RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028228
(212 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 91.6 bits (228), Expect = 6e-24
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 46 GSLFSPLLFGKFF-DPSDAFPLWEFESDVLLSHLQSTGQSSVDWLQTDQAYVLKAELPGV 104
++F P F + DP D F S + + +DW +T +A+V KA+LPGV
Sbjct: 7 SNVFDP--FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGV 64
Query: 105 GKNQVQVSVENGKIVEISGQWKEQRDPRAKDW-----RSGHWWEHGFVRRLELPEDADWR 159
K +V+V VE+G ++ +SG+ ++++ + W SG FVRR L EDA
Sbjct: 65 KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK-----FVRRFRLLEDAKVE 119
Query: 160 KTEAYLSNDVFLEIRIPKNP 179
+ +A L N V L + +PK
Sbjct: 120 EVKAGLENGV-LTVTVPKAE 138
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 79.4 bits (197), Expect = 1e-19
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 85 SVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDW-----RSG 139
VD + +VL A+LPG+ +Q++V ++ G I+ I G+ K + + + R G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 140 HWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179
F RR LP+ AD A N V LEIRIPK P
Sbjct: 65 S-----FHRRFALPDSADADGITAAGRNGV-LEIRIPKRP 98
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 80.9 bits (200), Expect = 1e-19
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 50 SPLLFGKFFDPSDAFPLWEFESDVLLSHLQSTGQS--SVDWLQTDQAYVLKAELPGVGKN 107
+P+ S P ES + + +Q +G+ + ++ DQ + A LPGV K
Sbjct: 21 TPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKE 80
Query: 108 QVQVSVENGKIVEISGQWKEQRDPRAKDW------RSGHWWEHGFVRRLELPEDADWRKT 161
+ ++ +EI + ++ R ++LP
Sbjct: 81 DIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEE-----IYRTIKLPATVKEENA 134
Query: 162 EAYLSNDVFLEIRIPKNPST 181
A N V L + +PK S+
Sbjct: 135 SAKFENGV-LSVILPKAESS 153
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 73.4 bits (181), Expect = 3e-17
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 85 SVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWK-EQRDPRAKDWRSGHWWE 143
VD + V+ A+L G K +++ V + I + + + + R
Sbjct: 26 PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPK---- 81
Query: 144 HGFVRRLELPEDADW-RKTEAYLSNDVFLEIRIPKNPST 181
+ + LP + + N V L IRIP ++
Sbjct: 82 -YVRKVIRLPYNVAKDAEISGKYENGV-LTIRIPIAGTS 118
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 59.4 bits (144), Expect = 4e-12
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 91 TDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRL 150
+ + ++ ++ V V VE+ + +E+ D + F RR
Sbjct: 9 DPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARHEERPD-------EHGFIAREFHRRY 60
Query: 151 ELPEDADWRKTEAYLSNDVFLEIRIPKNP 179
LP D + LS + L I+
Sbjct: 61 RLPPGVDPAAVTSALSPEGVLSIQATPAS 89
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 57.8 bits (140), Expect = 1e-11
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 91 TDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRL 150
+ + ++ +++V V +E+ G+ +E++D + F R+
Sbjct: 4 EKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKHEERQD-------EHGFISREFHRKY 55
Query: 151 ELPEDADWRKTEAYLSNDVFLEIRIPKNP 179
+P D D + +S+D L + P+
Sbjct: 56 RIPADVDPLTITSSMSSDGVLTVNGPRKQ 84
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 58.4 bits (141), Expect = 4e-11
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 36 NPAVHKAFGDGSLFSPLL---FGKFFDPSDAFPLWEFESD------VLLSHLQSTGQSSV 86
+P + + F S L FG+ SD FP S L
Sbjct: 7 HPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLS 66
Query: 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGF 146
+ + + ++ +++V V +E+ G+ +E++D + F
Sbjct: 67 EMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKHEERQD-------EHGFISREF 118
Query: 147 VRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179
R+ +P D D + LS+D L + P+
Sbjct: 119 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQ 151
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 56.8 bits (137), Expect = 5e-11
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 82 GQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHW 141
G + +V+ ++ + V V+ + EI G+ E++D +
Sbjct: 1 GSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFV-EIHGKHNERQD-------DHGY 52
Query: 142 WEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPS 180
F RR LP + D LS D L PK PS
Sbjct: 53 ISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPS 91
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 55.8 bits (135), Expect = 6e-11
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 90 QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRR 149
T + + ++ +++ V ++G VEI+G+ ++D + F R+
