Query 028230
Match_columns 211
No_of_seqs 260 out of 1668
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.3E-28 2.9E-33 216.4 19.5 201 6-211 8-210 (358)
2 PRK11272 putative DMT superfam 99.9 2.3E-21 5E-26 166.1 19.6 161 12-211 9-171 (292)
3 PRK11689 aromatic amino acid e 99.9 1.2E-21 2.5E-26 168.2 15.2 171 9-211 2-177 (295)
4 TIGR00688 rarD rarD protein. T 99.9 4.8E-21 1E-25 160.9 16.9 161 11-211 2-167 (256)
5 PRK11453 O-acetylserine/cystei 99.9 1.4E-20 3E-25 161.8 16.3 157 13-211 6-164 (299)
6 PRK15430 putative chlorampheni 99.9 1.6E-20 3.4E-25 161.3 15.6 163 8-211 5-170 (296)
7 TIGR00950 2A78 Carboxylate/Ami 99.8 1.1E-19 2.4E-24 152.1 15.2 148 23-211 1-149 (260)
8 PRK10532 threonine and homoser 99.8 1.3E-17 2.7E-22 143.1 16.6 161 8-211 9-169 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.8 3.4E-17 7.4E-22 140.7 18.7 150 26-211 17-166 (302)
10 PTZ00343 triose or hexose phos 99.7 8.2E-16 1.8E-20 135.2 18.1 164 10-211 48-215 (350)
11 TIGR03340 phn_DUF6 phosphonate 99.7 7.5E-16 1.6E-20 131.2 16.4 162 13-211 3-165 (281)
12 PF00892 EamA: EamA-like trans 99.7 3.4E-16 7.4E-21 116.1 9.4 124 21-154 1-125 (126)
13 COG0697 RhaT Permeases of the 99.6 2.4E-14 5.3E-19 120.3 17.0 170 8-211 4-175 (292)
14 PF06027 DUF914: Eukaryotic pr 99.6 1.4E-13 3E-18 119.9 17.4 166 20-211 22-189 (334)
15 COG2510 Predicted membrane pro 99.5 7.6E-14 1.7E-18 104.2 8.7 135 12-154 4-138 (140)
16 TIGR00950 2A78 Carboxylate/Ami 99.4 3E-12 6.6E-17 107.0 14.9 132 8-150 125-259 (260)
17 PF13536 EmrE: Multidrug resis 99.4 2E-12 4.3E-17 95.9 7.5 103 45-155 2-106 (113)
18 TIGR00776 RhaT RhaT L-rhamnose 99.3 2E-11 4.4E-16 104.7 13.8 169 12-210 2-172 (290)
19 PRK10532 threonine and homoser 99.2 4.3E-10 9.4E-15 96.4 16.1 135 10-156 147-282 (293)
20 PRK11272 putative DMT superfam 99.2 4.1E-10 8.8E-15 96.5 14.9 136 10-155 149-285 (292)
21 PLN00411 nodulin MtN21 family 99.1 3.1E-09 6.7E-14 93.9 15.7 138 12-158 190-331 (358)
22 PRK11689 aromatic amino acid e 99.1 2.3E-09 5E-14 92.0 14.4 134 10-156 155-288 (295)
23 COG2962 RarD Predicted permeas 99.1 7.7E-09 1.7E-13 87.5 14.9 143 8-158 4-147 (293)
24 TIGR00817 tpt Tpt phosphate/ph 99.0 2.2E-09 4.9E-14 92.2 11.2 141 10-157 144-295 (302)
25 PRK11453 O-acetylserine/cystei 99.0 1.9E-08 4.1E-13 86.5 16.2 139 10-155 142-287 (299)
26 COG5006 rhtA Threonine/homoser 99.0 1.9E-08 4.1E-13 83.6 15.2 157 12-211 13-169 (292)
27 TIGR03340 phn_DUF6 phosphonate 98.9 5.1E-09 1.1E-13 89.2 8.9 133 10-152 143-280 (281)
28 KOG2765 Predicted membrane pro 98.9 2.9E-09 6.2E-14 92.7 7.1 99 88-211 170-268 (416)
29 PF03151 TPT: Triose-phosphate 98.9 7.6E-08 1.6E-12 74.2 13.3 134 12-152 1-150 (153)
30 KOG4510 Permease of the drug/m 98.9 2.1E-10 4.5E-15 95.9 -1.4 130 12-154 39-168 (346)
31 PTZ00343 triose or hexose phos 98.8 1.7E-07 3.8E-12 82.5 15.8 139 9-154 192-347 (350)
32 PF08449 UAA: UAA transporter 98.8 3.6E-07 7.8E-12 78.8 15.8 158 26-211 15-175 (303)
33 COG0697 RhaT Permeases of the 98.7 9.4E-07 2E-11 74.1 15.5 132 10-154 153-286 (292)
34 PRK15430 putative chlorampheni 98.7 5.6E-07 1.2E-11 77.3 14.1 131 15-154 153-284 (296)
35 TIGR00776 RhaT RhaT L-rhamnose 98.6 1.5E-06 3.3E-11 74.6 13.6 134 10-155 151-288 (290)
36 PRK15051 4-amino-4-deoxy-L-ara 98.4 1.5E-06 3.4E-11 64.3 8.0 68 81-154 40-108 (111)
37 PRK02971 4-amino-4-deoxy-L-ara 98.4 8.9E-06 1.9E-10 61.8 11.4 117 11-154 2-121 (129)
38 COG5006 rhtA Threonine/homoser 98.3 1.4E-05 3E-10 66.7 11.5 134 7-151 144-278 (292)
39 PF04142 Nuc_sug_transp: Nucle 98.1 3.9E-05 8.4E-10 64.4 11.1 121 73-209 13-133 (244)
40 KOG2234 Predicted UDP-galactos 97.9 0.002 4.3E-08 56.3 18.4 174 11-207 15-200 (345)
41 KOG2766 Predicted membrane pro 97.9 3.1E-07 6.6E-12 76.7 -5.5 160 19-210 27-186 (336)
42 PF06027 DUF914: Eukaryotic pr 97.7 0.00035 7.6E-09 61.2 10.6 141 7-156 164-306 (334)
43 KOG1441 Glucose-6-phosphate/ph 97.6 0.00025 5.4E-09 61.7 8.2 149 27-211 33-184 (316)
44 PF08449 UAA: UAA transporter 97.6 0.0018 4E-08 55.7 13.4 139 12-156 155-298 (303)
45 TIGR00688 rarD rarD protein. T 97.6 0.002 4.3E-08 53.9 13.3 106 15-124 150-255 (256)
46 KOG4314 Predicted carbohydrate 97.5 0.0001 2.2E-09 59.7 3.6 92 88-210 64-155 (290)
47 KOG3912 Predicted integral mem 97.3 0.0039 8.4E-08 53.2 10.5 161 24-210 16-196 (372)
48 KOG1441 Glucose-6-phosphate/ph 97.2 0.0013 2.8E-08 57.3 7.3 140 8-155 160-307 (316)
49 PF06800 Sugar_transport: Suga 97.1 0.0044 9.5E-08 52.7 9.8 132 9-151 136-267 (269)
50 PRK13499 rhamnose-proton sympo 97.0 0.018 4E-07 50.7 13.0 175 8-206 4-190 (345)
51 PF06800 Sugar_transport: Suga 97.0 0.013 2.7E-07 49.9 11.3 115 75-210 43-158 (269)
52 PRK10650 multidrug efflux syst 96.8 0.02 4.4E-07 42.1 9.7 63 85-153 42-106 (109)
53 PRK10452 multidrug efflux syst 96.8 0.0052 1.1E-07 46.1 6.4 68 82-155 34-103 (120)
54 COG2076 EmrE Membrane transpor 96.7 0.0074 1.6E-07 44.1 6.8 66 83-154 35-102 (106)
55 KOG1444 Nucleotide-sugar trans 96.7 0.14 3.1E-06 44.3 15.3 164 12-211 13-178 (314)
56 PRK09541 emrE multidrug efflux 96.6 0.011 2.3E-07 43.7 7.2 67 83-155 35-103 (110)
57 COG2962 RarD Predicted permeas 96.6 0.1 2.3E-06 44.6 13.8 127 18-154 155-282 (293)
58 KOG4510 Permease of the drug/m 96.6 0.0019 4.1E-08 54.7 3.2 134 11-154 191-324 (346)
59 PF05653 Mg_trans_NIPA: Magnes 96.5 0.021 4.6E-07 49.4 9.2 118 9-156 5-123 (300)
60 PF10639 UPF0546: Uncharacteri 96.4 0.0063 1.4E-07 45.1 4.8 109 17-153 2-112 (113)
61 PRK11431 multidrug efflux syst 96.4 0.012 2.6E-07 43.1 6.3 64 85-154 36-101 (105)
62 PRK13499 rhamnose-proton sympo 96.4 0.15 3.3E-06 45.0 13.9 146 9-155 172-341 (345)
63 PF04657 DUF606: Protein of un 96.2 0.17 3.8E-06 38.7 11.8 105 39-152 29-138 (138)
64 PF00893 Multi_Drug_Res: Small 95.9 0.022 4.9E-07 40.5 5.3 56 84-145 35-92 (93)
65 KOG1443 Predicted integral mem 94.9 0.052 1.1E-06 46.9 5.2 62 71-132 77-139 (349)
66 TIGR00803 nst UDP-galactose tr 94.1 0.31 6.6E-06 39.8 8.0 61 85-151 160-220 (222)
67 KOG1444 Nucleotide-sugar trans 93.8 0.54 1.2E-05 40.8 9.1 138 11-154 157-299 (314)
68 KOG2765 Predicted membrane pro 93.8 0.47 1E-05 42.2 8.7 140 8-155 244-390 (416)
69 KOG1580 UDP-galactose transpor 92.5 0.35 7.6E-06 40.6 5.7 96 80-201 88-183 (337)
70 KOG2922 Uncharacterized conser 92.4 0.065 1.4E-06 46.5 1.4 117 9-155 19-136 (335)
71 KOG1580 UDP-galactose transpor 90.4 0.34 7.3E-06 40.7 3.6 73 76-154 240-312 (337)
72 COG4975 GlcU Putative glucose 88.7 0.029 6.3E-07 47.1 -3.8 164 12-208 3-170 (288)
73 COG3238 Uncharacterized protei 87.3 12 0.00026 29.1 11.3 110 39-153 33-144 (150)
74 KOG1581 UDP-galactose transpor 86.2 22 0.00048 31.0 12.9 140 39-209 50-191 (327)
75 KOG3912 Predicted integral mem 85.0 15 0.00033 31.8 10.4 138 9-153 174-332 (372)
76 KOG1581 UDP-galactose transpor 84.1 23 0.00049 30.9 11.1 137 10-155 171-313 (327)
77 COG4975 GlcU Putative glucose 81.2 1.5 3.3E-05 37.0 2.9 133 11-154 152-284 (288)
78 KOG1443 Predicted integral mem 81.1 37 0.00081 29.7 11.3 136 11-153 164-313 (349)
79 COG5070 VRG4 Nucleotide-sugar 78.4 15 0.00032 30.8 7.8 120 28-154 172-295 (309)
80 COG5070 VRG4 Nucleotide-sugar 68.1 3.6 7.8E-05 34.4 1.9 153 27-211 22-176 (309)
81 PF07857 DUF1632: CEO family ( 61.2 42 0.00091 28.4 7.1 135 12-160 1-139 (254)
82 PF04142 Nuc_sug_transp: Nucle 56.5 1.2E+02 0.0025 25.3 13.6 123 9-131 112-235 (244)
83 COG3086 RseC Positive regulato 56.4 20 0.00043 27.7 4.0 49 97-154 68-121 (150)
84 KOG1442 GDP-fucose transporter 54.1 45 0.00097 28.9 6.1 144 9-158 183-330 (347)
85 KOG1582 UDP-galactose transpor 52.8 73 0.0016 27.6 7.1 115 37-157 217-334 (367)
86 KOG4831 Unnamed protein [Funct 49.6 1E+02 0.0022 22.7 8.7 118 14-154 6-124 (125)
87 KOG1583 UDP-N-acetylglucosamin 45.9 44 0.00095 29.0 4.8 123 70-209 60-183 (330)
88 PF06379 RhaT: L-rhamnose-prot 40.4 2.7E+02 0.0058 24.8 13.7 179 10-207 6-190 (344)
89 PRK02237 hypothetical protein; 39.8 1.5E+02 0.0033 21.8 9.5 28 121-154 77-104 (109)
90 TIGR00803 nst UDP-galactose tr 38.5 58 0.0013 26.2 4.5 44 105-154 6-49 (222)
91 PF06298 PsbY: Photosystem II 38.3 45 0.00097 19.5 2.6 20 191-210 7-26 (36)
92 CHL00196 psbY photosystem II p 37.9 47 0.001 19.4 2.6 19 191-209 7-25 (36)
93 KOG1442 GDP-fucose transporter 37.6 68 0.0015 27.8 4.7 91 39-131 60-156 (347)
94 PF05653 Mg_trans_NIPA: Magnes 36.1 35 0.00076 29.5 2.9 75 80-154 214-291 (300)
95 PF02694 UPF0060: Uncharacteri 35.1 30 0.00065 25.3 1.9 31 119-155 73-103 (107)
96 PF04342 DUF486: Protein of un 31.4 45 0.00098 24.4 2.3 49 96-150 54-103 (108)
97 PF11139 DUF2910: Protein of u 28.5 3.1E+02 0.0068 22.0 10.1 44 111-154 160-210 (214)
98 COG1742 Uncharacterized conser 27.3 1.3E+02 0.0029 22.0 4.1 19 137-155 86-104 (109)
99 COG0474 MgtA Cation transport 26.4 6.8E+02 0.015 25.2 14.1 97 2-99 693-803 (917)
100 PRK15462 dipeptide/tripeptide 25.6 5.5E+02 0.012 23.8 9.5 31 93-123 291-327 (493)
101 PRK13240 pbsY photosystem II p 24.7 99 0.0021 18.5 2.6 18 192-209 8-25 (40)
102 PRK10862 SoxR reducing system 23.4 1.2E+02 0.0027 23.4 3.7 29 97-125 68-96 (154)
103 PF04246 RseC_MucC: Positive r 22.9 1.2E+02 0.0026 22.6 3.5 27 99-125 63-89 (135)
104 PF06570 DUF1129: Protein of u 22.3 2.9E+02 0.0064 22.1 5.9 19 12-30 112-130 (206)
105 PF08802 CytB6-F_Fe-S: Cytochr 21.3 1.6E+02 0.0035 17.4 3.1 27 70-96 4-31 (39)
106 PF11460 DUF3007: Protein of u 20.8 2.8E+02 0.0061 20.2 4.8 37 88-124 19-55 (104)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=216.42 Aligned_cols=201 Identities=47% Similarity=0.735 Sum_probs=157.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 028230 6 FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (211)
Q Consensus 6 ~~~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~ 85 (211)
|.++.++|+.++.+++.+++..++.|.+++.|++|+.+.++|+.+|+++++|+.+.+ +|++++++.+++++..+.++|+
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~~~~~~~~~~~l~l~g~ 86 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSLPPLSVSILSKIGLLGF 86 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhcccCcchHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999998765 4422224445788899999999
Q ss_pred HHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (211)
Q Consensus 86 ~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~ 165 (211)
+|+.++.+++.|++||||++|+++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++..++++.....+
T Consensus 87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~ 166 (358)
T PLN00411 87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVAS 166 (358)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence 98667889999999999999999999999999999999965555555555667899999999999998866553211000
