RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028228
(212 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 130 bits (329), Expect = 1e-39
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 85 SVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEH 144
VDW +T +A+V KA++PGV K V+V VE+G+++ ISG+ K++ + + DW
Sbjct: 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60
Query: 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 177
FVRR LPE+AD + +A+L N V L + +PK
Sbjct: 61 RFVRRFRLPENADADEVKAFLENGV-LTVTVPK 92
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 82.6 bits (205), Expect = 6e-21
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGF 146
D +TD AYV++A+LPG K ++V VE+G + ISG+ +E+ + R + F
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLT-ISGEREEEEEEEENYLRRERSYGS-F 58
Query: 147 VRRLELPEDADWRKTEAYLSNDVFLEIRIPK 177
R LPED D K +A L N V L I +PK
Sbjct: 59 SRSFRLPEDVDPDKIKASLENGV-LTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 68.8 bits (169), Expect = 9e-16
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFV 147
W QTD V+ +LPGV K ++V VE+ + ISG+ +E+ + ++ G F
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLT-ISGKREEEEE---RERSYGE-----FE 51
Query: 148 RRLELPEDADWRKTEAYLSNDVFLEIRIPK 177
R ELPED D K++A L N V LEI +PK
Sbjct: 52 RSFELPEDVDPEKSKASLENGV-LEITLPK 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 70.5 bits (173), Expect = 1e-15
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 49 FSPLLF-GKFFDPSDAFPLWEFESDVLLSHLQSTGQSSVDWLQTDQAYVLKAELPGVGKN 107
F PLL FD F L + TG VD +TD Y + AELPGV K
Sbjct: 12 FFPLLRDSPGFDR-------LFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDKE 64
Query: 108 QVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167
++++VE + I G+ +E+ + + + F R LPE D +A N
Sbjct: 65 DIEITVEGNT-LTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN 123
Query: 168 DVFLEIRIPKNPSTCDISHG 187
+ L + +PK
Sbjct: 124 GL-LTVTLPKAEPEEKKPKR 142
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 64.9 bits (159), Expect = 6e-14
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGF 146
D + A+V+K ++PG +++V VE+ +++ KE+ D RS + F
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEED--DHGLRSERSYRS-F 57
Query: 147 VRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179
R+ LPE+AD K +A L + V L + +PK
Sbjct: 58 SRKFVLPENADPDKVKASLKDGV-LTVTVPKLE 89
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 44.8 bits (107), Expect = 1e-06
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDW-------RS 138
D +TD Y+++A+LPG K +++ ++G + IS + E +D + K
Sbjct: 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLT-ISAKRDESKDEKDKKGNYIRRERYY 61
Query: 139 GHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 177
G F R LP + D + +A N V L+I +PK
Sbjct: 62 GS-----FSRSFYLP-NVDEEEIKAKYENGV-LKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 37.9 bits (89), Expect = 3e-04
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 18/76 (23%)
Query: 107 NQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHG-----FVRRLELPEDADWRKT 161
+++V V + K + + G+ +E+ D EHG F RR +LPE D
Sbjct: 21 EELKVKVSDNK-LVVEGKHEERED------------EHGYVSREFTRRYQLPEGVDPDSV 67
Query: 162 EAYLSNDVFLEIRIPK 177
+ LS+D L I PK
Sbjct: 68 TSSLSSDGVLTIEAPK 83
>gnl|CDD|198432 cd10034, UDG_like_2, Uncharacterized subfamily of Uracil-DNA
glycosylases. This is a subfamily of Uracil-DNA
glycosylase superfamily. Uracil-DNA glycosylases (UDG)
catalyze the removal of uracil from DNA to initiate DNA
base excision repair pathway. Uracil in DNA can arise as
a result of mis-incorporation of dUMP residues by DNA
polymerase or deamination of cytosine. Uracil mispaired
with guanine in DNA is one of the major pro-mutagenic
events, causing G:C->A:T mutations. UDG is an essential
enzyme for maintaining the integrity of genetic
information. This ubiquitously found enzyme hydrolyzes
the N-glycosidic bond of deoxyuridine in DNA.
Length = 141
Score = 30.0 bits (68), Expect = 0.41
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 13 DRTPHKWIVALGEDVFRRFLSQGNPAVHKAFGD 45
D K IV LGE+VF L + G
Sbjct: 83 DLIKPKIIVPLGEEVFEALLFEYTNDFELIHGK 115
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaB-crystallin
(HspB5, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4
does not belong to this group. HspB5 shows increased
synthesis in response to stress. HspB5 is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. Its functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Length = 84
Score = 28.8 bits (64), Expect = 0.54
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 116 GKIVEISGQWKEQRDPRAKDWRSGHWWEHGFV-----RRLELPEDADWRKTEAYLSNDVF 170
G +EI G+ +E++D EHGF+ R+ +P D D + LS D
Sbjct: 29 GDFIEIHGKHEERQD------------EHGFISREFQRKYRIPADVDPLTITSSLSPDGV 76
Query: 171 LEIRIPK 177
L + P+
Sbjct: 77 LTVCGPR 83
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 28.7 bits (64), Expect = 0.64
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 90 QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFV-- 147
QT + + ++ ++ V ++G +VEI+G+ +E++D EHGFV
Sbjct: 7 QTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQD------------EHGFVSR 53
Query: 148 ---RRLELPEDADWRKTEAYLSNDVFLEIRIP 176
R+ LP D + LS D L + P
Sbjct: 54 CFTRKYTLPPGVDPTAVTSSLSPDGILTVEAP 85
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 28.2 bits (63), Expect = 0.93
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 17/67 (25%)
Query: 116 GKIVEISGQWKEQRDPRAKDWRSGHWWEHGFV-----RRLELPEDADWRKTEAYLSNDVF 170
G VEI G+ +E++D EHGF+ RR LP D + LS D
Sbjct: 29 GDFVEIHGKHEERQD------------EHGFISREFHRRYRLPPGVDPAAITSSLSADGV 76
Query: 171 LEIRIPK 177
L I P+
Sbjct: 77 LTISGPR 83
>gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an
unusual, industrially important polysaccharide in which
short alpha-1,4 chains (maltotriose) are connected in
alpha-1,6 linkages. Enzymes that cleave alpha-1,6
linkages in pullulan and release maltotriose are called
pullulanases although pullulan itself may not be the
natural substrate. This family consists of pullulanases
related to the subfamilies described in TIGR02102 and
TIGR02103 but having a different domain architecture
with shorter sequences. Members are called type I
pullulanases.