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGV-VEITGKHAARQD-------EHGYISRCFTRK 55
Query: 150 LELPEDADWRKTEAYLSNDVFLEIRIPK 177
LP D + + LS + L + P
Sbjct: 56 YTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 46.4 bits (109), Expect = 2e-06
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 19/173 (10%)
Query: 48 LFSPLLFGKFFDPSDAF--PLWEFESDVLLSHLQSTGQSSVDWLQT--------DQAYVL 97
LFS F + ++ + + L+ T +D+L+ + +
Sbjct: 57 LFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKV 116
Query: 98 KAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDAD 157
+ ++ + + K+V + Q K A S R + LP D
Sbjct: 117 YFNVKNFKAEEITIKADKNKLV-VRAQ-KSVACGDAAMSES-------VGRSIPLPPSVD 167
Query: 158 WRKTEAYLSNDVFLEIRIPKNPSTCDISHGNGAATKNSEAMPTILFQNVVQNH 210
+A ++ D L I P N + + Q V+N
Sbjct: 168 RNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNK 220
Score = 42.5 bits (99), Expect = 3e-05
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGF 146
+ + ++ P V+V + K+ + G ++ K + H F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEE----KTENASHSEHREF 282
Query: 147 VRRLELPEDADWRKTEAYLSNDVFLEIRIPK 177
+ PE D KT+A + + + + + P
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGL-MVVEAPL 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.023
Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 83/222 (37%)
Query: 16 PHK-WIVA--LGEDVFRRFLSQGNPAVHKAF-GDGSLFSPL-LFGKF--F-----DPSDA 63
P + +A L E F + L P + F D +P L GKF + +PS
Sbjct: 23 PTASFFIASQLQEQ-FNKIL----PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 64 --------FPLWEFES------DV------LLSHLQSTGQSSVDWLQTDQAY-----VLK 98
L EFE+ D+ LL +T + + + + Y + K
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---KNYITARIMAK 134
Query: 99 AELPGVGKNQVQVSVENG--KIVEI-SGQ------WKEQRD------PRAKDW------- 136
+ + +V G ++V I GQ ++E RD D
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 137 ---------RSGHWWEHGF-VRR-LELPEDA-DWRKTEAYLS 166
+ + G + LE P + D + YL
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPD----KDYLL 232
Score = 32.7 bits (74), Expect = 0.094
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 38/134 (28%)
Query: 62 DAFPLWEFESDVLLSHLQST-GQSS----VDWLQTDQ--AYVLK--AELPGVGKNQVQVS 112
+A+P +L L++ G S + L +Q YV K + LP QV++S
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQVEIS 369
Query: 113 VENG--KIVEISGQWKEQRDPRAKDWRSGHWWEHGFV---RRLELPEDADWRKTE----- 162
+ NG +V +SG P++ +G R+ + P D +
Sbjct: 370 LVNGAKNLV-VSG------PPQSL---------YGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 163 AYLSNDVFLEIRIP 176
SN FL + P
Sbjct: 414 LKFSN-RFLPVASP 426
Score = 28.9 bits (64), Expect = 1.4
Identities = 21/125 (16%), Positives = 31/125 (24%), Gaps = 39/125 (31%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDGSL-----F-SPLL-------------FGKF 57
K G D R S+ F L F S LL
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRF----LPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 58 FDPSD-AFPLW---------EFESDVLLSHLQSTGQSSVDWLQTDQA---YVL---KAEL 101
F+ D P++ + + + V W T Q ++L
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 102 PGVGK 106
G+G
Sbjct: 510 SGLGV 514
Score = 28.9 bits (64), Expect = 1.5
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 33/127 (25%)
Query: 20 IVALGEDVFRRFLSQGNPAVHKAFGDG-SL--FSPLLFGKFFDPSDAFPLWEFESDVLLS 76
+ + + F S+G F G SL ++ L +D ES V +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFA-GHSLGEYAALA-----SLADVMS---IESLVEVV 1786
Query: 77 HLQSTGQSSVDWLQTDQA----YVLKAELPG-----VGKNQVQ-----VSVENGKIVEI- 121
+ G + + D+ Y + A PG + +Q V G +VEI
Sbjct: 1787 FYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 122 ----SGQ 124
Q
Sbjct: 1845 NYNVENQ 1851
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.10
Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 61/203 (30%)
Query: 2 TSCIKLEVHTDDRTPHKWIVALGEDVFRRFLSQGN----PAVHKAFGDGSLFSPL---LF 54
T+ I L+ H+ TP + + + ++L V +P +
Sbjct: 286 TTHISLDHHSMTLTPDE-----VKSLLLKYLDCRPQDLPREVLTT-------NPRRLSII 333
Query: 55 GKFFDPSDAFPLWEFESDVLLSHLQSTGQSSVDWLQTD---QAYVLKAELPGVGKNQVQV 111
+ D W+ V L + +SS++ L+ + + + P
Sbjct: 334 AESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--------- 382
Query: 112 SVENGKIVE--ISGQWKE--QRDPR------------AKDWRSGHWWEHGFVRRLELPED 155
+ I +S W + + D K + L++ +
Sbjct: 383 --PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 156 AD----------WRKTEAYLSND 168
+ + + + S+D
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDD 463
Score = 31.0 bits (69), Expect = 0.29
Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 51/178 (28%)
Query: 54 FGKFFDPSDAFPLWEFESDVL----LSHLQSTGQSSVDWLQTDQAYVLKAELPGVGKNQV 109