Q ss_pred C--CCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 166 S--PSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 166 ~--~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+ ..+.+. +.+. ......++..|++++++|++|||+|+++||+
T Consensus 167 ~~~~~~~~~-~~~~---~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~ 210 (358)
T PLN00411 167 SPPYLNFRQ-LSPP---LSSSNSDWLIGGALLTIQGIFVSVSFILQAH 210 (358)
T ss_pred ccccccccc-cccc---cCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 0000 0112335678999999999999999999974
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.88 E-value=2.3e-21 Score=166.06 Aligned_cols=161 Identities=12% Similarity=0.104 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLS 90 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~ 90 (211)
-...++...++||.+++++|...+ ++||.+++++|+.+++++++++...+ |++. .+++++.+...+|.++ ..+
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~---~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHPL---PTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCCC---CcHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999887 69999999999999999998887553 2222 2467888889999998 888
Q ss_pred HHHHHHhh-hccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCC
Q 028230 91 QIFGYTGI-ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS 169 (211)
Q Consensus 91 ~~l~~~gl-~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~ 169 (211)
+.+++.+. +++++++++++.++.|+++.+++.+ +|||++++ +++|++++++|+.++... +
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~----------- 143 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-G----------- 143 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-c-----------
Confidence 99999999 9999999999999999999999986 69999875 589999999999887521 1
Q ss_pred CCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
. .+. ...|+++.++++++||.|++.+||
T Consensus 144 ------------~-~~~-~~~G~l~~l~a~~~~a~~~~~~~~ 171 (292)
T PRK11272 144 ------------N-LSG-NPWGAILILIASASWAFGSVWSSR 171 (292)
T ss_pred ------------c-ccc-chHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 111 246999999999999999999875
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.88 E-value=1.2e-21 Score=168.18 Aligned_cols=171 Identities=15% Similarity=0.056 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g- 87 (211)
+.+++++++.+.++||++++.+|.++++ +||+.++++|+.+|+++++++. . ++ +.++++ ++....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~--~~----~~~~~~-~~~~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--G--FP----RLRQFP-KRYLLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--c--cc----cccccc-HHHHHHHhHHH
Confidence 4567889999999999999999999874 9999999999999999988763 1 11 111112 2334556667
Q ss_pred HHHHHHHHHhhhc----cchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccC
Q 028230 88 VLSQIFGYTGIAC----SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL 163 (211)
Q Consensus 88 ~~~~~l~~~gl~~----tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~ 163 (211)
+.++.+++.|++| +++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++...+ +.. .
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~-~~~-~ 143 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGD-NGL-S 143 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCC-ccc-h
Confidence 8888888888865 57889999999999999999999999999875 5899999999998886321 100 0
Q ss_pred CCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.. +. ..+..+...|+++.++|++|||+|++++||
T Consensus 144 ~~---------~~-----~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~ 177 (295)
T PRK11689 144 LA---------EL-----INNIASNPLSYGLAFIGAFIWAAYCNVTRK 177 (295)
T ss_pred hh---------hh-----hhccccChHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 00 000112246999999999999999999886
No 4
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=4.8e-21 Score=160.87 Aligned_cols=161 Identities=10% Similarity=0.058 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc----ccCCCCHH-HHHHHHHHHH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT----VVPSFKFS-ILSRIILLSF 85 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~----~~~~~~~~-~~~~l~~lg~ 85 (211)
|++.+++++.++||.++++.|. .+ ++||.++.++|++++++++.++...+ ++++ +.++.+++ ++..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF-RQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4788999999999999999998 45 49999999999999998888776443 2211 10111223 3444566666
Q ss_pred HHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (211)
Q Consensus 86 ~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~ 165 (211)
+...++.+++++++++++++|+++.++.|+++++++++++|||++++ +++|++++++|+.++...++
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~------- 145 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG------- 145 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence 66889999999999999999999999999999999999999999876 58999999999988753211
Q ss_pred CCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+.+ .+.+++++||+.|.+.+|+
T Consensus 146 -------------------~~~-----~~~l~aa~~~a~~~i~~~~ 167 (256)
T TIGR00688 146 -------------------SLP-----WEALVLAFSFTAYGLIRKA 167 (256)
T ss_pred -------------------Cch-----HHHHHHHHHHHHHHHHHhh
Confidence 111 3567899999999999875
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.86 E-value=1.4e-20 Score=161.78 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHH
Q 028230 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQ 91 (211)
Q Consensus 13 ~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~ 91 (211)
.+..+++.++||.+++++|.+++ ++||.++.++|+.+++++++++. + ++ +.+++ .+...|++. ..++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~-----~~~~~---~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP-----KVPLN---LLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC-----CCchH---HHHHHHHHHHHHHH
Confidence 45678899999999999999987 49999999999999887776653 2 11 11122 345567766 6677
Q ss_pred HHHHHhhhc-cchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCC
Q 028230 92 IFGYTGIAC-SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSST 170 (211)
Q Consensus 92 ~l~~~gl~~-tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~ 170 (211)
.+++.+++| .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. ++.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~----------- 135 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL----------- 135 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC-----------
Confidence 788899998 58899999999999999999999999999875 58999999999988862 110
Q ss_pred CccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 171 HSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+ ..+....||++.+.++++|++|+++|||
T Consensus 136 -----------~-~~~~~~~G~~l~l~aal~~a~~~v~~~~ 164 (299)
T PRK11453 136 -----------N-GQHVAMLGFMLTLAAAFSWACGNIFNKK 164 (299)
T ss_pred -----------C-CcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111246999999999999999999874
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.85 E-value=1.6e-20 Score=161.26 Aligned_cols=163 Identities=10% Similarity=0.013 Sum_probs=129.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc-cCC-CCHHHHHHHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV-VPS-FKFSILSRIILLSF 85 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~-~~~-~~~~~~~~l~~lg~ 85 (211)
++.++++.++++.++||.++++.|.. + ++||.++.++|+.++.+++.++...+ ++... .++ .+++++. ....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIF-MLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHH-HHHHHH
Confidence 55789999999999999999999975 4 59999999999999998888776543 22110 000 1234433 344677
Q ss_pred HH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCC
Q 028230 86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLG 164 (211)
Q Consensus 86 ~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~ 164 (211)
++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++....+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------ 148 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------ 148 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC------
Confidence 77 899999999999999999999999999999999999999999876 58999999999998862111
Q ss_pred CCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 165 TSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+. .++.++++++||.|++.+|+
T Consensus 149 --------------------~~-----~~~~l~aa~~~a~~~i~~r~ 170 (296)
T PRK15430 149 --------------------SL-----PIIALGLAFSFAFYGLVRKK 170 (296)
T ss_pred --------------------Cc-----cHHHHHHHHHHHHHHHHHHh
Confidence 11 14577899999999999875
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.83 E-value=1.1e-19 Score=152.13 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhcc
Q 028230 23 TVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIACS 101 (211)
Q Consensus 23 wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~~l~~~gl~~t 101 (211)
||.+++..|..+++..||....+.|+..+.+++.++... + . +++++......|.++ .+++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999998877999999999999998888776422 2 1 345677888999999 99999999999999
Q ss_pred chhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccC
Q 028230 102 SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMG 181 (211)
Q Consensus 102 sa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
++++++++.++.|+++.+++.+++|||++++ +++|++++++|+.++.. +++
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~---------------------- 122 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN---------------------- 122 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc----------------------
Confidence 9999999999999999999999999999875 58999999999988752 110
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 182 SPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 182 ~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.++...|+++.+.++++|+.|.+.+||
T Consensus 123 ---~~~~~~G~~~~l~a~~~~a~~~~~~k~ 149 (260)
T TIGR00950 123 ---LSINPAGLLLGLGSGISFALGTVLYKR 149 (260)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHhH
Confidence 112357999999999999999999885
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.77 E-value=1.3e-17 Score=143.08 Aligned_cols=161 Identities=12% Similarity=0.030 Sum_probs=127.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG 87 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g 87 (211)
.+.+++..++++.++|+.+++++|.++++ +||.+++++|+.+|+++++++...+ + .+.++++++..+..|++.
