Query 028229
Match_columns 212
No_of_seqs 289 out of 1651
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3029 Glutathione S-transfer 99.8 8.4E-21 1.8E-25 160.3 8.8 114 85-198 88-240 (370)
2 KOG0406 Glutathione S-transfer 99.8 5E-20 1.1E-24 153.5 10.7 100 85-184 7-112 (231)
3 PRK09481 sspA stringent starva 99.8 5.9E-20 1.3E-24 151.8 10.8 98 86-183 9-110 (211)
4 PRK15113 glutathione S-transfe 99.8 2.8E-19 6.1E-24 148.0 11.3 100 86-185 4-115 (214)
5 KOG0868 Glutathione S-transfer 99.8 7.1E-19 1.5E-23 140.0 8.0 115 86-200 4-126 (217)
6 cd03041 GST_N_2GST_N GST_N fam 99.8 2.4E-18 5.3E-23 120.7 9.1 72 87-158 1-77 (77)
7 PF13417 GST_N_3: Glutathione 99.8 2.3E-18 4.9E-23 120.2 8.8 72 90-161 1-74 (75)
8 cd03040 GST_N_mPGES2 GST_N fam 99.8 3E-18 6.5E-23 119.7 9.4 73 87-159 1-77 (77)
9 PLN02473 glutathione S-transfe 99.8 4.7E-18 1E-22 140.1 11.8 103 87-189 2-113 (214)
10 PRK10387 glutaredoxin 2; Provi 99.7 7.3E-18 1.6E-22 138.3 10.5 100 88-189 1-103 (210)
11 cd03055 GST_N_Omega GST_N fami 99.7 1.1E-17 2.3E-22 120.7 9.9 84 72-155 3-89 (89)
12 COG0625 Gst Glutathione S-tran 99.7 1E-17 2.2E-22 138.1 10.8 106 88-193 1-116 (211)
13 PRK13972 GSH-dependent disulfi 99.7 2E-17 4.3E-22 136.8 11.2 99 87-187 1-112 (215)
14 cd03059 GST_N_SspA GST_N famil 99.7 1.7E-17 3.8E-22 114.3 8.9 71 88-158 1-73 (73)
15 cd03037 GST_N_GRX2 GST_N famil 99.7 2.4E-17 5.2E-22 113.5 8.2 69 88-156 1-71 (71)
16 cd03058 GST_N_Tau GST_N family 99.7 6.5E-17 1.4E-21 112.2 8.8 71 88-158 1-74 (74)
17 PRK10357 putative glutathione 99.7 4.3E-17 9.4E-22 133.2 9.0 98 88-185 1-103 (202)
18 PLN02395 glutathione S-transfe 99.7 1.5E-16 3.2E-21 131.2 12.1 102 87-189 2-112 (215)
19 cd03045 GST_N_Delta_Epsilon GS 99.7 8.8E-17 1.9E-21 111.1 8.7 69 88-156 1-74 (74)
20 cd03061 GST_N_CLIC GST_N famil 99.7 7.8E-17 1.7E-21 116.9 8.7 69 93-161 19-89 (91)
21 cd03052 GST_N_GDAP1 GST_N fami 99.7 7.9E-17 1.7E-21 112.1 8.3 68 88-155 1-73 (73)
22 TIGR02182 GRXB Glutaredoxin, G 99.7 9.9E-17 2.1E-21 132.7 10.1 98 89-188 1-101 (209)
23 TIGR01262 maiA maleylacetoacet 99.7 1E-16 2.2E-21 131.6 9.9 97 89-185 1-105 (210)
24 cd03060 GST_N_Omega_like GST_N 99.7 1.7E-16 3.8E-21 109.3 8.5 66 89-154 2-70 (71)
25 cd03080 GST_N_Metaxin_like GST 99.7 2.4E-16 5.1E-21 109.9 8.8 68 87-159 1-75 (75)
26 PRK10542 glutathionine S-trans 99.7 2.5E-16 5.4E-21 128.4 9.1 99 88-187 1-109 (201)
27 cd03053 GST_N_Phi GST_N family 99.7 6.1E-16 1.3E-20 107.5 9.1 70 88-157 2-76 (76)
28 cd03048 GST_N_Ure2p_like GST_N 99.7 8.4E-16 1.8E-20 108.4 9.4 72 87-159 1-80 (81)
29 cd03050 GST_N_Theta GST_N fami 99.7 7E-16 1.5E-20 107.5 8.7 71 88-158 1-76 (76)
30 PRK11752 putative S-transferas 99.6 7.9E-16 1.7E-20 131.8 10.6 97 84-182 41-153 (264)
31 cd03056 GST_N_4 GST_N family, 99.6 6.3E-16 1.4E-20 106.2 8.1 68 88-155 1-73 (73)
32 cd03051 GST_N_GTT2_like GST_N 99.6 6.4E-16 1.4E-20 106.2 7.6 68 88-155 1-74 (74)
33 cd03076 GST_N_Pi GST_N family, 99.6 7E-16 1.5E-20 107.1 7.7 71 87-157 1-73 (73)
34 cd03039 GST_N_Sigma_like GST_N 99.6 1.1E-15 2.5E-20 105.3 7.2 69 88-156 1-72 (72)
35 PLN02378 glutathione S-transfe 99.6 2.3E-15 4.9E-20 124.8 9.5 84 92-176 16-101 (213)
36 KOG0867 Glutathione S-transfer 99.6 2.3E-15 4.9E-20 126.4 9.4 101 87-187 2-111 (226)
37 cd03049 GST_N_3 GST_N family, 99.6 1.8E-15 4E-20 104.5 7.1 68 88-155 1-73 (73)
38 cd03057 GST_N_Beta GST_N famil 99.6 4E-15 8.7E-20 103.8 8.7 71 88-159 1-77 (77)
39 cd03038 GST_N_etherase_LigE GS 99.6 2.7E-15 5.8E-20 106.7 7.8 66 94-159 14-84 (84)
40 cd03042 GST_N_Zeta GST_N famil 99.6 4.6E-15 1E-19 101.9 8.0 68 88-155 1-73 (73)
41 cd03047 GST_N_2 GST_N family, 99.6 5.5E-15 1.2E-19 102.2 8.4 68 88-155 1-73 (73)
42 cd03044 GST_N_EF1Bgamma GST_N 99.6 5.2E-15 1.1E-19 103.0 8.0 68 89-156 2-74 (75)
43 cd03046 GST_N_GTT1_like GST_N 99.6 8.5E-15 1.8E-19 101.5 8.9 71 88-159 1-76 (76)
44 cd00570 GST_N_family Glutathio 99.6 8.1E-15 1.8E-19 98.1 7.7 68 88-155 1-71 (71)
45 PLN02817 glutathione dehydroge 99.6 1E-14 2.2E-19 125.2 9.4 85 93-178 70-156 (265)
46 TIGR02190 GlrX-dom Glutaredoxi 99.6 3E-14 6.5E-19 100.5 9.6 72 84-155 6-79 (79)
47 cd03054 GST_N_Metaxin GST_N fa 99.6 1.8E-14 3.8E-19 99.4 8.2 65 88-157 1-72 (72)
48 cd03077 GST_N_Alpha GST_N fami 99.6 3.4E-14 7.3E-19 100.2 9.3 72 87-159 1-77 (79)
49 PF13409 GST_N_2: Glutathione 99.5 2.1E-14 4.6E-19 98.9 7.5 63 95-157 1-70 (70)
50 TIGR00862 O-ClC intracellular 99.5 3.4E-14 7.3E-19 120.0 10.0 69 93-161 16-86 (236)
51 cd03075 GST_N_Mu GST_N family, 99.5 4.7E-14 1E-18 100.2 8.7 70 89-158 2-82 (82)
52 PTZ00057 glutathione s-transfe 99.5 1.3E-13 2.8E-18 113.4 11.4 90 86-179 3-100 (205)
53 cd03029 GRX_hybridPRX5 Glutare 99.5 3.4E-13 7.4E-18 93.1 9.1 69 87-155 2-72 (72)
54 PF02798 GST_N: Glutathione S- 99.5 3.9E-13 8.4E-18 94.1 9.4 69 88-156 1-76 (76)
55 cd03043 GST_N_1 GST_N family, 99.4 6.7E-13 1.4E-17 92.1 8.6 64 92-155 6-73 (73)
56 PRK10638 glutaredoxin 3; Provi 99.4 1.5E-12 3.2E-17 92.5 9.4 70 87-156 3-75 (83)
57 TIGR02189 GlrX-like_plant Glut 99.4 5.2E-12 1.1E-16 93.0 9.5 74 82-155 4-83 (99)
58 COG2999 GrxB Glutaredoxin 2 [P 99.4 1.3E-12 2.9E-17 104.2 6.5 93 88-182 1-96 (215)
59 cd03027 GRX_DEP Glutaredoxin ( 99.3 4.2E-12 9.2E-17 87.9 7.7 67 86-152 1-70 (73)
60 COG0695 GrxC Glutaredoxin and 99.3 1.2E-11 2.5E-16 87.7 8.8 70 87-156 2-76 (80)
61 TIGR02183 GRXA Glutaredoxin, G 99.3 1.6E-11 3.6E-16 87.9 8.9 72 88-159 2-83 (86)
62 KOG4244 Failed axon connection 99.3 1.9E-11 4.1E-16 103.2 10.6 108 81-197 39-154 (281)
63 TIGR00365 monothiol glutaredox 99.3 1.4E-11 3E-16 90.4 8.0 73 83-155 9-89 (97)
64 cd03079 GST_N_Metaxin2 GST_N f 99.3 1.4E-11 3.1E-16 86.0 7.2 59 95-157 16-74 (74)
65 PHA03050 glutaredoxin; Provisi 99.3 2.9E-11 6.3E-16 90.4 9.3 72 82-153 9-89 (108)
66 PRK11200 grxA glutaredoxin 1; 99.3 3.7E-11 8E-16 85.6 9.4 73 87-159 2-84 (85)
67 cd03418 GRX_GRXb_1_3_like Glut 99.3 3.6E-11 7.7E-16 83.1 8.8 69 87-155 1-73 (75)
68 KOG1695 Glutathione S-transfer 99.3 4.1E-11 9E-16 99.1 9.9 91 87-179 3-95 (206)
69 cd02066 GRX_family Glutaredoxi 99.2 5.5E-11 1.2E-15 80.2 8.7 67 87-153 1-70 (72)
70 cd03028 GRX_PICOT_like Glutare 99.2 5.7E-11 1.2E-15 85.8 8.1 73 83-155 5-85 (90)
71 PRK10824 glutaredoxin-4; Provi 99.2 7E-11 1.5E-15 89.2 7.6 75 81-155 10-92 (115)
72 TIGR02181 GRX_bact Glutaredoxi 99.2 1.4E-10 2.9E-15 81.3 8.4 69 88-156 1-72 (79)
73 PRK10329 glutaredoxin-like pro 99.2 1.7E-10 3.8E-15 81.9 8.1 60 87-146 2-63 (81)
74 cd03419 GRX_GRXh_1_2_like Glut 99.1 5.4E-10 1.2E-14 78.3 9.1 70 87-156 1-76 (82)
75 TIGR02196 GlrX_YruB Glutaredox 99.1 6.2E-10 1.3E-14 75.5 8.2 68 87-154 1-73 (74)
76 cd03078 GST_N_Metaxin1_like GS 99.1 7E-10 1.5E-14 77.2 8.3 58 95-157 15-72 (73)
77 PF00462 Glutaredoxin: Glutare 99.1 2.7E-10 5.9E-15 75.8 5.9 57 88-144 1-60 (60)
78 KOG4420 Uncharacterized conser 99.1 2E-10 4.3E-15 96.8 6.0 76 87-162 26-106 (325)
79 KOG1752 Glutaredoxin and relat 99.1 1.2E-09 2.6E-14 81.1 9.0 75 81-155 9-89 (104)
80 TIGR02194 GlrX_NrdH Glutaredox 99.1 6.6E-10 1.4E-14 76.7 7.1 58 88-145 1-61 (72)
81 TIGR02180 GRX_euk Glutaredoxin 99.0 1.4E-09 3.1E-14 76.2 8.6 69 88-156 1-77 (84)
82 cd02976 NrdH NrdH-redoxin (Nrd 99.0 3.1E-09 6.8E-14 71.9 7.8 61 87-147 1-64 (73)
83 TIGR02200 GlrX_actino Glutared 98.9 6.2E-09 1.3E-13 71.7 8.5 69 87-155 1-76 (77)
84 KOG1422 Intracellular Cl- chan 98.9 6.8E-09 1.5E-13 85.1 8.1 72 94-165 19-92 (221)
85 PLN02907 glutamate-tRNA ligase 98.9 8.7E-09 1.9E-13 99.3 10.0 83 88-181 3-88 (722)
86 PTZ00062 glutaredoxin; Provisi 98.8 9.8E-09 2.1E-13 85.0 7.8 75 81-155 108-190 (204)
87 cd03031 GRX_GRX_like Glutaredo 98.8 4.6E-08 1E-12 77.0 8.9 69 87-155 1-82 (147)
88 PRK12759 bifunctional gluaredo 98.6 1E-07 2.2E-12 86.7 8.8 66 87-152 3-79 (410)
89 COG0278 Glutaredoxin-related p 98.6 1.4E-07 3.1E-12 68.8 6.3 75 81-155 10-93 (105)
90 cd02973 TRX_GRX_like Thioredox 98.2 3.9E-06 8.4E-11 56.4 6.2 58 87-146 2-65 (67)
91 cd03030 GRX_SH3BGR Glutaredoxi 98.2 1.3E-05 2.8E-10 58.2 7.9 67 88-154 2-81 (92)
92 KOG3027 Mitochondrial outer me 98.0 3.1E-05 6.7E-10 63.8 7.3 97 96-199 34-131 (257)
93 cd03036 ArsC_like Arsenate Red 97.9 1.9E-05 4.2E-10 59.0 4.9 39 88-126 1-41 (111)
94 PRK01655 spxA transcriptional 97.9 2.5E-05 5.4E-10 60.3 5.2 33 87-119 1-33 (131)
95 KOG0911 Glutaredoxin-related p 97.9 3.6E-05 7.8E-10 64.0 6.2 74 83-156 136-217 (227)
96 cd02977 ArsC_family Arsenate R 97.8 3.5E-05 7.6E-10 56.8 5.3 32 88-119 1-32 (105)
97 cd03032 ArsC_Spx Arsenate Redu 97.8 4.1E-05 9E-10 57.6 5.4 33 87-119 1-33 (115)
98 TIGR00412 redox_disulf_2 small 97.8 0.00013 2.8E-09 50.7 7.5 56 87-145 2-61 (76)
99 PF10568 Tom37: Outer mitochon 97.8 0.00015 3.2E-09 50.3 7.1 56 95-155 13-72 (72)
100 PRK12559 transcriptional regul 97.7 7.2E-05 1.6E-09 57.7 5.7 39 87-125 1-41 (131)
101 PRK13344 spxA transcriptional 97.7 8.9E-05 1.9E-09 57.3 5.6 39 87-125 1-41 (132)
102 TIGR00411 redox_disulf_1 small 97.6 0.0005 1.1E-08 47.4 8.4 56 87-142 2-62 (82)
103 PF05768 DUF836: Glutaredoxin- 97.6 0.00051 1.1E-08 48.3 8.3 54 87-141 1-57 (81)
104 cd03035 ArsC_Yffb Arsenate Red 97.6 0.00016 3.5E-09 53.6 5.3 40 88-127 1-42 (105)
105 TIGR01617 arsC_related transcr 97.5 0.00014 3E-09 54.8 4.6 32 88-119 1-32 (117)
106 cd03033 ArsC_15kD Arsenate Red 97.5 0.00023 4.9E-09 53.6 5.6 41 87-127 1-43 (113)
107 PHA02125 thioredoxin-like prot 97.4 0.00063 1.4E-08 47.0 6.2 53 87-142 1-54 (75)
108 COG1393 ArsC Arsenate reductas 97.3 0.00078 1.7E-08 51.0 5.9 40 87-126 2-43 (117)
109 PRK10853 putative reductase; P 97.2 0.00073 1.6E-08 51.2 5.2 41 87-127 1-43 (118)
110 COG4545 Glutaredoxin-related p 97.2 0.0012 2.7E-08 45.8 5.7 59 88-146 4-78 (85)
111 TIGR01616 nitro_assoc nitrogen 97.2 0.00095 2.1E-08 51.2 5.8 40 87-126 2-43 (126)
112 PRK10026 arsenate reductase; P 97.1 0.0011 2.4E-08 51.8 5.7 39 87-125 3-43 (141)
113 PF13192 Thioredoxin_3: Thiore 97.0 0.0057 1.2E-07 42.3 7.8 58 87-147 2-63 (76)
114 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0033 7.1E-08 45.1 6.2 59 85-145 13-77 (89)
115 KOG3028 Translocase of outer m 96.9 0.0055 1.2E-07 53.4 8.4 87 96-187 17-107 (313)
116 cd03034 ArsC_ArsC Arsenate Red 96.8 0.0026 5.7E-08 47.5 5.2 39 88-126 1-41 (112)
117 TIGR00014 arsC arsenate reduct 96.8 0.0028 6.2E-08 47.5 5.2 39 88-126 1-41 (114)
118 cd01659 TRX_superfamily Thiore 96.7 0.0057 1.2E-07 38.1 5.4 52 88-139 1-59 (69)
119 KOG2903 Predicted glutathione 96.0 0.046 1E-06 46.8 8.5 109 73-183 23-185 (319)
120 PF04908 SH3BGR: SH3-binding, 95.6 0.052 1.1E-06 39.9 6.4 69 87-155 2-88 (99)
121 PF00085 Thioredoxin: Thioredo 95.3 0.25 5.5E-06 34.8 9.1 71 86-156 19-102 (103)
122 cd02975 PfPDO_like_N Pyrococcu 95.1 0.054 1.2E-06 40.3 5.4 54 86-139 23-81 (113)
123 TIGR01295 PedC_BrcD bacterioci 95.1 0.16 3.4E-06 38.4 7.9 58 87-144 26-103 (122)
124 PF03960 ArsC: ArsC family; I 94.9 0.045 9.8E-07 40.5 4.3 29 91-119 1-29 (110)
125 TIGR02187 GlrX_arch Glutaredox 94.2 0.19 4.2E-06 41.5 7.0 56 85-140 134-193 (215)
126 cd02949 TRX_NTR TRX domain, no 94.1 0.26 5.7E-06 35.1 6.8 58 87-144 16-80 (97)
127 cd02947 TRX_family TRX family; 94.1 0.41 8.8E-06 32.3 7.4 55 86-142 12-74 (93)
128 PF11287 DUF3088: Protein of u 93.9 0.3 6.6E-06 36.6 6.8 65 96-160 24-109 (112)
129 cd02989 Phd_like_TxnDC9 Phosdu 93.5 0.28 6E-06 36.4 6.1 60 86-145 24-89 (113)
130 PRK10996 thioredoxin 2; Provis 93.0 1.2 2.7E-05 34.1 9.3 59 86-144 54-119 (139)
131 cd02984 TRX_PICOT TRX domain, 93.0 0.39 8.4E-06 33.8 6.0 58 87-144 17-81 (97)
132 TIGR03140 AhpF alkyl hydropero 92.8 0.17 3.7E-06 47.3 5.0 71 85-157 118-198 (515)
133 cd02963 TRX_DnaJ TRX domain, D 92.8 1.1 2.4E-05 32.9 8.4 59 86-144 26-92 (111)
134 PRK15317 alkyl hydroperoxide r 92.6 0.18 3.9E-06 47.2 4.9 71 85-157 117-197 (517)
135 PRK09381 trxA thioredoxin; Pro 92.4 1.7 3.7E-05 31.3 9.0 58 87-144 24-88 (109)
136 KOG2824 Glutaredoxin-related p 92.4 0.32 6.9E-06 41.9 5.7 70 85-154 130-212 (281)
137 TIGR03143 AhpF_homolog putativ 92.2 0.38 8.3E-06 45.5 6.6 60 85-146 477-542 (555)
138 TIGR01068 thioredoxin thioredo 92.2 1.5 3.2E-05 30.5 8.2 56 87-142 17-79 (101)
139 cd02954 DIM1 Dim1 family; Dim1 92.1 0.6 1.3E-05 35.1 6.3 58 87-144 17-81 (114)
140 cd02994 PDI_a_TMX PDIa family, 92.0 1.7 3.7E-05 30.8 8.4 56 87-142 19-82 (101)
141 TIGR02187 GlrX_arch Glutaredox 92.0 0.63 1.4E-05 38.4 6.9 74 85-158 20-111 (215)
142 cd02950 TxlA TRX-like protein 91.9 2.2 4.7E-05 33.0 9.4 74 87-160 23-112 (142)
143 PTZ00051 thioredoxin; Provisio 91.6 1.3 2.7E-05 31.2 7.3 59 86-144 20-84 (98)
144 cd02959 ERp19 Endoplasmic reti 91.6 0.74 1.6E-05 34.4 6.3 59 87-145 22-91 (117)
145 PTZ00443 Thioredoxin domain-co 91.2 4.4 9.5E-05 34.0 11.2 75 87-161 55-142 (224)
146 cd02948 TRX_NDPK TRX domain, T 91.0 2.2 4.7E-05 30.7 8.2 58 87-144 20-84 (102)
147 COG0435 ECM4 Predicted glutath 90.8 1.1 2.4E-05 39.0 7.1 94 84-179 48-182 (324)
148 PHA02278 thioredoxin-like prot 90.7 1.7 3.6E-05 31.9 7.3 59 86-144 16-85 (103)
149 cd02956 ybbN ybbN protein fami 90.3 2.1 4.6E-05 29.9 7.4 57 87-143 15-78 (96)
150 KOG0190 Protein disulfide isom 89.9 1.5 3.3E-05 41.0 7.9 75 88-162 46-136 (493)
151 cd02996 PDI_a_ERp44 PDIa famil 89.7 1.5 3.3E-05 31.6 6.4 56 87-142 21-89 (108)
152 cd02955 SSP411 TRX domain, SSP 89.7 1.4 3E-05 33.5 6.3 60 88-147 19-97 (124)
153 cd02951 SoxW SoxW family; SoxW 89.4 1.8 3.9E-05 32.1 6.7 20 86-105 16-35 (125)
154 cd02953 DsbDgamma DsbD gamma f 89.1 1.6 3.4E-05 31.2 6.0 54 86-139 13-78 (104)
155 COG3019 Predicted metal-bindin 88.7 2.6 5.6E-05 32.9 7.1 75 85-159 25-105 (149)
156 PF06110 DUF953: Eukaryotic pr 88.6 0.83 1.8E-05 34.6 4.4 58 93-150 35-108 (119)
157 cd02962 TMX2 TMX2 family; comp 88.4 2.6 5.6E-05 33.2 7.2 58 88-145 51-122 (152)
158 COG3011 Predicted thiol-disulf 88.3 4 8.6E-05 31.8 8.0 75 84-158 6-87 (137)
159 cd03003 PDI_a_ERdj5_N PDIa fam 88.0 2.7 5.9E-05 29.8 6.7 56 87-142 21-83 (101)
160 cd03004 PDI_a_ERdj5_C PDIa fam 87.7 1.8 3.8E-05 30.9 5.5 54 86-139 21-79 (104)
161 COG5494 Predicted thioredoxin/ 87.4 1.8 3.9E-05 36.2 5.9 73 85-157 10-87 (265)
162 cd02957 Phd_like Phosducin (Ph 87.3 1.9 4E-05 31.7 5.6 58 87-145 27-90 (113)
163 cd03000 PDI_a_TMX3 PDIa family 87.0 4.8 0.0001 28.7 7.6 53 87-139 18-78 (104)
164 PHA03075 glutaredoxin-like pro 86.3 1.1 2.3E-05 33.9 3.7 36 85-120 2-37 (123)
165 COG3118 Thioredoxin domain-con 86.2 4.4 9.5E-05 35.5 7.9 75 86-160 45-132 (304)
166 cd02965 HyaE HyaE family; HyaE 85.9 1.8 3.8E-05 32.4 4.8 62 85-146 28-98 (111)
167 cd02985 TRX_CDSP32 TRX family, 85.9 5.1 0.00011 28.8 7.2 58 87-144 18-84 (103)
168 cd02997 PDI_a_PDIR PDIa family 85.3 5 0.00011 28.1 6.8 58 86-143 19-87 (104)
169 cd02952 TRP14_like Human TRX-r 84.7 5.6 0.00012 30.0 7.0 61 87-147 24-106 (119)
170 PTZ00102 disulphide isomerase; 84.1 7.9 0.00017 35.3 9.2 76 86-161 51-141 (477)
171 TIGR01126 pdi_dom protein disu 84.0 4 8.7E-05 28.4 5.8 54 86-139 15-75 (102)
172 KOG2501 Thioredoxin, nucleored 83.9 4.5 9.7E-05 32.2 6.4 37 85-121 33-77 (157)
173 KOG0910 Thioredoxin-like prote 83.7 3.8 8.3E-05 32.3 5.9 59 86-144 63-128 (150)
174 cd03005 PDI_a_ERp46 PDIa famil 83.2 5.1 0.00011 28.0 6.1 56 87-142 19-84 (102)
175 cd02993 PDI_a_APS_reductase PD 82.6 4.8 0.0001 29.2 5.9 54 86-139 23-84 (109)
176 cd02961 PDI_a_family Protein D 82.3 7.9 0.00017 26.4 6.7 54 86-139 17-77 (101)
177 TIGR01130 ER_PDI_fam protein d 82.1 9.6 0.00021 34.3 8.8 75 87-161 21-112 (462)
178 cd03002 PDI_a_MPD1_like PDI fa 81.4 4.9 0.00011 28.6 5.5 53 87-139 21-80 (109)
179 cd02987 Phd_like_Phd Phosducin 81.3 6.7 0.00014 31.5 6.7 58 87-145 86-149 (175)
180 cd02995 PDI_a_PDI_a'_C PDIa fa 80.0 8.6 0.00019 26.8 6.3 54 86-139 20-79 (104)
181 cd03006 PDI_a_EFP1_N PDIa fami 79.7 6.5 0.00014 29.2 5.8 56 87-142 32-95 (113)
182 cd02999 PDI_a_ERp44_like PDIa 79.5 10 0.00023 27.1 6.7 53 87-139 21-78 (100)
183 cd03065 PDI_b_Calsequestrin_N 79.1 12 0.00026 28.2 7.1 67 88-156 31-117 (120)
184 PF13098 Thioredoxin_2: Thiore 78.5 2.6 5.6E-05 30.3 3.2 35 86-120 7-48 (112)
185 PRK11657 dsbG disulfide isomer 77.2 3.9 8.4E-05 34.8 4.3 24 85-108 118-141 (251)
186 PF09635 MetRS-N: MetRS-N bind 76.6 1.9 4.2E-05 32.8 2.0 32 129-160 31-64 (122)
187 cd03001 PDI_a_P5 PDIa family, 75.4 15 0.00033 25.6 6.5 53 87-139 21-78 (103)
188 cd03020 DsbA_DsbC_DsbG DsbA fa 75.2 4.8 0.0001 32.5 4.2 34 85-118 78-113 (197)
189 PRK10877 protein disulfide iso 75.1 4.8 0.0001 33.8 4.3 25 85-109 108-132 (232)
190 PF14595 Thioredoxin_9: Thiore 75.1 5 0.00011 30.6 4.0 53 85-139 42-103 (129)
191 PF04134 DUF393: Protein of un 74.4 14 0.00031 26.8 6.3 67 90-157 1-77 (114)
192 KOG0907 Thioredoxin [Posttrans 73.7 15 0.00033 27.0 6.2 55 88-144 25-87 (106)
193 cd02998 PDI_a_ERp38 PDIa famil 73.3 10 0.00022 26.4 5.2 54 86-139 20-81 (105)
194 TIGR00385 dsbE periplasmic pro 72.9 17 0.00036 28.7 6.8 33 87-119 66-99 (173)
195 PLN02309 5'-adenylylsulfate re 70.4 24 0.00053 32.8 8.1 53 87-139 368-428 (457)
196 TIGR00424 APS_reduc 5'-adenyly 70.1 21 0.00046 33.3 7.7 53 87-139 374-434 (463)
197 PF13728 TraF: F plasmid trans 69.8 18 0.0004 30.0 6.6 54 86-139 122-189 (215)
198 cd02988 Phd_like_VIAF Phosduci 67.8 9.4 0.0002 31.2 4.4 55 88-144 106-165 (192)
199 cd02986 DLP Dim1 family, Dim1- 66.5 17 0.00038 27.3 5.2 57 88-144 18-81 (114)
200 PRK13728 conjugal transfer pro 66.0 11 0.00024 30.7 4.3 32 88-119 73-108 (181)
201 cd02972 DsbA_family DsbA famil 64.9 7.8 0.00017 26.2 3.0 22 88-109 1-22 (98)
202 KOG3425 Uncharacterized conser 64.6 7.1 0.00015 29.8 2.8 64 93-156 42-121 (128)
203 PF01323 DSBA: DSBA-like thior 64.6 12 0.00025 29.5 4.3 34 87-120 1-39 (193)
204 COG2761 FrnE Predicted dithiol 63.9 14 0.00031 31.1 4.8 29 85-113 5-37 (225)
205 cd03009 TryX_like_TryX_NRX Try 63.2 31 0.00067 25.4 6.2 21 87-107 21-41 (131)
206 cd02970 PRX_like2 Peroxiredoxi 62.2 15 0.00032 27.4 4.3 49 93-141 33-89 (149)
207 PLN00410 U5 snRNP protein, DIM 62.0 21 0.00046 27.8 5.1 56 87-142 26-89 (142)
208 PRK00293 dipZ thiol:disulfide 61.5 49 0.0011 31.6 8.5 55 88-143 478-547 (571)
209 cd03023 DsbA_Com1_like DsbA fa 60.2 12 0.00025 28.1 3.4 24 85-108 6-29 (154)
210 PTZ00062 glutaredoxin; Provisi 59.8 70 0.0015 26.4 8.1 67 87-160 20-96 (204)
211 cd02960 AGR Anterior Gradient 58.1 22 0.00048 27.3 4.6 57 87-144 26-93 (130)
212 cd03189 GST_C_GTT1_like GST_C 57.6 7 0.00015 28.3 1.7 26 164-189 2-28 (119)
213 TIGR02740 TraF-like TraF-like 57.5 42 0.0009 28.9 6.7 53 87-139 169-235 (271)
214 cd03196 GST_C_5 GST_C family, 56.6 6.1 0.00013 29.0 1.2 30 165-194 2-32 (115)
215 cd02992 PDI_a_QSOX PDIa family 55.1 43 0.00092 24.5 5.6 54 86-139 21-84 (114)
216 PTZ00102 disulphide isomerase; 54.4 50 0.0011 30.1 7.1 73 87-159 378-466 (477)
217 PF03190 Thioredox_DsbH: Prote 53.4 27 0.00058 28.0 4.5 59 88-146 41-118 (163)
218 cd03019 DsbA_DsbA DsbA family, 51.9 17 0.00038 28.1 3.2 23 85-107 16-38 (178)
219 PF09413 DUF2007: Domain of un 51.5 19 0.00041 23.7 2.9 63 88-152 1-63 (67)
220 cd03022 DsbA_HCCA_Iso DsbA fam 50.9 23 0.00049 27.8 3.8 31 88-118 1-35 (192)
221 cd03021 DsbA_GSTK DsbA family, 50.9 29 0.00062 28.2 4.5 32 87-118 2-37 (209)
222 cd01976 Nitrogenase_MoFe_alpha 50.3 1.4E+02 0.003 27.3 9.2 92 84-179 171-263 (421)
223 PF13462 Thioredoxin_4: Thiore 49.8 22 0.00047 27.0 3.4 22 85-106 13-34 (162)
224 cd02982 PDI_b'_family Protein 48.7 40 0.00087 23.4 4.5 54 86-139 14-74 (103)
225 cd02966 TlpA_like_family TlpA- 48.1 49 0.0011 22.6 4.9 23 87-109 22-44 (116)
226 PF06953 ArsD: Arsenical resis 46.9 89 0.0019 23.7 6.3 58 87-144 3-83 (123)
227 KOG4023 Uncharacterized conser 46.5 65 0.0014 23.8 5.1 67 88-154 4-87 (108)
228 PF08534 Redoxin: Redoxin; In 46.4 43 0.00093 25.1 4.6 20 88-107 32-52 (146)
229 cd02964 TryX_like_family Trypa 46.3 1.1E+02 0.0023 22.6 6.8 20 88-107 21-40 (132)
230 CHL00076 chlB photochlorophyll 46.0 1.8E+02 0.0039 27.4 9.5 92 84-179 162-258 (513)
231 cd02967 mauD Methylamine utili 46.0 48 0.001 23.5 4.6 22 87-108 24-45 (114)
232 PRK13703 conjugal pilus assemb 45.0 81 0.0017 27.0 6.4 54 86-139 145-212 (248)