F FD D + + +L + H+ + L L + V
Sbjct: 29 FVDNFDCKD---VQDMPKSILSKEEIDHIIMSKD------AVSGTLRLFWTLLSKQEEMV 79
Query: 110 QVSVENGKIVEISGQW------KEQRDP----------RAKDWRSGHWWEHGFVRRLELP 153
Q VE ++ I+ ++ EQR P R + + + V RL+
Sbjct: 80 QKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 154 EDADWRKTEAYLSNDVFLEIRIPKNPSTCDISHGNGAATKNSEAMPTILFQNVVQNHK 211
R+ LE+R P+ + G + K T + +V ++K
Sbjct: 138 LKL--RQ--------ALLELR----PAKNVLIDGVLGSGK------TWVALDVCLSYK 175
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 31.0 bits (71), Expect = 0.23
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ +D RR G P H F +
Sbjct: 89 HDDLPAMDDDELRR----GKPTCHIQFDEA 114
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 31.0 bits (71), Expect = 0.23
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + + D RR G P VHK + D
Sbjct: 80 HDDMPCMDNDDLRR----GLPTVHKKWDDA 105
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 31.0 bits (71), Expect = 0.24
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ +D RR G P HKAF +
Sbjct: 83 HDDLPAMDDDDLRR----GQPTTHKAFDEA 108
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Mus
musculus} SCOP: a.39.1.11
Length = 151
Score = 30.5 bits (68), Expect = 0.24
Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 25 EDVFRRFLSQGNPAVHKAFGDGSLF------SPLLFGKFFDPSDAFPLWEFESDVLLSHL 78
E+ FR+F G+P +G + + GK +D D++ S +
Sbjct: 18 EESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKAVTGTDV--------DIVFSKV 69
Query: 79 QSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISG 123
++ +++ + +A A GK++ + +++
Sbjct: 70 KAKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLIAGKE 114
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 30.7 bits (70), Expect = 0.27
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ D RR G P H FG G
Sbjct: 89 HDDLPAMDNDALRR----GEPTNHVKFGAG 114
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 30.7 bits (70), Expect = 0.28
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ +D RR G P HKA+ +
Sbjct: 89 HDDLPAMDDDDLRR----GKPTCHKAYDEA 114
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 30.6 bits (70), Expect = 0.29
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ +D RR G P H FG+
Sbjct: 83 HDDLPAMDDDDLRR----GLPTCHVKFGEA 108
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 30.7 bits (70), Expect = 0.31
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ D RR G P+ HKAF +
Sbjct: 89 HDDLPAMDNDDLRR----GKPSCHKAFDEA 114
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 30.7 bits (70), Expect = 0.34
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ D RR G P H F +
Sbjct: 84 HDDLPAMDNDELRR----GKPTCHIQFDEA 109
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 30.3 bits (69), Expect = 0.38
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ D +RR G HK +G+
Sbjct: 81 HDDLPAMDNDDYRR----GKLTNHKVYGEW 106
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 28.4 bits (64), Expect = 0.39
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 172 EIRIPKNPSTCDISHGNGAA 191
EIRIP CD+ HG+GA
Sbjct: 5 EIRIPT-LEECDVCHGSGAK 23
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 30.3 bits (69), Expect = 0.42
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + + D RR G P HK FG+
Sbjct: 113 HDDLPCMDNDDLRR----GKPTNHKVFGEA 138
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution
structure, structural genomics, PSI-2, protein structure
initiative; NMR {Homo sapiens}
Length = 184
Score = 29.8 bits (66), Expect = 0.47
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 25 EDVFRRFLSQGNPAVHKAFGDGSLF------SPLLFGKFFDPSDAFPLWEFESDVLLSHL 78
E+ FR+F G+P +G + + GK +D D++ S +
Sbjct: 11 EESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDV--------DIVFSKV 62
Query: 79 QSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISG 123
+ +++ + +A A GK++ + ++V
Sbjct: 63 KGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKE 107
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 29.9 bits (68), Expect = 0.50
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ +D RR G P HK FG+
Sbjct: 90 HDDLPAMDDDDLRR----GKPTNHKVFGEA 115
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 29.9 bits (68), Expect = 0.53
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + A+ FRR G P +HK++ +
Sbjct: 79 HDDLPAMDNADFRR----GIPTLHKSYDET 104
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 29.6 bits (67), Expect = 0.66
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 17 HKWIVALGEDVFRRFLSQGNPAVHKAFGDG 46
H + + RR +P +H + +
Sbjct: 93 HDDLPCMDNAALRR----NHPTLHAKYDET 118