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~~--~----~~~~~~~~~~~~~~g~~~ 81 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKPW--R----LRFAKEQRLPLLFYGVSL 81 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhHH--h----ccCCHHHHHHHHHHHHHH
Confidence 35778999999999999999999999985 9999999999999999988775322 1 123567888888888866
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP 167 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~ 167 (211)
...+.+++++++|++++.++++.++.|+++.+++. |+.. +..++.++++|+.++.. .+.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~-------- 140 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQ-------- 140 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCC--------
Confidence 66778899999999999999999999999988763 4432 34577889999987752 111
Q ss_pred CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+..+. ...|+++.++++++|++|+++.||
T Consensus 141 --------------~~~~~-~~~G~ll~l~aa~~~a~~~v~~r~ 169 (293)
T PRK10532 141 --------------DVSHV-DLTGAALALGAGACWAIYILSGQR 169 (293)
T ss_pred --------------CcccC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 246999999999999999998664
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.77 E-value=3.4e-17 Score=140.70 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=121.6
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 028230 26 LNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTL 105 (211)
Q Consensus 26 ~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~ 105 (211)
..+.-|.++++--+|..++++|+.++.+.+.+... . ..+++ ++.+++|+++++..|++++.++.+.+.+++|+|+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~ 93 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-S-GLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSF 93 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-h-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 33578999875477999999999999877665521 1 11222 456789999999999999777899999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCCCC
Q 028230 106 SSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV 185 (211)
Q Consensus 106 as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
++++.+++|+++.+++++++|||++++ ++.|++++++|+.+.. .++ .+
T Consensus 94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~------------------------~~ 141 (302)
T TIGR00817 94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE------------------------LS 141 (302)
T ss_pred HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc------------------------cc
Confidence 999999999999999999999999865 5899999999997643 110 11
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 186 SNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 186 ~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.+ ..|+++.++|+++|++|++.+||
T Consensus 142 ~~-~~G~~~~l~a~~~~a~~~v~~k~ 166 (302)
T TIGR00817 142 FN-WAGFLSAMISNITFVSRNIFSKK 166 (302)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 46999999999999999998764
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.71 E-value=8.2e-16 Score=135.17 Aligned_cols=164 Identities=13% Similarity=0.044 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CHHHHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLSFI 86 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~-p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~lg~~ 86 (211)
.+.....+.--.+=....+..|.+++. +| |+.++.+|++++.++...+... +.+++ ++. .+++++.++.+|++
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKI-PRIKSLKLFLKNFLPQGLC 123 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 333333333333334456678999885 99 9999999999998776554322 12222 333 35688899999999
Q ss_pred H-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (211)
Q Consensus 87 g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~ 165 (211)
+ .. +...+.++++++++.+.++.++.|++++++++++++||++++ ++.|++++++|+.+.+. ++
T Consensus 124 ~~~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~------ 188 (350)
T PTZ00343 124 HLFV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE------ 188 (350)
T ss_pred HHHH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc------
Confidence 9 55 445679999999999999999999999999999999999875 68999999999988752 10
Q ss_pred CCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.+.+ ..|+++.++|+++|+.|++..|+
T Consensus 189 ------------------~~~~-~~G~~~~l~s~~~~a~~~i~~k~ 215 (350)
T PTZ00343 189 ------------------LHFT-WLAFWCAMLSNLGSSLRSIFAKK 215 (350)
T ss_pred ------------------chhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 46999999999999999998764
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.70 E-value=7.5e-16 Score=131.22 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHH
Q 028230 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQ 91 (211)
Q Consensus 13 ~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~ 91 (211)
....+.++++|+...+.+|...++ -++. .++++..+++++.|+...+..+..+ ++.+ +++......+.++ ..++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGW-SRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCC-CCcc-hhhHHHHHHHHHHHHHHH
Confidence 456778999999999999965554 3443 4778888888888887653012222 2223 3444455556666 9999
Q ss_pred HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCC
Q 028230 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTH 171 (211)
Q Consensus 92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 171 (211)
.+++.|++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|+.++... ++
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~------------ 138 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF------------ 138 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc------------
Confidence 99999999999999999999999999999999999999876 589999999999987621 10
Q ss_pred ccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 172 STNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
...+ ..|+.+.++++++|++|+++.|+
T Consensus 139 ------------~~~~-~~g~~~~l~aal~~a~~~i~~k~ 165 (281)
T TIGR03340 139 ------------AQHR-RKAYAWALAAALGTAIYSLSDKA 165 (281)
T ss_pred ------------cccc-hhHHHHHHHHHHHHHHhhhhccc
Confidence 0111 35888999999999999998774
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.67 E-value=3.4e-16 Score=116.05 Aligned_cols=124 Identities=22% Similarity=0.342 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q 028230 21 CTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIA 99 (211)
Q Consensus 21 ~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~~l~~~gl~ 99 (211)
++||.+.+..|...++ +||....++|+..+++ ++++.... +++.. .+.+.+++......|.++ ...+.+++.+++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999998875 9999999999999997 66666555 44332 355678888899999998 999999999999
Q ss_pred ccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 100 CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 100 ~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
+++++.++.+.++.|+++.++++++++|+++++ +++|+++.+.|+++++
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875 6899999999998764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.63 E-value=2.4e-14 Score=120.32 Aligned_cols=170 Identities=25% Similarity=0.319 Sum_probs=130.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG 87 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g 87 (211)
+........+...+.|+.+....|...+...++....+.|+..+.+++.+.... ++... .+ ..+++......+.++
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~ 79 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGL-RP-ALRPWLLLLLLALLG 79 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccc-cc-cccchHHHHHHHHHH
Confidence 345567788888899999999999987643677777777999998885544322 11111 11 122244667777777
Q ss_pred -HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHH-HhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230 88 -VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAV-LFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (211)
Q Consensus 88 -~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~-l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~ 165 (211)
..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|+.+++.|++++...++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~------ 147 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG------ 147 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc------
Confidence 99999999999999999999999999999999997 7779999875 589999999999988632110
Q ss_pred CCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.... ...|+++.+.++++|++|.+.+++
T Consensus 148 -----------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~ 175 (292)
T COG0697 148 -----------------GGIL-SLLGLLLALAAALLWALYTALVKR 175 (292)
T ss_pred -----------------chhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 468999999999999999999874
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.58 E-value=1.4e-13 Score=119.88 Aligned_cols=166 Identities=20% Similarity=0.207 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 028230 20 ECTTVGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTT-TVVPSFKFSILSRIILLSFIGVLSQIFGYTG 97 (211)
Q Consensus 20 ~~~wg~~~i~~K~~~~~~~~-p~~l~~~R~~~A~l~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~g 97 (211)
+++=.++.+.+....+.|.+ |..-.++=+..-.++..+....+ +++ +. .+..+++|.+.+++|++-...+++...|
T Consensus 22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~-~~~~~~~~w~y~lla~~Dv~aN~~~v~a 99 (334)
T PF06027_consen 22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYR-RGFKKW-LKVLKRPWWKYFLLALLDVEANYLVVLA 99 (334)
T ss_pred HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhc-cccccc-hhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444 55444555554455555665544 222 22 2233566777888888768889999999
Q ss_pred hhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccc
Q 028230 98 IACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLH 177 (211)
Q Consensus 98 l~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~ 177 (211)
++|||.+.+.++..+.-+++++++++++|||.++. |++|+++|++|+.+++..+.... +.
T Consensus 100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~-------------~~- 159 (334)
T PF06027_consen 100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG-------------SD- 159 (334)
T ss_pred hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc-------------cc-
Confidence 99999999999999999999999999999999875 69999999999998875442110 00
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 178 WLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 178 ~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+..+.+..+||++++.|++.||+|+|+|+|
T Consensus 160 ----~~~~~~~i~GDll~l~~a~lya~~nV~~E~ 189 (334)
T PF06027_consen 160 ----SSSGSNPILGDLLALLGAILYAVSNVLEEK 189 (334)
T ss_pred ----CCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 123455689999999999999999999975
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.51 E-value=7.6e-14 Score=104.15 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~ 91 (211)
...+.++++++||...++.|++++ ++||..-.+.|-.+..+++..+.+.. ++.+.....+.|.|..+.+-|+.+...-
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHH
Confidence 446778899999999999999997 59999999999999988888887765 4333212356788888888887669999
Q ss_pred HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
.+||.+++.-.++..+-+-.+.|+++.++++++++||++.+ +++|+++..+|+++++
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999876 5899999999998764
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.45 E-value=3e-12 Score=107.05 Aligned_cols=132 Identities=20% Similarity=0.285 Sum_probs=112.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASKGLS--YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~--p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~ 85 (211)
.+.++....+.++++|+.+.+..|...++ .+ +..+..+|+.++.+++.|+.... ++. +..+.+++..++.+|+
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 199 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL-GPN---PQALSLQWGALLYLGL 199 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc-CCC---CCcchHHHHHHHHHHH
Confidence 34678899999999999999999998753 66 44566678999999999987664 332 2235678888899999
Q ss_pred HH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhH
Q 028230 86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGA 150 (211)
Q Consensus 86 ~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv 150 (211)
++ .+.+.+++.++++++++.++.+.++.|++++++++++++|+++.+ +++|.++.+.|+
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 99 899999999999999999999999999999999999999999875 589999998886
No 17
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.37 E-value=2e-12 Score=95.91 Aligned_cols=103 Identities=23% Similarity=0.382 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc-cCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHH
Q 028230 45 AYSYPLATLALLPLPLIFRNTTTV-VPSFKFSILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAV 122 (211)
Q Consensus 45 ~~R~~~A~l~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~ 122 (211)
.+|+..+.+++..+...+ ++... .+..+++++.+....|+++ ..++.+++.++++++ +.++.+.+++|+++.+++.
T Consensus 2 a~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIR-GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHH-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 689999999988887765 32111 0223345566777889988 799999999999999 5888999999999999999
Q ss_pred HhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 123 LFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 123 l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
+++|||++++ ++.|++++++|++++..
T Consensus 80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 80 LFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 9999999876 58999999999999974
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.35 E-value=2e-11 Score=104.75 Aligned_cols=169 Identities=15% Similarity=0.044 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLS 90 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~ 90 (211)
+++..++++++||.+++..|... +.+|.++. |..++.+++..+.... ++ ++.+.+.......++-.. ...
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~----~~~~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL----PEFWALSIFLVGLLSGAFWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC----CcccccHHHHHHHHHHHHHHhh
Confidence 35778889999999999999753 68888776 8888888777665554 21 111212222222222223 677
Q ss_pred HHHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCC
Q 028230 91 QIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS 169 (211)
Q Consensus 91 ~~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~ 169 (211)
|.+++.++++++.+.|-.+.+ +.|++..+.+.+++|||.++++. ...++|++++++|++++...+++..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~-------- 142 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA-------- 142 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc--------
Confidence 899999999999999998888 88889999999999999876521 1128899999999888753321100
Q ss_pred CCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230 170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~ 210 (211)
. .....+..+|.++.+.|.++|+.|.+.-|
T Consensus 143 ------~-----~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 143 ------G-----IKSEFNFKKGILLLLMSTIGYLVYVVVAK 172 (290)
T ss_pred ------c-----cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 00002335799999999999999998644
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.24 E-value=4.3e-10 Score=96.43 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-H
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V 88 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~ 88 (211)
..+.+..+.+.++|+.+.+..|...+ ..+|...... ..++++++.|+.... +. . ...+...+...+.+|+++ .
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~-~~-~--~~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQ-AG-E--ALWHWSILPLGLAVAILSTA 220 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHc-cC-c--ccCCHHHHHHHHHHHHHHHH
Confidence 45788899999999999999998765 4788877544 466677777776554 22 1 123445555667899999 8
Q ss_pred HHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230 89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY 156 (211)
Q Consensus 89 ~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 156 (211)
+.+.++++++++++|+.++++.++.|++..++++++++|+++.. +++|.++.+.|+++....
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999875 689999999999888754
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.22 E-value=4.1e-10 Score=96.51 Aligned_cols=136 Identities=13% Similarity=0.008 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-H
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V 88 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~ 88 (211)
..+.+..+.++++|+.+.+..|... . -++....+++..++++++.++.... +.... ...+.+++..+..+|+++ .