233 PF00578 AhpC-TSA: AhpC/TSA fa 44.3 38 0.00082 24.3 3.9 47 95-141 37-91 (124)
234 TIGR02681 phage_pRha phage reg 44.0 25 0.00055 26.0 2.8 26 134-159 2-28 (108)
235 TIGR01130 ER_PDI_fam protein d 44.0 1.1E+02 0.0024 27.4 7.6 71 87-158 367-454 (462)
236 PRK03147 thiol-disulfide oxido 42.4 1.5E+02 0.0033 22.6 9.0 20 87-106 64-83 (173)
237 cd03025 DsbA_FrnE_like DsbA fa 41.3 39 0.00084 26.5 3.8 31 87-117 2-38 (193)
238 PRK14478 nitrogenase molybdenu 40.9 2.1E+02 0.0046 26.6 9.1 92 84-179 190-282 (475)
239 cd03024 DsbA_FrnE DsbA family, 40.1 33 0.00072 27.2 3.2 31 88-118 1-39 (201)
240 TIGR02738 TrbB type-F conjugat 39.9 65 0.0014 25.2 4.8 34 86-119 52-89 (153)
241 PRK15412 thiol:disulfide inter 39.1 76 0.0017 25.2 5.2 32 88-119 72-104 (185)
242 TIGR01282 nifD nitrogenase mol 38.3 2.6E+02 0.0055 26.0 9.1 91 85-179 207-298 (466)
243 TIGR01764 excise DNA binding d 37.2 61 0.0013 19.0 3.4 27 130-156 23-49 (49)
244 cd03008 TryX_like_RdCVF Trypar 36.1 90 0.002 24.3 5.0 21 88-108 29-49 (146)
245 cd03191 GST_C_Zeta GST_C famil 35.8 29 0.00063 25.1 2.1 25 167-191 1-26 (121)
246 PRK09266 hypothetical protein; 35.7 58 0.0013 27.5 4.2 61 101-161 196-261 (266)
247 cd03182 GST_C_GTT2_like GST_C 35.6 19 0.00041 25.8 1.0 26 166-191 1-27 (117)
248 PF13899 Thioredoxin_7: Thiore 35.4 36 0.00078 23.1 2.4 52 87-139 20-79 (82)
249 KOG0912 Thiol-disulfide isomer 34.5 1.3E+02 0.0028 26.9 6.1 74 86-159 13-107 (375)
250 KOG0191 Thioredoxin/protein di 34.0 2.3E+02 0.0051 25.2 8.0 76 85-160 163-254 (383)
251 cd03012 TlpA_like_DipZ_like Tl 33.8 97 0.0021 22.6 4.7 21 88-108 27-47 (126)
252 TIGR01284 alt_nitrog_alph nitr 33.2 3.4E+02 0.0074 25.1 9.1 92 84-179 198-290 (457)
253 cd01968 Nitrogenase_NifE_I Nit 32.7 3.7E+02 0.0079 24.3 9.1 91 85-179 158-249 (410)
254 cd04911 ACT_AKiii-YclM-BS_1 AC 32.1 48 0.001 23.0 2.5 23 96-118 15-37 (76)
255 cd01967 Nitrogenase_MoFe_alpha 32.0 3.7E+02 0.0081 24.0 9.4 92 84-179 159-251 (406)
256 KOG0026 Anthranilate synthase, 32.0 1.4E+02 0.0031 24.3 5.4 47 84-131 17-65 (223)
257 TIGR02739 TraF type-F conjugat 31.7 73 0.0016 27.3 4.1 54 86-139 152-219 (256)
258 TIGR01283 nifE nitrogenase mol 31.4 4.2E+02 0.009 24.4 9.5 92 84-179 196-288 (456)
259 TIGR01860 VNFD nitrogenase van 30.6 4.4E+02 0.0096 24.4 9.7 92 84-179 200-292 (461)
260 KOG4277 Uncharacterized conser 29.7 1E+02 0.0022 27.5 4.7 72 88-159 47-133 (468)
261 cd03007 PDI_a_ERp29_N PDIa fam 29.6 2.4E+02 0.0052 21.1 6.9 71 87-157 21-115 (116)
262 COG0526 TrxA Thiol-disulfide i 29.4 52 0.0011 22.0 2.4 19 92-110 40-58 (127)
263 cd03188 GST_C_Beta GST_C famil 29.2 35 0.00076 24.0 1.5 23 169-191 2-25 (114)
264 TIGR01862 N2-ase-Ialpha nitrog 28.9 4.6E+02 0.01 24.1 10.6 92 84-179 190-282 (443)
265 cd02971 PRX_family Peroxiredox 28.5 1.2E+02 0.0026 22.2 4.4 53 86-140 23-88 (140)
266 cd03018 PRX_AhpE_like Peroxire 28.5 1.3E+02 0.0027 22.4 4.7 15 93-107 38-52 (149)
267 cd03178 GST_C_Ure2p_like GST_C 28.2 47 0.001 23.4 2.1 22 169-190 1-23 (113)
268 PF12728 HTH_17: Helix-turn-he 27.8 1.1E+02 0.0024 18.6 3.5 30 128-157 21-50 (51)
269 cd05295 MDH_like Malate dehydr 27.1 1.3E+02 0.0028 28.1 5.1 69 94-162 2-89 (452)
270 TIGR02014 BchZ chlorophyllide 26.9 5.3E+02 0.011 24.1 10.2 71 84-162 151-226 (468)
271 COG4837 Uncharacterized protei 26.3 2.6E+02 0.0056 20.5 5.5 62 87-148 6-89 (106)
272 cd03017 PRX_BCP Peroxiredoxin 25.5 1.2E+02 0.0026 22.2 4.0 53 86-141 24-89 (140)
273 cd05565 PTS_IIB_lactose PTS_II 25.2 1.7E+02 0.0037 21.2 4.5 21 98-118 16-36 (99)
274 cd03200 GST_C_JTV1 GST_C famil 24.8 58 0.0013 23.0 2.0 30 151-182 1-31 (96)
275 TIGR01278 DPOR_BchB light-inde 24.7 5.9E+02 0.013 23.9 10.8 90 84-179 157-253 (511)
276 KOG0190 Protein disulfide isom 24.4 41 0.00089 31.7 1.4 30 86-115 386-415 (493)
277 PF06053 DUF929: Domain of unk 24.3 55 0.0012 28.0 2.0 22 88-109 62-83 (249)
278 TIGR01162 purE phosphoribosyla 24.3 1.1E+02 0.0025 24.2 3.7 27 94-120 9-35 (156)
279 cd03011 TlpA_like_ScsD_MtbDsbE 24.2 73 0.0016 22.8 2.5 23 86-108 22-44 (123)
280 PF00731 AIRC: AIR carboxylase 24.1 95 0.0021 24.5 3.2 28 95-122 12-39 (150)
281 TIGR01861 ANFD nitrogenase iro 24.1 5.8E+02 0.013 24.1 9.0 91 85-179 202-293 (513)
282 PF00148 Oxidored_nitro: Nitro 23.7 3.5E+02 0.0076 24.0 7.3 97 83-184 142-243 (398)
283 cd03015 PRX_Typ2cys Peroxiredo 23.5 1.1E+02 0.0025 23.7 3.7 21 86-106 30-52 (173)
284 cd03180 GST_C_2 GST_C family, 23.2 84 0.0018 21.8 2.6 22 169-190 2-24 (110)
285 PTZ00056 glutathione peroxidas 23.0 2.7E+02 0.0058 22.5 5.9 19 88-106 43-61 (199)
286 cd03008 TryX_like_RdCVF Trypar 22.9 3.6E+02 0.0079 20.8 7.2 58 87-144 65-126 (146)
287 PF04564 U-box: U-box domain; 22.8 1.7E+02 0.0036 19.6 3.9 24 133-157 15-38 (73)
288 PF11734 TilS_C: TilS substrat 22.3 38 0.00083 22.9 0.6 32 98-144 19-50 (74)
289 COG5515 Uncharacterized conser 22.2 82 0.0018 21.1 2.1 22 87-108 2-27 (70)
290 PRK09437 bcp thioredoxin-depen 21.6 2.4E+02 0.0052 21.2 5.1 50 87-139 32-94 (154)
291 PF11823 DUF3343: Protein of u 21.5 1.6E+02 0.0035 19.7 3.6 32 89-120 4-35 (73)
292 PF10865 DUF2703: Domain of un 21.3 2.4E+02 0.0051 21.4 4.8 42 101-144 31-72 (120)
293 cd01972 Nitrogenase_VnfE_like 20.7 6.4E+02 0.014 22.9 10.0 91 85-179 161-258 (426)
294 cd03010 TlpA_like_DsbE TlpA-li 20.3 1.2E+02 0.0025 22.0 3.0 33 87-119 28-62 (127)
No 1
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.83 E-value=8.4e-21 Score=160.32 Aligned_cols=114 Identities=54% Similarity=0.895 Sum_probs=94.4
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC--
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR-- 162 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~-- 162 (212)
+=+++||.|..||||-|||.+|...||+|++++||+..+.+++.+.+.+||+|..+|+.+.||+.|+.-|......+.
T Consensus 88 ~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~ 167 (370)
T KOG3029|consen 88 PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQD 167 (370)
T ss_pred CceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceechhHHHHHHHHHHhccCCCC
Confidence 347999999999999999999999999999999999999999999999999999989899999999987733321100
Q ss_pred -------CC------------------------C-----CcccHHHHHHHHhh-hccccchhhhhhhhhhccC
Q 028229 163 -------KA------------------------D-----SPSGDDEEKKWRGY-DLSSIHCCSIFFPLRHKGS 198 (212)
Q Consensus 163 -------lp------------------------~-----~~~~~a~v~~w~~~-d~~l~~~~~p~i~~~~~~~ 198 (212)
+| . +-+.+.+.+.|.+| |++|.++++|++|..+.++
T Consensus 168 l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~Es 240 (370)
T KOG3029|consen 168 LGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGES 240 (370)
T ss_pred HHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhH
Confidence 01 0 11234588999999 9999999999999875544
No 2
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5e-20 Score=153.54 Aligned_cols=100 Identities=27% Similarity=0.421 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHH--hhC-CCCcccEEEECCeeeecHHHHHHHHHhhcCC-
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEI--KWS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTP- 160 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el--~~~-p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~- 160 (212)
++.++||++..|||++|++++|++|||+|+++++|..+++++ ++| +.++||+|++||.+|+||..|++||++.++.
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 478999999999999999999999999999999998878773 488 7899999999999999999999999999994
Q ss_pred CC-CCCCcccHHHHHHHHhh-hcccc
Q 028229 161 KR-KADSPSGDDEEKKWRGY-DLSSI 184 (212)
Q Consensus 161 ~~-lp~~~~~~a~v~~w~~~-d~~l~ 184 (212)
+. +|.||.+|+..+.|.++ |..+.
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~ 112 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVF 112 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHH
Confidence 55 59999999999999999 87654
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.82 E-value=5.9e-20 Score=151.77 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=87.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH-HH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC-
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR- 162 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~-el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~- 162 (212)
.+++||+++.||+|++|+++|+++|++|+.+.++...++ ++ ++||.|+||+|++||..|+||.+|++||+++|+...
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 369999999999999999999999999999999876543 44 599999999999999999999999999999998655
Q ss_pred CCCCcccHHHHHHHHhh-hccc
Q 028229 163 KADSPSGDDEEKKWRGY-DLSS 183 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~-d~~l 183 (212)
+|.++.+++++++|+.+ +..+
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~ 110 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDW 110 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 48889999999999988 6544
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.80 E-value=2.8e-19 Score=148.03 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=87.6
Q ss_pred CcEEEEEeC--CChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 86 KEVVLYQYE--ACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 86 ~~v~Ly~~~--~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
++++||+.+ .||+|++|+++|+++||+|+.+.++... .+++ ++||.|+||+|++||..|+||.+|++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 578999976 6999999999999999999999998643 2444 59999999999999999999999999999999
Q ss_pred CCCC---C-CCCcccHHHHHHHHhh-hccccc
Q 028229 159 TPKR---K-ADSPSGDDEEKKWRGY-DLSSIH 185 (212)
Q Consensus 159 ~~~~---l-p~~~~~~a~v~~w~~~-d~~l~~ 185 (212)
+.+. + |.|+.+++++++|+.| +..+..
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~ 115 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMP 115 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 7543 4 8899999999999999 876653
No 5
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.1e-19 Score=140.04 Aligned_cols=115 Identities=21% Similarity=0.246 Sum_probs=99.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-----HHHh-hCCCCcccEEEECCeeeecHHHHHHHHHhhcC
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-----~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~ 159 (212)
.+.+||+|..|..++|||++|..|||+|+.+.++.... .+++ .||+++||.|++||..|.||.+|++||+++|+
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999986432 1354 89999999999999999999999999999999
Q ss_pred CCCC-CCCcccHHHHHHHHhh-hccccchhhhhhhhhhccCCC
Q 028229 160 PKRK-ADSPSGDDEEKKWRGY-DLSSIHCCSIFFPLRHKGSSM 200 (212)
Q Consensus 160 ~~~l-p~~~~~~a~v~~w~~~-d~~l~~~~~p~i~~~~~~~~~ 200 (212)
.+.+ |.|+..|+.+++.... .+.+.+.-+-.++....+...
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~ 126 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEP 126 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhccccc
Confidence 8874 9999999999999999 888888777777666555543
No 6
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=2.4e-18 Score=120.70 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=63.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHH-hhCCCCcccEEEE--CCeeeecHHHHHHHHHhhc
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el-~~~p~~~VP~L~~--~g~~i~eS~~I~~yL~~~~ 158 (212)
+++||+++.||||+||+++|.++||+|+.++++... .+++ ++||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 489999999999999999999999999999987543 3344 5899999999998 4689999999999999875
No 7
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.77 E-value=2.3e-18 Score=120.18 Aligned_cols=72 Identities=40% Similarity=0.679 Sum_probs=66.2
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 90 LYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 90 Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
||+++.||||+|++++|+++||+|+.+.+++..+ +++ ++||.++||+|++||..++||.+|++||+++|+.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999987654 344 48999999999999999999999999999999864
No 8
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.77 E-value=3e-18 Score=119.74 Aligned_cols=73 Identities=67% Similarity=1.183 Sum_probs=66.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEEC----CeeeecHHHHHHHHHhhcC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD----GEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~----g~~i~eS~~I~~yL~~~~~ 159 (212)
+++||+++.||||+|++.+|.++|++|+.+++++...++++.+|.++||+|+++ |..|+||.+|++||+++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 489999999999999999999999999999998766667788999999999975 7899999999999998753
No 9
>PLN02473 glutathione S-transferase
Probab=99.76 E-value=4.7e-18 Score=140.13 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=88.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC----ChHH-HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI----NKKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~----~~~e-l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
.++||+.+.||+|+||+++|+++|++|+.+.++.. ..++ +++||.|+||+|++||..|+||.+|++||+++++..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 47999999999999999999999999999988754 2334 458999999999999999999999999999999743
Q ss_pred --C-CCCCcccHHHHHHHHhh-hccccchhhh
Q 028229 162 --R-KADSPSGDDEEKKWRGY-DLSSIHCCSI 189 (212)
Q Consensus 162 --~-lp~~~~~~a~v~~w~~~-d~~l~~~~~p 189 (212)
. +|.++.+++++++|+.| ++.+...+.+
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~ 113 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALP 113 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3 48888999999999999 7766554433
No 10
>PRK10387 glutaredoxin 2; Provisional
Probab=99.75 E-value=7.3e-18 Score=138.33 Aligned_cols=100 Identities=22% Similarity=0.323 Sum_probs=83.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC-hHHHhhCCCCcccEE-EECCeeeecHHHHHHHHHhhcCCCCCCC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPIL-MVDGEQLVDSSAIIDQLDQKLTPKRKAD 165 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~-~~el~~~p~~~VP~L-~~~g~~i~eS~~I~~yL~~~~~~~~lp~ 165 (212)
|+||+++.||||+||+++|+++||+|+.++++... ....+.||.++||+| .+||..|+||.+|++||+++|+.+.++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~- 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT- 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-
Confidence 68999999999999999999999999999886533 224668999999999 478999999999999999999875554
Q ss_pred CcccHHHHHHHHhh-hccccchhhh
Q 028229 166 SPSGDDEEKKWRGY-DLSSIHCCSI 189 (212)
Q Consensus 166 ~~~~~a~v~~w~~~-d~~l~~~~~p 189 (212)
..+++.+++|+.| ...+...+.+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T PRK10387 80 -GKRSPAIEEWLRKVFGYLNKLLYP 103 (210)
T ss_pred -CcccHHHHHHHHHHHHHhhcchhc
Confidence 2357899999999 7766544433
No 11
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=1.1e-17 Score=120.75 Aligned_cols=84 Identities=29% Similarity=0.439 Sum_probs=73.8
Q ss_pred cccccCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH-HH-hhCCCCcccEEEEC-CeeeecHH
Q 028229 72 SVYAKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILMVD-GEQLVDSS 148 (212)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~-el-~~~p~~~VP~L~~~-g~~i~eS~ 148 (212)
..++|+++.....+++++||+++.||+|++++++|.++|++|+.+.++...++ ++ +.||.++||+|+++ |..++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~ 82 (89)
T cd03055 3 KHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESL 82 (89)
T ss_pred cccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHH
Confidence 45678877766788999999999999999999999999999999999865443 34 48999999999986 89999999
Q ss_pred HHHHHHH
Q 028229 149 AIIDQLD 155 (212)
Q Consensus 149 ~I~~yL~ 155 (212)
+|++||+
T Consensus 83 aI~~yLe 89 (89)
T cd03055 83 IICEYLD 89 (89)
T ss_pred HHHHhhC
Confidence 9999985
No 12
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-17 Score=138.11 Aligned_cols=106 Identities=21% Similarity=0.256 Sum_probs=90.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC---hHHH-hhCCCCcccEEEECCe-eeecHHHHHHHHHhhcCCC-
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKEI-KWSEYKKVPILMVDGE-QLVDSSAIIDQLDQKLTPK- 161 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~---~~el-~~~p~~~VP~L~~~g~-~i~eS~~I~~yL~~~~~~~- 161 (212)
++||+.+.||||.||+++|.++|++|+.+.++... .+++ .+||.|+||+|+++|. .|+||.+|++||+++|+.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 58999999999999999999999999999998763 3344 5999999999999665 8999999999999999987
Q ss_pred CCCCCcc---cHHHHHHHHhh-hccccchhhhhhhh
Q 028229 162 RKADSPS---GDDEEKKWRGY-DLSSIHCCSIFFPL 193 (212)
Q Consensus 162 ~lp~~~~---~~a~v~~w~~~-d~~l~~~~~p~i~~ 193 (212)
.+|.++. +++++.+|+.| +..+.+.+......
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~ 116 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRA 116 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhh
Confidence 5688875 78888899999 88877766554433
No 13
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.73 E-value=2e-17 Score=136.83 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=83.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEE-----CC--eeeecHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMV-----DG--EQLVDSSAIIDQL 154 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~-----~g--~~i~eS~~I~~yL 154 (212)
|++||+.+ +|+|++|+++|+++||+|+.+.++... .+++ ++||.|+||+|++ || ..|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999887 799999999999999999999997642 2454 5999999999997 45 4799999999999
Q ss_pred HhhcCCCCCCCCcccHHHHHHHHhh-hccccchh
Q 028229 155 DQKLTPKRKADSPSGDDEEKKWRGY-DLSSIHCC 187 (212)
Q Consensus 155 ~~~~~~~~lp~~~~~~a~v~~w~~~-d~~l~~~~ 187 (212)
+++++. ..|.++.+++++++|+.| ++.+.+.+
T Consensus 80 ~~~~~~-l~p~~~~~ra~~~~~~~~~~~~~~~~~ 112 (215)
T PRK13972 80 AEKTGL-FLSHETRERAATLQWLFWQVGGLGPML 112 (215)
T ss_pred HHhcCC-CCCCCHHHHHHHHHHHHHHhhccCcce
Confidence 999852 237788899999999999 88776543
No 14
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.73 E-value=1.7e-17 Score=114.25 Aligned_cols=71 Identities=23% Similarity=0.446 Sum_probs=64.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
|+||+.+.||+|++++++|+++|++|+.++++...+ +++ ++||.++||+|++||..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999999999986543 344 48999999999999999999999999999875
No 15
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.72 E-value=2.4e-17 Score=113.49 Aligned_cols=69 Identities=32% Similarity=0.586 Sum_probs=61.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHHhhCCCCcccEEEEC-CeeeecHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el~~~p~~~VP~L~~~-g~~i~eS~~I~~yL~~ 156 (212)
++||+++.||||+|+|++|.++|++|+.+.++.... ..++.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 579999999999999999999999999999886533 23568999999999985 8999999999999975
No 16
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.71 E-value=6.5e-17 Score=112.18 Aligned_cols=71 Identities=30% Similarity=0.463 Sum_probs=63.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHH-hhCCC-CcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEY-KKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el-~~~p~-~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
|+||+++.||+|+|++++|+++|++|+.+.++...+ +++ ++||. ++||+|+++|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 589999999999999999999999999999886543 344 58995 999999999999999999999999864
No 17
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.70 E-value=4.3e-17 Score=133.24 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=84.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH-HH-hhCCCCcccEEE-ECCeeeecHHHHHHHHHhhcCCCC-C
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKR-K 163 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~-el-~~~p~~~VP~L~-~~g~~i~eS~~I~~yL~~~~~~~~-l 163 (212)
++||++..||++++|+++|+++|++|+.+.++....+ ++ ++||.|+||+|+ +||..|+||.+|++||+++++... +
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999999999999988865433 33 489999999998 588999999999999999987654 4
Q ss_pred CCCcccHHHHHHHHhh-hccccc
Q 028229 164 ADSPSGDDEEKKWRGY-DLSSIH 185 (212)
Q Consensus 164 p~~~~~~a~v~~w~~~-d~~l~~ 185 (212)
|.++.+++++++|..| ++.+..
