...
T Consensus 11 P~~V~v~~~~~-~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~-~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGPK------------------GELSRTL--HP-----GVTVKVEDG-QLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEEcCC------------------eEEEEEc--CC-----CeEEEEECC-EEEEEec
Confidence 68899999987 89999973 3344444 43 344556777 7777754
No 79
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=38.28 E-value=64 Score=22.22 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=26.9
Q ss_pred eEEEEEECCCCcccCCeEEEEeCCCEEEEEEeC
Q 028228 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 177 (212)
Q Consensus 145 ~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK 177 (212)
...-.|.+|.++..+.++..+.+. -|.|.+..
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~ 40 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG 40 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcC-EEEEEECC
Confidence 355568899999999999999998 89998863
No 80
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=38.21 E-value=88 Score=20.80 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=29.0
Q ss_pred CceEEEEEecCC-CCcCcEEEEEeCCeEEEEEEEeec
Q 028228 92 DQAYVLKAELPG-VGKNQVQVSVENGKIVEISGQWKE 127 (212)
Q Consensus 92 ~~~y~v~~dlPG-~~~edI~V~v~~~~~L~I~g~~~~ 127 (212)
+..|.+.++|++ +++++...++.++ .|.|.=.+..
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~-~l~i~L~K~~ 75 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDR-KIEITLKKKE 75 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCC-EEEEEEEECC
Confidence 478999999997 5888899999988 7999876654
No 81
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=37.37 E-value=2.1e+02 Score=23.78 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEe--------EEEeeeEEEEEECCCC
Q 028228 103 GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSG--------HWWEHGFVRRLELPED 155 (212)
Q Consensus 103 G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~--------e~~~g~F~R~~~LP~~ 155 (212)
-.+++++. +.+| .|.|++.+..........|.+. ...+|.|+-+++||..
T Consensus 34 ~~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 34666665 4578 7999998664321111123222 2335788888998864
No 82
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=36.47 E-value=1.5e+02 Score=24.59 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=29.7
Q ss_pred CceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccC
Q 028228 92 DQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRD 130 (212)
Q Consensus 92 ~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~ 130 (212)
++.|+=++.||--..+-.+++++|| +|.|.-++.++..
T Consensus 135 ~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 135 GEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred CCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 3445567788866778889999999 9999998877654
No 83
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=52 Score=27.00 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.3
Q ss_pred EEEEEecC-CCCcCcEEEEEeCCeEEEEEEEeeccc
Q 028228 95 YVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQR 129 (212)
Q Consensus 95 y~v~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~ 129 (212)
|.=+.-|| |++++.|.=.+..+++|+|+|.+....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 33345688 999999999999544999999877643
No 84
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=35.68 E-value=53 Score=24.64 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCEEEEEEeCCCCCceeeccCCCCCC
Q 028228 159 RKTEAYLSNDVFLEIRIPKNPSTCDISHGNGAATK 193 (212)
Q Consensus 159 ~~i~A~~~nGgvL~I~lPK~~~~r~I~I~~~~~~~ 193 (212)
..+.+.+.+| ||+|+++. ..+|-|+.-.+.+
T Consensus 28 ~d~D~e~~~g-VLti~f~~---~~~~VINkQ~p~~ 58 (105)
T cd00503 28 ADIDVETQGG-VLTLTFGN---GSTIVINRQEPLR 58 (105)
T ss_pred cCEeeeccCC-EEEEEECC---CCEEEEeCCchhh
Confidence 4566778777 99999983 4466666544433
No 85
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=35.05 E-value=1.1e+02 Score=25.17 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=27.4
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccC--CCCCc-eEEeEEEeeeEEEEEECCCC
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRD--PRAKD-WRSGHWWEHGFVRRLELPED 155 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~--~~~~~-~~~~e~~~g~F~R~~~LP~~ 155 (212)
+++++|+ +| .|.|++.+..... -.... .......+|.|+-++++|..