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLS-GERLT-ALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHc-CCccc-ccCCHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999753 2 2456677889999999888886553 32111 112457788889999999 8
Q ss_pred HHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 89 ~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
+.+.+++.++++.++++++.+.++.|++++++++++++|++++. +++|.++.+.|+.++..
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875 69999999999988864
No 21
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.11 E-value=3.1e-09 Score=93.87 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhccccc---cCCCCHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSY-YVFVAYSYPLATLALLPLPLIFRNTTTV---VPSFKFSILSRIILLSFIG 87 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p-~~l~~~R~~~A~l~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~lg~~g 87 (211)
+.+.++.++++|+.+.+..|..... .|| ...+++...++++.+.+..... ++... ....+.. ...++..|+..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHHH
Confidence 6678889999999999999987664 555 4667787777777766665554 43211 0111222 22344455433
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g 158 (211)
.+.+.++++++++.+|+.++++.++.|++++++++++++|++++. +++|.++.+.|+.+....+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhh
Confidence 567779999999999999999999999999999999999999875 58999999999998875544
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.11 E-value=2.3e-09 Score=92.00 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~ 89 (211)
..+.++.+.++++|+.+.+..|...+ +.+|..... ..+++.+.+..... +... ...+.+.+..++..|+...+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~-~~~~--~~~~~~~~~~l~~~~~~t~~ 227 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS-PQPA--MVFSLPAIIKLLLAAAAMGF 227 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh-cCcc--ccCCHHHHHHHHHHHHHHHH
Confidence 34788999999999999999998654 478876532 33444444433333 2111 23456677777777743388
Q ss_pred HHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY 156 (211)
Q Consensus 90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 156 (211)
.+.+++.++++++++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+....
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhhh
Confidence 9999999999999999999999999999999999999999875 689999999999887643
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.06 E-value=7.7e-09 Score=87.45 Aligned_cols=143 Identities=15% Similarity=0.041 Sum_probs=112.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCCHHHHHHHHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP-SFKFSILSRIILLSFI 86 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lg~~ 86 (211)
+..++++..+.+.++||..+...|.. + .+|+.++...|..-+..+++.+....|+++..+. ..++|.+..+.+.+.+
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 34679999999999999999999974 4 4999999999999888777666555411111100 1123445555555555
Q ss_pred HHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (211)
Q Consensus 87 g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g 158 (211)
-+.+-..|.++.+.-.+-++|+=.+.+|++.++++.+++|||+++ .|++.+.++.+||.......|
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC
Confidence 578888999999999999999999999999999999999999975 579999999999998876443
No 24
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.03 E-value=2.2e-09 Score=92.18 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhccccccCC--------CCHHHHHH-
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPS--------FKFSILSR- 79 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~--------~~~~~~~~- 79 (211)
..+.+..++++++|+...+..|...++ ++||..+.++....+++.+.|+.... +.....+. ........
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHhhcccCchHHHHH
Confidence 458888999999999999999987651 48999999999999999999998765 32110000 00001111
Q ss_pred HHHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhc
Q 028230 80 IILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYK 157 (211)
Q Consensus 80 l~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~ 157 (211)
.+..+... ..++.+++.++++++|+.+++..+..|++++++++++++|+++.+ +++|.++.++|+.+....|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHHh
Confidence 22333323 445567889999999999999999999999999999999999875 5899999999998886443
No 25
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.02 E-value=1.9e-08 Score=86.49 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHhhcccc----ccCCCCHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKG--LSYYVFVAYSYPLATLALLPLPLIFRNTTT----VVPSFKFSILSRIILL 83 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~--~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~----~~~~~~~~~~~~l~~l 83 (211)
..+.++.+.+.++|+.+.+..|...++. .+.....++-..++.+.+....... +... .....+.+++..++.+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHH
Confidence 4588899999999999999999865432 1223334444444444333333332 2211 0013456788889999
Q ss_pred HHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 84 SFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 84 g~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
|+++ .+.+.+++.++++.+++.++.+..+.|++..++++++++|+++.. +++|.++.++|+.+...
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHhc
Confidence 9999 899999999999999999999999999999999999999999875 68999999999987753
No 26
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.01 E-value=1.9e-08 Score=83.58 Aligned_cols=157 Identities=13% Similarity=0.018 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~ 91 (211)
+++.+..+.+.-=...-+.|..... ++|-..+.+|..+++++++++..- ++ .+.+++++..+...|..-...|
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP---wr---~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP---WR---RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH---HH---hccChhhhHHHHHHHHHHHHHH
Confidence 4555555544333334456766664 999999999999999999887532 22 3457888999999998768889
Q ss_pred HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCC
Q 028230 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTH 171 (211)
Q Consensus 92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 171 (211)
.+||.+++..+-+.+..+.++-|+.+.+++. | | ....+-+.+++.|..++. ..++
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R-r--------~~d~vwvaLAvlGi~lL~-p~~~------------ 140 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSS---R-R--------LRDFVWVALAVLGIWLLL-PLGQ------------ 140 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhc---c-c--------hhhHHHHHHHHHHHHhhe-eccC------------
Confidence 9999999999999999999999999877642 1 1 124566889999998885 2221
Q ss_pred ccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 172 STNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+..+.| ..|..+-+++..||+.|.+.-++
T Consensus 141 ----------~~~~lD-p~Gv~~Al~AG~~Wa~YIv~G~r 169 (292)
T COG5006 141 ----------SVWSLD-PVGVALALGAGACWALYIVLGQR 169 (292)
T ss_pred ----------CcCcCC-HHHHHHHHHHhHHHHHHHHHcch
Confidence 011222 47999999999999999998654
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.92 E-value=5.1e-09 Score=89.17 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYY----VFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~----~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~ 85 (211)
.++....+.++++|+.+.+..|...+ +.+|. ....+.+.+.++.+.++.... +++. .......+..+...+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR-HGRS--MFPYARQILPSATLGG 218 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH-hccc--hhhhHHHHHHHHHHHH
Confidence 34666778899999999999997533 35543 223333333322222322222 1111 1112233445566777
Q ss_pred HH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHH
Q 028230 86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (211)
Q Consensus 86 ~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 152 (211)
+. .+.+.++++++++.+++.++.+.++.|++..++++++++|++++. +++|.++.++|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 77 888999999999999999999999999999999999999999875 58999999999865
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.91 E-value=2.9e-09 Score=92.66 Aligned_cols=99 Identities=23% Similarity=0.416 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP 167 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~ 167 (211)
+..|+.++.++.+|+++..+++.++.-+||..++.++..||+++. |.+++++++.|+++++..+..
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~-------- 235 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK-------- 235 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc--------
Confidence 789999999999999999999999999999999999999999874 799999999999988743221
Q ss_pred CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
+ . ++....+..+|+++.+.+++.||+|+++.||
T Consensus 236 ----~---~----~~~~a~~~llG~llaL~sA~~YavY~vllk~ 268 (416)
T KOG2765|consen 236 ----Q---N----SDLPASRPLLGNLLALLSALLYAVYTVLLKR 268 (416)
T ss_pred ----c---c----ccCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 0223445679999999999999999999875
No 29
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.87 E-value=7.6e-08 Score=74.19 Aligned_cols=134 Identities=22% Similarity=0.327 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhccccccC---CC-------CHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP---SF-------KFS 75 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~------~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~---~~-------~~~ 75 (211)
+++..+.+.++-+...+..|..+++ ..+|.++..+-...+.++++|.+... |+....+ .. ..+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHH
Confidence 3567788999999999999988865 79999999999999999999998876 5432100 00 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHH
Q 028230 76 ILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (211)
Q Consensus 76 ~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 152 (211)
.+..++..|+++...+...+.-++++||...++..+.-.+.+.+++.++++|+++.+ ++.|+++++.|+++
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 344455566666899999999999999999999999999999999999999999875 69999999999864
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.87 E-value=2.1e-10 Score=95.88 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~ 91 (211)
+.+++.++ .++.+..++.+..++ .+|.+....|++.-.++..|..... ......|+ ..| +++++-|+.|+...
T Consensus 39 gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~-~~~v~gp~-g~R--~~LiLRg~mG~tgv 111 (346)
T KOG4510|consen 39 GLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYY-MQPVIGPE-GKR--KWLILRGFMGFTGV 111 (346)
T ss_pred CceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEE-eeeeecCC-CcE--EEEEeehhhhhhHH
Confidence 34444555 666666666665553 7999999999887777777765543 21111122 222 24566777774344
Q ss_pred HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
.+.|++++|.|-+.|++|....|++|.+++++++|||.++. +.+|..+.+.||++++
T Consensus 112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV 168 (346)
T ss_pred HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe
Confidence 56678999999999999999999999999999999999865 5899999999999987
No 31
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.83 E-value=1.7e-07 Score=82.50 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhccccccC----------CC
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP----------SF 72 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~------~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~----------~~ 72 (211)
+..+.++.++++++|+...+..|..+++ .+++..+..+-..+++++++|+.... |...... ..
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~ 270 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNY 270 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhccccc
Confidence 3568899999999999999999998753 26677777777889999999987654 3211000 00
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230 73 KFSILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (211)
Q Consensus 73 ~~~~~~~l~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~ 151 (211)
........++.+.+. ..++.+.|.+++.++|..+++..++-|+++.++++++++|++++. +++|.++.+.|+.
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~ 344 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGAL 344 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHH
Confidence 111111222223333 455556667999999999999999999999999999999999875 6999999999998
Q ss_pred HHh
Q 028230 152 VVV 154 (211)
Q Consensus 152 li~ 154 (211)
+..
T Consensus 345 lYs 347 (350)
T PTZ00343 345 LYS 347 (350)
T ss_pred HHh
Confidence 764
No 32
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.78 E-value=3.6e-07 Score=78.76 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=115.8
Q ss_pred HHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028230 26 LNTLFKAAAS-KGLS--YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSS 102 (211)
Q Consensus 26 ~~i~~K~~~~-~~~~--p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~ts 102 (211)
+.+.-+.... .+.. |..+++..+....++-.+..... +++ +.++..++..+..+++-.+...+-+.+++|.|
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~ 89 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF-KFP----KSRKIPLKKYAILSFLFFLASVLSNAALKYIS 89 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccc----CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444443 3344 88999999999888777665543 211 12233455667777766888899999999999
Q ss_pred hhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCC
Q 028230 103 PTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGS 182 (211)
Q Consensus 103 a~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
...-.++-++.|+.+++++.+++++|.+++ |+.++++..+|+++....+.+.... . +
T Consensus 90 ~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~------------~-----~ 146 (303)
T PF08449_consen 90 YPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS------------S-----N 146 (303)
T ss_pred hHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc------------c-----c
Confidence 999999999999999999999999999765 6899999999998887543321100 0 1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 183 PSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 183 ~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
....++..|+++++.+.++-+...+.|+|
T Consensus 147 ~~~~~~~~G~~ll~~sl~~~a~~~~~qe~ 175 (303)
T PF08449_consen 147 SSSFSSALGIILLLLSLLLDAFTGVYQEK 175 (303)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 12233345999999999999999999975
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.70 E-value=9.4e-07 Score=74.08 Aligned_cols=132 Identities=21% Similarity=0.208 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVA-YSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~-~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g- 87 (211)
..+..+.+.+.++|+.+.+..|... ..++..... +.+..+..+..+.... .+. .....+++..+...|+++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~g~~~~ 225 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG---APILSRAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc---ccCCHHHHHHHHHHHHHHH
Confidence 5788899999999999999999765 367777777 4444333333333221 111 133567888899999999
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
...+.+++.+++..+++.++.+..+.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999875 5899999999998875
No 34
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.69 E-value=5.6e-07 Score=77.27 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 028230 15 ATVAVECTTVGLNTLFKAAASKG-LSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIF 93 (211)
Q Consensus 15 ~l~~~~~~wg~~~i~~K~~~~~~-~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l 93 (211)
..+.++++|+.+.+..|...++. .++.....+-..++...+.++... ..... ...+...+..+...|+.+.+.+.+
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS--STSHM-GQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC--Ccccc-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998753221 223333444444444433322110 00000 111122233344455544788999
Q ss_pred HHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 94 GYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 94 ~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
++.++++.+|+.++.+.++.|++..++++++++|++++. +++|.++.++|+.++.