Length = 605
Score = 28.8 bits (65), Expect = 2.5
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 14/52 (26%)
Query: 119 VEISGQWKEQRDPRAK------------DWRSGHW--WEHGFVRRLELPEDA 156
V I+G+W+E DP AK D + WE RLE PEDA
Sbjct: 77 VCINGKWRETVDPYAKAVTVNGKRGAVIDLEETNPEGWEKDHGPRLENPEDA 128
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaA-crystallin
(HspB4, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 does not belong to this group. Mutations
inHspB4 have been associated with Autosomal Dominant
Congenital Cataract (ADCC). The chaperone-like functions
of HspB4 are considered important for maintaining lens
transparency and preventing cataract.
Length = 86
Score = 26.1 bits (57), Expect = 5.7
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 119 VEISGQWKEQRDPRAKDWRSGHWWEHGFV-----RRLELPEDADWRKTEAYLSNDVFLEI 173
VEI G+ E++D +HG++ RR LP + D LS D L
Sbjct: 35 VEIHGKHSERQD------------DHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82
Query: 174 RIPK 177
PK
Sbjct: 83 SGPK 86
>gnl|CDD|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology
domain of SNARE proteins from fungi. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions such as cell signaling,
vesicular trafficking, protein sorting, and lipid
modification, among others. This subfamily is composed
of fungal proteins similar to Saccharomyces cerevisiae
Vam7p. They contain an N-terminal PX domain and a
C-terminal SNARE domain. The SNARE (Soluble NSF
attachment protein receptor) family of proteins are
integral membrane proteins that serve as key factors for
vesicular trafficking. Vam7p is anchored at the vacuolar
membrane through the specific interaction of its PX
domain with phosphatidylinositol-3-phosphate (PI3P)
present in bilayers. It plays an essential role in
vacuole fusion. The PX domain is involved in targeting
of proteins to PI-enriched membranes, and may also be
involved in protein-protein interaction.
Length = 108
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 146 FVRRLELPEDADWRKTEAYLSNDVFLEIR 174
F+R L ED+ WR + A FL +
Sbjct: 83 FLRALLNDEDSRWRNSPAVKE---FLNLP 108
>gnl|CDD|182761 PRK10828, PRK10828, putative oxidoreductase; Provisional.
Length = 183
Score = 27.0 bits (60), Expect = 5.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 136 WRSGHWWEHGFVR 148
WRSG W E VR
Sbjct: 131 WRSGAWTESPVVR 143
>gnl|CDD|220508 pfam09992, DUF2233, Predicted periplasmic protein (DUF2233). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 166
Score = 26.9 bits (60), Expect = 6.4
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 113 VENGKIVEISGQWKEQRDPR 132
V NGK+V R PR
Sbjct: 72 VRNGKVVPDGSDEGFGRAPR 91
>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5.
Length = 387
Score = 27.2 bits (60), Expect = 7.0
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 109 VQVSVENGKIV----EISGQWKEQRDPRAKDWRSGHWWEH 144
V + GK V EISG RD + +GHWW H
Sbjct: 180 VDIDAVQGKRVLKLEEISGNANAWRDADVLIFNTGHWWSH 219
>gnl|CDD|130287 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kinase, ERG8-type,
Gram-positive branch. This enzyme is part of the
mevalonate pathway, one of two alternative pathways for
the biosynthesis of IPP. In an example of nonorthologous
gene displacement, two different types of
phosphomevalonate kinase are found - the animal type and
this ERG8 type. This model represents the low GC
Gram-positive organism forms of the ERG8 type of
phosphomevalonate kinase [Central intermediary
metabolism, Other].
Length = 358
Score = 26.8 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 159 RKTEAYLSNDVFLEIRIPKNPSTCDISHGNGAATKNSEA 197
R+ A L ++V + I K + CD + G A K S A
Sbjct: 281 RQELARLDDEVGVGIETEKLKALCDAAEAYGGAAKPSGA 319
>gnl|CDD|235641 PRK05904, PRK05904, coproporphyrinogen III oxidase; Provisional.
Length = 353
Score = 26.7 bits (59), Expect = 9.9
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 132 RAKDWRSGHWWEHGFVRRLELPEDA---DWRKTEAYLSNDVFLE 172
R KDW + W HGF +E D +W + L++ +
Sbjct: 252 RTKDWAAIGWGAHGFENNIEYFFDGSIQNWILIKKVLTDHELYQ 295
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.424
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,888,316
Number of extensions: 997182
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 818
Number of HSP's successfully gapped: 28
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)