T Consensus 31 ~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 5665554 77 6889887654211 00111 12233457899999999853
No 86
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=35.01 E-value=1.7e+02 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=31.3
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEe
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lP 176 (212)
|++++|++.++ .|+|+|.+ |+..+.|.=| ...|....++| .|.|+.+
T Consensus 13 P~~V~V~i~~~-~v~VkGp~------------------G~L~~~~~~~----~~~i~i~~~~~-~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSR-KVTVTGKY------------------GELTRSFRHL----PVDIKLSKDGK-YIKVEMW 59 (190)
T ss_pred CCCCEEEEECC-EEEEECCC------------------ceEEEEecCC----CceEEEEeCCC-EEEEEeC
Confidence 78999999987 89999973 3344433211 12455566788 8777754
No 87
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=34.76 E-value=1.5e+02 Score=24.15 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=30.2
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEe
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lP 176 (212)
|++|+|++.++ .|+|+|.+ |...+.| |.. +....+++ .|.|...
T Consensus 12 P~~V~v~~~~~-~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~-~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVKGPK------------------GELSRTL--NPD-----VTVKVEDN-EITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC------------------EEEEEEc--CCC-----eEEEEECC-EEEEEcC
Confidence 68999999987 89999973 3455444 433 34456777 7777654
No 88
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=33.49 E-value=39 Score=22.91 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=11.2
Q ss_pred CCeEEEEeCCCEEEEE
Q 028228 159 RKTEAYLSNDVFLEIR 174 (212)
Q Consensus 159 ~~i~A~~~nGgvL~I~ 174 (212)
..|.|.|+|| ||.--
T Consensus 3 ~~I~aiYe~G-vlkPl 17 (60)
T PF01954_consen 3 KVIEAIYENG-VLKPL 17 (60)
T ss_dssp --EEEEEETT-EEEEC
T ss_pred ceEEEEEECC-EEEEC
Confidence 4689999999 88753
No 89
>PHA02995 DNA-binding virion core protein; Provisional
Probab=31.89 E-value=1.9e+02 Score=21.74 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=43.2
Q ss_pred CcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEeCCCCCcee
Q 028228 105 GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPSTCDI 184 (212)
Q Consensus 105 ~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lPK~~~~r~I 184 (212)
.++-.-|.+++|++|++++.+-.+.. .|+-+.-+|+ - ||.|.=|. ...++=
T Consensus 8 ~~~PFiint~eGryLVLKavKlCdVr------------------------tv~c~~~~aS---C-VLKvekPs-p~c~rr 58 (101)
T PHA02995 8 AHTPFYIDTKEGRYLVLKAVKVCDIR------------------------TVECDGSKAS---C-VLKVEKPS-PTCERR 58 (101)
T ss_pred cCCCeEEeccCCeEEEEEEEeecCcc------------------------ccccCCCcCc---e-eeecCCCC-CccccC
Confidence 34566777778888988887654311 2444444444 3 78777773 221111
Q ss_pred eccC----CCC-C---CCCcCCccchhhhhhhhcC
Q 028228 185 SHGN----GAA-T---KNSEAMPTILFQNVVQNHK 211 (212)
Q Consensus 185 ~I~~----~~~-~---~~~~~~~~~~~~~~~~~~~ 211 (212)
+... .-. + ....=|.|.+||++|.+.+
T Consensus 59 p~sp~pr~~~~~sP~~~~~PFMrTnmLe~lf~~nr 93 (101)
T PHA02995 59 PSSPCERAERSSSPNNNQVPFMRTNMLEDMQANNR 93 (101)
T ss_pred CCCCCCcccccCCCCCCcCCccccHHHHHHHHhhh
Confidence 1111 001 1 1233469999999998754
No 90
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=30.45 E-value=1.9e+02 Score=24.35 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred eeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEE
Q 028228 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~ 165 (212)
+-|-+.++...+.+.|-|+..|+++|.+... .|.|.-..- .+..|... .=.|-..+++++-+-..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~dl-----qGK~y~~~---------vnnLlk~I~vEks~~kv 141 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHDL-----QGKNYRMI---------VNNLLKPISVEKSSKKV 141 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeeec-----CCcceeee---------hhhhccccChhhccccc
Confidence 4455677888899999999999999999987 787765421 12223221 01244578888888888
Q ss_pred eCCCEEEEEEeCCCC
Q 028228 166 SNDVFLEIRIPKNPS 180 (212)
Q Consensus 166 ~nGgvL~I~lPK~~~ 180 (212)
+-. .+.|.+.|.+.