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~ 103 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDA 103 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999 765543
No 18
>PLN02395 glutathione S-transferase
Probab=99.70 E-value=1.5e-16 Score=131.17 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=85.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC----ChHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI----NKKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~----~~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
.++||+.+.| +++|++++|.++|++|+.+.++.. ..+++ ++||.|+||+|+++|..|+||.+|++||+++++..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 4799997665 699999999999999999998763 23454 59999999999999999999999999999999742
Q ss_pred ---CCCCCcccHHHHHHHHhh-hccccchhhh
Q 028229 162 ---RKADSPSGDDEEKKWRGY-DLSSIHCCSI 189 (212)
Q Consensus 162 ---~lp~~~~~~a~v~~w~~~-d~~l~~~~~p 189 (212)
.+|.|+.+++++++|+.| +..+.+.+..
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLN 112 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHH
Confidence 358899999999999999 8776654433
No 19
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.70 E-value=8.8e-17 Score=111.11 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=61.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
++||+++.||+|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999997532 2444 499999999999999999999999999974
No 20
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.70 E-value=7.8e-17 Score=116.87 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=62.8
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHH--HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 93 ~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~e--l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
...||||+++|++|.+|||+|+.+.+|+..+++ +++||.|+||+|+++|..|+||.+|++||++++.+.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 356999999999999999999999999877665 358999999999999999999999999999999864
No 21
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.70 E-value=7.9e-17 Score=112.14 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=60.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC---C-hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---N-KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~---~-~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
++||+++.||+|++|+++|+++|++|+.+.++.. . .+++ ++||.++||+|++||..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998753 2 2344 59999999999999999999999999985
No 22
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.69 E-value=9.9e-17 Score=132.66 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=80.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC-hHHHhhCCCCcccEEE-ECCeeeecHHHHHHHHHhhcCCCCCCCC
Q 028229 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRKADS 166 (212)
Q Consensus 89 ~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~-~~el~~~p~~~VP~L~-~~g~~i~eS~~I~~yL~~~~~~~~lp~~ 166 (212)
+||++..||||+||+++|.++|++|+.+.++... ...++.||.++||+|+ +||..|+||.+|++||+++|+.+.++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~-- 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT-- 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC--
Confidence 5899999999999999999999999998875432 2346799999999998 79999999999999999999765443
Q ss_pred cccHHHHHHHHhh-hccccchhh
Q 028229 167 PSGDDEEKKWRGY-DLSSIHCCS 188 (212)
Q Consensus 167 ~~~~a~v~~w~~~-d~~l~~~~~ 188 (212)
+.++.++++|+.+ +..+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~ 101 (209)
T TIGR02182 79 GKVSPEIEAWLRKVTGYANKLLL 101 (209)
T ss_pred CCChHHHHHHHHHHHHHhhhhhc
Confidence 2357889999988 776644443
No 23
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.69 E-value=1e-16 Score=131.55 Aligned_cols=97 Identities=25% Similarity=0.282 Sum_probs=84.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC-----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 89 ~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~-----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
+||++..||+|++++++|.++||+|+.+.++... .+++ ++||.++||+|++||..|+||.+|++||+++++...
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999888521 2344 489999999999999999999999999999998755
Q ss_pred C-CCCcccHHHHHHHHhh-hccccc
Q 028229 163 K-ADSPSGDDEEKKWRGY-DLSSIH 185 (212)
Q Consensus 163 l-p~~~~~~a~v~~w~~~-d~~l~~ 185 (212)
+ |.++.+++++++|+.+ ++.+..
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~ 105 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHP 105 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccCh
Confidence 4 8889999999999999 766553
No 24
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.68 E-value=1.7e-16 Score=109.33 Aligned_cols=66 Identities=27% Similarity=0.466 Sum_probs=59.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHH-hhCCCCcccEEEE-CCeeeecHHHHHHHH
Q 028229 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQL 154 (212)
Q Consensus 89 ~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el-~~~p~~~VP~L~~-~g~~i~eS~~I~~yL 154 (212)
+||+++.||||+|++++|+++|++|+.+.++...+ +++ ++||.++||+|++ ||..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 79999999999999999999999999999987543 344 5899999999998 499999999999996
No 25
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.68 E-value=2.4e-16 Score=109.94 Aligned_cols=68 Identities=38% Similarity=0.634 Sum_probs=62.1
Q ss_pred cEEEEEeC-------CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcC
Q 028229 87 EVVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 87 ~v~Ly~~~-------~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~ 159 (212)
+++||+++ .||+|.||+++|+++|++|+.+.++.. +++|.++||+|++||+.+.||.+|++||+++|+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----KRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----cCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 47999998 579999999999999999999988742 579999999999999999999999999999875
No 26
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.67 E-value=2.5e-16 Score=128.39 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=82.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-----HHH-hhCCCCcccEEEE-CCeeeecHHHHHHHHHhhcCC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTP 160 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-----~el-~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~~~~~~ 160 (212)
|+||+.+.+ ++.+++++|+++||+|+.+.++...+ +++ ++||.|+||+|++ ||..|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 579998855 79999999999999999998876422 344 5999999999985 889999999999999999986
Q ss_pred CC-C-CCCcccHHHHHHHHhh-hccccchh
Q 028229 161 KR-K-ADSPSGDDEEKKWRGY-DLSSIHCC 187 (212)
Q Consensus 161 ~~-l-p~~~~~~a~v~~w~~~-d~~l~~~~ 187 (212)
.. + |.++.+++++++|+.| +..+...+
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~ 109 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGF 109 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhh
Confidence 55 4 6678889999999999 77665433
No 27
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.66 E-value=6.1e-16 Score=107.52 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=62.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
++||+++.||+|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999999887532 2344 4899999999999999999999999999863
No 28
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.65 E-value=8.4e-16 Score=108.37 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=63.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC----ChHHH-hhCCCCcccEEEEC---CeeeecHHHHHHHHHhhc
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI----NKKEI-KWSEYKKVPILMVD---GEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~----~~~el-~~~p~~~VP~L~~~---g~~i~eS~~I~~yL~~~~ 158 (212)
+++||+++. |+|++++++|+++|++|+.+.++.. ..+++ ++||.++||+|+++ |..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 489999985 9999999999999999999998753 22344 58999999999997 899999999999999998
Q ss_pred C
Q 028229 159 T 159 (212)
Q Consensus 159 ~ 159 (212)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 29
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.65 E-value=7e-16 Score=107.48 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=63.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
++||+++.|++|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999987532 2344 48999999999999999999999999999875
No 30
>PRK11752 putative S-transferase; Provisional
Probab=99.65 E-value=7.9e-16 Score=131.83 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEeCCCC----hHHH-hhCCCCcccEEEEC----CeeeecHH
Q 028229 84 VPKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVD----GEQLVDSS 148 (212)
Q Consensus 84 ~~~~v~Ly~~~~sp~c~kvr~~L~~~------gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~----g~~i~eS~ 148 (212)
..++++||+.+ ||+|+||+++|+|+ |++|+.+.++... .+++ ++||.|+||+|+++ |..|+||.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 34579999976 99999999999997 8999999887643 2344 59999999999984 36899999
Q ss_pred HHHHHHHhhcCCCCCCCCcccHHHHHHHHhh-hcc
Q 028229 149 AIIDQLDQKLTPKRKADSPSGDDEEKKWRGY-DLS 182 (212)
Q Consensus 149 ~I~~yL~~~~~~~~lp~~~~~~a~v~~w~~~-d~~ 182 (212)
+|++||+++++. .+|.++.+++++++|+.| +..
T Consensus 120 AIl~YL~~~~~~-L~P~~~~era~v~~wl~~~~~~ 153 (264)
T PRK11752 120 AILLYLAEKFGA-FLPKDLAARTETLNWLFWQQGS 153 (264)
T ss_pred HHHHHHHHhcCC-cCCCCHHHHHHHHHHHHHHhhh
Confidence 999999999973 358889999999999999 765
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=6.3e-16 Score=106.16 Aligned_cols=68 Identities=34% Similarity=0.557 Sum_probs=60.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
++||+++.||+|++++++|+++|++|+.+.++... .+++ ++||.+++|+|+++|..|.||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999987532 2344 58999999999999999999999999984
No 32
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.64 E-value=6.4e-16 Score=106.16 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=59.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEE-CCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~ 155 (212)
++||+++.||+|+|++++|+++|++|+.+.++... .+++ ++||.++||+|++ ||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999987532 2344 5899999999996 7889999999999985
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.64 E-value=7e-16 Score=107.07 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=62.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
.++||+++.|++|++++++|+++|++|+.+.++.... +++ ++||.++||+|++||..++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 3799999999999999999999999999999975322 234 4899999999999999999999999999763
No 34
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.62 E-value=1.1e-15 Score=105.34 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=61.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH--HH-hhCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~--el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
++||+++.|++|++++++|+++|++|+.+.++..... ++ +.||.++||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999999864322 23 489999999999999999999999999964
No 35
>PLN02378 glutathione S-transferase DHAR1
Probab=99.61 E-value=2.3e-15 Score=124.78 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=69.8
Q ss_pred EeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHH--HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCCCCCccc
Q 028229 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSG 169 (212)
Q Consensus 92 ~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~e--l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~lp~~~~~ 169 (212)
.+..||||+||+++|+++|++|+.+.+|...+++ +++||.|+||+|++||..|+||.+|++||+++|+...+ .++.+
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l-~~~~~ 94 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL-KTPAE 94 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC-CCHHH
Confidence 4455999999999999999999999998765543 45999999999999999999999999999999986544 34555
Q ss_pred HHHHHHH
Q 028229 170 DDEEKKW 176 (212)
Q Consensus 170 ~a~v~~w 176 (212)
++.+..+
T Consensus 95 ~a~i~~~ 101 (213)
T PLN02378 95 FASVGSN 101 (213)
T ss_pred HHHHHHH
Confidence 6665544
No 36
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.3e-15 Score=126.36 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=88.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC----ChHH-HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcC-C
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI----NKKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT-P 160 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~----~~~e-l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~-~ 160 (212)
+++||+++.+|.|++|.++++++|++|+.+.++.. ..++ +++||.++||+|+|+|..++||.+|+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999988753 2344 4599999999999999999999999999999997 2
Q ss_pred CC--CCCCcccHHHHHHHHhh-hccccchh
Q 028229 161 KR--KADSPSGDDEEKKWRGY-DLSSIHCC 187 (212)
Q Consensus 161 ~~--lp~~~~~~a~v~~w~~~-d~~l~~~~ 187 (212)
.. +|.|+.+++.+.+|+.| ++.|.+..
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~ 111 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVT 111 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhccccccc
Confidence 22 48899999999999999 88887763
No 37
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.61 E-value=1.8e-15 Score=104.46 Aligned_cols=68 Identities=29% Similarity=0.436 Sum_probs=60.4
Q ss_pred EEEEEeCCChhHHHHHHHHHh--cCCCcEEEEeCCCC-hHHH-hhCCCCcccEEEE-CCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDY--YDIPYKVVEVNPIN-KKEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~--~gi~y~~v~v~~~~-~~el-~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~ 155 (212)
++||+++.||+|++++++|.+ +|++|+.+.++... .+++ ++||.++||+|++ ||..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 89999999998644 3444 5899999999985 8899999999999985
No 38
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.61 E-value=4e-15 Score=103.81 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=61.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEEC-CeeeecHHHHHHHHHhhcC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~-g~~i~eS~~I~~yL~~~~~ 159 (212)
++||+++.| +|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++ |..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 479999976 5999999999999999999987643 3444 48999999999986 8999999999999999875
No 39
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.61 E-value=2.7e-15 Score=106.67 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=57.9
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeCCCChH----HHhhCCCCcccEEEEC-CeeeecHHHHHHHHHhhcC
Q 028229 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKK----EIKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 94 ~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~----el~~~p~~~VP~L~~~-g~~i~eS~~I~~yL~~~~~ 159 (212)
+.||||+|++++|.++|++|+.+.++....+ ++++||.++||+|+++ |..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5699999999999999999999998754332 2357999999999998 9999999999999999874
No 40
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.60 E-value=4.6e-15 Score=101.94 Aligned_cols=68 Identities=31% Similarity=0.436 Sum_probs=60.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC----ChHHH-hhCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI----NKKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~----~~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
++||++..|++|++++++|+++|++|+.+.++.. ..+++ +.||.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998753 22344 48999999999999999999999999985
No 41
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.60 E-value=5.5e-15 Score=102.23 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=60.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
++||+++.||+|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 47999999999999999999999999999887432 2344 58999999999999999999999999984
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.59 E-value=5.2e-15 Score=103.04 Aligned_cols=68 Identities=29% Similarity=0.360 Sum_probs=60.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC---ChHHH-hhCCCCcccEEEE-CCeeeecHHHHHHHHHh
Q 028229 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---NKKEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 89 ~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~---~~~el-~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~~ 156 (212)
+||+++.||+|.+++++|+++|++|+.+.++.. ..+++ ++||.++||+|++ ||..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 699999999999999999999999999999864 23344 4899999999997 58999999999999975
No 43
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.59 E-value=8.5e-15 Score=101.50 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=62.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC----ChHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHhhcC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI----NKKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~----~~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~ 159 (212)
++||+++. ++|++++++|+++|++|+.+.++.. ..+++ ++||.++||+|+++|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47999886 6899999999999999999998853 23344 489999999999999999999999999999874
No 44
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.58 E-value=8.1e-15 Score=98.09 Aligned_cols=68 Identities=29% Similarity=0.444 Sum_probs=60.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH--HH-hhCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~--el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
++||+++.||+|++++++|+++|++|+.+.++..... ++ +.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999754322 24 37999999999999999999999999984
No 45
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.57 E-value=1e-14 Score=125.16 Aligned_cols=85 Identities=28% Similarity=0.426 Sum_probs=72.4
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHH--HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCCCCCcccH
Q 028229 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGD 170 (212)
Q Consensus 93 ~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~e--l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~lp~~~~~~ 170 (212)
...||||+|++++|+++|++|+.+.++...+++ +++||.|+||+|+++|..|+||.+|++||+++|+...+ .++.++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L-~~~~er 148 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPL-ATPPEK 148 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCC-CCHHHH
Confidence 344999999999999999999999998765444 45999999999999999999999999999999987654 356778
Q ss_pred HHHHHHHh
Q 028229 171 DEEKKWRG 178 (212)
Q Consensus 171 a~v~~w~~ 178 (212)
+++.+|+.
T Consensus 149 a~i~~~l~ 156 (265)
T PLN02817 149 ASVGSKIF 156 (265)
T ss_pred HHHHHHHH
Confidence 88877654
No 46
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.56 E-value=3e-14 Score=100.48 Aligned_cols=72 Identities=22% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHHh-hCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 84 ~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
.+++|+||+.++||+|.+++.+|+++|++|+.++++.... .+++ .++..+||++++||+.|+++.+|.+||.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 4678999999999999999999999999999999975433 2344 6899999999999999999999999984
No 47
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.56 E-value=1.8e-14 Score=99.43 Aligned_cols=65 Identities=38% Similarity=0.596 Sum_probs=58.3
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 88 VVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 88 v~Ly~~~-------~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
++||.++ .||+|.+++++|+++|+||+.++++... ++|.++||+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-----RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-----cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577776 7999999999999999999999987532 789999999999999999999999999874
No 48
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.55 E-value=3.4e-14 Score=100.20 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=61.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhh-----CCCCcccEEEECCeeeecHHHHHHHHHhhcC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKW-----SEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~-----~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~ 159 (212)
+++||+++.++.|++++++|+++|++|+.+.++.... ..+. .|.++||+|++||..|+||.+|++||.++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED-LEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH-HHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 3689999999999999999999999999998875221 1123 3589999999999999999999999999886
No 49
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.54 E-value=2.1e-14 Score=98.95 Aligned_cols=63 Identities=30% Similarity=0.507 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeCC----CCh-HHH-hhCCCCcccEEEE-CCeeeecHHHHHHHHHhh
Q 028229 95 ACPFCNKVKAFLDYYDIPYKVVEVNP----INK-KEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 95 ~sp~c~kvr~~L~~~gi~y~~v~v~~----~~~-~el-~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~~~ 157 (212)
.||||+|++++|+++|++|+...++. ..+ +++ ++||.++||+|++ +|..+.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988732 222 334 4999999999998 899999999999999874
No 50
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.54 E-value=3.4e-14 Score=120.03 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=62.5
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HH-HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 93 ~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~e-l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
++.||||++|+++|.++|++|+.+.+|+..+ ++ +++||.|+||+|+++|..|+||.+|++||+++|+++
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCC
Confidence 4669999999999999999999999998765 34 459999999999999999999999999999999753
No 51
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.53 E-value=4.7e-14 Score=100.25 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=60.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC-----hHHHh------hCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKEIK------WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 89 ~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~-----~~el~------~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
+||++..++.|++++++|+++|++|+.+.++... .++.. .+|.++||+|++||..++||.+|++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 7899999999999999999999999999998643 12321 229999999999999999999999999886
Q ss_pred c
Q 028229 158 L 158 (212)
Q Consensus 158 ~ 158 (212)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 52
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=113.43 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=73.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH-----HH---hhCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EI---KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~-----el---~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
++++||+++.++++.+|+++|+++|++|+.+.++..... ++ +.||.|+||+|++||..|+||.+|++||+++
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 459999999999999999999999999999977532211 11 3799999999999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHhh
Q 028229 158 LTPKRKADSPSGDDEEKKWRGY 179 (212)
Q Consensus 158 ~~~~~lp~~~~~~a~v~~w~~~ 179 (212)
++.. + ..+++++..|+.|
T Consensus 83 ~~~~--~--~~~~~~~~~~~~~ 100 (205)
T PTZ00057 83 YKIC--G--ESELNEFYADMIF 100 (205)
T ss_pred cCCC--C--CCHHHHHHHHHHH
Confidence 9732 2 2346666677666
No 53
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.47 E-value=3.4e-13 Score=93.09 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=61.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC-hHHHh-hCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~-~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
+|+||+.++||+|.+++.+|.++|++|+.++++... ..+++ .++..+||+|++||+.++++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 699999999999999999999999999999997543 23344 6789999999999999999999999984
No 54
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.47 E-value=3.9e-13 Score=94.07 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=56.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh----HHH-hhCCC-CcccEEEEC-CeeeecHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KEI-KWSEY-KKVPILMVD-GEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~----~el-~~~p~-~~VP~L~~~-g~~i~eS~~I~~yL~~ 156 (212)
++|+.|+..+++.++|++|+++|++|+.+.++.... +++ +.||. |+||+|+++ |..|+||.+|++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 345555555689999999999999999999986322 444 48999 999999998 9999999999999975
No 55
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.44 E-value=6.7e-13 Score=92.12 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=56.2
Q ss_pred EeCCChhHHHHHHHHHhcCCCcEEEEeCCCC---hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 92 ~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~---~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
+...||+|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++|..++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4567999999999999999999999987643 3445 48999999999999999999999999983
No 56
>PRK10638 glutaredoxin 3; Provisional
Probab=99.42 E-value=1.5e-12 Score=92.49 Aligned_cols=70 Identities=21% Similarity=0.509 Sum_probs=61.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHH-hhCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
+|+||+.+.||||.+++.+|+++|++|+.++++... ..++ +.+|..+||+|++||+.|++..++..+-.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 599999999999999999999999999999997643 3344 489999999999999999999999887543
No 57
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.36 E-value=5.2e-12 Score=92.99 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=63.1
Q ss_pred CCCCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-H----HHh-hCCCCcccEEEECCeeeecHHHHHHHHH
Q 028229 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-K----EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 82 ~~~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~----el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
.+.+++|++|+.++||||.+++.+|..+|++|++++++.... . ++. +++..+||+++++|+.|++.+++.....
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHI 83 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHH
Confidence 456789999999999999999999999999999999975422 1 233 6799999999999999999999888643
No 58
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.3e-12 Score=104.23 Aligned_cols=93 Identities=23% Similarity=0.381 Sum_probs=75.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHHhhCCCCcccEEEE-CCeeeecHHHHHHHHHhhcCCCCCCC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKRKAD 165 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~~~~~~~~lp~ 165 (212)
|+||-|..||||.|+|+.+..+|||++.+.+..++. ....+-+..+||+|+- +|..+.||.+|++|+++..+.+.+.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt- 79 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLT- 79 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhc-
Confidence 589999999999999999999999999987764332 2356789999999995 8999999999999999998865332
Q ss_pred CcccHHHHHHHHhh-hcc
Q 028229 166 SPSGDDEEKKWRGY-DLS 182 (212)
Q Consensus 166 ~~~~~a~v~~w~~~-d~~ 182 (212)
..-+..++.|+.- ...
T Consensus 80 -~~~~pai~~wlrkv~~y 96 (215)
T COG2999 80 -GKVRPAIEAWLRKVNGY 96 (215)
T ss_pred -cCcCHHHHHHHHHhcch
Confidence 2235678888775 443
No 59
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.35 E-value=4.2e-12 Score=87.87 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=58.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHH
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~ 152 (212)
+.|+||+.++||+|++++.+|+++||+|+.++++... +++++ ++|..++|++++||+.|++.+++.+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 3689999999999999999999999999999997532 34554 8899999999999999999998766
No 60
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-11 Score=87.74 Aligned_cols=70 Identities=21% Similarity=0.512 Sum_probs=59.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh---HH-Hh-hCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK---KE-IK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~---~e-l~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
++++|+.+.||||.+++.+|.++|++|++++++.... .+ ++ .+|..+||+|++||..++++.++.++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 5899999999999999999999999999999976542 12 34 55899999999999999998887776543
No 61
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.30 E-value=1.6e-11 Score=87.92 Aligned_cols=72 Identities=15% Similarity=0.457 Sum_probs=59.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEeCCCC--hHHHh-hCCC--CcccEEEECCeeeecHHHHHHHHHhh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYD-----IPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~g-----i~y~~v~v~~~~--~~el~-~~p~--~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
|+||+.++||||.+++.+|.+++ ++|+.++++... +.++. ..+. .+||+|++||+.|+++.+|.+++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 78999999999999999999984 678888776432 33444 4454 79999999999999999999999987
Q ss_pred cC
Q 028229 158 LT 159 (212)
Q Consensus 158 ~~ 159 (212)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 75
No 62
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.9e-11 Score=103.17 Aligned_cols=108 Identities=28% Similarity=0.465 Sum_probs=89.4
Q ss_pred CCCCCCcEEEEEeCC-------ChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHH
Q 028229 81 TDLVPKEVVLYQYEA-------CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQ 153 (212)
Q Consensus 81 ~~~~~~~v~Ly~~~~-------sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~y 153 (212)
.+...+.|-||+|+. ||||.|+..+|+..+||||.++.... ..+..|++|.++.||+.+.||+.|+.+
T Consensus 39 ~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----~rSr~G~lPFIELNGe~iaDS~~I~~~ 113 (281)
T KOG4244|consen 39 TDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----RRSRNGTLPFIELNGEHIADSDLIEDR 113 (281)
T ss_pred hccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----eeccCCCcceEEeCCeeccccHHHHHH
Confidence 455567789999976 89999999999999999999876531 368999999999999999999999999
Q ss_pred HHhhcCCCCCCCCcccHHHHHHHHhh-hccccchhhhhhhhhhcc
Q 028229 154 LDQKLTPKRKADSPSGDDEEKKWRGY-DLSSIHCCSIFFPLRHKG 197 (212)
Q Consensus 154 L~~~~~~~~lp~~~~~~a~v~~w~~~-d~~l~~~~~p~i~~~~~~ 197 (212)
|.+.++-+.. ..+.+++..+....+ |+||...+ +|+++.+
T Consensus 114 L~~hf~~~~~-L~~e~~a~s~Al~rm~dnhL~~~l---~y~k~~~ 154 (281)
T KOG4244|consen 114 LRKHFKIPDD-LSAEQRAQSRALSRMADNHLFWIL---LYYKGAD 154 (281)
T ss_pred HHHHcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH---HHhhhcc
Confidence 9999986652 457889999999999 99977654 4555433
No 63
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.29 E-value=1.4e-11 Score=90.44 Aligned_cols=73 Identities=26% Similarity=0.471 Sum_probs=62.1
Q ss_pred CCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHHHH
Q 028229 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (212)
Q Consensus 83 ~~~~~v~Ly~~-----~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL 154 (212)
+.+++|+||.. ++||||.+++.+|.++|++|+.++++... +.+++ +++..+||++++||+.|++.+++.+..
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 45689999987 88999999999999999999999985332 23454 789999999999999999999998865
Q ss_pred H
Q 028229 155 D 155 (212)
Q Consensus 155 ~ 155 (212)
+
T Consensus 89 ~ 89 (97)
T TIGR00365 89 Q 89 (97)
T ss_pred H
Confidence 4
No 64
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.28 E-value=1.4e-11 Score=85.96 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 95 ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 95 ~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
.+++|.|++++|++.|+||+.+..... -..+|.|+||+|++||+.|+||.+|+.||+++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~----~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANA----EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCc----cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 466799999999999999999854221 12678899999999999999999999999864
No 65
>PHA03050 glutaredoxin; Provisional
Probab=99.27 E-value=2.9e-11 Score=90.45 Aligned_cols=72 Identities=17% Similarity=0.455 Sum_probs=61.6
Q ss_pred CCCCCcEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEeCCC-C----hHHHh-hCCCCcccEEEECCeeeecHHHHHH
Q 028229 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPI-N----KKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (212)
Q Consensus 82 ~~~~~~v~Ly~~~~sp~c~kvr~~L~~~gi---~y~~v~v~~~-~----~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~ 152 (212)
.+..++|++|+.++||||.+++.+|+++|+ +|++++++.. . +.+++ .++..+||++++||+.|++.+++..
T Consensus 9 ~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 9 RLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred HhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 345678999999999999999999999999 8999999742 1 23354 7899999999999999999999887
Q ss_pred H
Q 028229 153 Q 153 (212)
Q Consensus 153 y 153 (212)
.
