RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028228
         (212 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 76.7 bits (188), Expect = 1e-18
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 46  GSLFSPLLFGKFFDPSDAFPLWEFESDVLLSHLQSTGQSSVDWLQTDQAYVLKAELPGVG 105
            ++F P     + DP D F           S   +   + +DW +T +A+V KA+LPGV 
Sbjct: 6   SNVFDPF-ADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165
           K +V+V VE+G ++ +SG+  ++++ +   W         FVRR  L EDA   + +A L
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 124

Query: 166 SNDVFLEIRIPKNP 179
            N V L + +PK  
Sbjct: 125 ENGV-LTVTVPKAE 137


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 67.0 bits (163), Expect = 3e-15
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 78  LQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWR 137
           +   G   +  ++ DQ   + A LPGV K  + ++     +   + +         +   
Sbjct: 5   ISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIY 64

Query: 138 SGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPK 177
           S    E    R ++LP         A   N V L + +PK
Sbjct: 65  SEIPEEEEIYRTIKLPATVKEENASAKFENGV-LSVILPK 103


>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 67

 Score = 26.2 bits (58), Expect = 0.67
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 151 ELPEDADWRKTEAYLSNDVFLEI 173
           +LP   D  + E +LS++ F  +
Sbjct: 19  DLPRGVDPSRKENHLSDEDFKAV 41


>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 68

 Score = 26.2 bits (58), Expect = 0.79
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 151 ELPEDADWRKTEAYLSNDVFLEI 173
           +LP   D  + E +LS + F  +
Sbjct: 20  KLPPGVDRMRLERHLSAEDFSRV 42


>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 26.3 bits (58), Expect = 1.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 151 ELPEDADWRKTEAYLSNDVFLEI 173
            LP+D D  + E +LS + F ++
Sbjct: 34  RLPKDVDRTRLERHLSQEEFYQV 56


>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
           kinesin eg5 [TaxId: 9606]}
          Length = 345

 Score = 26.1 bits (56), Expect = 3.1
 Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 11/152 (7%)

Query: 67  WEFESDVLLSHLQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQW- 125
              E  V +S L+   +   D L        + ++    +N+  V ++  + + +  +  
Sbjct: 133 NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDE 192

Query: 126 -----KEQRDPRA----KDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176
                ++    R                 F   + + E     +    +     +++   
Sbjct: 193 VYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGS 252

Query: 177 KNPSTCDISHGNGAATKNSEAMPTILFQNVVQ 208
           +N               N       L   V+ 
Sbjct: 253 ENIGRSGAVDKRAREAGNINQSLLTL-GRVIT 283


>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH)
           {Thermus thermophilus [TaxId: 274]}
          Length = 172

 Score = 24.8 bits (53), Expect = 7.9
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 1   MTSCIKLEVHTDDRTPHKWIVALGEDVFRRFLSQGNPAVHKAFGDGS 47
               +       +    + ++A+G +   + +   + A    FGDG 
Sbjct: 112 WIYALAQAHALVEAGLAQKVLAVGAEALSKIIDWNDRATAVLFGDGG 158


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 23.7 bits (51), Expect = 8.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 87  DWLQTDQAYVLKAELPGVGKNQVQVSVENGKI 118
           DW QT+   V+   +  V KN V V     ++
Sbjct: 6   DWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 37


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 24.8 bits (54), Expect = 9.1
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 111 VSVENGKIVEISGQWKEQRD 130
           + + NG + E+ G+     D
Sbjct: 41  IKIVNGAVTELDGKPVSDFD 60


>d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 24.4 bits (52), Expect = 9.3
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)

Query: 128 QRDPRAK---DWRSGHWW 142
             D  A+   DWR+G  W
Sbjct: 164 SLDTSAELMCDWRAGDVW 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 853,027
Number of extensions: 39355
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 16
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)