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875 5899999989988776
No 35
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.58 E-value=1.5e-06 Score=74.55 Aligned_cols=134 Identities=14% Similarity=0.017 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYP---LATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~---~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~ 86 (211)
.|+....+++.+.++.+.+..|.. +.||.+..+.... +++.++.+.. + +. + +. ..+......+.|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~--~-~~-~~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-LA--K-PL-KKYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-cc--c-ch-HHHHHHHHHHHHHH
Confidence 679999999999999999999964 3899998655554 4444433332 1 11 1 22 22333334446666
Q ss_pred HHHHHHHHHHhhh-ccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 87 GVLSQIFGYTGIA-CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 87 g~~~~~l~~~gl~-~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
-.+.+.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++. +.-.+|.++.+.|+.++..
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHhc
Confidence 5677778999999 99999999999999999999999999999987641 0111899999999987753
No 36
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.41 E-value=1.5e-06 Score=64.28 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=61.2
Q ss_pred HHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 81 ILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 81 ~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
...++++ ...+.++..+++..|.+.|..+.++.|+++.++++++++||++++ |++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3445577 889999999999999999999999999999999999999999876 5999999999998875
No 37
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.36 E-value=8.9e-06 Score=61.84 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VL 89 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~ 89 (211)
++|+.++.+.++=+...+..|.++++ .++.+.... . . ...... . . | ...+.+|+.+ .+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~~~--~--~-p-------~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALLAF--G--L-A-------LRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHHHH--h--c-c-------HHHHHHHHHHHHH
Confidence 36788888888888899999999875 544432221 1 1 110000 0 0 1 1246788888 99
Q ss_pred HHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHH--hhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL--FRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l--~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
.+.++..+++..+++.|.-+.+..|+++.+.++. +++|+++++ |++|+++.++|+.++.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888888874 899999876 5999999999999886
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.28 E-value=1.4e-05 Score=66.71 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=108.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHH
Q 028230 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (211)
Q Consensus 7 ~~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~ 86 (211)
.-|..+..+.+.+..||..+-+.+|.+-+. .+--.-+..-+.+|+++.+|+.... .... -.+..-...-+..|++
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~-ag~~---l~~p~ll~laLgvavl 218 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ-AGPA---LFSPSLLPLALGVAVL 218 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh-cchh---hcChHHHHHHHHHHHH
Confidence 445667888899999999999999987543 5666777888999999999998754 2211 1233444555678889
Q ss_pred H-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (211)
Q Consensus 87 g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~ 151 (211)
+ .+.+.+...+++..++..-+++.++.|.+.++.++++++|+++.+ |+.|+...+++..
T Consensus 219 SSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa 278 (292)
T COG5006 219 SSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA 278 (292)
T ss_pred hcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence 9 999999999999999999999999999999999999999999876 5777777766654
No 39
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.11 E-value=3.9e-05 Score=64.44 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHH
Q 028230 73 KFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (211)
Q Consensus 73 ~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 152 (211)
++||..++.+=+++-++.+.+.|.++++.+|+.=-++.++-.++|++++.+++|+|++++ ||+++.+-+.|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 356777777777766889999999999999999999999999999999999999999875 58999999999988
Q ss_pred HhhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHc
Q 028230 153 VVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILL 209 (211)
Q Consensus 153 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq 209 (211)
+.....+... .+ +.+..+.+....+...|.++++.++++-++-.|..
T Consensus 87 v~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~ 133 (244)
T PF04142_consen 87 VQLSSSQSSD-NS---------SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYF 133 (244)
T ss_pred eecCCccccc-cc---------cccccccccccchhHhHHHHHHHHHHHHHHHHHHH
Confidence 7532221100 00 00000001123445799999999999888766643
No 40
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.002 Score=56.29 Aligned_cols=174 Identities=14% Similarity=0.127 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhccc---cccCCC------CHHHHH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIFRNTT---TVVPSF------KFSILS 78 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~---~~p~~l~~~R~~~A~l~l~~~~~~~~~~~---~~~~~~------~~~~~~ 78 (211)
.-++.++...+.+++.....|+.-..+ +.|-+.++.--.+-.++...+.++. +|+ +....+ .++|..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHH
Confidence 456788888999999999999987655 6777888777777766655555443 221 110111 234555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230 79 RIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (211)
Q Consensus 79 ~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g 158 (211)
.+.+=+++-++.|.++|.++.+.+|+.-.+..++=-+-|+++..+++++|++++ ||..+++.++|+.++.....
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC
Confidence 555555555777789999999999999999999999999999999999999876 58999999999998863222
Q ss_pred CcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 028230 159 PTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSI 207 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~v 207 (211)
+.- + +. +.....+...|...++.+|+.-++-.|
T Consensus 168 ~~~----~---------a~---~~~~~~n~~~G~~avl~~c~~SgfAgv 200 (345)
T KOG2234|consen 168 SPT----G---------AK---SESSAQNPFLGLVAVLVACFLSGFAGV 200 (345)
T ss_pred CCC----C---------cc---CCCcccchhhhHHHHHHHHHHHHHHHH
Confidence 110 0 00 012345567899999999988766443
No 41
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.89 E-value=3.1e-07 Score=76.67 Aligned_cols=160 Identities=22% Similarity=0.187 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028230 19 VECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGI 98 (211)
Q Consensus 19 ~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl 98 (211)
+-++-+.++.....+-..-=.|..=.|+-+..-+++-.|+..++ |+. -+..|.+.+++++.-.-.|++...+.
T Consensus 27 SL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR--~~~-----~~~~~~hYilla~~DVEaNy~vV~Ay 99 (336)
T KOG2766|consen 27 SLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFR--RKY-----IKAKWRHYILLAFVDVEANYFVVKAY 99 (336)
T ss_pred HHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhh--hHH-----HHHHHHHhhheeEEeecccEEEeeeh
Confidence 33344444444443322112455667788888888888888775 321 12345567788876666677788999
Q ss_pred hccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCcccc
Q 028230 99 ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHW 178 (211)
Q Consensus 99 ~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (211)
|||+-+...++-.-.-..+.+++++++|.|-++ .|+.|+++|+.|+..+++++ . |.++
T Consensus 100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrl------mki~gV~iCi~GvvmvV~sD--V----------~agd---- 157 (336)
T KOG2766|consen 100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRL------MKISGVVICIVGVVMVVFSD--V----------HAGD---- 157 (336)
T ss_pred hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhh------heeeeEEeEecceEEEEEee--e----------cccc----
Confidence 999999999887755556678899999988754 57999999999999887542 1 1100
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230 179 LMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 179 ~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~ 210 (211)
..++.|..+||+++++++-+||+-++.+.
T Consensus 158 ---~aggsnp~~GD~lvi~GATlYaVSNv~EE 186 (336)
T KOG2766|consen 158 ---RAGGSNPVKGDFLVIAGATLYAVSNVSEE 186 (336)
T ss_pred ---ccCCCCCccCcEEEEecceeeeeccccHH
Confidence 22345667999999999999998877653
No 42
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.72 E-value=0.00035 Score=61.25 Aligned_cols=141 Identities=13% Similarity=-0.007 Sum_probs=104.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CHHHHHHHHHHH
Q 028230 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLS 84 (211)
Q Consensus 7 ~~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~lg 84 (211)
.++.++.+.++.+++++|.+.+.-|...++ .|+.++...=-+.+.++..+..... |++.. ... +.+....++..+
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i-~~~~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL-ERSGI-ESIHWTSQVIGLLVGYA 240 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhh-hccCCChhhHHHHHHHH
Confidence 346788999999999999999999998875 7888877766677777777776666 66543 222 333332222222
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230 85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY 156 (211)
Q Consensus 85 ~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 156 (211)
+..+....+.-..+++++|+...+=.-+..++..++..++.+|++++. .++|.++.++|.++....
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence 222556667778899999987777667889999999999999999874 588999999999877643
No 43
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.63 E-value=0.00025 Score=61.65 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=110.1
Q ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 028230 27 NTLFKAAAS--KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF-KFSILSRIILLSFIGVLSQIFGYTGIACSSP 103 (211)
Q Consensus 27 ~i~~K~~~~--~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa 103 (211)
.+..|..++ +.--|..++..++..+.+.+...-... ..+ . ++. ++..+..++-+|++-++...+-+.++++.+.
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~-~-~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~V 109 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVP-P-SKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPV 109 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCC-C-CccccccchHHHHHHHHHHHHHHHhcchhhhccch
Confidence 345688877 445688888888888777665554332 221 1 222 3345667788888778888889999999999
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCC
Q 028230 104 TLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP 183 (211)
Q Consensus 104 ~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
+..-.+=++.|+++.++++++.+|+.+++. ...++....|+.+-+.. .
T Consensus 110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~--------------------------e 157 (316)
T KOG1441|consen 110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT--------------------------E 157 (316)
T ss_pred hHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec--------------------------c
Confidence 999999999999999999999999997653 55666667777654321 1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 184 SVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 184 ~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.+.| ..|-...+.+.++.+...|++++
T Consensus 158 ~~fn-~~G~i~a~~s~~~~al~~I~~~~ 184 (316)
T KOG1441|consen 158 LSFN-LFGFISAMISNLAFALRNILSKK 184 (316)
T ss_pred cccc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233 47999999999999999998864
No 44
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.62 E-value=0.0018 Score=55.73 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhccccccC--CCCHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLI--FRNTTTVVP--SFKFSILSRIILLSFI 86 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~-~~~~p~~l~~~R~~~A~l~l~~~~~~--~~~~~~~~~--~~~~~~~~~l~~lg~~ 86 (211)
+++.++++.++-|...+..+..++ ++.+|.+..++-...+.++.++.... .++-.+..+ ......+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 889999999999999999988774 57999999999999998888777666 211111000 0012334556666666
Q ss_pred HHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY 156 (211)
Q Consensus 87 g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 156 (211)
+...+.+.+.-.+..+|...+++..+--+++.+++.+++++++++. +++|+++.+.|..+-...
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHHh
Confidence 6666777777889999999999999999999999999999999875 689999999999877643
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.61 E-value=0.002 Score=53.92 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028230 15 ATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFG 94 (211)
Q Consensus 15 ~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~ 94 (211)
..+.++++|+.+.+..|...+. ++......-.. ...+..+..... ...........++|..++..|+++.+.+.++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~ 225 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPVAIYYLLQT-DFATVQQTNPFPIWLLLVLAGLITGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHHHHHHHHHh-ccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999975432 33332222211 111111111111 1100001112357888888887667889999
Q ss_pred HHhhhccchhHHHHhhhhhhHHHHHHHHHh
Q 028230 95 YTGIACSSPTLSSAISNLTPAFTFTLAVLF 124 (211)
Q Consensus 95 ~~gl~~tsa~~as~i~~~~Pv~~~lla~l~ 124 (211)
+.|+++.+|+.++.+.++.|+++.+++.+.
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998653
No 46
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.49 E-value=0.0001 Score=59.74 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP 167 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~ 167 (211)
++.+++|..+++..||+.++.+..++-.|+.+++++.+++|+.-- |++..++++.|++.+. |..