T Consensus 89 l 89 (108)
T PHA03050 89 I 89 (108)
T ss_pred H
Confidence 4
No 66
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.27 E-value=3.7e-11 Score=85.60 Aligned_cols=73 Identities=21% Similarity=0.459 Sum_probs=62.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEeCCCC--hHHHh-hCCC--CcccEEEECCeeeecHHHHHHHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~-----~gi~y~~v~v~~~~--~~el~-~~p~--~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
.|++|+.++||+|.+++.+|++ .|++|+.++++... ..++. ..+. .+||++++||+.+++..+|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 5899999999999999999999 89999999997532 33454 4443 7899999999999999999999998
Q ss_pred hcC
Q 028229 157 KLT 159 (212)
Q Consensus 157 ~~~ 159 (212)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 875
No 67
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.27 E-value=3.6e-11 Score=83.09 Aligned_cols=69 Identities=22% Similarity=0.465 Sum_probs=58.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHH-hhCCCC-cccEEEECCeeeecHHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYK-KVPILMVDGEQLVDSSAIIDQLD 155 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el-~~~p~~-~VP~L~~~g~~i~eS~~I~~yL~ 155 (212)
+|+||+.+.||+|.+++.+|+++|++|+.++++... ..++ ...+.. +||+++++|+.+++..++.++.+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 489999999999999999999999999999997541 2233 345655 99999999999999999998754
No 68
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.1e-11 Score=99.09 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=80.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC-hHHHh-hCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCCC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKA 164 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~-~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~lp 164 (212)
.++|++++..+.+.-+|++|...|++||.+.+...+ .++++ ..|.|++|+|.+||..|.+|.+|++||+++++- .+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl--~G 80 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGL--AG 80 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCc--CC
Confidence 479999999999999999999999999999998766 66777 579999999999999999999999999999983 27
Q ss_pred CCcccHHHHHHHHhh
Q 028229 165 DSPSGDDEEKKWRGY 179 (212)
Q Consensus 165 ~~~~~~a~v~~w~~~ 179 (212)
.++.|++.++...+-
T Consensus 81 kt~~E~a~vD~i~d~ 95 (206)
T KOG1695|consen 81 KTEEEEAWVDMIVDQ 95 (206)
T ss_pred CCHHHHHHHHHHHHh
Confidence 788888887777654
No 69
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.25 E-value=5.5e-11 Score=80.23 Aligned_cols=67 Identities=22% Similarity=0.565 Sum_probs=58.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQ 153 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~y 153 (212)
+|++|+.++||+|++++.+|.+++++|+.++++... ++++. +++..++|++++||..++++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 489999999999999999999999999999887543 34454 78999999999999999999998765
No 70
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.22 E-value=5.7e-11 Score=85.81 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=62.3
Q ss_pred CCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHHHH
Q 028229 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (212)
Q Consensus 83 ~~~~~v~Ly~~-----~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL 154 (212)
+..++|++|.. ++||||.+++.+|+++|++|+.++++... +.++. .++..++|++++||..|++..++.+..
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 45688999987 69999999999999999999999986432 23344 789999999999999999999998865
Q ss_pred H
Q 028229 155 D 155 (212)
Q Consensus 155 ~ 155 (212)
+
T Consensus 85 ~ 85 (90)
T cd03028 85 E 85 (90)
T ss_pred H
Confidence 4
No 71
>PRK10824 glutaredoxin-4; Provisional
Probab=99.19 E-value=7e-11 Score=89.24 Aligned_cols=75 Identities=19% Similarity=0.389 Sum_probs=63.3
Q ss_pred CCCCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHH
Q 028229 81 TDLVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (212)
Q Consensus 81 ~~~~~~~v~Ly~~-----~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~ 152 (212)
+.+..++|++|.. ++||||.+++.+|..+|++|+.++++... +..++ .+++.+||.+++||+.|++++++..
T Consensus 10 ~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 10 RQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred HHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 3456789999998 59999999999999999999999886432 23354 7899999999999999999999988
Q ss_pred HHH
Q 028229 153 QLD 155 (212)
Q Consensus 153 yL~ 155 (212)
...
T Consensus 90 l~~ 92 (115)
T PRK10824 90 MYQ 92 (115)
T ss_pred HHH
Confidence 643
No 72
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.18 E-value=1.4e-10 Score=81.28 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=60.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
|+||+.++||+|.+++.+|+++|++|+.++++... ..++. .++..++|+++++|+.+++..++.++.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 68999999999999999999999999999997542 33443 67899999999999999999999887654
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.16 E-value=1.7e-10 Score=81.85 Aligned_cols=60 Identities=10% Similarity=0.442 Sum_probs=50.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh--HHHhhCCCCcccEEEECCeeeec
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEIKWSEYKKVPILMVDGEQLVD 146 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~--~el~~~p~~~VP~L~~~g~~i~e 146 (212)
+|+||+.++||+|.+++.+|+++||+|+.++++.... .+++.+|..+||+++++|..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEec
Confidence 6899999999999999999999999999999975322 22456799999999998877654
No 74
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.12 E-value=5.4e-10 Score=78.26 Aligned_cols=70 Identities=19% Similarity=0.451 Sum_probs=61.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-----HHHh-hCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-----~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
+|++|+.++||+|.+++.+|.+.+++|+.++++.... .+++ .++..++|+++++|..+++...|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4899999999999999999999999999999876432 1243 67889999999999999999999998765
No 75
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.09 E-value=6.2e-10 Score=75.51 Aligned_cols=68 Identities=24% Similarity=0.471 Sum_probs=56.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh--HHH-hhCCCCcccEEEECCeee--ecHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWSEYKKVPILMVDGEQL--VDSSAIIDQL 154 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~--~el-~~~p~~~VP~L~~~g~~i--~eS~~I~~yL 154 (212)
+|+||+.++||+|++++.+|+++|++|+.++++.... +++ +.++...||+++++|+.+ .+...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 5899999999999999999999999999998875432 233 478999999999999887 5666666665
No 76
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.08 E-value=7e-10 Score=77.21 Aligned_cols=58 Identities=31% Similarity=0.456 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 95 ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 95 ~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
.+|+|.|+.++|+..|+||+.+..+. ...+|.|++|+|+++|+.|.||..|++||+++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-----~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-----PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-----CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 37999999999999999999875542 12578999999999999999999999999875
No 77
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.08 E-value=2.7e-10 Score=75.76 Aligned_cols=57 Identities=40% Similarity=0.809 Sum_probs=49.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC--ChHHHh-hCCCCcccEEEECCeee
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI--NKKEIK-WSEYKKVPILMVDGEQL 144 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~--~~~el~-~~p~~~VP~L~~~g~~i 144 (212)
|++|+.++||+|.+++.+|+++|++|+.++++.. .+++++ .++..++|++++||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 6899999999999999999999999999999764 234454 56999999999999875
No 78
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.07 E-value=2e-10 Score=96.80 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=67.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC---hHH--HhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~---~~e--l~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
.++||+++.|-.++|||+++.||||+|+..+|++-. ... +.+||.+.||||.++...|.|+..|++|++++|-++
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 499999999999999999999999999999998632 222 348999999999999999999999999999999766
Q ss_pred C
Q 028229 162 R 162 (212)
Q Consensus 162 ~ 162 (212)
.
T Consensus 106 r 106 (325)
T KOG4420|consen 106 R 106 (325)
T ss_pred c
Confidence 4
No 79
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.2e-09 Score=81.10 Aligned_cols=75 Identities=23% Similarity=0.479 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChH-H----H-hhCCCCcccEEEECCeeeecHHHHHHHH
Q 028229 81 TDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E----I-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (212)
Q Consensus 81 ~~~~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~-e----l-~~~p~~~VP~L~~~g~~i~eS~~I~~yL 154 (212)
+.+..+++++|+..+||||.+++.+|...++++.++++|..... + + ++.+..+||.++++|+.|++++++..+-
T Consensus 9 ~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 9 KMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred HHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 34567899999999999999999999999999999999865433 3 3 3788999999999999999999999875
Q ss_pred H
Q 028229 155 D 155 (212)
Q Consensus 155 ~ 155 (212)
.
T Consensus 89 ~ 89 (104)
T KOG1752|consen 89 K 89 (104)
T ss_pred H
Confidence 4
No 80
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.06 E-value=6.6e-10 Score=76.69 Aligned_cols=58 Identities=19% Similarity=0.488 Sum_probs=47.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHhhCCCCcccEEEECCe-eee
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIKWSEYKKVPILMVDGE-QLV 145 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~~~p~~~VP~L~~~g~-~i~ 145 (212)
|+||+.+.||+|.+++.+|+++|++|+.++++... ..+++..+..+||+++++|. .+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~~ 61 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSWS 61 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEEe
Confidence 58999999999999999999999999999997543 22355568889999999765 443
No 81
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.04 E-value=1.4e-09 Score=76.22 Aligned_cols=69 Identities=23% Similarity=0.572 Sum_probs=59.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--cEEEEeCCCCh-H----HHh-hCCCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIP--YKVVEVNPINK-K----EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~--y~~v~v~~~~~-~----el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
|++|+.++||+|.+++.+|.+++++ |+.++++.... . .+. .++..++|++++||..++++++++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5899999999999999999999999 99999875432 2 233 57888999999999999999999988754
No 82
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.97 E-value=3.1e-09 Score=71.91 Aligned_cols=61 Identities=34% Similarity=0.715 Sum_probs=51.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDS 147 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS 147 (212)
++++|+.++||+|.+++.+|.++|++|..++++... ..++. ++|.+++|+|+++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 489999999999999999999999999999997642 22343 78999999999998877654
No 83
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.94 E-value=6.2e-09 Score=71.68 Aligned_cols=69 Identities=19% Similarity=0.405 Sum_probs=54.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh--HHH-hhC-CCCcccEEEE-CCeeeec--HHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWS-EYKKVPILMV-DGEQLVD--SSAIIDQLD 155 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~--~el-~~~-p~~~VP~L~~-~g~~i~e--S~~I~~yL~ 155 (212)
+|+||+.++||+|++++.+|.++|++|+.++++.... .++ +++ +..+||+++. ||..+.+ ...+..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 4899999999999999999999999999998875432 223 365 8999999975 7777654 445666664
No 84
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.89 E-value=6.8e-09 Score=85.11 Aligned_cols=72 Identities=32% Similarity=0.546 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeCCCChHH-H-hhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCCCC
Q 028229 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE-I-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKAD 165 (212)
Q Consensus 94 ~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~e-l-~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~lp~ 165 (212)
..||||+++.+.|.++|++|++.-||...+++ + ++.|.+++|+|..||..+.|+..|.++|+++++++.++.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcc
Confidence 45999999999999999999999999877776 4 489999999999999999999999999999999887643
No 85
>PLN02907 glutamate-tRNA ligase
Probab=98.88 E-value=8.7e-09 Score=99.33 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEE-CCeeeecHHHHHHHHHhhcCCCCC-CC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKRK-AD 165 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~~~~~~~~l-p~ 165 (212)
++||+.+.++ +.++.++|++.|++|+.++. +|.|+||+|++ ||..|+||.+|++||++.++...+ |.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~----------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~ 71 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPS----------LKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQ 71 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEeec----------CCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCC
Confidence 7899888764 66799999999999999752 58999999996 889999999999999999976654 88
Q ss_pred CcccHHHHHHHHhh-hc
Q 028229 166 SPSGDDEEKKWRGY-DL 181 (212)
Q Consensus 166 ~~~~~a~v~~w~~~-d~ 181 (212)
++.+++++++|+.| +.
T Consensus 72 d~~erAqV~qWL~~~~~ 88 (722)
T PLN02907 72 DAFESSQVDEWLDYAPT 88 (722)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 88899999999999 65
No 86
>PTZ00062 glutaredoxin; Provisional
Probab=98.84 E-value=9.8e-09 Score=84.97 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hCCCCcccEEEECCeeeecHHHHHH
Q 028229 81 TDLVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (212)
Q Consensus 81 ~~~~~~~v~Ly~~-----~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~ 152 (212)
+.+..++|+||.+ +.||||++++.+|.++|++|+.++++.+. +..++ ++++.+||++++||+.|++.+++.+
T Consensus 108 ~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 108 RLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred HHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 4566789999988 68999999999999999999999886432 23354 7899999999999999999999988
Q ss_pred HHH
Q 028229 153 QLD 155 (212)
Q Consensus 153 yL~ 155 (212)
..+
T Consensus 188 l~~ 190 (204)
T PTZ00062 188 LYE 190 (204)
T ss_pred HHH
Confidence 543
No 87
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.77 E-value=4.6e-08 Score=76.99 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=58.3
Q ss_pred cEEEEEeC------CChhHHHHHHHHHhcCCCcEEEEeCCC--ChHHHh-hCC----CCcccEEEECCeeeecHHHHHHH
Q 028229 87 EVVLYQYE------ACPFCNKVKAFLDYYDIPYKVVEVNPI--NKKEIK-WSE----YKKVPILMVDGEQLVDSSAIIDQ 153 (212)
Q Consensus 87 ~v~Ly~~~------~sp~c~kvr~~L~~~gi~y~~v~v~~~--~~~el~-~~p----~~~VP~L~~~g~~i~eS~~I~~y 153 (212)
.|+||..+ .||+|.+++.+|+.++|+|++++|+.. .+++++ +.+ ..+||+|+++|+.|++.+++.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 47899999 899999999999999999999999754 244554 434 48999999999999999999886
Q ss_pred HH
Q 028229 154 LD 155 (212)
Q Consensus 154 L~ 155 (212)
.+
T Consensus 81 ~e 82 (147)
T cd03031 81 NE 82 (147)
T ss_pred HH
Confidence 43
No 88
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.65 E-value=1e-07 Score=86.70 Aligned_cols=66 Identities=24% Similarity=0.519 Sum_probs=56.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCCh-HHH-h---------hCCCCcccEEEECCeeeecHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-K---------WSEYKKVPILMVDGEQLVDSSAIID 152 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~-~el-~---------~~p~~~VP~L~~~g~~i~eS~~I~~ 152 (212)
+|++|+.++||+|.+++.+|..+||+|++++++.... .++ + .++..+||++++||+.|++.+++..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 5999999999999999999999999999999974321 121 1 2578899999999999999999876
No 89
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.4e-07 Score=68.75 Aligned_cols=75 Identities=21% Similarity=0.468 Sum_probs=62.2
Q ss_pred CCCCCCcEEEEE-----eCCChhHHHHHHHHHhcC-CCcEEEEe--CCCChHHHh-hCCCCcccEEEECCeeeecHHHHH
Q 028229 81 TDLVPKEVVLYQ-----YEACPFCNKVKAFLDYYD-IPYKVVEV--NPINKKEIK-WSEYKKVPILMVDGEQLVDSSAII 151 (212)
Q Consensus 81 ~~~~~~~v~Ly~-----~~~sp~c~kvr~~L~~~g-i~y~~v~v--~~~~~~el~-~~p~~~VP~L~~~g~~i~eS~~I~ 151 (212)
+.+.+++|+||- +|.|.|+.++--.|...| ++|..++| |++-+..++ .+.+-++|+|.++|+.|++|+.|.
T Consensus 10 ~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~ 89 (105)
T COG0278 10 KQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVR 89 (105)
T ss_pred HHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHH
Confidence 345678999995 578999999999999999 78887776 333455576 789999999999999999999988
Q ss_pred HHHH
Q 028229 152 DQLD 155 (212)
Q Consensus 152 ~yL~ 155 (212)
+..+
T Consensus 90 Em~q 93 (105)
T COG0278 90 EMYQ 93 (105)
T ss_pred HHHH
Confidence 8664
No 90
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.24 E-value=3.9e-06 Score=56.43 Aligned_cols=58 Identities=12% Similarity=0.360 Sum_probs=44.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCCChHHH-hhCCCCcccEEEECCeeeec
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVD 146 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~~g~~i~e 146 (212)
++++|+.++||+|.+++..|++. +++|..++++ ..+++ ...+...+|++++||+.++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EFPDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cCHhHHHHcCCcccCEEEECCEEEEe
Confidence 58999999999999999999876 5666666554 33344 35677789999999987753
No 91
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=98.16 E-value=1.3e-05 Score=58.23 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred EEEEEeCCCh------hHHHHHHHHHhcCCCcEEEEeCCC--ChHHHh-hC----CCCcccEEEECCeeeecHHHHHHHH
Q 028229 88 VVLYQYEACP------FCNKVKAFLDYYDIPYKVVEVNPI--NKKEIK-WS----EYKKVPILMVDGEQLVDSSAIIDQL 154 (212)
Q Consensus 88 v~Ly~~~~sp------~c~kvr~~L~~~gi~y~~v~v~~~--~~~el~-~~----p~~~VP~L~~~g~~i~eS~~I~~yL 154 (212)
|++|....+. .|++++.+|..+||+|++++|+.. .+.++. .. +..++|.|++||..|++.+++.+.-
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 6788766653 588999999999999999999753 334443 43 4589999999999999999887743
No 92
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=3.1e-05 Score=63.77 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=74.2
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCCCCCcccHHHHHH
Q 028229 96 CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGDDEEKK 175 (212)
Q Consensus 96 sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~lp~~~~~~a~v~~ 175 (212)
..-|..|+.+|+..++||.++..+..+ .++|.|+||.|..|.+.+.|-..|+++++.+...-.-..+..++++++.
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~Nae----fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRANAE----FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCCcc----ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345899999999999999998664321 3899999999999999999999999999988643222344567999999
Q ss_pred HHhh-hccccchhhhhhhhhhccCC
Q 028229 176 WRGY-DLSSIHCCSIFFPLRHKGSS 199 (212)
Q Consensus 176 w~~~-d~~l~~~~~p~i~~~~~~~~ 199 (212)
.+++ ++.| ..-.+|..|.++.
T Consensus 110 ~vslVen~~---t~aEl~~s~~de~ 131 (257)
T KOG3027|consen 110 YVSLVENLL---TTAELYVSWNDEE 131 (257)
T ss_pred HHHHHHHHH---HHHHHHHHhccHH
Confidence 9988 7753 3334666666543
No 93
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.90 E-value=1.9e-05 Score=59.05 Aligned_cols=39 Identities=31% Similarity=0.747 Sum_probs=33.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el 126 (212)
|+||+.+.||+|++++.+|+++|++|+.+++. +....++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el 41 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEEL 41 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHH
Confidence 58999999999999999999999999999985 3344444
No 94
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.87 E-value=2.5e-05 Score=60.27 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=31.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~ 119 (212)
||+||+.+.||+|++++.+|+++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 489999999999999999999999999999985
No 95
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=3.6e-05 Score=64.02 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=61.8
Q ss_pred CCCCcEEEEE-----eCCChhHHHHHHHHHhcCCCcEEEEeCC--CChHHHh-hCCCCcccEEEECCeeeecHHHHHHHH
Q 028229 83 LVPKEVVLYQ-----YEACPFCNKVKAFLDYYDIPYKVVEVNP--INKKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (212)
Q Consensus 83 ~~~~~v~Ly~-----~~~sp~c~kvr~~L~~~gi~y~~v~v~~--~~~~el~-~~p~~~VP~L~~~g~~i~eS~~I~~yL 154 (212)
...++++||- .|.|+|++++.-.|.+.|++|...+|-. .-+..+| .+.+-+.|+|.++|+.+++++.|.+-+
T Consensus 136 v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 136 VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 4467899995 5779999999999999999999988843 2344466 799999999999999999999988876
Q ss_pred Hh
Q 028229 155 DQ 156 (212)
Q Consensus 155 ~~ 156 (212)
++
T Consensus 216 ~~ 217 (227)
T KOG0911|consen 216 EK 217 (227)
T ss_pred hc
Confidence 43
No 96
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.84 E-value=3.5e-05 Score=56.83 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=30.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~ 119 (212)
|+||+.+.||+|++++.+|+++|++|+++++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999985
No 97
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.81 E-value=4.1e-05 Score=57.55 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=31.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~ 119 (212)
|++||+.+.|++|++++.+|+++|++|+.+++.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 489999999999999999999999999999984
No 98
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.80 E-value=0.00013 Score=50.71 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=44.6
Q ss_pred cEEEEEeCCChhHHHH----HHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeee
Q 028229 87 EVVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV 145 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kv----r~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~ 145 (212)
.|.+|. ++||+|..+ +.++++.|++++++.++ +.++....+...+|+|+.||+.+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEEECCEEEE
Confidence 367777 999999998 77888899999998887 233444568889999999987664
No 99
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.76 E-value=0.00015 Score=50.31 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=49.2
Q ss_pred CChhHHHHHHHHHhcCCC---cEEEEeCCCChHHHhhCCCCcccEEEE-CCeeeecHHHHHHHHH
Q 028229 95 ACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (212)
Q Consensus 95 ~sp~c~kvr~~L~~~gi~---y~~v~v~~~~~~el~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~ 155 (212)
.+|-|..+.++|+..+.+ |+++..+.. .++|.+++|+|.+ +|+.+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-----~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-----WLSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-----CcCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 378999999999999999 888877531 2689999999999 9999999999999983
No 100
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.73 E-value=7.2e-05 Score=57.74 Aligned_cols=39 Identities=33% Similarity=0.580 Sum_probs=34.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~e 125 (212)
||++|+.+.|+.|++++.+|+++|++|+.+++. +....+
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~e 41 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDE 41 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHH
Confidence 489999999999999999999999999999884 444444
No 101
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.68 E-value=8.9e-05 Score=57.32 Aligned_cols=39 Identities=28% Similarity=0.666 Sum_probs=34.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~e 125 (212)
||+||+.+.|+.|++++.+|+++|++|+++++. +..+.+
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~e 41 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEE 41 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHH
Confidence 489999999999999999999999999999985 444444
No 102
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.63 E-value=0.0005 Score=47.44 Aligned_cols=56 Identities=18% Similarity=0.421 Sum_probs=41.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEeCCCChHHH-hhCCCCcccEEEECCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~----~gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~~g~ 142 (212)
++++|+.++||+|.++.-.|++ .+..+....+|....+++ +..+...+|+++.+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 5899999999999999988864 344455556665444443 4567778999999886
No 103
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.61 E-value=0.00051 Score=48.33 Aligned_cols=54 Identities=26% Similarity=0.571 Sum_probs=40.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC--CCcEEEEeCCCChHHHh-hCCCCcccEEEECC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYD--IPYKVVEVNPINKKEIK-WSEYKKVPILMVDG 141 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~g--i~y~~v~v~~~~~~el~-~~p~~~VP~L~~~g 141 (212)
+++||+.++|+.|..++..|.... .+|+...+|....+++. ..+ ..||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc-CCCCEEEEcC
Confidence 489999999999999999999654 45666666655666665 444 5899999987
No 104
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.56 E-value=0.00016 Score=53.63 Aligned_cols=40 Identities=15% Similarity=0.445 Sum_probs=34.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el~ 127 (212)
|++|+.+.|+.|++++.+|+++|++|+++++. +....+++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~ 42 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLE 42 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHH
Confidence 58999999999999999999999999999984 44555543
No 105
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.52 E-value=0.00014 Score=54.81 Aligned_cols=32 Identities=22% Similarity=0.661 Sum_probs=30.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~ 119 (212)
|+||+.+.||+|++++.+|+++|++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999999985
No 106
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.51 E-value=0.00023 Score=53.60 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=34.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el~ 127 (212)
.|+||+.+.|+.|++++.+|+++|++|+++++. +....+++
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~ 43 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLR 43 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHH
Confidence 379999999999999999999999999999883 44555543
No 107
>PHA02125 thioredoxin-like protein
Probab=97.38 E-value=0.00063 Score=47.00 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=41.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHh-hCCCCcccEEEECCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~~g~ 142 (212)
||++|+.++|+.|+++.-.|+. ++|+.+.+|.....++. ...-..+|++. +|+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~ 54 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLV-NTS 54 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEE-CCE
Confidence 4899999999999999999875 56777777765555554 66778999998 454
No 108
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00078 Score=51.05 Aligned_cols=40 Identities=25% Similarity=0.571 Sum_probs=34.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el 126 (212)
+|+||+.+.|.-|++++.+|++.||+|+++++. +..++++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL 43 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREEL 43 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHH
Confidence 699999999999999999999999999998873 4455553
No 109
>PRK10853 putative reductase; Provisional
Probab=97.20 E-value=0.00073 Score=51.23 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=35.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el~ 127 (212)
||+||+.+.|.-|++++.+|++.|++|+++++- +...++++
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~ 43 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQ 43 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHH
Confidence 489999999999999999999999999999873 44555543
No 110
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0012 Score=45.82 Aligned_cols=59 Identities=25% Similarity=0.582 Sum_probs=47.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCC------------ChHH---HhhCCCCcccEEEE-CCeeeec
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI------------NKKE---IKWSEYKKVPILMV-DGEQLVD 146 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~------------~~~e---l~~~p~~~VP~L~~-~g~~i~e 146 (212)
.+||+...||-|..+...|+..+++|+.+++... ..++ .+.+++-.+|.|.. ||++|.+
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 4899999999999999999999999999998421 1222 45688889999986 6777663
No 111
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.19 E-value=0.00095 Score=51.22 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el 126 (212)
.|+||+++.|.-|+|++.+|+++|++|+++++- +....++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL 43 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTL 43 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHH
Confidence 589999999999999999999999999999873 3444443
No 112
>PRK10026 arsenate reductase; Provisional
Probab=97.13 E-value=0.0011 Score=51.79 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=33.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEe--CCCChHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEV--NPINKKE 125 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v--~~~~~~e 125 (212)
+|+||+++.|.-|++++.+|+++|++|+++++ ++....+
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~e 43 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDE 43 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHH
Confidence 69999999999999999999999999999987 3444444
No 113
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.00 E-value=0.0057 Score=42.32 Aligned_cols=58 Identities=17% Similarity=0.461 Sum_probs=41.4
Q ss_pred cEEEEEeCCChhHHHHHH----HHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecH
Q 028229 87 EVVLYQYEACPFCNKVKA----FLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDS 147 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~----~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS 147 (212)
.|++| .+.||+|.++.. ++.+.|+.++.+++ .+.+++...+-..+|.+++||+.++..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEIEKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHHHHTT-SSSSEEEETTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHHHHcCCCCCCEEEECCEEEEEe
Confidence 36774 556999996555 55667888877776 345556778889999999999865443
No 114
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.92 E-value=0.0033 Score=45.14 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=43.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCCChHHH-hhCCCCcccEEEECCeeee
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLV 145 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~~g~~i~ 145 (212)
+-.|.+|..++||+|..+..++.+. ++.|+.++++ ..+++ +..+-..+|.++.||+.+.