T Consensus 142 Ktd-~v~I~~kkVe~ 155 (224)
T KOG3260|consen 142 KTD-TVLILCKKVEN 155 (224)
T ss_pred ccc-eEEEeehhhhc
Confidence 888 88888866554
No 91
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=30.14 E-value=69 Score=25.29 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=22.4
Q ss_pred CCCCcCcEEEEEeCCeEEEEEEEeecc
Q 028228 102 PGVGKNQVQVSVENGKIVEISGQWKEQ 128 (212)
Q Consensus 102 PG~~~edI~V~v~~~~~L~I~g~~~~~ 128 (212)
.|+...+|+|.+.+| +++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 478888899999999 99999987654
No 92
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=30.02 E-value=43 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=19.0
Q ss_pred CCcCcEEEEEeCCeEEEEEEEee
Q 028228 104 VGKNQVQVSVENGKIVEISGQWK 126 (212)
Q Consensus 104 ~~~edI~V~v~~~~~L~I~g~~~ 126 (212)
|+.+.|.|....| .|.|.|+.=
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECceE
Confidence 5789999999998 899999853
No 93
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=29.67 E-value=96 Score=22.60 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=26.6
Q ss_pred eEEEEEECCCCcccCCeEEEEeCCCEEEEEE
Q 028228 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRI 175 (212)
Q Consensus 145 ~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~l 175 (212)
.-.-+|+||.++..+.+...++.. -|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSR-DISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcC-EEEEEE
Confidence 455678999999999999999999 999988
No 94
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=29.53 E-value=26 Score=28.22 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=17.0
Q ss_pred CCcccCCeEEEEeCCCEEEEEEeC
Q 028228 154 EDADWRKTEAYLSNDVFLEIRIPK 177 (212)
Q Consensus 154 ~~vd~~~i~A~~~nGgvL~I~lPK 177 (212)
+.+..+.--+.|.|| ||+|.|+-
T Consensus 67 e~~~~~~~Dv~y~~G-VLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADG-VLTLKLGS 89 (156)
T ss_pred hhcCccccccccccc-eEEEEecC
Confidence 344445566789999 99999883
No 95
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=28.09 E-value=2.7e+02 Score=23.72 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEEEeecccC-CCCCceEEe------EEEeeeEEEEEECCCC
Q 028228 111 VSVENGKIVEISGQWKEQRD-PRAKDWRSG------HWWEHGFVRRLELPED 155 (212)
Q Consensus 111 V~v~~~~~L~I~g~~~~~~~-~~~~~~~~~------e~~~g~F~R~~~LP~~ 155 (212)
|.+.+| .|.|++.+..... .....|.+. ...+|.|+-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566788 7999987665311 111223332 2346889999999963
No 96
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=27.93 E-value=79 Score=23.75 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=19.6
Q ss_pred eEEEEeCCCEEEEEEeCCCCCceeeccCCCCCC
Q 028228 161 TEAYLSNDVFLEIRIPKNPSTCDISHGNGAATK 193 (212)
Q Consensus 161 i~A~~~nGgvL~I~lPK~~~~r~I~I~~~~~~~ 193 (212)
+.+.+.+| ||+|+++.. .+|-|+.-.+.+
T Consensus 29 ~D~e~~~g-VLti~f~~~---~~~VINkQ~p~~ 57 (105)
T PRK00446 29 IDCERNGG-VLTLTFENG---SKIIINRQEPLH 57 (105)
T ss_pred eeeeccCC-EEEEEECCC---CEEEEeCCCchh
Confidence 66778878 999999863 456666444433
No 97
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=27.09 E-value=1.9e+02 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=29.6
Q ss_pred cCcEEEEEeCCeEEEEEEEeecccCCCCCceEEeEEEeeeEEEEEECCCCcccCCeEEEEeCCCEEEEEEe
Q 028228 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (212)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~F~R~~~LP~~vd~~~i~A~~~nGgvL~I~lP 176 (212)
|+.|+|+++++ .|+|+|.+- +.. ..||. .+....+++ .|.|..+
T Consensus 12 P~~V~v~i~~~-~v~vkGp~G------------------~l~--~~~~~-----~v~i~~~~~-~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQ-IIKVKGPKG------------------TLS--RKIPD-----LITIEIQDN-SLFVSKK 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCCE------------------EEE--EECCC-----CeEEEEeCC-EEEEEcC
Confidence 67889999987 899999743 233 34554 344556777 7777654
No 98
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.91 E-value=81 Score=23.54 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=19.6
Q ss_pred eEEEEeCCCEEEEEEeCCCCCceeeccCCCCCC
Q 028228 161 TEAYLSNDVFLEIRIPKNPSTCDISHGNGAATK 193 (212)
Q Consensus 161 i~A~~~nGgvL~I~lPK~~~~r~I~I~~~~~~~ 193 (212)
+.+.+.+| ||+|+++. .-+|-|+.-.+.+
T Consensus 27 ~D~e~~~g-VLti~f~~---~~~~VINkQ~p~~ 55 (102)
T TIGR03421 27 IDCERAGG-VLTLTFEN---GSQIIINKQEPLH 55 (102)
T ss_pred eeeecCCC-EEEEEECC---CCEEEEeCCchhh
Confidence 66777777 99999985 4456666444333
No 99
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=25.47 E-value=55 Score=23.61 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.3
Q ss_pred cCCCCcCcEEEEEeCCeEEEEEEEe
Q 028228 101 LPGVGKNQVQVSVENGKIVEISGQW 125 (212)
Q Consensus 101 lPG~~~edI~V~v~~~~~L~I~g~~ 125 (212)
+=-|+.+.|.|+...| .|.|+|+.