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmia-y~D--------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIA-YAD--------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEE-ecc---------
Confidence 567899999999999999999999999999999999999998653 6899999999998775 321
Q ss_pred CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~ 210 (211)
....+...|..+.++|+..-++|-|+-|
T Consensus 128 ---------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK 155 (290)
T KOG4314|consen 128 ---------------NEHADEIIGIACAVGSAFMAALYKVLFK 155 (290)
T ss_pred ---------------chhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1223346899999999999999988644
No 47
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.26 E-value=0.0039 Score=53.17 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhcccccc---C-------CC--CHHHHHHHHHHH
Q 028230 24 VGLNTLFKAAAS---KGLS----YYVFVAYSYPLATLALLPLPLIFRNTTTVV---P-------SF--KFSILSRIILLS 84 (211)
Q Consensus 24 g~~~i~~K~~~~---~~~~----p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~---~-------~~--~~~~~~~l~~lg 84 (211)
+.|.+..|++=+ +|-| |+..+..-|+.=.+++..+.+.+ .|...+ . +- +.+.. ++..=
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir-~~sn~~g~~s~~~~ilsq~~~pf~p~--lfl~P 92 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR-LRSNGQGVSSDLDSILSQDSSPFNPV--LFLPP 92 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccccccccccccCCCCcc--eecCh
Confidence 467788898642 2444 56555555666667777776655 332210 0 00 11111 11222
Q ss_pred HHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccC
Q 028230 85 FIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL 163 (211)
Q Consensus 85 ~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~ 163 (211)
.+. .....+.|.|+.+|+|+.--.+-...-+|+.+++.-+++.+++.+ ||+|+....+|.+.+...+ .
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d--~--- 161 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD--V--- 161 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee--c---
Confidence 334 556778889999999998877777888999999999999998765 6899999999998774221 1
Q ss_pred CCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230 164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~ 210 (211)
|..+.+ ...-.+.+.||++++.+-+.-|.-.+.-.
T Consensus 162 -------~~~~~p-----~~d~s~iitGdllIiiaqiivaiQ~v~Ee 196 (372)
T KOG3912|consen 162 -------HLVTDP-----YTDYSSIITGDLLIIIAQIIVAIQMVCEE 196 (372)
T ss_pred -------ccccCC-----ccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 000011 11123457899999999998888776543
No 48
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.20 E-value=0.0013 Score=57.28 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=107.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhccccc---cC-CCCHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAA---SKGLSYYVFVAYSYPLATLALL-PLPLIFRNTTTV---VP-SFKFSILSR 79 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~---~~~~~p~~l~~~R~~~A~l~l~-~~~~~~~~~~~~---~~-~~~~~~~~~ 79 (211)
-++.+.+....+.+..+...+..|..+ ++.++++.+..+---++..+++ |+.... ++... .. ..+.. ...
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~-~~~ 237 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVT-FLI 237 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchh-hHH
Confidence 357789999999999999999999988 3469999999999999999998 987765 43221 01 12223 334
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 80 l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
..+.+.+.+..|...|.-+..|||-+=++....==.++...++++++|++++. +..|..+++.|+.+-.-
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence 44455444888899999999999998887777666666677888999988775 58999999999987753
No 49
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.13 E-value=0.0044 Score=52.71 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHH
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGV 88 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~ 88 (211)
..|+++.++++.+.+..+.++.|.. +++|.+..+=. .++-++-..+.... .++ +..+++.++ -.+-|++=.
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~-~~~---~~~~k~~~~-nil~G~~w~ 206 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF-SKK---PFFEKKSWK-NILTGLIWG 206 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc-ccc---cccccchHH-hhHHHHHHH
Confidence 4678999999999999999998863 47887766644 33322222221111 111 111223332 344555547
Q ss_pred HHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230 89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (211)
Q Consensus 89 ~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~ 151 (211)
+.+.+++.+.+....+.+=.+..+.+++..+-+.+++||+=++|+. ...++|.++.++|++
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence 7788899999999999999999999999999999999999776652 123456666666654
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.03 E-value=0.018 Score=50.72 Aligned_cols=175 Identities=15% Similarity=0.066 Sum_probs=105.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHH--HHHHHHHHHHHHHHHHH--Hhhccccc--cCCCCHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASKGLS--YYVF--VAYSYPLATLALLPLPL--IFRNTTTV--VPSFKFSILSR 79 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~--p~~l--~~~R~~~A~l~l~~~~~--~~~~~~~~--~~~~~~~~~~~ 79 (211)
+-.-+++..+++.++||++++-.|.. +. -+ -+.. .++.+ ++.|+.. .. .+.-. ....+.+.+..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v~gi~~w-----l~~~~~~g~~~-~~~f~~~~~~~~~~~~~~ 75 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSVGGIFSW-----LILPWLIAALL-LPDFWAYYSSFSGSTLLP 75 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHHHHHHHH-----HHHHHHHHHHH-hhhHHHHHHhcCHHHHHH
Confidence 34568999999999999999999973 32 22 1111 11111 2222111 11 11000 01223444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhh---cccccccccceehHHHHhhhHHHHhh
Q 028230 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKL---ALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 80 l~~lg~~g~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~---~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
-++.|.+=.+.|..++.++++...+.+--+ +.+.=+...++..++++|=- +-++ +..-.+|+++.++|+.+...
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHH
Confidence 444444447889999999999999987644 45778888888888888643 2211 23357799999999988874
Q ss_pred hcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 028230 156 YKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWS 206 (211)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~ 206 (211)
......... .. ......+..+|..+.+.+.+.+++|.
T Consensus 154 Ag~~k~~~~----------~~----~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 154 AGQLKERKM----------GI----KKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred hhhhccccc----------cc----ccccccchHhHHHHHHHHHHHHHHHH
Confidence 211110000 00 00123456799999999999999998
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.00 E-value=0.013 Score=49.95 Aligned_cols=115 Identities=18% Similarity=0.094 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230 75 SILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (211)
Q Consensus 75 ~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 153 (211)
+.+..-++.|++=.+.|..++.+.++...+.+-=+.. ..=+.+.+.++++++|--+.+++ ..-..++++.++|+.+-
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence 5555555555544889999999999999998876654 55566788899999997664431 11234667778888776
Q ss_pred hhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230 154 VLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 154 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~ 210 (211)
+..+++.. . .....+...|.+.++.+.+.|..|.++.+
T Consensus 121 s~~~~~~~--------------~-----~~~~~~~~kgi~~Ll~stigy~~Y~~~~~ 158 (269)
T PF06800_consen 121 SYQDKKSD--------------K-----SSSKSNMKKGILALLISTIGYWIYSVIPK 158 (269)
T ss_pred cccccccc--------------c-----cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 53322110 0 11234566899999999999999998865
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.80 E-value=0.02 Score=42.14 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=53.5
Q ss_pred HHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230 85 FIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (211)
Q Consensus 85 ~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 153 (211)
+.+ ...++++..++++.|.+.| ++.....-+.+.+.+.++++|++++. |++|+.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 445 7778888999999999988 55566788888999999999999875 689999999999876
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.77 E-value=0.0052 Score=46.06 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHH-HHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 82 ~lg~~g-~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
+..+.+ ...++++..++++.+.+.|=.+ ....-+.+.+++.++++|+++++ |++|+.+.++|++.+-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 345556 7888899999999999988444 56888889999999999999875 69999999999988853
No 54
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0074 Score=44.14 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=56.5
Q ss_pred HHHHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 83 LSFIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 83 lg~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
+.+.+ ...+.++-.++++.+.+.| ++....--+.+.+.++++++|++++. |++|+.+.++|++.+-
T Consensus 35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 34556 7788889999999999988 56677888899999999999999875 6999999999998774
No 55
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.14 Score=44.29 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHH-HHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASK-GLSYYVF-VAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l-~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~ 89 (211)
+....+.-++.-....++-|.++.. ++|...+ ..++.+...+.+...- +. |-...+++++++.+..+-..++-.+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~--~lv~~~~l~~~~~kk~~P~~~lf~~ 89 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLK-RL--GLVNFRPLDLRTAKKWFPVSLLFVG 89 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-Hh--ceeecCCcChHHHHHHccHHHHHHH
Confidence 3444444455555666778888865 3443322 2377776666554442 21 2111245667777777766666556
Q ss_pred HHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCC
Q 028230 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS 169 (211)
Q Consensus 90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~ 169 (211)
....--.+++|.+...-+++=+.+|+++++...++++.+++.+ .+..+....+|.......
T Consensus 90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~------------- 150 (314)
T KOG1444|consen 90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT------------- 150 (314)
T ss_pred HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc-------------
Confidence 6666668899999999999999999999999999999766543 355566666665444321
Q ss_pred CCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
..+.+ ..|..+++.++++=+.|.+.-||
T Consensus 151 -------------d~sf~-~~gY~w~~~n~~~~a~~~v~~kk 178 (314)
T KOG1444|consen 151 -------------DLSFN-LRGYSWALANCLTTAAFVVYVKK 178 (314)
T ss_pred -------------cceec-chhHHHHHHHHHHHHHHHHHHHH
Confidence 11122 35899999999999999887653
No 56
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.65 E-value=0.011 Score=43.73 Aligned_cols=67 Identities=24% Similarity=0.187 Sum_probs=54.4
Q ss_pred HHHHH-HHHHHHHHHhhhccchhHHH-HhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 83 LSFIG-VLSQIFGYTGIACSSPTLSS-AISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 83 lg~~g-~~~~~l~~~gl~~tsa~~as-~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
..+.+ .+.+.++..+++..|.+.|= +.....-+.+.++++++++|++++. |++|+.+.++|++.+..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 34556 77777888889998888874 4455777788899999999999875 69999999999998853
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.59 E-value=0.1 Score=44.64 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028230 18 AVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT-VVPSFKFSILSRIILLSFIGVLSQIFGYT 96 (211)
Q Consensus 18 ~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~lg~~g~~~~~l~~~ 96 (211)
..++-||.++..=|.. ++|+.+=.+.-...-..+-+.+.++. +-.. ....-+.+++..+...|...++.-.+|..
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l-~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFL-ADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHH-hcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 3456677777766642 36776655555444433333333333 2111 00112346777788888888899999999
Q ss_pred hhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 97 GIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 97 gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
|-+..+-+.-+++++..|.+.++++.++++|+++.- |.+.-++.-+|.++..
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999753 5777777777776665
No 58
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.59 E-value=0.0019 Score=54.70 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS 90 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~ 90 (211)
++..+.+.+.++-+..+++.|+.-+ ..+.+.-..+=-+++.+.-+.....- ..-.+ |. ..+|+..+..+|++|++.
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~i-g~~~l-P~-cgkdr~l~~~lGvfgfig 266 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASI-GAVQL-PH-CGKDRWLFVNLGVFGFIG 266 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhc-cceec-Cc-cccceEEEEEehhhhhHH
Confidence 3456667777777788888887533 35555444444444433332222211 22222 33 567888888999999999
Q ss_pred HHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 91 ~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
|++...|+|.--|+-.+++.++.-++.++.-.++++|-+|++. +.|.++.+.-.+..+
T Consensus 267 QIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws------~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 267 QILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWS------WVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHH------hhceeeeehhHHHHH
Confidence 9999999999999999999999999999999999999998875 555555544444443
No 59
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.47 E-value=0.021 Score=49.39 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g- 87 (211)
...+....+.++++-+......|.+..+ .+. ...| ++ .. ++...++ .....|+.-
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~-~~-~~~~l~~--~~W~~G~~~~ 60 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AG-SG-GRSYLRR--PLWWIGLLLM 60 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------cc-ch-hhHHHhh--HHHHHHHHHH
Confidence 3457777777888888888888876542 111 0000 00 00 0000111 233456666
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY 156 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 156 (211)
.+.+.+.+.++.+.|++..+-+....=++.++++..+++||++++ .+.|+++++.|..+++..