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCCccCCEEEECCEEEE
Confidence 3468899999999999988888766 5666666665 33333 3567778999999987665
No 115
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.0055 Score=53.43 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEE-CCeeeecHHHHHHHHHhhcCCC--CCCCCcccHHH
Q 028229 96 CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPK--RKADSPSGDDE 172 (212)
Q Consensus 96 sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~-~g~~i~eS~~I~~yL~~~~~~~--~lp~~~~~~a~ 172 (212)
|+-|..+.++++..+-|.+++..+.. -.+|.|++|+|+. +|+.+.+-..|+.+|.+.-.+- .......+.++
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~-----~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~ 91 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNP-----WRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLAD 91 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCC-----CCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHH
Confidence 89999999999999966666554321 1478899999998 6799999999999998842111 11223567889
Q ss_pred HHHHHhh-hccccchh
Q 028229 173 EKKWRGY-DLSSIHCC 187 (212)
Q Consensus 173 v~~w~~~-d~~l~~~~ 187 (212)
...|+.| ++.+.+.+
T Consensus 92 ~~a~~sll~~~l~~a~ 107 (313)
T KOG3028|consen 92 TLAFMSLLEENLEPAL 107 (313)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999 88766555
No 116
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.82 E-value=0.0026 Score=47.54 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=33.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el 126 (212)
|+||+.+.|.-|++++.+|++.|++|+++++. +....++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el 41 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAEL 41 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHH
Confidence 58999999999999999999999999999873 3445453
No 117
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.79 E-value=0.0028 Score=47.54 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=33.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeC--CCChHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~--~~~~~el 126 (212)
|+||+.+.|+-|+|++.+|++.|++|+++++. +....++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el 41 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSEL 41 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHH
Confidence 58999999999999999999999999999874 4455554
No 118
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.68 E-value=0.0057 Score=38.08 Aligned_cols=52 Identities=29% Similarity=0.506 Sum_probs=39.0
Q ss_pred EEEEEeCCChhHHHHHHHHH-----hcCCCcEEEEeCCCChHHH--hhCCCCcccEEEE
Q 028229 88 VVLYQYEACPFCNKVKAFLD-----YYDIPYKVVEVNPINKKEI--KWSEYKKVPILMV 139 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~-----~~gi~y~~v~v~~~~~~el--~~~p~~~VP~L~~ 139 (212)
+.+|+..+|++|.+.+..+. ..++.+..++++....... ...+...+|.+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46788899999999999999 5567777776664432222 3678899999987
No 119
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.046 Score=46.84 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=70.3
Q ss_pred ccccCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHhcCCCc----EEEEe--CC------C------Ch-----------
Q 028229 73 VYAKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPY----KVVEV--NP------I------NK----------- 123 (212)
Q Consensus 73 ~~~~~~~~~~~~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y----~~v~v--~~------~------~~----------- 123 (212)
..++++.......+..-||.--.||++.|..+.++.||++- -.+.- +. . +.
T Consensus 23 ~iSkd~~~~~pakgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~ 102 (319)
T KOG2903|consen 23 TISKDHPIFKPAKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLN 102 (319)
T ss_pred ccCCCCCccCCCCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccc
Confidence 33445444334457899999999999999999999999852 22211 10 0 00
Q ss_pred -----HHH-h-----hCCCCcccEEEEC---CeeeecHHHHHHHHH---hhcCC-C-----CC-CCCcccHHHHHHHHhh
Q 028229 124 -----KEI-K-----WSEYKKVPILMVD---GEQLVDSSAIIDQLD---QKLTP-K-----RK-ADSPSGDDEEKKWRGY 179 (212)
Q Consensus 124 -----~el-~-----~~p~~~VP~L~~~---g~~i~eS~~I~~yL~---~~~~~-~-----~l-p~~~~~~a~v~~w~~~ 179 (212)
.|+ . .++..+||||.|- ..+-.||.+|++.+. ..+.. . .+ | +..+++++.|.+|
T Consensus 103 g~k~l~elY~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~w 180 (319)
T KOG2903|consen 103 GAKRLRELYYIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSW 180 (319)
T ss_pred cchhHHHHHhhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhce
Confidence 012 1 2346799999983 345689999999998 33322 1 12 4 3448899999998
Q ss_pred -hccc
Q 028229 180 -DLSS 183 (212)
Q Consensus 180 -d~~l 183 (212)
-+.+
T Consensus 181 vy~~I 185 (319)
T KOG2903|consen 181 VYDKI 185 (319)
T ss_pred ecccc
Confidence 5443
No 120
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.60 E-value=0.052 Score=39.92 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=45.6
Q ss_pred cEEEEEeCCCh------hHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-hC---------CCCcccEEEECCeeeecHH
Q 028229 87 EVVLYQYEACP------FCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WS---------EYKKVPILMVDGEQLVDSS 148 (212)
Q Consensus 87 ~v~Ly~~~~sp------~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~~---------p~~~VP~L~~~g~~i~eS~ 148 (212)
.|++|....+. .+.++..+|+.++|+|+.+++.... +..+. .. +..-.|.|+.||+.+++-.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 37788766654 4679999999999999999997532 22333 33 3345589999999999998
Q ss_pred HHHHHHH
Q 028229 149 AIIDQLD 155 (212)
Q Consensus 149 ~I~~yL~ 155 (212)
++.+.-+
T Consensus 82 ~f~ea~E 88 (99)
T PF04908_consen 82 DFEEANE 88 (99)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 8877654
No 121
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.26 E-value=0.25 Score=34.77 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=47.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCeee------ecHHHHHH
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL------VDSSAIID 152 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i------~eS~~I~~ 152 (212)
.-++.|+.++|+.|+..+-.|.+. +-++....+|.....++ +...-..+|.+.. +|..+ .+...|.+
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 357778889999999888666443 22555556655444443 4667888999875 77544 35567777
Q ss_pred HHHh
Q 028229 153 QLDQ 156 (212)
Q Consensus 153 yL~~ 156 (212)
+|++
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
No 122
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.14 E-value=0.054 Score=40.29 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=35.7
Q ss_pred CcEEEE-EeCCChhHHHHHHHHHhcCCC---cEEEEeCCCChHHHh-hCCCCcccEEEE
Q 028229 86 KEVVLY-QYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIK-WSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly-~~~~sp~c~kvr~~L~~~gi~---y~~v~v~~~~~~el~-~~p~~~VP~L~~ 139 (212)
..+++| +.+|||+|+.++-+|++..-. .+...+|....+++. ..+-..+|.+..
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEE
Confidence 345555 668999999998888766432 233344433444543 667889999986
No 123
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.08 E-value=0.16 Score=38.45 Aligned_cols=58 Identities=17% Similarity=0.431 Sum_probs=37.3
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCCcEEEEeCCCC------hHH---H-hh----CCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFL----DYYDIPYKVVEVNPIN------KKE---I-KW----SEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L----~~~gi~y~~v~v~~~~------~~e---l-~~----~p~~~VP~L~~--~g~~i 144 (212)
-++.|+.++||+|+++.-.| ++.++++..++++... ..+ + +. .+-..+|.++. +|+.+
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 47788999999999865555 4446777777776321 112 2 12 23455999986 78643
No 124
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.89 E-value=0.045 Score=40.51 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=23.7
Q ss_pred EEeCCChhHHHHHHHHHhcCCCcEEEEeC
Q 028229 91 YQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (212)
Q Consensus 91 y~~~~sp~c~kvr~~L~~~gi~y~~v~v~ 119 (212)
|+.+.|.-|++++.+|++.|++|+.+++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999999884
No 125
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.19 E-value=0.19 Score=41.49 Aligned_cols=56 Identities=11% Similarity=0.325 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEeCCCChHHHh-hCCCCcccEEEEC
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINKKEIK-WSEYKKVPILMVD 140 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi---~y~~v~v~~~~~~el~-~~p~~~VP~L~~~ 140 (212)
+-.|++|+.++||+|..+...+++.-- ..+...+|....+++. ..+-..+|.++.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe
Confidence 345777899999999999888876532 2333345554555543 6677789999874
No 126
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.13 E-value=0.26 Score=35.10 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=38.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
.+.+|+.++|+.|+...-.|.+. +-.+....+|....+++. ...-..+|.++. +|+.+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 46677789999999888888652 112444555554555543 556678998875 77654
No 127
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.05 E-value=0.41 Score=32.34 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=38.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCe
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~-----~gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~ 142 (212)
.-+.+|+.++|++|......+.+ .++.+..++++. .+++ +..+...+|+++. +|.
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE
Confidence 34788888999999999998877 666666665553 2232 3445667898775 665
No 128
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.93 E-value=0.3 Score=36.56 Aligned_cols=65 Identities=22% Similarity=0.447 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHhc---CCCcEEEEeCC-CChHH-Hh-hC-CCCcccEEEE-CCe-------------eeecHHHHHHHH
Q 028229 96 CPFCNKVKAFLDYY---DIPYKVVEVNP-INKKE-IK-WS-EYKKVPILMV-DGE-------------QLVDSSAIIDQL 154 (212)
Q Consensus 96 sp~c~kvr~~L~~~---gi~y~~v~v~~-~~~~e-l~-~~-p~~~VP~L~~-~g~-------------~i~eS~~I~~yL 154 (212)
||+|..+.=+|... .-..+++.|+. ..+.+ +. +. .+...|+|+. +|. .|.|...|++||
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~L 103 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYL 103 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHH
Confidence 99999999888765 22234444443 22334 33 32 4678899987 443 799999999999
Q ss_pred HhhcCC
Q 028229 155 DQKLTP 160 (212)
Q Consensus 155 ~~~~~~ 160 (212)
.++|+-
T Consensus 104 a~r~g~ 109 (112)
T PF11287_consen 104 AERHGF 109 (112)
T ss_pred HHHcCC
Confidence 999984
No 129
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=93.51 E-value=0.28 Score=36.44 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=41.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeeee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV 145 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi---~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i~ 145 (212)
.-+..|+.++|+.|+...-.|++.-- ......+|....+++. ...-..+|++.. +|+.+.
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 34667777999999988877766321 2355566655555543 567788998875 887665
No 130
>PRK10996 thioredoxin 2; Provisional
Probab=93.00 E-value=1.2 Score=34.14 Aligned_cols=59 Identities=17% Similarity=0.353 Sum_probs=39.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
..+..|+-++|+.|++..-.|.+. +-.+.+..+|....+++. ...-..+|.++. +|+.+
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 346778889999999766555442 334556666665555543 556778998875 77644
No 131
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=92.99 E-value=0.39 Score=33.77 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=39.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
-+..|+.++|+.|++..-.|++. +..+....+|....+++. .-+-..+|++.. +|+.+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46778889999999988877653 334566666655555543 445677998765 77643
No 132
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.85 E-value=0.17 Score=47.33 Aligned_cols=71 Identities=15% Similarity=0.336 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCC-----CcEEEEeCCCChHHHh-hCCCCcccEEEECCeeeecH----HHHHHHH
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDI-----PYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQLVDS----SAIIDQL 154 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi-----~y~~v~v~~~~~~el~-~~p~~~VP~L~~~g~~i~eS----~~I~~yL 154 (212)
+-.|++|..+.||||-.+..++.+.-+ ..+. +|-...+++. ......||.+++||..+++. ..+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 446899999999999998888876643 3333 3333344443 55667999999998776653 3445555
Q ss_pred Hhh
Q 028229 155 DQK 157 (212)
Q Consensus 155 ~~~ 157 (212)
.+.
T Consensus 196 ~~~ 198 (515)
T TIGR03140 196 EET 198 (515)
T ss_pred hhc
Confidence 443
No 133
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=92.77 E-value=1.1 Score=32.90 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=35.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCeee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i 144 (212)
.-++.|+.+||+.|+...-.+.+. +.......+|....+++ ...+-..+|.++. +|+.+
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEE
Confidence 346778889999998665444222 22234444444333343 3557788998874 77543
No 134
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.62 E-value=0.18 Score=47.15 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEeCCCChHHHh-hCCCCcccEEEECCeeeec----HHHHHHHH
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQLVD----SSAIIDQL 154 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~g-----i~y~~v~v~~~~~~el~-~~p~~~VP~L~~~g~~i~e----S~~I~~yL 154 (212)
+-.|++|..+.||||-.+..++.+.- |..+.+ |-...+++. ......||.+++||..+++ -..+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI--DGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE--EchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 45689999999999999888876653 333333 333444543 5677799999999876655 24566666
Q ss_pred Hhh
Q 028229 155 DQK 157 (212)
Q Consensus 155 ~~~ 157 (212)
.+.
T Consensus 195 ~~~ 197 (517)
T PRK15317 195 DTG 197 (517)
T ss_pred hcc
Confidence 654
No 135
>PRK09381 trxA thioredoxin; Provisional
Probab=92.45 E-value=1.7 Score=31.33 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=36.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~----~gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i 144 (212)
-+..|+.++||.|+...-.|++ .+-.+....+|....+++ ...+-..+|.++. +|+.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 4667788999999987766543 222345555554444443 3456788998875 77654
No 136
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.32 Score=41.94 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=54.9
Q ss_pred CCcEEEEEeCCC------hhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHh-h----CCCCcccEEEECCeeeecHHHHH
Q 028229 85 PKEVVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-W----SEYKKVPILMVDGEQLVDSSAII 151 (212)
Q Consensus 85 ~~~v~Ly~~~~s------p~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~-~----~p~~~VP~L~~~g~~i~eS~~I~ 151 (212)
.+.|++|....- -.|..||.+|+-.++-|++++|+++. +.|++ + ...-.+|.++++|..|++...|+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 456888875442 25899999999999999999998753 45654 2 23578899999999999999988
Q ss_pred HHH
Q 028229 152 DQL 154 (212)
Q Consensus 152 ~yL 154 (212)
+.-
T Consensus 210 ~Ln 212 (281)
T KOG2824|consen 210 RLN 212 (281)
T ss_pred hhh
Confidence 754
No 137
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.25 E-value=0.38 Score=45.48 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=44.1
Q ss_pred CCcEEEEEeCCChhHHHHHHHH----Hhc-CCCcEEEEeCCCChHHHh-hCCCCcccEEEECCeeeec
Q 028229 85 PKEVVLYQYEACPFCNKVKAFL----DYY-DIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQLVD 146 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L----~~~-gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~~g~~i~e 146 (212)
+-.|++|.-+.||||-++..++ .+. +|.++.+++.. .+++. ..+-..||.+++||+.++.
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--~~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--FPDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--cHHHHHhCCceecCEEEECCEEEEe
Confidence 3458999999999998776654 444 68888877753 34544 6788899999999876543
No 138
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.21 E-value=1.5 Score=30.52 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=34.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~ 142 (212)
-+..|+.++|++|+.....|... +-......+|....+++ +..+-..+|.++. +|.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45666778899999887666543 22244555554444443 3446668998875 664
No 139
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=92.14 E-value=0.6 Score=35.14 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=39.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----cEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~----y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
.++-|+-+|||.|+...-.|++.--. .....||.+..+++. ..+-..+|.+.. +|+.+
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 45668899999999887777555322 234455555555654 556677999875 78665
No 140
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.00 E-value=1.7 Score=30.77 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=35.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~ 142 (212)
.+..|+.++|+.|+...-.+.+. +..+....+|....+++ +...-..+|.++. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 58888999999999776665433 22344444444343443 3456678888875 553
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.95 E-value=0.63 Score=38.40 Aligned_cols=74 Identities=16% Similarity=0.433 Sum_probs=47.5
Q ss_pred CCcEEEEEe---CCChhHHHHHHHHHhcC-----CCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee----ec---
Q 028229 85 PKEVVLYQY---EACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL----VD--- 146 (212)
Q Consensus 85 ~~~v~Ly~~---~~sp~c~kvr~~L~~~g-----i~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i----~e--- 146 (212)
+..+++|.. +|||.|+...-.|++.. +.+..+.+|....+++. ...-..+|++.. ||..+ .+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 445778877 99999998888886663 33445555544444543 667788998876 55433 12
Q ss_pred HHHHHHHHHhhc
Q 028229 147 SSAIIDQLDQKL 158 (212)
Q Consensus 147 S~~I~~yL~~~~ 158 (212)
-..+..+|+..+
T Consensus 100 ~~~l~~~i~~~~ 111 (215)
T TIGR02187 100 GYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHH
Confidence 345566666654
No 142
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=91.89 E-value=2.2 Score=32.97 Aligned_cols=74 Identities=12% Similarity=0.271 Sum_probs=42.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEeCCCChHH-HhhCCCCcccEEEE---CCeeee------cHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINKKE-IKWSEYKKVPILMV---DGEQLV------DSSAI 150 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~------gi~y~~v~v~~~~~~e-l~~~p~~~VP~L~~---~g~~i~------eS~~I 150 (212)
-++.|+-+||+.|+...-.|.+. ++.|..+.++.....+ .....-..+|.++. +|+.+. .-..|
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l 102 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVL 102 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHH
Confidence 45667778999999777666543 2334444444322223 33456677897764 465442 23445
Q ss_pred HHHHHhhcCC
Q 028229 151 IDQLDQKLTP 160 (212)
Q Consensus 151 ~~yL~~~~~~ 160 (212)
.+.|++....
T Consensus 103 ~~~l~~l~~~ 112 (142)
T cd02950 103 AQNLDALVAG 112 (142)
T ss_pred HHHHHHHHcC
Confidence 5566655543
No 143
>PTZ00051 thioredoxin; Provisional
Probab=91.59 E-value=1.3 Score=31.17 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=36.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC---CCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCeee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYD---IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~g---i~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i 144 (212)
.-+..|+.++|+.|+...-.|.... ..+....+|.....++ +..+-..+|.++. +|+.+
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 3467788899999998877776531 1233444444333333 3556678998775 67543
No 144
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=91.57 E-value=0.74 Score=34.40 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=36.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHh------cCCCcEEEEeCCCChHH-HhhCCCC-cccEEEE---CCeeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDY------YDIPYKVVEVNPINKKE-IKWSEYK-KVPILMV---DGEQLV 145 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~------~gi~y~~v~v~~~~~~e-l~~~p~~-~VP~L~~---~g~~i~ 145 (212)
-++.|+.++|+.|++..-.+.+ .+..|..+.++....+. -..+..+ .+|.++. +|+.+.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 4667788999999988766655 23456666666432222 1233333 4998875 565543
No 145
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=91.20 E-value=4.4 Score=34.03 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=48.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee------ecHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL------VDSSAIIDQ 153 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i------~eS~~I~~y 153 (212)
-++.|+-+||+.|+...-.+++. +-......+|....+++. ...-..+|.+.. +|+.+ .....|.+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHH
Confidence 46778889999999776666443 212344445544444443 456678898774 77654 246788899
Q ss_pred HHhhcCCC
Q 028229 154 LDQKLTPK 161 (212)
Q Consensus 154 L~~~~~~~ 161 (212)
+.+.+...
T Consensus 135 i~~~~~~~ 142 (224)
T PTZ00443 135 ALGDFKKA 142 (224)
T ss_pred HHHHHHhh
Confidence 98888543
No 146
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=91.04 E-value=2.2 Score=30.66 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=34.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----C-CCcEEEEeCCCChHHHhhCCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----g-i~y~~v~v~~~~~~el~~~p~~~VP~L~~--~g~~i 144 (212)
-+..|+.+||+.|+...-.|... + -...+..+|.+.....+...-..+|.+.. +|+.+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 46778889999999877666443 2 11233344433322234556778887765 77643
No 147
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=1.1 Score=38.97 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCc-EEEEe-CC--CC------hH----------------HH--h----hCCC
Q 028229 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPY-KVVEV-NP--IN------KK----------------EI--K----WSEY 131 (212)
Q Consensus 84 ~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y-~~v~v-~~--~~------~~----------------el--~----~~p~ 131 (212)
.++...||..-.||++.|..++=+.||++= ..+.| ++ .. .+ ++ + .++.
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 356799999999999999999999999852 22222 11 00 00 11 1 2456
Q ss_pred CcccEEEEC--Ce-eeecHHHHHHHHHhhcCC---CC---CCCCcccHHHHHHHHhh
Q 028229 132 KKVPILMVD--GE-QLVDSSAIIDQLDQKLTP---KR---KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 132 ~~VP~L~~~--g~-~i~eS~~I~~yL~~~~~~---~~---lp~~~~~~a~v~~w~~~ 179 (212)
-+||+|.|. .+ +-.||.+|++-+...|+. .. +|. ..+.+++.|++|
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~ 182 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKW 182 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhh
Confidence 899999993 33 348999999999876643 11 353 347888888887
No 148
>PHA02278 thioredoxin-like protein
Probab=90.66 E-value=1.7 Score=31.86 Aligned_cols=59 Identities=15% Similarity=0.423 Sum_probs=37.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEeCCCC--hHHHh-hCCCCcccEEEE--CCeee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPIN--KKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~------gi~y~~v~v~~~~--~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
.-++-|+.+||+.|+...-.+++. .+++..+++|... .+++. ...-..+|++.. ||+.+
T Consensus 16 ~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 16 DVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred cEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 346667889999999777666443 1334445555321 23443 556678898875 88755
No 149
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=90.30 E-value=2.1 Score=29.92 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=37.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYD----IPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ 143 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~g----i~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~ 143 (212)
-+..|+-++|+.|+...-.+.+.. -.+....+|....+++. .-+-..+|.++. +|..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 466777899999998877775432 23445566655555543 456678998885 6654
No 150
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=1.5 Score=41.01 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=53.6
Q ss_pred EEEEEeCCChhHH-------HHHHHHHhcCCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCee------eecHHHHH
Q 028229 88 VVLYQYEACPFCN-------KVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ------LVDSSAII 151 (212)
Q Consensus 88 v~Ly~~~~sp~c~-------kvr~~L~~~gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~------i~eS~~I~ 151 (212)
++-|+-|||.+|. ++-..|.+.|=+.....||-....++. ...-...|+|.+ ||.. .-+...|+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 5678889999997 566677777778888888754334433 344555677765 6653 46788999
Q ss_pred HHHHhhcCCCC
Q 028229 152 DQLDQKLTPKR 162 (212)
Q Consensus 152 ~yL~~~~~~~~ 162 (212)
.||.++.++..
T Consensus 126 ~wl~kq~gPa~ 136 (493)
T KOG0190|consen 126 KWLKKQSGPAS 136 (493)
T ss_pred HHHHhccCCCc
Confidence 99999987754
No 151
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=89.69 E-value=1.5 Score=31.58 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=35.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC------C----CcEEEEeCCCChHHH-hhCCCCcccEEEE--CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYD------I----PYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~g------i----~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~ 142 (212)
-++.|+.++|++|+...-.+.+.- . .+....+|-...+++ ...+-..+|.+.. +|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 467888899999998776664321 1 133444444344454 3557788898875 665
No 152
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=89.68 E-value=1.4 Score=33.52 Aligned_cols=60 Identities=10% Similarity=0.301 Sum_probs=39.8
Q ss_pred EEEEEeCCChhHHHHHH-HH------HhcCCCcEEEEeCCCChHHHh---------hCCCCcccEEEE---CCeeeecH
Q 028229 88 VVLYQYEACPFCNKVKA-FL------DYYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVDS 147 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~-~L------~~~gi~y~~v~v~~~~~~el~---------~~p~~~VP~L~~---~g~~i~eS 147 (212)
+..|+..+|++|++... .+ ...+-.|..+.+|....+++. ..+.+-+|.++. +|+.+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 44567899999997743 22 233446888888765444321 246678998885 78888776
No 153
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=89.38 E-value=1.8 Score=32.10 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=15.9
Q ss_pred CcEEEEEeCCChhHHHHHHH
Q 028229 86 KEVVLYQYEACPFCNKVKAF 105 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~ 105 (212)
..++.|+.++|++|++....
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~ 35 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRD 35 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHH
Confidence 45778889999999987643
No 154
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=89.07 E-value=1.6 Score=31.24 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=32.1
Q ss_pred CcEEEEEeCCChhHHHHHHHH-------HhcCCCcEEEEeCCCC----hHHH-hhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L-------~~~gi~y~~v~v~~~~----~~el-~~~p~~~VP~L~~ 139 (212)
..++.|+.++|++|++....+ .+.+-.+..+.+|... ..++ ...+-..+|+++.
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 346788899999999876433 1111135555555322 2233 3556678998874
No 155
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.70 E-value=2.6 Score=32.92 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=53.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCC--hHHHhh-CCCCcccEEEECCeee---ecHHHHHHHHHhhc
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIKW-SEYKKVPILMVDGEQL---VDSSAIIDQLDQKL 158 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~--~~el~~-~p~~~VP~L~~~g~~i---~eS~~I~~yL~~~~ 158 (212)
...+++|..|.|..|..--..|+.+|+..+.+..+... ++.+-+ ...+.-=+.++||..| .--.+|.+.|++..
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 35799999999999999999999999888888776422 111111 1233344677888766 44688999999987
Q ss_pred C
Q 028229 159 T 159 (212)
Q Consensus 159 ~ 159 (212)
+
T Consensus 105 d 105 (149)
T COG3019 105 D 105 (149)
T ss_pred C
Confidence 3
No 156
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=88.60 E-value=0.83 Score=34.64 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=30.0
Q ss_pred eCCChhHHHHH----HHHHhcCCCcEEEEeCCCChHH-------HhhCC---CCcccEEEE--CCeeeecHHHH
Q 028229 93 YEACPFCNKVK----AFLDYYDIPYKVVEVNPINKKE-------IKWSE---YKKVPILMV--DGEQLVDSSAI 150 (212)
Q Consensus 93 ~~~sp~c~kvr----~~L~~~gi~y~~v~v~~~~~~e-------l~~~p---~~~VP~L~~--~g~~i~eS~~I 150 (212)
.+|||.|.++. .++....-...++.+....+++ ++.+| ...||+|+- ++..+.|....
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~ 108 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECL 108 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhc
Confidence 47899999776 5555543345555444334444 33333 357899986 55667666543
No 157
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=88.37 E-value=2.6 Score=33.22 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=35.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEeCCCChHHHh-hCC------CCcccEEEE--CCeeee
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEIK-WSE------YKKVPILMV--DGEQLV 145 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~g-----i~y~~v~v~~~~~~el~-~~p------~~~VP~L~~--~g~~i~ 145 (212)
++.|+.++||.|+...-.+++.- -.++...+|.+..+++. ... -+++|++.. +|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 77888899999998776664432 22445555544444432 222 245898875 887765
No 158
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=88.27 E-value=4 Score=31.76 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHH---HhhCCC---CcccEEEE-CCeeeecHHHHHHHHHh
Q 028229 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE---IKWSEY---KKVPILMV-DGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 84 ~~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~e---l~~~p~---~~VP~L~~-~g~~i~eS~~I~~yL~~ 156 (212)
++.++++++-..||+|.....+|..++.+-..+..+....+. ++..|. ...=++.+ +|..+.+|+++++-+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRL 85 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHH
Confidence 445677777788999999999999998876666655433222 333332 21222333 89999999999998776
Q ss_pred hc
Q 028229 157 KL 158 (212)
Q Consensus 157 ~~ 158 (212)
.-
T Consensus 86 L~ 87 (137)
T COG3011 86 LP 87 (137)
T ss_pred CC
Confidence 64
No 159
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=88.05 E-value=2.7 Score=29.79 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=35.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----cEEEEeCCCChHHH-hhCCCCcccEEEE--CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~----y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~ 142 (212)
-+..|+.++|+.|+...-.+.+..-. +.+..+|-...+++ +...-..+|.+.. +|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 46778889999999776666444222 34445554444444 3456678898865 664
No 160
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=87.66 E-value=1.8 Score=30.87 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=34.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCC----CcEEEEeCCCChHHHh-hCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi----~y~~v~v~~~~~~el~-~~p~~~VP~L~~ 139 (212)
.-++.|+.++|+.|++..-.+++.-- .+....+|....+++. ..+-..+|.+..