T Consensus 38 I~~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 38 LVVFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred eEEECCCEEEEEcCce-EEEEEccc
Confidence 3346899999999999 89999984
No 100
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=25.45 E-value=3.2e+02 Score=23.93 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=26.1
Q ss_pred EEEEeCCeEEEEEEEeecccC---------CCCCceEEeE------EEeeeEEEEEECCC
Q 028228 110 QVSVENGKIVEISGQWKEQRD---------PRAKDWRSGH------WWEHGFVRRLELPE 154 (212)
Q Consensus 110 ~V~v~~~~~L~I~g~~~~~~~---------~~~~~~~~~e------~~~g~F~R~~~LP~ 154 (212)
.|.+.+| .|.|++.++.... .....|.+.+ ..||.|+-+++||.
T Consensus 45 Nv~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 4467788 7999998753211 1111233332 34688999999754
No 101
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=23.14 E-value=99 Score=20.84 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCCcCcE-EEEEeCCeEEEE
Q 028228 92 DQAYVLKAELPGVGKNQV-QVSVENGKIVEI 121 (212)
Q Consensus 92 ~~~y~v~~dlPG~~~edI-~V~v~~~~~L~I 121 (212)
.+.|.|.+.-+|+.+... .|.+..+....|
T Consensus 47 ~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 47 PGTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp SEEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred CEeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 378999999999998888 588886544443
No 102
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=22.20 E-value=1e+02 Score=22.84 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=16.9
Q ss_pred EEEEeCCCEEEEEEeCCCCCceeeccCCCC
Q 028228 162 EAYLSNDVFLEIRIPKNPSTCDISHGNGAA 191 (212)
Q Consensus 162 ~A~~~nGgvL~I~lPK~~~~r~I~I~~~~~ 191 (212)
.+.+.+| ||+|+++. .-+|-|+.-.+
T Consensus 30 D~e~~~g-VLti~~~~---~~~~VINkQ~p 55 (97)
T TIGR03422 30 DVEYSSG-VLTLELPS---VGTYVINKQPP 55 (97)
T ss_pred ccccCCC-EEEEEECC---CCEEEEeCCCh
Confidence 5667777 99999954 33555554333
No 103
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=21.76 E-value=3.1e+02 Score=23.38 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred cCcEEEEEe-CCeEEEEEEEeecccCCCCCceEEeEEEe------------eeEEEEEECCC
Q 028228 106 KNQVQVSVE-NGKIVEISGQWKEQRDPRAKDWRSGHWWE------------HGFVRRLELPE 154 (212)
Q Consensus 106 ~edI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~e~~~------------g~F~R~~~LP~ 154 (212)
++++. +. +| .|+|++++.. ...|.+.+... +.|+-+++||.