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF 123 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence 667778889999999999999999999999999999999999875 589999999999877643
No 60
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.43 E-value=0.0063 Score=45.12 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 028230 17 VAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGY 95 (211)
Q Consensus 17 ~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~~l~~ 95 (211)
+++.++||.+.++.|.+.+ +.++..-.. |..--... .. +++.+ ...+.- -.....|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----Ll-------------~n~~y--~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----LL-------------LNPKY--IIPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----HH-------------HhHHH--HHHHHHHHHHHHHHH
Confidence 4578999999999999875 355554431 31111111 01 11111 234444 56677899
Q ss_pred HhhhccchhHHHHhh-hhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230 96 TGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (211)
Q Consensus 96 ~gl~~tsa~~as~i~-~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 153 (211)
..+..++-+.+.-+. ++.=++|++.++++.+|..+++ .++|+.+.+.|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 999999999998885 6788888888877766665543 589999999998653
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.43 E-value=0.012 Score=43.06 Aligned_cols=64 Identities=5% Similarity=0.046 Sum_probs=54.8
Q ss_pred HHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 85 FIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 85 ~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
+.+ ...++++..+++..|.+.| ++....--+.+.+++.++++|++|+. |++|+.+.+.|++.+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 556 7888889999999999988 55566888889999999999999875 6899999999998774
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.36 E-value=0.15 Score=44.98 Aligned_cols=146 Identities=16% Similarity=0.002 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHHHH-HHHhhcc-cccc----CCC
Q 028230 9 EALLLSATVAVECTTVGLN-------TLFKAAASKGLSYYVFVAYSYP---LATLALLPL-PLIFRNT-TTVV----PSF 72 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~-------i~~K~~~~~~~~p~~l~~~R~~---~A~l~l~~~-~~~~~~~-~~~~----~~~ 72 (211)
..|+.+.++++.+..+..+ +.-+.+.+.+.+|.....-.+. ++..+.-++ ..+.-+| ++.. ...
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 4678899999999888888 6666555567888876666665 555544332 2211011 1110 011
Q ss_pred CHHHHHHH-HHHHHHH---HHHHHHHHHhhhccchhHHHH---hhhhhh-HHHHHHHHHhhhhhhcccccccccceehHH
Q 028230 73 KFSILSRI-ILLSFIG---VLSQIFGYTGIACSSPTLSSA---ISNLTP-AFTFTLAVLFRMEKLALRTLSTQAKIIGTM 144 (211)
Q Consensus 73 ~~~~~~~l-~~lg~~g---~~~~~l~~~gl~~tsa~~as~---i~~~~P-v~~~lla~l~~~E~~~~~~~~~~~~~~Gi~ 144 (211)
+++.+.+- +...+-| ...+.++..|-+..+.+.+.+ +..-.+ ++..+-+. ++||+=+-.++.-+.-++|++
T Consensus 252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v 330 (345)
T PRK13499 252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV 330 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence 22222232 2222222 456667777777775555544 553444 55555555 699987632222345677999
Q ss_pred HHhhhHHHHhh
Q 028230 145 VSISGALVVVL 155 (211)
Q Consensus 145 l~~~Gv~li~~ 155 (211)
+-+.|+.++..
T Consensus 331 liI~g~~lig~ 341 (345)
T PRK13499 331 VIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHhh
Confidence 99999988763
No 63
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.17 E-value=0.17 Score=38.71 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHH-
Q 028230 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFT- 117 (211)
Q Consensus 39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~- 117 (211)
+|+.-++.-+..+.+++..+.... +++.. +..+..+| +...-|++|..+-.+........+++++..+.-+.=++.
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~-~~~~~-~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s 105 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLIT-GRPSL-ASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS 105 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh-ccccc-chhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 599999999999999888887765 33222 22222223 334477777777778888899999998887766544444
Q ss_pred HHHHHH--h--hhhhhcccccccccceehHHHHhhhHHH
Q 028230 118 FTLAVL--F--RMEKLALRTLSTQAKIIGTMVSISGALV 152 (211)
Q Consensus 118 ~lla~l--~--~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 152 (211)
.++.++ + -+++++ ..|++|+++.++|+.+
T Consensus 106 l~iD~fG~fg~~~~~~~------~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 106 LLIDHFGLFGAPKRPFS------LRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHccccCCCCCCCC------HHHHHHHHHHHHHHhC
Confidence 444553 2 234444 3579999999999863
No 64
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.88 E-value=0.022 Score=40.55 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHH
Q 028230 84 SFIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMV 145 (211)
Q Consensus 84 g~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l 145 (211)
.+.+ .....++..++++.+.+.| ++...+..+.+.+.+.++++|++|++ |++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 3445 7778899999999999999 66677999999999999999999876 4677654
No 65
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.91 E-value=0.052 Score=46.88 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhccc
Q 028230 71 SFKFSIL-SRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (211)
Q Consensus 71 ~~~~~~~-~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~ 132 (211)
+.+++|. +++.-.|+.++..-.+-+++++|++.+.=+..=+..|+|+.+++.++.-||.++.
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~ 139 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA 139 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH
Confidence 4566654 4556677766788889999999999998888889999999999999999999763
No 66
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.13 E-value=0.31 Score=39.82 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230 85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (211)
Q Consensus 85 ~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~ 151 (211)
+.....+.+...-++|.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 333666778889999999999999999999999999999999999865 5889888888764
No 67
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=0.54 Score=40.79 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhccc----cccCCCCHHHHHHHHHHHH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTT----TVVPSFKFSILSRIILLSF 85 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~----~~~~~~~~~~~~~l~~lg~ 85 (211)
.+|..+....+.-....+..|...+. +.+-+.+.+|--+.+.+.+..+.+..+|.+ ..........+..+.+-++
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 46777777788888888888887653 688889999999999888877765551211 0000112334556677777
Q ss_pred HHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 86 ~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
+|++-+++-++..+.+||..-++.-...=..+.+...++.+++.++ ..++|+.+++.|-+.-.
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence 7777788889999999999888888666666666667777888875 46899999999987665
No 68
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.76 E-value=0.47 Score=42.17 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=97.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhccccc--cCCCCHHHHHHHHH
Q 028230 8 REALLLSATVAVECTTVGLNTLFKAAASK---GLSYYVFVAYSYPLATLALLPLPLIFRNTTTV--VPSFKFSILSRIIL 82 (211)
Q Consensus 8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~---~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~ 82 (211)
+...+.++.+++++.+|.+.+..|.-.++ .++--.+-.+=-++..++++|..+.. ..-.+ .+-++..+...++.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccCcccCCCCceeEeeeH
Confidence 34668889999999999999999975543 24444444455556677777766543 21111 01123344556778
Q ss_pred HHHHH-HHHHHHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 83 LSFIG-VLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 83 lg~~g-~~~~~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
.+++| ++.-+++..|.-.|++-.+++=++ ++|+ .++.-.++.+.++++ ..++|.+..++|-+.+..
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~------~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSA------LYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCH------HHHHHHHHHHHHHhheec
Confidence 89999 999999999999999999988777 4555 445556665666654 578999999999877763
No 69
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.46 E-value=0.35 Score=40.58 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCC
Q 028230 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGP 159 (211)
Q Consensus 80 l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~ 159 (211)
...+++--.+.+..-+.++||.+=-...+=-++-|+=+++++.++.|++-+|+ |...++..++|+++.. ++.+
T Consensus 88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~ 160 (337)
T KOG1580|consen 88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKEN 160 (337)
T ss_pred HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-cccc
Confidence 34444422556667788999999888888888999999999999999988775 5889999999998875 6643
Q ss_pred cccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHH
Q 028230 160 TIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFL 201 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~ 201 (211)
... +....+...|.++++.|---
T Consensus 161 Kv~-------------------g~e~~t~g~GElLL~lSL~m 183 (337)
T KOG1580|consen 161 KVG-------------------GAEDKTFGFGELLLILSLAM 183 (337)
T ss_pred ccC-------------------CCcccccchHHHHHHHHHHh
Confidence 221 12234456788888876543
No 70
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=0.065 Score=46.49 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g- 87 (211)
...+....+.+.++-|.++++-|.+..+ ... -.. + .... +..-.++ +....|.+-
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-------~~~-r-a~~g--g~~yl~~--~~Ww~G~ltm 74 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-------SGL-R-AGEG--GYGYLKE--PLWWAGMLTM 74 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-------hcc-c-ccCC--Ccchhhh--HHHHHHHHHH
Confidence 4456677778888999999999987653 110 000 1 1111 1111233 344567776
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
.+....-|.+..+.+++.-+-+-++.-++.++++..+++||+++. -.+|.++|++|-.+++.
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence 777777788999999999999999999999999999999999875 47899999999988874
No 71
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.36 E-value=0.34 Score=40.66 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 76 ILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 76 ~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
.|..+..+++.+.+.|.+.|.-+.+-+|-.-|++..+--.||.+.+.+++..+++.| +|+|.++.|.+...=.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 355667777777888999999999999999999999999999999999999999876 5899999999976543
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=88.68 E-value=0.029 Score=47.06 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~ 91 (211)
.++..++-++.||+...+.-. -|=.|.+=..--- ++++++....++. .+ |..+.+.+..-++-|.+=...|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT-~GALifaiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTT-LGALIFAIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeee---cCCChhHhhhhcc-HHHHHHHHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence 456667788999999877542 2345654433222 3333333333332 12 4455554443333333326789
Q ss_pred HHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhccccccccccee---hHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230 92 IFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKII---GTMVSISGALVVVLYKGPTIFLGTSP 167 (211)
Q Consensus 92 ~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~---Gi~l~~~Gv~li~~~~g~~~~~~~~~ 167 (211)
..++.+.++.+.+.|.=+.+ +.=+-+.+++++.++|--+..+ .++ .+++.+.|+.+-+..+.+.
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~n------- 141 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNN------- 141 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccc-------
Confidence 99999999999999886655 6677788889999999654332 222 2334444544332111000
Q ss_pred CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 028230 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSIL 208 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vl 208 (211)
.. ..+.+|.-.|...++.|.+.|-.|.|+
T Consensus 142 -------k~-----~~~~~n~kkgi~~L~iSt~GYv~yvvl 170 (288)
T COG4975 142 -------KE-----EENPSNLKKGIVILLISTLGYVGYVVL 170 (288)
T ss_pred -------cc-----ccChHhhhhheeeeeeeccceeeeEee
Confidence 00 123345567888888888888777654
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.31 E-value=12 Score=29.10 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhhhhHHH
Q 028230 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAI-SNLTPAFT 117 (211)
Q Consensus 39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~ 117 (211)
+|+.-.+.-|..++.++..+.+.. +++.. .....+.-++...-|++|..+-..-........+++...+ ..-+=+..
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~-~~~~~-~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIK-QGHPG-LAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHh-cCCCc-hhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 699999999999998888877664 43321 1111121223344556664444444455555555544333 33334444
Q ss_pred HHHHHH-hhhhhhcccccccccceehHHHHhhhHHHH
Q 028230 118 FTLAVL-FRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (211)
Q Consensus 118 ~lla~l-~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 153 (211)
.++..+ +++++. +..+..|+.|+++.++|++++
T Consensus 111 lliD~fG~~g~~~---~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 111 LLIDHFGWFGVPK---RPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHhhcccCCCc---CCCCHHHHHHHHHHHHHHHHh
Confidence 444443 233322 223456899999999995544
No 74
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.20 E-value=22 Score=30.99 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhh--hhhHH
Q 028230 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN--LTPAF 116 (211)
Q Consensus 39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~--~~Pv~ 116 (211)
+|..+.+..-+.+.++=...... ++.. ...++.|......++...+...+.|.+++|.|=-.-.+==+ +.|++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~---~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKW---WKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc---cccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 55667777766665554333322 2221 22345566778888877888889999999987554444333 56665
Q ss_pred HHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHH
Q 028230 117 TFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLA 196 (211)
Q Consensus 117 ~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l 196 (211)
+...++.+.|.+.+ +-+-..+.-.|+.+....+.+. + ++ ....+|...|.+++.
T Consensus 125 --lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----s---------~~----~~g~~ns~~G~~Ll~ 178 (327)
T KOG1581|consen 125 --LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----S---------SS----KSGRENSPIGILLLF 178 (327)
T ss_pred --HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----C---------cc----ccCCCCchHhHHHHH
Confidence 56788888888765 4555556667776555432211 0 00 112345678988888
Q ss_pred HHHHHHHHHHHHc
Q 028230 197 AQCFLLSIWSILL 209 (211)
Q Consensus 197 ~a~~~~a~y~vlq 209 (211)
..-+.=++-+..|
T Consensus 179 ~~L~fDgfTn~tQ 191 (327)
T KOG1581|consen 179 GYLLFDGFTNATQ 191 (327)
T ss_pred HHHHHHhhHHhHH
Confidence 7776555555555
No 75
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.96 E-value=15 Score=31.78 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHH----HHHHHHHhhccccc--cCCCCHHHHHHH-
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAA-SKGLSYYVFVAYSYPLATLA----LLPLPLIFRNTTTV--VPSFKFSILSRI- 80 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~-~~~~~p~~l~~~R~~~A~l~----l~~~~~~~~~~~~~--~~~~~~~~~~~l- 80 (211)
...+.++.+.++++-+.-++.-..-+ ..+++|...+.+.-+.+..+ ..|+.+.. ..+.. .++-.+.||...