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 35677888999999977666544322 2344455554555543 456778998875
No 161
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=1.8 Score=36.17 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHh-hCCCCcccEEEECCeee----ecHHHHHHHHHhh
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQL----VDSSAIIDQLDQK 157 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~~g~~i----~eS~~I~~yL~~~ 157 (212)
.-+|++|.+..|--|...-.+|+.+|+--.+..++....+.+. .+.--.||.++.||+.+ .|-.+|-.-+.-+
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~G~ 87 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILSGQ 87 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHcCc
Confidence 3569999999999999999999999997666666543333333 56778899999999764 5666666666543
No 162
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=87.33 E-value=1.9 Score=31.66 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=36.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC---cEEEEeCCCChHHHh-hCCCCcccEEEE--CCeeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV 145 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~---y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i~ 145 (212)
-+..|+-++|+.|+...-.|++.--. .....+|.... ++. ...-..+|.+.. +|+.+.
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 45677889999999887777553211 23344443333 543 456678998875 887654
No 163
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=87.03 E-value=4.8 Score=28.74 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=31.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEeCCCChHHHh-hCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-------DIPYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-------gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~ 139 (212)
-+..|+.++||.|++..-.|.+. +..+....+|....+++. ...-..+|.++.
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 46677889999999666544332 333444444443334442 455677898875
No 164
>PHA03075 glutaredoxin-like protein; Provisional
Probab=86.27 E-value=1.1 Score=33.88 Aligned_cols=36 Identities=22% Similarity=0.515 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCC
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~ 120 (212)
.+.+.||+.|.|+-|.-+..+|.+..=+|+...|+.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 467999999999999999999999999999988763
No 165
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=4.4 Score=35.54 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=56.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeeeec------HHHHHH
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD------SSAIID 152 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i~e------S~~I~~ 152 (212)
.-++.|+.|+|+.|+...-.|+.. +=.|++..||.+..+.+. ..+-..||+++. +|.+|-+ -+.|.+
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 457888999999999777666544 446778888877777765 678899998874 8876633 357888
Q ss_pred HHHhhcCC
Q 028229 153 QLDQKLTP 160 (212)
Q Consensus 153 yL~~~~~~ 160 (212)
+|++..+.
T Consensus 125 ~ld~~~~~ 132 (304)
T COG3118 125 FLDKVLPA 132 (304)
T ss_pred HHHHhcCh
Confidence 99887765
No 166
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=85.95 E-value=1.8 Score=32.45 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCcEEEEEeCC--ChhHHHHHHHHHhcCCCc----EEEEeCCCChHHHh-hCCCCcccEEEE--CCeeeec
Q 028229 85 PKEVVLYQYEA--CPFCNKVKAFLDYYDIPY----KVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (212)
Q Consensus 85 ~~~v~Ly~~~~--sp~c~kvr~~L~~~gi~y----~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i~e 146 (212)
...|..|+-.+ ||-|..+.-.|++.--.| ....+|....+++. ...-..+|++.. +|+.+..
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 34577777775 999999888886664433 33355555555654 667788999886 8876644
No 167
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=85.91 E-value=5.1 Score=28.79 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCCC-hHHHh-hCCCCcccEEEE--CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPIN-KKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~-~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
-+..|+.+||+.|+...-.|.+. ++.|-.+++|... ..++. ...-..+|+++. +|+.+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 46677789999999777666543 3333333333221 12332 446677898765 77654
No 168
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=85.26 E-value=5 Score=28.15 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=33.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEeCCCC--hHHH-hhCCCCcccEEEE--CCee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY----D--IPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGEQ 143 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~----g--i~y~~v~v~~~~--~~el-~~~p~~~VP~L~~--~g~~ 143 (212)
.-+.+|+-++|++|+...-.+.+. . -.+....+|... .+++ ...+-..+|.++. +|+.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCe
Confidence 457888889999999775433222 1 223344444332 3343 3445667898865 5543
No 169
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=84.68 E-value=5.6 Score=30.04 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=32.9
Q ss_pred cEEEEEe-------CCChhHHHHHHHH----HhcCCCcEEEEeCCCC-------hHHHhhCCC--CcccEEEE--CCeee
Q 028229 87 EVVLYQY-------EACPFCNKVKAFL----DYYDIPYKVVEVNPIN-------KKEIKWSEY--KKVPILMV--DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~-------~~sp~c~kvr~~L----~~~gi~y~~v~v~~~~-------~~el~~~p~--~~VP~L~~--~g~~i 144 (212)
.++.|+- +|||.|+...-.| .+..-.+.++.||... ..++..... ..+|++.. +|..+
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCcee
Confidence 3555666 7999999765544 3333224444444322 123443322 37999986 55554
Q ss_pred ecH
Q 028229 145 VDS 147 (212)
Q Consensus 145 ~eS 147 (212)
.|.
T Consensus 104 ~~~ 106 (119)
T cd02952 104 VED 106 (119)
T ss_pred cch
Confidence 443
No 170
>PTZ00102 disulphide isomerase; Provisional
Probab=84.09 E-value=7.9 Score=35.33 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=48.1
Q ss_pred CcEEEEEeCCChhHHHHHHHH-------HhcCCCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCeee-----ecHHHH
Q 028229 86 KEVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL-----VDSSAI 150 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L-------~~~gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i-----~eS~~I 150 (212)
.-++.|+.+||++|++..-.+ ...+-++....+|.....++ +..+-..+|.+.. +|..+ .....|
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHH
Confidence 357888899999999765322 23334455555654444444 2445567888764 55432 356789
Q ss_pred HHHHHhhcCCC
Q 028229 151 IDQLDQKLTPK 161 (212)
Q Consensus 151 ~~yL~~~~~~~ 161 (212)
.+|+.+..++.
T Consensus 131 ~~~l~~~~~~~ 141 (477)
T PTZ00102 131 VSWIKKLTGPA 141 (477)
T ss_pred HHHHHHhhCCC
Confidence 99999887654
No 171
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=84.01 E-value=4 Score=28.41 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=33.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCC------CcEEEEeCCCChHHH-hhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDI------PYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi------~y~~v~v~~~~~~el-~~~p~~~VP~L~~ 139 (212)
..+.+|+.++|+.|++....+....- .+....+|-...+++ ...+...+|.++.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEE
Confidence 35788899999999986555543211 133444454344444 3456678998854
No 172
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=83.85 E-value=4.5 Score=32.19 Aligned_cols=37 Identities=32% Similarity=0.406 Sum_probs=25.8
Q ss_pred CCcEEEE-EeCCChhHH-------HHHHHHHhcCCCcEEEEeCCC
Q 028229 85 PKEVVLY-QYEACPFCN-------KVKAFLDYYDIPYKVVEVNPI 121 (212)
Q Consensus 85 ~~~v~Ly-~~~~sp~c~-------kvr~~L~~~gi~y~~v~v~~~ 121 (212)
.+-|.|| +..+||.|+ ++-..+...+-|++++.|+.+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 3344554 567899998 455566666778999999654
No 173
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=3.8 Score=32.34 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=43.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCC----cEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~----y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
.-++-|+.+||..|+...-.|+++--+ ++...+|.++..++. ...-.-||+++. ||+.+
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 457889999999999888888777544 344556666666664 567788998876 88766
No 174
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=83.16 E-value=5.1 Score=28.04 Aligned_cols=56 Identities=20% Similarity=0.394 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----C--CCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-----D--IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-----g--i~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~ 142 (212)
.+..|+.++|+.|++..-.+.+. + -.+....+|....+++ +...-..+|.++. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 57788889999999765544322 2 2345555554433343 3445677898764 554
No 175
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=82.57 E-value=4.8 Score=29.16 Aligned_cols=54 Identities=24% Similarity=0.419 Sum_probs=33.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCCC-hHHH-h-hCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPIN-KKEI-K-WSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~-~~el-~-~~p~~~VP~L~~ 139 (212)
..+..|+.++||.|++..-.+.+. +..+.+..++... ...+ . ..+...+|.+..
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 467888999999999777666443 2234444444322 1222 2 356778998863
No 176
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=82.31 E-value=7.9 Score=26.36 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=35.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEeCCCChHHH-hhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~------gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~ 139 (212)
.-+.+|+-++|++|++..-.+.+. +-.+....++.....++ +.-+-..+|.++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 467888889999999887777542 23455555655443443 3445678898864
No 177
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=82.09 E-value=9.6 Score=34.33 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=47.0
Q ss_pred cEEEEEeCCChhHHHHHHHHH-------hcCCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCee-e------ecHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ-L------VDSSA 149 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~-------~~gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~-i------~eS~~ 149 (212)
.+++|+.+||++|++..-.+. ..+-.+....+|-...+++. ..+-..+|.+.. +|.. + .+...
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 100 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADG 100 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHH
Confidence 478888899999997654433 23323455555544444442 445567888764 5543 1 35678
Q ss_pred HHHHHHhhcCCC
Q 028229 150 IIDQLDQKLTPK 161 (212)
Q Consensus 150 I~~yL~~~~~~~ 161 (212)
|.+++.+..++.
T Consensus 101 l~~~i~~~~~~~ 112 (462)
T TIGR01130 101 IVKYMKKQSGPA 112 (462)
T ss_pred HHHHHHHhcCCC
Confidence 889998876643
No 178
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=81.41 E-value=4.9 Score=28.60 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=32.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCC--hHHH-hhCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~--~~el-~~~p~~~VP~L~~ 139 (212)
.+..|+.++|++|+...-.+.+. +-.+....+|-.. .+++ ...+-..+|.++.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 57888889999999776555443 2123333344322 3343 3456678898875
No 179
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=81.32 E-value=6.7 Score=31.47 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=35.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC---CCcEEEEeCCCChHHH-hhCCCCcccEEEE--CCeeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYD---IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLV 145 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~g---i~y~~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i~ 145 (212)
-|+.|+.++|+.|+.+.-.|..+- -....+.|+.... ++ ...+-..+|+|+. +|..+.
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEE
Confidence 345567799999997765554332 1234455554332 33 2456778998876 887654
No 180
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=80.00 E-value=8.6 Score=26.82 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=31.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEeCCCChHHHhhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYD------IPYKVVEVNPINKKEIKWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~g------i~y~~v~v~~~~~~el~~~p~~~VP~L~~ 139 (212)
..+++|+.++|++|+...-.+.+.. ..+....+|....+.........+|.+..
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 4567788899999997766664442 12444444433222122223378898875
No 181
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=79.74 E-value=6.5 Score=29.21 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=34.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----cEEEEeCCCChHHHh--hCCCCcccEEEE--CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK--WSEYKKVPILMV--DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~----y~~v~v~~~~~~el~--~~p~~~VP~L~~--~g~ 142 (212)
.++.|+-+||++|+...-.+++..-. .....||-....++. ...-..+|.|.. +|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 46788899999999887777665322 233444443333332 345577898875 554
No 182
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=79.45 E-value=10 Score=27.11 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=32.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC---cEEEEeCCC-ChHHHh-hCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPI-NKKEIK-WSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~---y~~v~v~~~-~~~el~-~~p~~~VP~L~~ 139 (212)
-++.|+.+||++|++..-.|++..-. .....+|.. ..+++. ...-..+|++..
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEE
Confidence 56778889999999887666544211 223344433 333432 445677897764
No 183
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=79.10 E-value=12 Score=28.23 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=36.5
Q ss_pred EEEEEeCCChh--HH--HH--------HHHHHhcCCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee-----ecH
Q 028229 88 VVLYQYEACPF--CN--KV--------KAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL-----VDS 147 (212)
Q Consensus 88 v~Ly~~~~sp~--c~--kv--------r~~L~~~gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i-----~eS 147 (212)
++.|.-++|+. |+ .. ...|+..++ ....||-...+++. ..+-..+|+|.. ||+.+ ...
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v--~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~ 108 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGI--GFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAA 108 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCC--EEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEEeeCCCCH
Confidence 44555556654 87 22 222223454 44444444445664 667788998875 88643 233
Q ss_pred HHHHHHHHh
Q 028229 148 SAIIDQLDQ 156 (212)
Q Consensus 148 ~~I~~yL~~ 156 (212)
..|..||.+
T Consensus 109 ~~l~~~l~~ 117 (120)
T cd03065 109 DTLVEFLLD 117 (120)
T ss_pred HHHHHHHHH
Confidence 456666654
No 184
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=78.50 E-value=2.6 Score=30.33 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=21.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh-----c--CCCcEEEEeCC
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDY-----Y--DIPYKVVEVNP 120 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~-----~--gi~y~~v~v~~ 120 (212)
..+.+|+-++||+|++....+.. . .-.+..+.++.
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNI 48 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECES
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEec
Confidence 35778888999999988776653 1 12455666554
No 185
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=77.18 E-value=3.9 Score=34.80 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=19.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~ 108 (212)
+..|++|.-+.||||+|....+..
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHH
Confidence 345888899999999999877653
No 186
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=76.60 E-value=1.9 Score=32.80 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=15.3
Q ss_pred CCCCcccEEEE--CCeeeecHHHHHHHHHhhcCC
Q 028229 129 SEYKKVPILMV--DGEQLVDSSAIIDQLDQKLTP 160 (212)
Q Consensus 129 ~p~~~VP~L~~--~g~~i~eS~~I~~yL~~~~~~ 160 (212)
+....-|.|.+ +|..++|..+|++|+..-|.+
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 33445588866 789999999999999887764
No 187
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=75.45 E-value=15 Score=25.55 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=32.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEeCCCChHHH-hhCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~----gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~ 139 (212)
-+.+|+.++|+.|+...-.+.+. .-.+....+|....+++ +.-+-..+|.+..
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 46777889999999876555432 11244445554444444 2335567998764
No 188
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=75.17 E-value=4.8 Score=32.50 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh--cCCCcEEEEe
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDY--YDIPYKVVEV 118 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~--~gi~y~~v~v 118 (212)
+..|.+|.-+.||||++....+.+ .++.+.++.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 456888888999999999999875 3444444443
No 189
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=75.11 E-value=4.8 Score=33.83 Aligned_cols=25 Identities=16% Similarity=0.563 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYY 109 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~ 109 (212)
+..|++|.-+.||||+|...-+.+.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH
Confidence 3458889999999999998888765
No 190
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=75.05 E-value=5 Score=30.64 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=27.6
Q ss_pred CCcEEEEEeCCChhHHHH----HHHHHhc-CCCcEEEEeCCCChHH----HhhCCCCcccEEEE
Q 028229 85 PKEVVLYQYEACPFCNKV----KAFLDYY-DIPYKVVEVNPINKKE----IKWSEYKKVPILMV 139 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kv----r~~L~~~-gi~y~~v~v~~~~~~e----l~~~p~~~VP~L~~ 139 (212)
+..+.++.-+|||.|.+. ..++++. +|++..+..| ..++ +..++...||+++.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd--~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD--ENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH--HHHHHTTTTTT-SS--SSEEEE
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec--CChhHHHHHHhCCCeecCEEEE
Confidence 346889999999999854 3344444 5655555433 2223 12378899999986
No 191
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=74.39 E-value=14 Score=26.77 Aligned_cols=67 Identities=21% Similarity=0.411 Sum_probs=41.9
Q ss_pred EEEeCCChhHHHHHHHHHhcCC--CcEEEEeCCCChHH-Hh---hC---CCCcccEEEECCe-eeecHHHHHHHHHhh
Q 028229 90 LYQYEACPFCNKVKAFLDYYDI--PYKVVEVNPINKKE-IK---WS---EYKKVPILMVDGE-QLVDSSAIIDQLDQK 157 (212)
Q Consensus 90 Ly~~~~sp~c~kvr~~L~~~gi--~y~~v~v~~~~~~e-l~---~~---p~~~VP~L~~~g~-~i~eS~~I~~yL~~~ 157 (212)
||+-..||+|......+...+. .++.+++......+ +. ++ ....+-+ ..+|+ ...++.++.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4566779999999999988876 45555552211111 21 22 2233333 44675 899999998876554
No 192
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=15 Score=27.03 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=35.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcE-----EEEeCCCChHHH-hhCCCCcccEEEE--CCeee
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYK-----VVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~-----~v~v~~~~~~el-~~~p~~~VP~L~~--~g~~i 144 (212)
|+-|+-.||+.|+...=.++++-..|. .+++|. -.++ ....-..+|+++. +|+.+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEE
Confidence 444677999999988877776644443 345554 3333 2456678898875 77543
No 193
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=73.27 E-value=10 Score=26.40 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=34.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEeCCCC-hHHH-hhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYY----D--IPYKVVEVNPIN-KKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~----g--i~y~~v~v~~~~-~~el-~~~p~~~VP~L~~ 139 (212)
..+..|+.++|+.|+...-.+.+. + -.+....+|... .+.+ +.-+-..+|.++.
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 357788899999998665555332 2 235566666544 3443 3445678898874
No 194
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=72.91 E-value=17 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=19.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC-CCcEEEEeC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYD-IPYKVVEVN 119 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~g-i~y~~v~v~ 119 (212)
.+..|+..+||.|++..-.|.+.. -.++++-++
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~ 99 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVD 99 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 345566788999997655554331 124444444
No 195
>PLN02309 5'-adenylylsulfate reductase
Probab=70.42 E-value=24 Score=32.85 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=32.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEeCCC-ChHHHh--hCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPI-NKKEIK--WSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~-~~~el~--~~p~~~VP~L~~ 139 (212)
.++.|+-+||++|+...-.+++. +-.+.+..+|-. ...++. ...-..+|+|..
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 57788999999999766555443 223444444433 222332 346678898875
No 196
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=70.10 E-value=21 Score=33.28 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=31.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEeCCCChHHH-hhCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-------DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-------gi~y~~v~v~~~~~~el-~~~p~~~VP~L~~ 139 (212)
.++.|+-+||++|+...-.+++. ++.+-.+++|....... ....-..+|++..
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 46678889999999776555433 23333344443322222 2345568888875
No 197
>PF13728 TraF: F plasmid transfer operon protein
Probab=69.81 E-value=18 Score=29.98 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=36.6
Q ss_pred CcEEEEEeCCChhHHH----HHHHHHhcCCCcEEEEeCCC----------ChHHHhhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVNPI----------NKKEIKWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~k----vr~~L~~~gi~y~~v~v~~~----------~~~el~~~p~~~VP~L~~ 139 (212)
-.+.+|+-..||||.. ++.+-.+.|++...+.+|-. +.+-.+.-+-..+|.|+.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 4588888899999984 55555677998888888721 111123334468998875
No 198
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=67.75 E-value=9.4 Score=31.15 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=34.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC---CcEEEEeCCCChHHHhhCCCCcccEEEE--CCeee
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi---~y~~v~v~~~~~~el~~~p~~~VP~L~~--~g~~i 144 (212)
|+-|+.++|+.|+...-.|..+-- ..+++.++... .....+-..+|+|.. +|..+
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--~~~~~~i~~lPTlliyk~G~~v 165 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--CIPNYPDKNLPTILVYRNGDIV 165 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--hHhhCCCCCCCEEEEEECCEEE
Confidence 455677999999987666655422 23344444221 123457788999886 88654
No 199
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=66.49 E-value=17 Score=27.27 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=35.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCc----EEEEeCCCChHHHh-hCCCCcccEEEE--CCeee
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPY----KVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y----~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i 144 (212)
|.=|+..|||.|+..--.|++.--.| ....||.++-+++. ...-.-+|..+. +|++|
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 44567899999998877777764332 23344544555554 334455776654 66554
No 200
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=66.02 E-value=11 Score=30.69 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=21.9
Q ss_pred EEEEEeCCChhHHHHH----HHHHhcCCCcEEEEeC
Q 028229 88 VVLYQYEACPFCNKVK----AFLDYYDIPYKVVEVN 119 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr----~~L~~~gi~y~~v~v~ 119 (212)
+..|...+||+|++.. .+-++.|+++.-+.+|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 7788889999999864 4444556555555554
No 201
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=64.89 E-value=7.8 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 028229 88 VVLYQYEACPFCNKVKAFLDYY 109 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~ 109 (212)
|.+|.-+.||+|......|.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678888999999988888764
No 202
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.63 E-value=7.1 Score=29.78 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=37.6
Q ss_pred eCCChhHHHH----HHHHHhcCCCcEEEEeCCCChHHHh-------hCCC--CcccEEEE-C--CeeeecHHHHHHHHHh
Q 028229 93 YEACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIK-------WSEY--KKVPILMV-D--GEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 93 ~~~sp~c~kv----r~~L~~~gi~y~~v~v~~~~~~el~-------~~p~--~~VP~L~~-~--g~~i~eS~~I~~yL~~ 156 (212)
-+|||.|.++ ..+|++...+..++.++..+++.++ .+|. .-||+|.- + ++.+.|.......|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4789999965 5566666666666666554444332 2232 35788874 3 3445555555555544
No 203
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=64.57 E-value=12 Score=29.50 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=25.3
Q ss_pred cEEEEEeCCChhHHHHH----HHHHhc-CCCcEEEEeCC
Q 028229 87 EVVLYQYEACPFCNKVK----AFLDYY-DIPYKVVEVNP 120 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr----~~L~~~-gi~y~~v~v~~ 120 (212)
+|++|.-..||||.... .++++. ++.++.+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 47899999999998544 444555 78888887764
No 204
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.86 E-value=14 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=18.9
Q ss_pred CCcEEEEEeCCChhHHHH----HHHHHhcCCCc
Q 028229 85 PKEVVLYQYEACPFCNKV----KAFLDYYDIPY 113 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kv----r~~L~~~gi~y 113 (212)
+-+|.+|+-..||+|+.- +.++.+.+-.+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 345778888999999844 44444545333
No 205
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=63.23 E-value=31 Score=25.41 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=14.3
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLD 107 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~ 107 (212)
.+..|+.++||.|++..-.|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 345556789999997655543
No 206
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=62.22 E-value=15 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=25.3
Q ss_pred eCCChhHHHHHHHHHhc-----CCCcEEEEeCCCChHH---HhhCCCCcccEEEECC
Q 028229 93 YEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE---IKWSEYKKVPILMVDG 141 (212)
Q Consensus 93 ~~~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~~~e---l~~~p~~~VP~L~~~g 141 (212)
..+||.|++-.-.|.+. +..++++-|+...... +.....-..|++.|.+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCc
Confidence 57899999754444332 1223444444333222 2222334578887744
No 207
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=61.97 E-value=21 Score=27.83 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=33.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----cEEEEeCCCChHHHh--hCCCCcccEE-EE-CCe
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK--WSEYKKVPIL-MV-DGE 142 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~----y~~v~v~~~~~~el~--~~p~~~VP~L-~~-~g~ 142 (212)
-+.=|+.+||+.|+..--.|++.--. .....||.++.+++. .+-.+-.|++ +. +|+
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 35567789999999888777665422 223445555555543 2333455666 33 665
No 208
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=61.50 E-value=49 Score=31.61 Aligned_cols=55 Identities=9% Similarity=0.279 Sum_probs=30.7
Q ss_pred EEEEEeCCChhHHHHHHH-H------HhcCCCcEEEEeCCCC--h--HHH-hhCCCCcccEEEE---CCee
Q 028229 88 VVLYQYEACPFCNKVKAF-L------DYYDIPYKVVEVNPIN--K--KEI-KWSEYKKVPILMV---DGEQ 143 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~-L------~~~gi~y~~v~v~~~~--~--~el-~~~p~~~VP~L~~---~g~~ 143 (212)
++-|+-+||+.|++.... + ++.+ ++..+.+|..+ . .++ +..+-..+|.++. ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 456778999999976432 1 1222 35555554322 1 233 3455667898874 4554
No 209
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=60.18 E-value=12 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=18.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~ 108 (212)
+..|++|.-+.||+|++..-.+..
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 456888888999999988776654
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=59.83 E-value=70 Score=26.43 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=42.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC---cEEEEeCCCChHHHhhCCCCcccEEEE--CCeee-----ecHHHHHHHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL-----VDSSAIIDQLDQ 156 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~---y~~v~v~~~~~~el~~~p~~~VP~L~~--~g~~i-----~eS~~I~~yL~~ 156 (212)
.+..|+-+|||-|+...-.|.++--+ +....|+.+ ..-..||.++. +|+.| .+...+..++.+
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~ 92 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRG 92 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHH
Confidence 34555678999999888887766433 444455532 45567897764 77644 245566677766
Q ss_pred hcCC
Q 028229 157 KLTP 160 (212)
Q Consensus 157 ~~~~ 160 (212)
.+..
T Consensus 93 ~~~~ 96 (204)
T PTZ00062 93 WAQK 96 (204)
T ss_pred HcCC
Confidence 5553
No 211
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=58.06 E-value=22 Score=27.29 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=31.2
Q ss_pred cEEEEEeCCChhHHHHHHHHH-------hcCCCcEEEEeCCCChH-HHhhCCCCcccEEEE---CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKK-EIKWSEYKKVPILMV---DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~-------~~gi~y~~v~v~~~~~~-el~~~p~~~VP~L~~---~g~~i 144 (212)
-+..++..+||+|++.....- ..+-.|..+.++.+..+ ....++ .-+|.++. +|+.+
T Consensus 26 vmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi 93 (130)
T cd02960 26 LMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVR 93 (130)
T ss_pred EEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCc
Confidence 456678899999997665431 12225665555432111 122233 45898874 45443
No 212
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=57.61 E-value=7 Score=28.26 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=21.2
Q ss_pred CCCcccHHHHHHHHhh-hccccchhhh
Q 028229 164 ADSPSGDDEEKKWRGY-DLSSIHCCSI 189 (212)
Q Consensus 164 p~~~~~~a~v~~w~~~-d~~l~~~~~p 189 (212)
|.|+.+++++++|+.| ++.+.+.+..
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~ 28 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLL 28 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHH
Confidence 4678889999999999 8888776543
No 213
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=57.47 E-value=42 Score=28.88 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=31.7
Q ss_pred cEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEeCCCC---------hHH-HhhCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVNPIN---------KKE-IKWSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~----~~gi~y~~v~v~~~~---------~~e-l~~~p~~~VP~L~~ 139 (212)
.+..|+-++||+|++..-.|. +.|+.+..+.+|... ... .+.-+-..+|.++.
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 466677789999997665553 346555555554321 112 22445578998874
No 214
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=56.64 E-value=6.1 Score=29.02 Aligned_cols=30 Identities=13% Similarity=-0.037 Sum_probs=24.3
Q ss_pred CCcccHHHHHHHHhh-hccccchhhhhhhhh
Q 028229 165 DSPSGDDEEKKWRGY-DLSSIHCCSIFFPLR 194 (212)
Q Consensus 165 ~~~~~~a~v~~w~~~-d~~l~~~~~p~i~~~ 194 (212)
.||..++++++|+.| ++++.+.+....|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYAD 32 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchh
Confidence 367889999999999 999888777655443
No 215
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=55.11 E-value=43 Score=24.48 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=30.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCC-------cEEEEeC--CCChHHH-hhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIP-------YKVVEVN--PINKKEI-KWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~-------y~~v~v~--~~~~~el-~~~p~~~VP~L~~ 139 (212)
.-+..|+.+||+.|+...-.+....-. +....+| ....+++ +...-..+|.+..