T Consensus 45 ~~n~~--v~~dG-~L~I~a~~~~-----~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 45 TANVQ--LSGNG-TLQITPLRDG-----SGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred CcCEE--EcCCC-eEEEEEEecC-----CCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 35544 45 77 7999987653 11343333321 25777888875
No 104
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=21.59 E-value=3.7e+02 Score=20.40 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=29.7
Q ss_pred eEEEEEECCCCc-ccCCeEEEEeCCCEEEEEEeCCCCCceeeccCCCCCC
Q 028228 145 GFVRRLELPEDA-DWRKTEAYLSNDVFLEIRIPKNPSTCDISHGNGAATK 193 (212)
Q Consensus 145 ~F~R~~~LP~~v-d~~~i~A~~~nGgvL~I~lPK~~~~r~I~I~~~~~~~ 193 (212)
.|..-|....++ +...|+-.+++. +|....|+.. .++|.|+.|...+
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~-~~n~~~p~~~-~~~I~Vq~Ge~~~ 92 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNN-VINITLPKVG-AEKITVQSGKDGK 92 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCC-ccCCCCCeEE-EEEEEEEeCCCcc
Confidence 344444444433 445677778787 7776555544 5789999887665
No 105
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.55 E-value=2.2e+02 Score=21.17 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.3
Q ss_pred eeEEEcCceEEEEEecCCCCcCcEEEEEeCCeEEEEEE
Q 028228 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISG 123 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~g 123 (212)
.+|.+.+| .|.+..||++ .|+|+.+++ .|-|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~k-kL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENK-KLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccc-eEEEec
Confidence 67888888 7888999986 488888887 688887
No 106
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=21.25 E-value=1.2e+02 Score=18.70 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=18.5
Q ss_pred CceEEEEEecCCCCcCcEEEEEeCCeEEEEE
Q 028228 92 DQAYVLKAELPGVGKNQVQVSVENGKIVEIS 122 (212)
Q Consensus 92 ~~~y~v~~dlPG~~~edI~V~v~~~~~L~I~ 122 (212)
+++-.+.+.|-..+-+.+.|.+.+|+.++|.
T Consensus 9 ~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 9 PKEGFVKGEIIEEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp SSSSEEEEEEEEEESSEEEEEETTTEEEEEE
T ss_pred CcccEEEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 3333444555556667777777777655554
No 107
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=21.19 E-value=77 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.1
Q ss_pred CCCcCcEEEEEeCCeEEEEEEEe
Q 028228 103 GVGKNQVQVSVENGKIVEISGQW 125 (212)
Q Consensus 103 G~~~edI~V~v~~~~~L~I~g~~ 125 (212)
-|+++.|.|....| .|+|+|+.
T Consensus 21 sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcE-EEEEEcce
Confidence 35788899999888 89999974
No 108
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=20.94 E-value=1.3e+02 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.8
Q ss_pred CCeEEEEeCCCEEEEEEeC
Q 028228 159 RKTEAYLSNDVFLEIRIPK 177 (212)
Q Consensus 159 ~~i~A~~~nGgvL~I~lPK 177 (212)
..+.+.+.+| ||+|+++.
T Consensus 30 ~d~d~e~~~g-VLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGG-VLTIEFPD 47 (109)
T ss_dssp STEEEEEETT-EEEEEETT
T ss_pred CceEEEccCC-EEEEEECC
Confidence 3578899988 99999965
No 109
>PRK10568 periplasmic protein; Provisional
Probab=20.89 E-value=1.4e+02 Score=24.77 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCCcCcEEEEEeCCeEEEEEEEeec
Q 028228 102 PGVGKNQVQVSVENGKIVEISGQWKE 127 (212)
Q Consensus 102 PG~~~edI~V~v~~~~~L~I~g~~~~ 127 (212)
++++..+|+|.+.+| .++++|.-..
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 566678999999999 8999999874
No 110
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=20.56 E-value=1e+02 Score=21.65 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=24.4
Q ss_pred eeEEEcCceEEEEEecCCCCcCcEEEEEeCCe
Q 028228 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGK 117 (212)
Q Consensus 86 ~di~e~~~~y~v~~dlPG~~~edI~V~v~~~~ 117 (212)
-.|.+..+.|.|.+.+=|+....|.+.-.||.
T Consensus 13 RtWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~ 44 (70)
T PF03983_consen 13 RTWTDRTGKFKVEAEFVGVNDGKVHLHKTNGV 44 (70)
T ss_dssp EEEEBSSS--EEEEEEEEEETTEEEEE-TTS-
T ss_pred eEEEeCCCCEEEEEEEEEeeCCEEEEEecCCe
Confidence 35777889999999999999999999888883
Done!