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein
structure initiative, NESG, CPR biology; 2.50A
{Clostridium perfringens}
Length = 128
Score = 28.5 bits (63), Expect = 0.84
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 105 GKNQVQVSVENGKIVEISGQWKEQRDPRAKDW 136
K ++ + V +GKI E K
Sbjct: 19 YKAKLSIKVSDGKITEAKYNEFNGETNAMKRE 50
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 29.2 bits (66), Expect = 0.90
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 26 DVFRRFLSQGNPAVHKAFGDG 46
D RR G P VH+ F +
Sbjct: 133 DDLRR----GQPTVHRKFDEA 149
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding;
NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Length = 68
Score = 27.4 bits (61), Expect = 0.94
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 149 RLELPEDADWRKTEAYLSNDVFLEI 173
R +LP D + E +LS + F +
Sbjct: 18 RTKLPPGVDRMRLERHLSAEDFSRV 42
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 27.9 bits (63), Expect = 0.98
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 172 EIRIPKNPSTCDISHGNGAA 191
E + TC+ +G G
Sbjct: 22 EFTVNIM-DTCERCNGKGNE 40
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.0
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 124 QWKEQRDPR--AKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178
+W+E++ R D V E E A E +E N
Sbjct: 89 KWREEQRKRLQELD-------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.1 bits (65), Expect = 1.3
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 101 LPGVGKNQVQVSVENGKIVEISGQWKEQRDPRA-KDWRSGHWWEHGFVRRLELPEDADWR 159
LP +G V +E +I K D A ++WR G R ++ + +W
Sbjct: 370 LPSIGNLIVDA-MEGKVPQKIHELIKWNPDIAANRNWRDTLGRFGGPNRVMDFHDVKEWT 428
Query: 160 KTE 162
+
Sbjct: 429 NVQ 431
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping,
actin-binding, alternative splicing, calcium, cytoplasm,
cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Length = 67
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 151 ELPEDADWRKTEAYLSNDVFLEI 173
LPE D K E YL+++ F
Sbjct: 19 PLPEGVDPLKLEIYLTDEDFEFA 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 28.7 bits (65), Expect = 1.4
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 26 DVFRRFLSQGNPAVHKAFGDG 46
D RR G P HK +G+
Sbjct: 100 DDLRR----GKPTNHKVYGED 116
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Homo sapiens}
SCOP: a.14.1.1 PDB: 2l3x_A
Length = 88
Score = 27.2 bits (60), Expect = 1.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 149 RLELPEDADWRKTEAYLSNDVFLEI 173
R LP+D D + E +LS + F ++
Sbjct: 32 RNRLPKDVDRTRLERHLSQEEFYQV 56
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 28.6 bits (65), Expect = 1.5
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 20 IVALGEDVFRRFLSQGNPAVHKAFGDGSLFSP 51
+VA G +V R FL + DG
Sbjct: 54 VVASGIEVSRMFLEKMGLLSKFNVEDGEYLEG 85
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 26.4 bits (58), Expect = 4.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 76 SHLQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKI 118
SH+ + DW QT+ V+ + V KN V V ++
Sbjct: 2 SHMTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.1
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 1 MTSCIKLEVHTDDRTPHKWIVALG 24
+ + +KL + DD P AL
Sbjct: 25 LQASLKL--YADDSAP-----ALA 41
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus
gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A
1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Length = 67
Score = 25.1 bits (55), Expect = 6.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 148 RRLELPEDADWRKTEAYLSNDVFLEI 173
+LP D E +LS++ F +
Sbjct: 16 AAEDLPRGVDPSAKENHLSDEDFKAV 41
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: AMP; 1.94A {Bifidobacterium
adolescentis} PDB: 3e0f_A*
Length = 301
Score = 26.5 bits (59), Expect = 7.4
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 7/30 (23%)
Query: 16 PH--KWIVALG-----EDVFRRFLSQGNPA 38
PH +VA G D F +S +
Sbjct: 147 PHIADALVAAGVYETRSDAFADAVSAKSKY 176
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA
replication, replication; 2.65A {Thermococcus
kodakarensis}
Length = 171
Score = 25.5 bits (55), Expect = 10.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 117 KIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLE 151
K+++ G WK +DW++ WE G V ++
Sbjct: 18 KVMKPFGDWKSGDIVLVEDWKARELWEAGVVEIVD 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.424
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,377,233
Number of extensions: 192663
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 53
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)