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 356778889999999766555443221 2223333 2222233 3456677898875
No 216
>PTZ00102 disulphide isomerase; Provisional
Probab=54.41 E-value=50 Score=30.07 Aligned_cols=73 Identities=11% Similarity=0.218 Sum_probs=39.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC------cEEEEeCCCChHH-HhhCCCCcccEEEE--CCeee-------ecHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIP------YKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL-------VDSSAI 150 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~------y~~v~v~~~~~~e-l~~~p~~~VP~L~~--~g~~i-------~eS~~I 150 (212)
.++.|+.+||+.|+...-.+.+..-. .....+|....+. ...-.-..+|.++. +|..+ .....|
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l 457 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGF 457 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHH
Confidence 46677789999999887776554222 2233333322211 12223456787764 33211 234567
Q ss_pred HHHHHhhcC
Q 028229 151 IDQLDQKLT 159 (212)
Q Consensus 151 ~~yL~~~~~ 159 (212)
.++|++...
T Consensus 458 ~~~i~~~~~ 466 (477)
T PTZ00102 458 KEFVNKHAT 466 (477)
T ss_pred HHHHHHcCC
Confidence 777777654
No 217
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=53.38 E-value=27 Score=27.96 Aligned_cols=59 Identities=19% Similarity=0.425 Sum_probs=34.2
Q ss_pred EEEEEeCCChhHHHHHH-------HHHhcCCCcEEEEeCCCChHHHh---------hCCCCcccEEEE---CCeeeec
Q 028229 88 VVLYQYEACPFCNKVKA-------FLDYYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVD 146 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~-------~L~~~gi~y~~v~v~~~~~~el~---------~~p~~~VP~L~~---~g~~i~e 146 (212)
+.-.++.+|.+|.+... ..+..+-.|..+.+|.+.++++. +++.|.-|.-+. +|++++.
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 44557899999985442 33444557888888988877632 457888887664 7887764
No 218
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=51.90 E-value=17 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=18.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHH
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLD 107 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~ 107 (212)
+..|+.|.-..||+|.+..-.+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHH
Confidence 45678888888999998777664
No 219
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=51.52 E-value=19 Score=23.66 Aligned_cols=63 Identities=16% Similarity=0.031 Sum_probs=31.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIID 152 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~ 152 (212)
++||....-.-+..++-.|++.||++...+-..... .. ..|....+.|.+.....-+...|++
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~-~g-~~g~~~~~~v~V~~~d~~~A~~il~ 63 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY-AG-EPGTGGQVEVYVPEEDYERAREILE 63 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----S--SSSEEEEEEGGGHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh-hc-ccCccCceEEEECHHHHHHHHHHHH
Confidence 468888877778999999999999998865432211 00 1233223555554444444555544
No 220
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=50.88 E-value=23 Score=27.82 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=21.2
Q ss_pred EEEEEeCCChhHHHHHHHHH----hcCCCcEEEEe
Q 028229 88 VVLYQYEACPFCNKVKAFLD----YYDIPYKVVEV 118 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~----~~gi~y~~v~v 118 (212)
|.+|.-..||||.-....|. +.+++++.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46888899999996554444 44666665554
No 221
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=50.88 E-value=29 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=23.1
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCCcEEEEe
Q 028229 87 EVVLYQYEACPFCNKVKAFL----DYYDIPYKVVEV 118 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L----~~~gi~y~~v~v 118 (212)
+|.+|+-..||||.-...-| ...+++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 58899999999998654444 456676666655
No 222
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=50.26 E-value=1.4e+02 Score=27.32 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=55.1
Q ss_pred CCCcEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~-~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+ +......+.++.+|++.|++...+...-..-++++..+...+=++.-. . ....+.+||+++|+-+.
T Consensus 171 ~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~-~---~~~~~a~~Le~~fGiP~ 246 (421)
T cd01976 171 TPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCY-R---SMNYIARMMEEKYGIPW 246 (421)
T ss_pred CCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECc-H---HHHHHHHHHHHHhCCcE
Confidence 356788876 333446788999999999998854433234455665554443332211 0 01357889999998775
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
+..++..-...+.|+.-
T Consensus 247 ~~~~p~Gi~~t~~~l~~ 263 (421)
T cd01976 247 MEYNFFGPTKIAESLRK 263 (421)
T ss_pred EecccCCHHHHHHHHHH
Confidence 32235555666666644
No 223
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=49.80 E-value=22 Score=27.01 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.1
Q ss_pred CCcEEEEEeCCChhHHHHHHHH
Q 028229 85 PKEVVLYQYEACPFCNKVKAFL 106 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L 106 (212)
+..|++|.-..||+|.+....+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHH
Confidence 4578999999999999876555
No 224
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=48.72 E-value=40 Score=23.40 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=34.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCC----CcEEEEeCCCChHHH-hhCCCC--cccEEEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEI-KWSEYK--KVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi----~y~~v~v~~~~~~el-~~~p~~--~VP~L~~ 139 (212)
..+.+|..++|+.|...+-.|++..- .+....+|....+++ ..-+.. .+|.+..
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 35677777899999988888866432 245556665444443 233444 8998875
No 225
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=48.15 E-value=49 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.311 Sum_probs=16.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY 109 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~ 109 (212)
.+..|...+||.|.+..-.|...
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHH
Confidence 46677788999999665555443
No 226
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=46.92 E-value=89 Score=23.75 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=33.8
Q ss_pred cEEEEEeCCC------h--------hHHHHHHHHHhcCCCcEEEEeCCCCh-----HH----HhhCCCCcccEEEECCee
Q 028229 87 EVVLYQYEAC------P--------FCNKVKAFLDYYDIPYKVVEVNPINK-----KE----IKWSEYKKVPILMVDGEQ 143 (212)
Q Consensus 87 ~v~Ly~~~~s------p--------~c~kvr~~L~~~gi~y~~v~v~~~~~-----~e----l~~~p~~~VP~L~~~g~~ 143 (212)
+|.||.-..| . .-..+-..|+.+|++.+...+..... +. ++..+...+|++++||+.
T Consensus 3 ~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGei 82 (123)
T PF06953_consen 3 KIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEI 82 (123)
T ss_dssp EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEE
T ss_pred ceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEE
Confidence 5778876653 1 11233445688899988888753221 11 346788999999999986
Q ss_pred e
Q 028229 144 L 144 (212)
Q Consensus 144 i 144 (212)
+
T Consensus 83 v 83 (123)
T PF06953_consen 83 V 83 (123)
T ss_dssp E
T ss_pred E
Confidence 5
No 227
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.51 E-value=65 Score=23.79 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=43.1
Q ss_pred EEEEEeCCChhH------HHHHHHHHhcCCCcEEEEeCCCC----------hHHHh-hCCCCcccEEEECCeeeecHHHH
Q 028229 88 VVLYQYEACPFC------NKVKAFLDYYDIPYKVVEVNPIN----------KKEIK-WSEYKKVPILMVDGEQLVDSSAI 150 (212)
Q Consensus 88 v~Ly~~~~sp~c------~kvr~~L~~~gi~y~~v~v~~~~----------~~el~-~~p~~~VP~L~~~g~~i~eS~~I 150 (212)
|++|....++.. ..+-.+|+...|+|+.+++.... .++.+ .++.-.-|.|+.+++..+|-..-
T Consensus 4 irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F 83 (108)
T KOG4023|consen 4 IRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELF 83 (108)
T ss_pred eEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHH
Confidence 566766655543 36778888889999999875321 11233 56667789998877766665554
Q ss_pred HHHH
Q 028229 151 IDQL 154 (212)
Q Consensus 151 ~~yL 154 (212)
.+-.
T Consensus 84 ~ea~ 87 (108)
T KOG4023|consen 84 FEAV 87 (108)
T ss_pred HHHH
Confidence 4433
No 228
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=46.41 E-value=43 Score=25.06 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=12.2
Q ss_pred EEEEEeC-CChhHHHHHHHHH
Q 028229 88 VVLYQYE-ACPFCNKVKAFLD 107 (212)
Q Consensus 88 v~Ly~~~-~sp~c~kvr~~L~ 107 (212)
+..+... +||.|.+-.-.|.
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~ 52 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLN 52 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHH
Confidence 3334445 7999996664443
No 229
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=46.35 E-value=1.1e+02 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=13.7
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLD 107 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~ 107 (212)
+..|..++||.|+...-.|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 44556788999997655543
No 230
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=46.02 E-value=1.8e+02 Score=27.44 Aligned_cols=92 Identities=11% Similarity=0.008 Sum_probs=56.6
Q ss_pred CCCcEEEEEeC-----CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 84 VPKEVVLYQYE-----ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 84 ~~~~v~Ly~~~-----~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
.++.|.|.+.. .....+.++.+|+..|+.+..+.-....-.+++..|...+=++.... ....+++||+++|
T Consensus 162 ~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~~~----~g~~~A~~Le~~f 237 (513)
T CHL00076 162 DKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPYRE----VGLMTAKYLEKEF 237 (513)
T ss_pred CCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEechh----hhHHHHHHHHHHh
Confidence 45678888533 23467899999999999988654432334456655555544433211 1146889999999
Q ss_pred CCCCCCCCcccHHHHHHHHhh
Q 028229 159 TPKRKADSPSGDDEEKKWRGY 179 (212)
Q Consensus 159 ~~~~lp~~~~~~a~v~~w~~~ 179 (212)
+.+.+...|..-.....|+.-
T Consensus 238 giP~i~~~PiGi~~T~~fLr~ 258 (513)
T CHL00076 238 GMPYISTTPMGIVDTAECIRQ 258 (513)
T ss_pred CCCeEeeccCCHHHHHHHHHH
Confidence 887532235455556666543
No 231
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=46.02 E-value=48 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=15.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q 028229 87 EVVLYQYEACPFCNKVKAFLDY 108 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~ 108 (212)
.+..|..++||.|++..-.|.+
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHH
Confidence 3455667889999976555544
No 232
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=44.97 E-value=81 Score=26.96 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=36.3
Q ss_pred CcEEEEEeCCChhHH----HHHHHHHhcCCCcEEEEeCCCChH----------HHhhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCN----KVKAFLDYYDIPYKVVEVNPINKK----------EIKWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~----kvr~~L~~~gi~y~~v~v~~~~~~----------el~~~p~~~VP~L~~ 139 (212)
-.+.+|+-..||||. .++.+-+..|++...+.+|-...+ ..+.-+-..+|.++.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 468888889999998 456666778998888888632111 122233357888874
No 233
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=44.33 E-value=38 Score=24.30 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHhc-----CCCcEEEEeCCCChHHHh---hCCCCcccEEEECC
Q 028229 95 ACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK---WSEYKKVPILMVDG 141 (212)
Q Consensus 95 ~sp~c~kvr~~L~~~-----gi~y~~v~v~~~~~~el~---~~p~~~VP~L~~~g 141 (212)
+||.|.+..-.|.+. ...++++-++.....+++ ..-.-..|++.|.+
T Consensus 37 ~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~ 91 (124)
T PF00578_consen 37 WCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPD 91 (124)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETT
T ss_pred CccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcc
Confidence 699998666555442 223444444433333321 11125667777744
No 234
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=44.00 E-value=25 Score=26.01 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=21.2
Q ss_pred ccEEEE-CCeeeecHHHHHHHHHhhcC
Q 028229 134 VPILMV-DGEQLVDSSAIIDQLDQKLT 159 (212)
Q Consensus 134 VP~L~~-~g~~i~eS~~I~~yL~~~~~ 159 (212)
+|.++. ||.++.+|..|+++..+++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 466664 99999999999999977654
No 235
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=43.98 E-value=1.1e+02 Score=27.39 Aligned_cols=71 Identities=10% Similarity=0.217 Sum_probs=38.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CC--CcEEEEeCCCChHHHhhCCCCcccEEEE--CCee-----e---ecHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYY-----DI--PYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQ-----L---VDSSA 149 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~-----gi--~y~~v~v~~~~~~el~~~p~~~VP~L~~--~g~~-----i---~eS~~ 149 (212)
.++.|+.+||+.|....-.+++. ++ .+....+|.... +...-.-..+|.+.. +|.. . .....
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-~~~~~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~ 445 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-DVPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLED 445 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-ccCCCCccccCEEEEEeCCCCcCceEecCcCCHHH
Confidence 46678889999999776665443 21 233344443211 111123456787765 3321 1 24456
Q ss_pred HHHHHHhhc
Q 028229 150 IIDQLDQKL 158 (212)
Q Consensus 150 I~~yL~~~~ 158 (212)
|.++|.+..
T Consensus 446 l~~~l~~~~ 454 (462)
T TIGR01130 446 FSKFIAKHA 454 (462)
T ss_pred HHHHHHhcC
Confidence 667766554
No 236
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=42.41 E-value=1.5e+02 Score=22.57 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=13.8
Q ss_pred cEEEEEeCCChhHHHHHHHH
Q 028229 87 EVVLYQYEACPFCNKVKAFL 106 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L 106 (212)
.+..|..++||+|+...-.|
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEEECCcCHHHHHHHHHH
Confidence 45566778999998754444
No 237
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.35 E-value=39 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=20.7
Q ss_pred cEEEEEeCCChhHHHHHHHH----Hhc--CCCcEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFL----DYY--DIPYKVVE 117 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L----~~~--gi~y~~v~ 117 (212)
+|.+|.-+.||+|......| ++. +++++++.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 47889999999998554444 343 55555543
No 238
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.94 E-value=2.1e+02 Score=26.60 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=50.0
Q ss_pred CCCcEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~~-~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+. ......+.++.+|++.|+.+..+......-++++..+...+=++.. + .......+||+++|+.+.
T Consensus 190 ~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~-~---~~~~~~A~~L~erfGiP~ 265 (475)
T PRK14478 190 TPYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMMVC-S---GAMINLARKMEERYGIPF 265 (475)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEEEc-H---HHHHHHHHHHHHHhCCCE
Confidence 3567888763 2234567899999999998875433222234444334333222110 0 011346777777777664
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
+...+..-.....|+.-
T Consensus 266 ~~~~p~G~~~T~~~l~~ 282 (475)
T PRK14478 266 FEGSFYGIEDTSDSLRQ 282 (475)
T ss_pred EecCCCcHHHHHHHHHH
Confidence 33334445555666554
No 239
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.07 E-value=33 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEeCCChhHHHHHHHH----Hhc----CCCcEEEEe
Q 028229 88 VVLYQYEACPFCNKVKAFL----DYY----DIPYKVVEV 118 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L----~~~----gi~y~~v~v 118 (212)
|.+|.-..||||.-....| ++. ++.++++.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 4688889999999555444 444 455555444
No 240
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=39.94 E-value=65 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.643 Sum_probs=23.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEeC
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVN 119 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~----~gi~y~~v~v~ 119 (212)
..+..|+.++||+|++-.-.|.+ .|+.+..+.+|
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 45888888999999977666543 35554445554
No 241
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=39.12 E-value=76 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=18.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-CCcEEEEeC
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYD-IPYKVVEVN 119 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~g-i~y~~v~v~ 119 (212)
+..|...+||+|++-.-.|.+.. -.++++-++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~ 104 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMN 104 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 44566789999987655543331 124455554
No 242
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=38.30 E-value=2.6e+02 Score=26.04 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=53.0
Q ss_pred CCcEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCC
Q 028229 85 PKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (212)
Q Consensus 85 ~~~v~Ly~-~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~l 163 (212)
++.|.|.+ +......+.++.+|++.|+++..+.-....-.+++..+..++=+++-. . ....+.+||+++|+-+.+
T Consensus 207 ~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lniv~~~-~---~~~~~A~~Le~~fGiP~~ 282 (466)
T TIGR01282 207 PYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNLIHCY-R---SMNYISRHMEEKYGIPWM 282 (466)
T ss_pred CCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEECh-H---HHHHHHHHHHHHhCCceE
Confidence 56787775 444556789999999999998754432223445555555444333211 0 113578888888887643
Q ss_pred CCCcccHHHHHHHHhh
Q 028229 164 ADSPSGDDEEKKWRGY 179 (212)
Q Consensus 164 p~~~~~~a~v~~w~~~ 179 (212)
..++..-....+|+.-
T Consensus 283 ~~~~~Gi~~T~~~Lr~ 298 (466)
T TIGR01282 283 EYNFFGPTKIAESLRK 298 (466)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 2224444555555543
No 243
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=37.18 E-value=61 Score=19.03 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCCcccEEEECCeeeecHHHHHHHHHh
Q 028229 130 EYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (212)
Q Consensus 130 p~~~VP~L~~~g~~i~eS~~I~~yL~~ 156 (212)
-.|.+|....++..++...+|.+|+++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLEQ 49 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHhC
Confidence 457788877788889999999999863
No 244
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=36.08 E-value=90 Score=24.27 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=15.4
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDY 108 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~ 108 (212)
+..|..++||.|++..-.|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 344566889999988777754
No 245
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=35.76 E-value=29 Score=25.06 Aligned_cols=25 Identities=4% Similarity=-0.113 Sum_probs=18.7
Q ss_pred cccHHHHHHHHhh-hccccchhhhhh
Q 028229 167 PSGDDEEKKWRGY-DLSSIHCCSIFF 191 (212)
Q Consensus 167 ~~~~a~v~~w~~~-d~~l~~~~~p~i 191 (212)
|.+++++++|+.| ++.+.+.+...+
T Consensus 1 p~~ra~~~~w~~~~~~~~~~~~~~~~ 26 (121)
T cd03191 1 PKKRARVRALALIIACDIHPLNNLRV 26 (121)
T ss_pred ChhHHHHHHHHHHHHccCCccccHHH
Confidence 3568999999999 888876544433
No 246
>PRK09266 hypothetical protein; Provisional
Probab=35.74 E-value=58 Score=27.52 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCcEEEEeCCCC---hHHHh-hC-CCCcccEEEECCeeeecHHHHHHHHHhhcCCC
Q 028229 101 KVKAFLDYYDIPYKVVEVNPIN---KKEIK-WS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (212)
Q Consensus 101 kvr~~L~~~gi~y~~v~v~~~~---~~el~-~~-p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~ 161 (212)
.+...+...|+++++..+++.+ .+++. .| -.+-+|+..+||..+.+...+.+.|.+.|..+
T Consensus 196 ~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~~ 261 (266)
T PRK09266 196 LLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEAE 261 (266)
T ss_pred HHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHhc
Confidence 3444566779999998887533 23333 34 46899999999988875567888887777543
No 247
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=35.63 E-value=19 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=19.8
Q ss_pred CcccHHHHHHHHhh-hccccchhhhhh
Q 028229 166 SPSGDDEEKKWRGY-DLSSIHCCSIFF 191 (212)
Q Consensus 166 ~~~~~a~v~~w~~~-d~~l~~~~~p~i 191 (212)
|+.+++++++|+.| ++.+.+.+...+
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~ 27 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAF 27 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999 988776554433
No 248
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=35.38 E-value=36 Score=23.09 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=31.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEeCCCChHH-HhhCCCCcccEEEE
Q 028229 87 EVVLYQYEACPFCNKVKAFLDY-------YDIPYKVVEVNPINKKE-IKWSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~-------~gi~y~~v~v~~~~~~e-l~~~p~~~VP~L~~ 139 (212)
-++.++..+|++|++....+.. .+-.|..+.+|...... ......+ +|.++.
T Consensus 20 vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~-~P~~~~ 79 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQG-YPTFFF 79 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCS-SSEEEE
T ss_pred EEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCcc-CCEEEE
Confidence 4677789999999977665522 23457777776544332 2221133 888763
No 249
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=34.49 E-value=1.3e+02 Score=26.87 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=43.5
Q ss_pred CcEEE--EEeCCChhHHHHHHHHHhcCCCcE-------EE--EeCCCChHHHh-hCCCCcccEEEE--CCeeee------
Q 028229 86 KEVVL--YQYEACPFCNKVKAFLDYYDIPYK-------VV--EVNPINKKEIK-WSEYKKVPILMV--DGEQLV------ 145 (212)
Q Consensus 86 ~~v~L--y~~~~sp~c~kvr~~L~~~gi~y~-------~v--~v~~~~~~el~-~~p~~~VP~L~~--~g~~i~------ 145 (212)
+.+++ |+..||+|+++.+-.++|.--.|+ .+ .||-.....+. ..--.+-|+|.+ +|..+.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~ 92 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQ 92 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccc
Confidence 45544 566899999999988887643322 11 22322222332 333456677765 786664
Q ss_pred -cHHHHHHHHHhhcC
Q 028229 146 -DSSAIIDQLDQKLT 159 (212)
Q Consensus 146 -eS~~I~~yL~~~~~ 159 (212)
.-.+.++|++++..
T Consensus 93 RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 93 RSVEALIEFIEKQLS 107 (375)
T ss_pred hhHHHHHHHHHHHhc
Confidence 23567788877654
No 250
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.96 E-value=2.3e+02 Score=25.23 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEeCCCChHHHh-hCCCCcccEEEE--CC-e------eeecHH
Q 028229 85 PKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DG-E------QLVDSS 148 (212)
Q Consensus 85 ~~~v~Ly~~~~sp~c~kvr~~L~~~------gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g-~------~i~eS~ 148 (212)
...++.++.|+|++|++..--.+.. +..+++..++-.....+. ....+..|.++. +| . ..-++.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~ 242 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSD 242 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHH
Confidence 3457778889999999762222221 344455555432222222 334455555543 22 2 357889
Q ss_pred HHHHHHHhhcCC
Q 028229 149 AIIDQLDQKLTP 160 (212)
Q Consensus 149 ~I~~yL~~~~~~ 160 (212)
.|++|+.+....
T Consensus 243 ~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 243 SIVSFVEKKERR 254 (383)
T ss_pred HHHHHHHhhcCC
Confidence 999999988776
No 251
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=33.80 E-value=97 Score=22.62 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=13.6
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 028229 88 VVLYQYEACPFCNKVKAFLDY 108 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~ 108 (212)
+..|...+||.|.+-.-.|.+
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 444556789999876544433
No 252
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=33.23 E-value=3.4e+02 Score=25.07 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=49.9
Q ss_pred CCCcEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~-~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+ +......+.++.+|++.|+......-....-.+++..+..++=++.. +. ....+.++|+++|+-+.
T Consensus 198 ~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~-~~---~~~~~A~~Le~~~GiP~ 273 (457)
T TIGR01284 198 TEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRC-AR---SANYIANELEERYGIPR 273 (457)
T ss_pred CCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEC-hH---HHHHHHHHHHHHhCCCe
Confidence 356788876 33335567899999999998875443222334454444333222211 10 11356777777777664
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
+..++..-.....|+.-
T Consensus 274 ~~~~~~G~~~T~~~l~~ 290 (457)
T TIGR01284 274 LDIDFFGFEYCAKNLRK 290 (457)
T ss_pred EecccCCHHHHHHHHHH
Confidence 32223444455555433
No 253
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.74 E-value=3.7e+02 Score=24.27 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=48.9
Q ss_pred CCcEEEEEeC-CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCC
Q 028229 85 PKEVVLYQYE-ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (212)
Q Consensus 85 ~~~v~Ly~~~-~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~l 163 (212)
++.|.|.+.. .-.....++.+|++.|+++..+......-+++...+...+=++... .......++|+++|+.+.+
T Consensus 158 ~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~----~~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNVVQCS----KSMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEEEEch----hHHHHHHHHHHHHhCCCeE
Confidence 5678887632 2334578999999999987765433223344443333222111100 0113457788888776643
Q ss_pred CCCcccHHHHHHHHhh
Q 028229 164 ADSPSGDDEEKKWRGY 179 (212)
Q Consensus 164 p~~~~~~a~v~~w~~~ 179 (212)
...+..-...+.|+.-
T Consensus 234 ~~~p~G~~~t~~~l~~ 249 (410)
T cd01968 234 EVSFYGIRDTSKSLRN 249 (410)
T ss_pred ecCcCcHHHHHHHHHH
Confidence 2223445555666544
No 254
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.10 E-value=48 Score=23.01 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEe
Q 028229 96 CPFCNKVKAFLDYYDIPYKVVEV 118 (212)
Q Consensus 96 sp~c~kvr~~L~~~gi~y~~v~v 118 (212)
-+|++|+...|+..|++|+..+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 46999999999999999998754
No 255
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.02 E-value=3.7e+02 Score=23.99 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=48.2
Q ss_pred CCCcEEEEEeCC-ChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQYEA-CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~~~~-sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+... -.....++.+|++.|+.+..+.-.-..-+++...+...+=++... .......++|+++++.+.
T Consensus 159 ~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~----~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLVHCS----RSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEEECh----HHHHHHHHHHHHhhCCCE
Confidence 456788877543 235688999999999988865542223334443333322221111 012445667777766553
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
....+..-....+|+..
T Consensus 235 ~~~~p~G~~~t~~~l~~ 251 (406)
T cd01967 235 MEVNFYGFEDTSESLRK 251 (406)
T ss_pred EEecCCcHHHHHHHHHH
Confidence 21123334444444433
No 256
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=31.98 E-value=1.4e+02 Score=24.26 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCcEEEEEeCCChhHHHHHHHH-HhcCCCcEEEEeCCCChHHHh-hCCC
Q 028229 84 VPKEVVLYQYEACPFCNKVKAFL-DYYDIPYKVVEVNPINKKEIK-WSEY 131 (212)
Q Consensus 84 ~~~~v~Ly~~~~sp~c~kvr~~L-~~~gi~y~~v~v~~~~~~el~-~~p~ 131 (212)
.+++|++...- -.|.+.+..+| .++|-++++..-|...-+|++ +||.
T Consensus 17 ~n~piv~IDNY-DSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~ 65 (223)
T KOG0026|consen 17 QNGPIIVIDNY-DSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPR 65 (223)
T ss_pred ccCCEEEEecc-cchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCC
Confidence 44556665544 34899999888 888988887665554555554 5554
No 257
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=31.72 E-value=73 Score=27.34 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=35.8
Q ss_pred CcEEEEEeCCChhHHH----HHHHHHhcCCCcEEEEeCCCCh-------H---HHhhCCCCcccEEEE
Q 028229 86 KEVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVNPINK-------K---EIKWSEYKKVPILMV 139 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~k----vr~~L~~~gi~y~~v~v~~~~~-------~---el~~~p~~~VP~L~~ 139 (212)
-.+.+|+-..||+|.+ ++.+-+..|++...+.+|...- . ..+.-+-..+|.++.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 3578888899999995 4555577799888888873211 1 112224467898874
No 258
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.41 E-value=4.2e+02 Score=24.37 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=50.8
Q ss_pred CCCcEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~~-~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+. ......+.++.+|++.|++...+.-....-++++..+...+=++... .....+.++|+++|+.+.
T Consensus 196 ~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~----~~~~~~a~~L~e~~GiP~ 271 (456)
T TIGR01283 196 TVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCS----KSMINLARKMEEKYGIPY 271 (456)
T ss_pred CCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECH----hHHHHHHHHHHHHcCCCE
Confidence 3567888763 32334578999999999998875443223345544443333222110 012457777777777654
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
+...+..-....+|+.-
T Consensus 272 ~~~~~~G~~~T~~~L~~ 288 (456)
T TIGR01283 272 FEGSFYGIEDTSKALRD 288 (456)
T ss_pred EecCCCcHHHHHHHHHH
Confidence 32233444555555544
No 259
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=30.56 E-value=4.4e+02 Score=24.40 Aligned_cols=92 Identities=8% Similarity=0.001 Sum_probs=54.7
Q ss_pred CCCcEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~-~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+ +..-...+.++.+|++.|++...+.-.-..-+++...+...+=++. .+.. ...+.+||+++|+.+.
T Consensus 200 ~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v~~~~~g~~t~~ei~~~~~A~lnlv~-~~~~---~~~~A~~Leer~GiP~ 275 (461)
T TIGR01860 200 SEYTINVIGDYNIQGDTQVLQKYWDKMGIQVIAHFTGNGTYDDLRCMHRAQLNVVN-CARS---AGYIANELKKRYGIPR 275 (461)
T ss_pred CCCcEEEECCCCCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHhcccCcEEEEE-CchH---HHHHHHHHHHHhCCCe
Confidence 356788876 3333446789999999999987544322234455544444432222 1111 1237899999998875
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
+..++..-....+|+.-
T Consensus 276 ~~~~p~Gi~~T~~~L~~ 292 (461)
T TIGR01860 276 LDVDTWGFNYMAEALRK 292 (461)
T ss_pred ecCCcCCHHHHHHHHHH
Confidence 42235556666666644
No 260
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=29.68 E-value=1e+02 Score=27.49 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=42.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC-------CcEEEEeCCCChHHHh-hCCCCcccEEEE--CCeee-----ecHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFLDYYDI-------PYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL-----VDSSAIID 152 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~gi-------~y~~v~v~~~~~~el~-~~p~~~VP~L~~--~g~~i-----~eS~~I~~ 152 (212)
.+=|+.|||.+|+|..-.-.+-|. |.++-.+|-..-+.+. .-+-..-|+|.. +|..+ -+-.+|++
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~iie 126 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAIIE 126 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHHHHHH
Confidence 456778999999987766666554 4444434322222232 223444566654 55544 46788998
Q ss_pred HHHhhcC
Q 028229 153 QLDQKLT 159 (212)
Q Consensus 153 yL~~~~~ 159 (212)
+..+.-+
T Consensus 127 FAhR~a~ 133 (468)
T KOG4277|consen 127 FAHRCAA 133 (468)
T ss_pred HHHhccc
Confidence 8665543
No 261
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=29.64 E-value=2.4e+02 Score=21.05 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=37.2
Q ss_pred cEEEEEe--CCCh---hHHHHHHHHHhcC--CCcEEEEeCC---CChHHHh-hCCCC--cccEEEE--CCe---ee----
Q 028229 87 EVVLYQY--EACP---FCNKVKAFLDYYD--IPYKVVEVNP---INKKEIK-WSEYK--KVPILMV--DGE---QL---- 144 (212)
Q Consensus 87 ~v~Ly~~--~~sp---~c~kvr~~L~~~g--i~y~~v~v~~---~~~~el~-~~p~~--~VP~L~~--~g~---~i---- 144 (212)
-++-|+- |||. .|.+..--+.... |.+-.++++. ....++. ..+-. ..|+|.. +|. .+
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G 100 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSG 100 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCC
Confidence 4566666 8888 7777765554433 4444444432 1122342 33434 6888764 552 11
Q ss_pred --ecHHHHHHHHHhh
Q 028229 145 --VDSSAIIDQLDQK 157 (212)
Q Consensus 145 --~eS~~I~~yL~~~ 157 (212)
-...+|+.|+.++
T Consensus 101 ~~r~~~~lv~~v~~~ 115 (116)
T cd03007 101 ADVTVDALQRFLKGN 115 (116)
T ss_pred CcccHHHHHHHHHhc
Confidence 2245677776553
No 262
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=29.35 E-value=52 Score=22.02 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.1
Q ss_pred EeCCChhHHHHHHHHHhcC
Q 028229 92 QYEACPFCNKVKAFLDYYD 110 (212)
Q Consensus 92 ~~~~sp~c~kvr~~L~~~g 110 (212)
..++||+|.+..-.|.+..
T Consensus 40 ~~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELA 58 (127)
T ss_pred EcCcCHHHHhhchhHHHHH
Confidence 4899999998877776654
No 263
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=29.20 E-value=35 Score=24.02 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=18.3
Q ss_pred cHHHHHHHHhh-hccccchhhhhh
Q 028229 169 GDDEEKKWRGY-DLSSIHCCSIFF 191 (212)
Q Consensus 169 ~~a~v~~w~~~-d~~l~~~~~p~i 191 (212)
+++++++|+.| ++.+.+.+....
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~ 25 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLF 25 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcc
Confidence 58999999999 888887665443
No 264
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=28.87 E-value=4.6e+02 Score=24.07 Aligned_cols=92 Identities=11% Similarity=-0.017 Sum_probs=52.7
Q ss_pred CCCcEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCC
Q 028229 84 VPKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (212)
Q Consensus 84 ~~~~v~Ly~~-~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~ 162 (212)
.++.|.|.+. ..-.....++.+|++.|++...+......-++++..|...+= |+..+. ......++|+++|+.+.
T Consensus 190 ~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~ln-iv~~~~---~~~~~A~~L~er~GiP~ 265 (443)
T TIGR01862 190 TEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLN-LVHCAR---SANYIANELEERYGIPW 265 (443)
T ss_pred CCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEE-EEEChH---HHHHHHHHHHHHhCCCe
Confidence 3567888763 223467799999999999987654332234455544444331 221111 12456788888887764
Q ss_pred CCCCcccHHHHHHHHhh
Q 028229 163 KADSPSGDDEEKKWRGY 179 (212)
Q Consensus 163 lp~~~~~~a~v~~w~~~ 179 (212)
+..++..-...+.|+.-
T Consensus 266 ~~~~p~G~~~t~~~l~~ 282 (443)
T TIGR01862 266 MKIDFFGFTYTAESLRA 282 (443)
T ss_pred EecccCCHHHHHHHHHH
Confidence 32223445556666544
No 265
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=28.52 E-value=1.2e+02 Score=22.18 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=26.2
Q ss_pred CcEEEEEe--CCChhHHHHHHHHHh-------cCCCcEEEEeCCCChHHHh----hCCCCcccEEEEC
Q 028229 86 KEVVLYQY--EACPFCNKVKAFLDY-------YDIPYKVVEVNPINKKEIK----WSEYKKVPILMVD 140 (212)
Q Consensus 86 ~~v~Ly~~--~~sp~c~kvr~~L~~-------~gi~y~~v~v~~~~~~el~----~~p~~~VP~L~~~ 140 (212)
+.+.|+.+ .+||.|..-...|.+ .|+ +.+-+..+....++ ..+...+|++.|.
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~--~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGA--EVLGVSVDSPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHhcccCCCceEEECC
Confidence 44445444 579999865444333 344 44444433333221 2234567777653
No 266
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=28.50 E-value=1.3e+02 Score=22.39 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=10.0
Q ss_pred eCCChhHHHHHHHHH
Q 028229 93 YEACPFCNKVKAFLD 107 (212)
Q Consensus 93 ~~~sp~c~kvr~~L~ 107 (212)
..+||.|.+..-.|.
T Consensus 38 ~~~c~~C~~~~~~l~ 52 (149)
T cd03018 38 LAFTPVCTKELCALR 52 (149)
T ss_pred CCCCccHHHHHHHHH
Confidence 578999986544443
No 267
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=28.16 E-value=47 Score=23.43 Aligned_cols=22 Identities=9% Similarity=-0.165 Sum_probs=17.8
Q ss_pred cHHHHHHHHhh-hccccchhhhh
Q 028229 169 GDDEEKKWRGY-DLSSIHCCSIF 190 (212)
Q Consensus 169 ~~a~v~~w~~~-d~~l~~~~~p~ 190 (212)
+++++++|+.| ++.+.+.+...
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~ 23 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQA 23 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHH
Confidence 47899999999 89888766544
No 268
>PF12728 HTH_17: Helix-turn-helix domain
Probab=27.83 E-value=1.1e+02 Score=18.58 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=24.3
Q ss_pred hCCCCcccEEEECCeeeecHHHHHHHHHhh
Q 028229 128 WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 128 ~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
+--.+.+|.+..++...+.-.+|.+|++++
T Consensus 21 ~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 21 WIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 334578888888888999999999999864
No 269
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.09 E-value=1.3e+02 Score=28.13 Aligned_cols=69 Identities=19% Similarity=0.386 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHhcC--C-CcEEEEeC--CCChHH-H----hhCC--CCcccEEE----E-C--CeeeecHHHHHHHH
Q 028229 94 EACPFCNKVKAFLDYYD--I-PYKVVEVN--PINKKE-I----KWSE--YKKVPILM----V-D--GEQLVDSSAIIDQL 154 (212)
Q Consensus 94 ~~sp~c~kvr~~L~~~g--i-~y~~v~v~--~~~~~e-l----~~~p--~~~VP~L~----~-~--g~~i~eS~~I~~yL 154 (212)
..|||-.|+.++..++. + +|.++.+- |+.+++ + +.|+ .++-|++. | + |.-|+++++-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 46999999999998874 4 38877763 445554 2 2454 47889995 3 4 45799999999999
Q ss_pred HhhcCCCC
Q 028229 155 DQKLTPKR 162 (212)
Q Consensus 155 ~~~~~~~~ 162 (212)
...|+-.+
T Consensus 82 ~~yyg~~s 89 (452)
T cd05295 82 ESYYGITS 89 (452)
T ss_pred HHHhCccc
Confidence 99998654
No 270
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=26.88 E-value=5.3e+02 Score=24.11 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=43.1
Q ss_pred CCCcEEEEE-----eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 84 VPKEVVLYQ-----YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 84 ~~~~v~Ly~-----~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
.++.|.|.+ +.+...++.++.+|+..|+++..+.-.-..-.+++..|...+=+.. +..+.++|+++|
T Consensus 151 ~~~~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~l~~A~~nIv~--------~~~~a~~L~e~~ 222 (468)
T TIGR02014 151 AKPRVNIIGPTYGCFNMPSDLAEIRRLVEGIGAEVAHVYPLGSHLAEITKLKNADANIVM--------YREFGRGLAEKL 222 (468)
T ss_pred CCCeEEEECCCcCcCCChhHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHhhccCcEEEee--------cHHHHHHHHHHH
Confidence 456788886 4556788999999999999987654321223344433433322222 122667777777
Q ss_pred CCCC
Q 028229 159 TPKR 162 (212)
Q Consensus 159 ~~~~ 162 (212)
+.+.
T Consensus 223 GvP~ 226 (468)
T TIGR02014 223 GKPY 226 (468)
T ss_pred CCCc
Confidence 6654
No 271
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=2.6e+02 Score=20.46 Aligned_cols=62 Identities=21% Similarity=0.466 Sum_probs=36.7
Q ss_pred cEEEEEeCC-ChhH------HHHHHHHHh----c--CCCcEEEEeCCCC----hHH--H--h-hCCCCcccEEEECCeee
Q 028229 87 EVVLYQYEA-CPFC------NKVKAFLDY----Y--DIPYKVVEVNPIN----KKE--I--K-WSEYKKVPILMVDGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~-sp~c------~kvr~~L~~----~--gi~y~~v~v~~~~----~~e--l--~-~~p~~~VP~L~~~g~~i 144 (212)
++++|+... |..| +-...+|+. | |+||+...+|..+ ... + + .+..---|+++.+|+.+
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiV 85 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIV 85 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEe
Confidence 466666533 4444 344444432 2 7888877765422 111 2 1 45666779999999999
Q ss_pred ecHH
Q 028229 145 VDSS 148 (212)
Q Consensus 145 ~eS~ 148 (212)
.|..
T Consensus 86 aeGn 89 (106)
T COG4837 86 AEGN 89 (106)
T ss_pred ecCC
Confidence 8764
No 272
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=25.48 E-value=1.2e+02 Score=22.19 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=25.1
Q ss_pred CcEEEEEe--CCChhHHHHHHH-------HHhcCCCcEEEEeCCCChHHH----hhCCCCcccEEEECC
Q 028229 86 KEVVLYQY--EACPFCNKVKAF-------LDYYDIPYKVVEVNPINKKEI----KWSEYKKVPILMVDG 141 (212)
Q Consensus 86 ~~v~Ly~~--~~sp~c~kvr~~-------L~~~gi~y~~v~v~~~~~~el----~~~p~~~VP~L~~~g 141 (212)
+.+.|+-+ .+||.|.+-... +..+|+ +++-|..+...++ +..+ -.+|++.|.+
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~-~~~~~l~D~~ 89 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSVESHAKFAEKYG-LPFPLLSDPD 89 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhC-CCceEEECCc
Confidence 33444443 579999753322 333454 4455543333332 2223 2467666543
No 273
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.20 E-value=1.7e+02 Score=21.23 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhcCCCcEEEEe
Q 028229 98 FCNKVKAFLDYYDIPYKVVEV 118 (212)
Q Consensus 98 ~c~kvr~~L~~~gi~y~~v~v 118 (212)
-+.|++.+++++|++++..-.
T Consensus 16 la~km~~~a~~~gi~~~i~a~ 36 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAG 36 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEe
Confidence 456888888888888776543
No 274
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=24.80 E-value=58 Score=22.99 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCCCCCCcccHHHHHHHHhh-hcc
Q 028229 151 IDQLDQKLTPKRKADSPSGDDEEKKWRGY-DLS 182 (212)
Q Consensus 151 ~~yL~~~~~~~~lp~~~~~~a~v~~w~~~-d~~ 182 (212)
++||.+.- ...|.++.++++++.|++. ...
T Consensus 1 ~r~~~~~~--~~~~~~~~~~~~vd~~~d~~~~~ 31 (96)
T cd03200 1 ARFLYRLL--GPAPNAPNAATNIDSWVDTAIFQ 31 (96)
T ss_pred CchHHHHh--cccCCCchHHHHHHHHHHHHHHH
Confidence 36888772 2248888899999999887 533
No 275
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=24.75 E-value=5.9e+02 Score=23.90 Aligned_cols=90 Identities=11% Similarity=0.022 Sum_probs=55.7
Q ss_pred CCCcEEEEEeC-----CChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeee--cHHHHHHHHHh
Q 028229 84 VPKEVVLYQYE-----ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV--DSSAIIDQLDQ 156 (212)
Q Consensus 84 ~~~~v~Ly~~~-----~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~--eS~~I~~yL~~ 156 (212)
.++.|.|.+.. +-..+..++.+|+..|+....+.-....-.+++.-|...+= |+ ++ .....++||++
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~N-Iv-----~~~~~g~~~A~~Le~ 230 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLN-IC-----PYREIGLMAAEYLKE 230 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEE-EE-----echHHHHHHHHHHHH
Confidence 35678888654 22467899999999999988764322233455544544432 22 22 12457899999
Q ss_pred hcCCCCCCCCcccHHHHHHHHhh
Q 028229 157 KLTPKRKADSPSGDDEEKKWRGY 179 (212)
Q Consensus 157 ~~~~~~lp~~~~~~a~v~~w~~~ 179 (212)
+|+.+.+...|..-.....|+.-
T Consensus 231 ~fGiP~i~~~PiG~~~T~~fL~~ 253 (511)
T TIGR01278 231 KFGQPYITTTPIGVNATRRFIRE 253 (511)
T ss_pred HhCCCcccccccCHHHHHHHHHH
Confidence 99877543345555666666654
No 276
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=41 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=22.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEE
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKV 115 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~ 115 (212)
+-++-|+.|||++|.+..-..++++-.|+.
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKYKD 415 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHhcC
Confidence 446778899999999888777776655543
No 277
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=24.29 E-value=55 Score=28.04 Aligned_cols=22 Identities=27% Similarity=0.615 Sum_probs=16.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 028229 88 VVLYQYEACPFCNKVKAFLDYY 109 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L~~~ 109 (212)
|.+-+..+||+|..-||.|-..
T Consensus 62 v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred EEEEecccCccchhhHHHHHHH
Confidence 4444678899999999987543
No 278
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.29 E-value=1.1e+02 Score=24.22 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.0
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeCC
Q 028229 94 EACPFCNKVKAFLDYYDIPYKVVEVNP 120 (212)
Q Consensus 94 ~~sp~c~kvr~~L~~~gi~y~~v~v~~ 120 (212)
..-|.++++...|++.|++|+......
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~Sa 35 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSA 35 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECc
Confidence 345789999999999999999987764
No 279
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=24.22 E-value=73 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=16.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh
Q 028229 86 KEVVLYQYEACPFCNKVKAFLDY 108 (212)
Q Consensus 86 ~~v~Ly~~~~sp~c~kvr~~L~~ 108 (212)
..+..|+.++||.|....-.|..
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~ 44 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQ 44 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHH
Confidence 35666778889999977544443
No 280
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.10 E-value=95 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeCCCC
Q 028229 95 ACPFCNKVKAFLDYYDIPYKVVEVNPIN 122 (212)
Q Consensus 95 ~sp~c~kvr~~L~~~gi~y~~v~v~~~~ 122 (212)
.-+++++++..|++.|++|+........
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 3578999999999999999987776543
No 281
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=24.06 E-value=5.8e+02 Score=24.13 Aligned_cols=91 Identities=8% Similarity=-0.022 Sum_probs=51.5
Q ss_pred CCcEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhcCCCCC
Q 028229 85 PKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (212)
Q Consensus 85 ~~~v~Ly~-~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~~~~~l 163 (212)
++.|.|.+ +......+.++.+|++.|+.+..+...-..-.+++..+..++=+++.. . -...+.++|+++|+.+.+
T Consensus 202 ~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~-~---~~~~~A~~Leer~GiP~~ 277 (513)
T TIGR01861 202 KHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECA-R---SAEYICNELRKRYGIPRL 277 (513)
T ss_pred CCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECH-H---HHHHHHHHHHHHhCCCeE
Confidence 45677764 455667899999999999998865543223344554444443222211 0 013467777777776643
Q ss_pred CCCcccHHHHHHHHhh
Q 028229 164 ADSPSGDDEEKKWRGY 179 (212)
Q Consensus 164 p~~~~~~a~v~~w~~~ 179 (212)
.-++..-.....|+.-
T Consensus 278 ~~~~~Gi~~Td~~Lr~ 293 (513)
T TIGR01861 278 DIDGFGFEPLAASLRK 293 (513)
T ss_pred ecCcCCHHHHHHHHHH
Confidence 2223444455555443
No 282
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=23.68 E-value=3.5e+02 Score=24.01 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=59.2
Q ss_pred CCCCcEEEEEeC-CC-hhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHH-HHHHHHHhhcC
Q 028229 83 LVPKEVVLYQYE-AC-PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSS-AIIDQLDQKLT 159 (212)
Q Consensus 83 ~~~~~v~Ly~~~-~s-p~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~-~I~~yL~~~~~ 159 (212)
..++.|.|.+.. .. .....++.+|+..|+++..+......-++++..|...+=++. .. +.. .+.++|+++|+
T Consensus 142 ~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~-~~----~~~~~~a~~L~e~~g 216 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVL-CP----EGGPYAAEWLEERFG 216 (398)
T ss_dssp TSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEES-SC----CHHHHHHHHHHHHHT
T ss_pred CCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEe-cc----chhhHHHHHHHHHhC
Confidence 355689888764 33 577889999999999877776544445555544443322221 11 123 37888888888
Q ss_pred CCCC-CCCcccHHHHHHHHhh-hcccc
Q 028229 160 PKRK-ADSPSGDDEEKKWRGY-DLSSI 184 (212)
Q Consensus 160 ~~~l-p~~~~~~a~v~~w~~~-d~~l~ 184 (212)
.+.+ ...|.......+|+.- .+.+.
T Consensus 217 iP~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 217 IPYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp -EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred CCeeeccccccHHHHHHHHHHHHHHhC
Confidence 7653 2446666777777765 44443
No 283
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=23.51 E-value=1.1e+02 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=12.4
Q ss_pred CcEEEEE--eCCChhHHHHHHHH
Q 028229 86 KEVVLYQ--YEACPFCNKVKAFL 106 (212)
Q Consensus 86 ~~v~Ly~--~~~sp~c~kvr~~L 106 (212)
+.+.|+- ..+||.|....-.|
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l 52 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAF 52 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHH
Confidence 3444544 36799998644333
No 284
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=23.24 E-value=84 Score=21.79 Aligned_cols=22 Identities=5% Similarity=0.155 Sum_probs=17.7
Q ss_pred cHHHHHHHHhh-hccccchhhhh
Q 028229 169 GDDEEKKWRGY-DLSSIHCCSIF 190 (212)
Q Consensus 169 ~~a~v~~w~~~-d~~l~~~~~p~ 190 (212)
+++++++|+.| ++.+.+.+...
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~ 24 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYA 24 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHH
Confidence 57889999999 88888776554
No 285
>PTZ00056 glutathione peroxidase; Provisional
Probab=23.04 E-value=2.7e+02 Score=22.52 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=12.3
Q ss_pred EEEEEeCCChhHHHHHHHH
Q 028229 88 VVLYQYEACPFCNKVKAFL 106 (212)
Q Consensus 88 v~Ly~~~~sp~c~kvr~~L 106 (212)
+.-|...+||+|.+-.-.|
T Consensus 43 lv~fwAswC~~C~~e~p~L 61 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQM 61 (199)
T ss_pred EEEEECCCCCChHHHHHHH
Confidence 4455668899998644333
No 286
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=22.88 E-value=3.6e+02 Score=20.84 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=37.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEeCCCChHHHh-hCCCCcccEEEE---CCeee
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV---DGEQL 144 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~~~~~el~-~~p~~~VP~L~~---~g~~i 144 (212)
.+++.+...-..-..++.+++.+++.+....+.......+. ..+-..+|.++. +|..+
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEE
Confidence 47776665544456788999999988766544322222343 456678998875 56665
No 287
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.84 E-value=1.7e+02 Score=19.64 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.6
Q ss_pred cccEEEECCeeeecHHHHHHHHHhh
Q 028229 133 KVPILMVDGEQLVDSSAIIDQLDQK 157 (212)
Q Consensus 133 ~VP~L~~~g~~i~eS~~I~~yL~~~ 157 (212)
+-||+.-.| ..+|-..|.+||.+.
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~ 38 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQN 38 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTT
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcC
Confidence 458888788 999999999999983
No 288
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=22.29 E-value=38 Score=22.93 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeee
Q 028229 98 FCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQL 144 (212)
Q Consensus 98 ~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i 144 (212)
..++++-+|.+.+||...+ .++|+|.+||+.+
T Consensus 19 ~~k~lKk~~~e~kIP~~~R---------------~~~Pll~~~~~iv 50 (74)
T PF11734_consen 19 GSKKLKKLFQEAKIPPWQR---------------DRLPLLCDGGEIV 50 (74)
T ss_dssp SEEEHHHHHHHCT--HHHC---------------CCSEEEEETTEEE
T ss_pred CCchHHHHHHHcCCCHHHH---------------CcEEEEEECCEEE
Confidence 3567788888888875432 5678888887665
No 289
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=22.24 E-value=82 Score=21.10 Aligned_cols=22 Identities=32% Similarity=0.795 Sum_probs=16.3
Q ss_pred cEEEEEe----CCChhHHHHHHHHHh
Q 028229 87 EVVLYQY----EACPFCNKVKAFLDY 108 (212)
Q Consensus 87 ~v~Ly~~----~~sp~c~kvr~~L~~ 108 (212)
+++||-| ..+.||.||-.+|.+
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 3567755 457899999988865
No 290
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=21.59 E-value=2.4e+02 Score=21.16 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=24.1
Q ss_pred cEEEEEe--CCChhHHH-------HHHHHHhcCCCcEEEEeCCCChHHHh----hCCCCcccEEEE
Q 028229 87 EVVLYQY--EACPFCNK-------VKAFLDYYDIPYKVVEVNPINKKEIK----WSEYKKVPILMV 139 (212)
Q Consensus 87 ~v~Ly~~--~~sp~c~k-------vr~~L~~~gi~y~~v~v~~~~~~el~----~~p~~~VP~L~~ 139 (212)
.+.|+-+ .+||.|.. ....+...|+ +++-|+.+...+++ ..+ -..|++.|
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v--~vi~Is~d~~~~~~~~~~~~~-~~~~~l~D 94 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGV--VVLGISTDKPEKLSRFAEKEL-LNFTLLSD 94 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhC-CCCeEEEC
Confidence 3444443 36888864 2333344454 45555544433322 222 35676655
No 291
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.51 E-value=1.6e+02 Score=19.65 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEeCC
Q 028229 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (212)
Q Consensus 89 ~Ly~~~~sp~c~kvr~~L~~~gi~y~~v~v~~ 120 (212)
.+..|+...++.++...|+..|++++.+.+..
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 35567777789999999999999999987753
No 292
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=21.33 E-value=2.4e+02 Score=21.35 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeee
Q 028229 101 KVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQL 144 (212)
Q Consensus 101 kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i 144 (212)
+++..|..+|+..++..+.... .++...+ -..|.+.+||..|
T Consensus 31 ~l~~~L~~~Giev~l~~~~l~~-~~~~~~~-~~S~~I~inG~pi 72 (120)
T PF10865_consen 31 ELAPVLAPLGIEVRLEEIELDE-EEFARQP-LESPTIRINGRPI 72 (120)
T ss_pred HHHHHHHhCCcEEEEEEEECCh-HHHhhcc-cCCCeeeECCEeh
Confidence 5667788889987776664432 2444444 7789999999875
No 293
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.68 E-value=6.4e+02 Score=22.86 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCcEEEEEeCCC------hhHHHHHHHHHhcCCCcEEEEeCCCChHHHhhCCCCcccEEEECCeeeecHHHHHHHHHhhc
Q 028229 85 PKEVVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (212)
Q Consensus 85 ~~~v~Ly~~~~s------p~c~kvr~~L~~~gi~y~~v~v~~~~~~el~~~p~~~VP~L~~~g~~i~eS~~I~~yL~~~~ 158 (212)
++.|.|.+.... .....++.+|++.|++...+.-.-..-.+++..+...+=+++.. .....+.++|+++|
T Consensus 161 ~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~----~~g~~~a~~Lee~~ 236 (426)
T cd01972 161 EDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCL----DLGYYLGAALEQRF 236 (426)
T ss_pred CCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECh----hHHHHHHHHHHHHh
Confidence 456888875543 44689999999999988766543233445554444433222211 12356788999999
Q ss_pred CCCCC-CCCcccHHHHHHHHhh
Q 028229 159 TPKRK-ADSPSGDDEEKKWRGY 179 (212)
Q Consensus 159 ~~~~l-p~~~~~~a~v~~w~~~ 179 (212)
+.+.+ -.-|..-....+|+.-
T Consensus 237 GiP~~~~~~P~G~~~T~~~l~~ 258 (426)
T cd01972 237 GVPEIKAPQPYGIEATDKWLRE 258 (426)
T ss_pred CCCeEecCCccCHHHHHHHHHH
Confidence 87643 1124445566666654
No 294
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.29 E-value=1.2e+02 Score=22.02 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=19.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC--CcEEEEeC
Q 028229 87 EVVLYQYEACPFCNKVKAFLDYYDI--PYKVVEVN 119 (212)
Q Consensus 87 ~v~Ly~~~~sp~c~kvr~~L~~~gi--~y~~v~v~ 119 (212)
.+..|...+||.|....-.|.+..- .++++.++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 3566667899999976655544321 24444444
Done!