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~-~~~sfS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIP-SGDSFSCNPRGVLEDWGDAF 252 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhee-cCCcCcCCCCcchhhHHHHH
Confidence 35678889999999999998865444 45799999999998777443 34444332 11110 123234454422
Q ss_pred --------HHHHHHH-HHHHHHHH-Hhh---hccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHh
Q 028230 81 --------ILLSFIG-VLSQIFGY-TGI---ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSI 147 (211)
Q Consensus 81 --------~~lg~~g-~~~~~l~~-~gl---~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~ 147 (211)
+.+.+.+ ...-.+|+ .|+ ++.||++=.++-..=..++-+++.....|+++.- ++.|.++-+
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi 326 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILI 326 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHH
Confidence 2344444 33322332 333 4567888888888777788888888999999764 689999999
Q ss_pred hhHHHH
Q 028230 148 SGALVV 153 (211)
Q Consensus 148 ~Gv~li 153 (211)
.|.++-
T Consensus 327 ~Gi~lY 332 (372)
T KOG3912|consen 327 MGIILY 332 (372)
T ss_pred HHHHHH
Confidence 998764
No 76
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.13 E-value=23 Score=30.92 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccccccC-----CCCHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP-----SFKFSILSRIILL 83 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~-~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l 83 (211)
..++.++..--++=|.....-+...+ ..+++..+.++-.+..++.=.....- .....+ +..++-+.-++++
T Consensus 171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~---qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL---QGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc---CCCCchHHHHHHcChhHHHHHHHH
Confidence 44555555444444444444333333 46899998888877776654433221 111101 1123445567788
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 84 SFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 84 g~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
+.+|++.|.+.|.-++.-.+-.-+.|+.+==++..+++.+.++.++++. ++.|+.+.|.|..+=+.
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence 8888777888888888877777778888888999999999999999765 68899999988876553
No 77
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=81.20 E-value=1.5 Score=37.02 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS 90 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~ 90 (211)
|+...++.+.+-+-.+.+..+.---++.+.+.--+.-+.++++++-- + +. + ++.++..+ .-..-|++=...
T Consensus 152 kgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~----~-~~-~--~~~~K~t~-~nii~G~~Wa~G 222 (288)
T COG4975 152 KGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF----F-KM-E--KRFNKYTW-LNIIPGLIWAIG 222 (288)
T ss_pred hheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh----c-cc-c--cchHHHHH-HHHhhHHHHHhh
Confidence 34555555555555555555433223555555555556666655432 1 11 1 22233333 334556655667
Q ss_pred HHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 91 ~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
+.+++.+-+....+.+=.+..+--+...+-+.++++||=|+|++ ..-++|+++.+.|+.++.
T Consensus 223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg 284 (288)
T COG4975 223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence 77777777766555554555566666667788999999988874 235668888888887764
No 78
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=81.08 E-value=37 Score=29.73 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcccccc---CCC---CHH-HHHH
Q 028230 11 LLLSATVAVECTTVGLNTLFKAAASKG----LSYYVFVAYSYPLATLALLPLPLIFRNTTTVV---PSF---KFS-ILSR 79 (211)
Q Consensus 11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~----~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~---~~~---~~~-~~~~ 79 (211)
.+......+.++-|.-..+++..+++. =+|++..+.=.-.-.+.++|..+.. |+.... +.. +.. -++.
T Consensus 164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~f-EG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLF-EGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHH-cccccchhhhHHHhcCccHHHHH
Confidence 456666667777777777777766531 2466666555445556666666655 543210 000 111 1222
Q ss_pred HHHHHHHH---HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230 80 IILLSFIG---VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (211)
Q Consensus 80 l~~lg~~g---~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 153 (211)
+..+++.| +..-...|.=+..||.-.-++.--.-=+.+.+++..+.+|+++.. .+.|..++..|+.+-
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 22333333 233334455556666666666655667788889999999999754 589999999999765
No 79
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=78.39 E-value=15 Score=30.84 Aligned_cols=120 Identities=11% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 028230 28 TLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV---VPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSP 103 (211)
Q Consensus 28 i~~K~~~~-~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa 103 (211)
...|.-.+ .+.--++-.+|-.+++..+++.+.+.. |.... ....+...+..+++-|+..++-.++--|.++-||.
T Consensus 172 L~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~-edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSS 250 (309)
T COG5070 172 LIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLF-EDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSS 250 (309)
T ss_pred HHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHh-ccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhh
Confidence 34454332 246678899999999999999988876 43221 01122233445566666656667778888999999
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 104 TLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 104 ~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
+.=+..-+++-.-..+.+.+++.|+.+.. ++..+.+++...++-.
T Consensus 251 TtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYa 295 (309)
T COG5070 251 TTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA 295 (309)
T ss_pred hHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence 99999998888888888999999998754 5788888876554443
No 80
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=68.15 E-value=3.6 Score=34.42 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=84.3
Q ss_pred HHHHHHHHhC-CCC-hHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 028230 27 NTLFKAAASK-GLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPT 104 (211)
Q Consensus 27 ~i~~K~~~~~-~~~-p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~ 104 (211)
.+.-|+.++. |++ -+.+.+.+-+...+-+..+-+. |- .+.+.++.+..+..+++-+..-+.--.+++|.+..
T Consensus 22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l---~~---~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vp 95 (309)
T COG5070 22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFL---RL---VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVP 95 (309)
T ss_pred HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHH---hH---hheehhhhhhhcCHHHHHHHHHHhcccceeeeeee
Confidence 3344555432 222 2456666666554444333211 11 11122333333444554444444455789999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCCC
Q 028230 105 LSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPS 184 (211)
Q Consensus 105 ~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (211)
.=+++-+++-+.++....++++.|++-- +....++-+.....-.+ |+. ++. ...
T Consensus 96 iYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w--~D~--------------q~~----~~~ 149 (309)
T COG5070 96 IYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW--GDQ--------------QAS----AFK 149 (309)
T ss_pred HHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc--chh--------------hHH----HHH
Confidence 9999999999999999999998887642 22333332222222211 110 000 011
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 185 VSNWVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 185 ~~~~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
....+.|.+++...|++-+.|....||
T Consensus 150 ~~~lN~GY~Wm~~NclssaafVL~mrk 176 (309)
T COG5070 150 AQILNPGYLWMFTNCLSSAAFVLIMRK 176 (309)
T ss_pred hcccCCceEEEehhhHhHHHHHHHHHH
Confidence 123457999999999999999887664
No 81
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=61.18 E-value=42 Score=28.42 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HH
Q 028230 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLAL-LPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VL 89 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~ 89 (211)
++++.+++.+++|++++-.|.. +. -|++.+ ++.....++ .-+.... -+. . ++. -.+..+|-.- ..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~f---Qw~~~~~i~~~g~~v~~-~~~-~-p~f-----~p~amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFF---QWVMCSGIFLVGLVVNL-ILG-F-PPF-----YPWAMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHH---HHHHHHHHHHHHHHHHH-hcC-C-Ccc-----eeHHHhhhhhhhc
Confidence 3678889999999999999964 33 466543 333322222 1111111 111 1 221 1223333333 55
Q ss_pred HHHHHHHhhhccchhHHHHhhhhhhHHH-HHHHHH-hhhhhhcccccccccceehHHHHhhhHHHHhhhcCCc
Q 028230 90 SQIFGYTGIACSSPTLSSAISNLTPAFT-FTLAVL-FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPT 160 (211)
Q Consensus 90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~-~lla~l-~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~ 160 (211)
.+.+-.-.++...-+.+-++=++.=+.+ ...+++ +++++.+... ......+|++++++|..+..+-|.+.
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCC
Confidence 6666677777777777777766544443 333443 3443332211 12346789999999998777655544
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=56.54 E-value=1.2e+02 Score=25.34 Aligned_cols=123 Identities=13% Similarity=0.039 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g- 87 (211)
...++++.+.++++-|...+.....+++.-.|+..--.+..+-+++...+....++++....+--.+.+-.....-++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 4567888889999999999999888876445555544444444443333332220221110110112121122222223
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcc
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLAL 131 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~ 131 (211)
+..-.+.-.-++|.+...=..-.+..=+++.+++..+++.+++.
T Consensus 192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 44455555678888888777778888889999999999998875
No 83
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=56.38 E-value=20 Score=27.74 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=34.2
Q ss_pred hhhccchhHHHHhhhhhhHHHHHHHHHh-----hhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 97 GIACSSPTLSSAISNLTPAFTFTLAVLF-----RMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 97 gl~~tsa~~as~i~~~~Pv~~~lla~l~-----~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
|+.--+.-.++++.++.|+++++++.++ +.|.+ .++|++++.++.+++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~---------~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELI---------VIFGAFLGLALGFLLA 121 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHHHHHHHHH
Confidence 5555667788999999999998887644 44543 3566666666666665
No 84
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.11 E-value=45 Score=28.92 Aligned_cols=144 Identities=19% Similarity=0.136 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcc-ccc-cCCC-CHHHHHHHHHHH
Q 028230 9 EALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNT-TTV-VPSF-KFSILSRIILLS 84 (211)
Q Consensus 9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l~~~R~~~A~l~l~~~~~~~~~~-~~~-~~~~-~~~~~~~l~~lg 84 (211)
.+.+.++-+.+.+.-+.+.+.+|..+.. +=.-..+.+|-...|.++.+|+....++- +.+ .++. ..+-|..+.+-|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 3567888888999999999999954432 11234677888889999999998765211 111 0222 344555566677
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230 85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (211)
Q Consensus 85 ~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g 158 (211)
++|+..++.-.+=++.|||-.=-+=...=..--.++|..+++|..+..+ |-|.++.+.|...-..-++
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHHH
Confidence 7774444444555666766431111111122334678889999876543 5666777777766655444
No 85
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=52.81 E-value=73 Score=27.65 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhcc-cccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhh
Q 028230 37 GLSYYVFVAYSYPLATLALLPLPLIFRNT-TTVV--PSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLT 113 (211)
Q Consensus 37 ~~~p~~l~~~R~~~A~l~l~~~~~~~~~~-~~~~--~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~ 113 (211)
+-+..+++++.+.++...++......++- +.+. .+-+.|.....++.+..|.+.+.+...=++.-.|..|+.+...=
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 35667888888888888776665543110 0010 01134555666666666655555555556777888899999888
Q ss_pred hHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhc
Q 028230 114 PAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYK 157 (211)
Q Consensus 114 Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~ 157 (211)
-..|.+++.+++.+++|.. ...|..+.+.|+.+=..++
T Consensus 297 KavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcccC
Confidence 9999999999999999864 3567788889987765444
No 86
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=49.59 E-value=1e+02 Score=22.68 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 028230 14 SATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIF 93 (211)
Q Consensus 14 ~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l 93 (211)
..++.+.++||....+.|.+.. +.+..-=.. |..-- . .+ +-+.. -..++.+.. +.+ .-....+
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k~~~-----~---lq-e~~tl--~l~w~Y~iP-Fll---NqcgSal 68 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RKIMI-----A---LQ-EMKTL--FLNWEYLIP-FLL---NQCGSAL 68 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCch-HHHHH-----H---HH-HHHHH--HHhHHHHHH-HHH---HHhhHHH
Confidence 4577899999999999998643 332211100 11000 0 01 11100 001111111 111 1333567
Q ss_pred HHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 94 GYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 94 ~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
||.-++.++-+.|.=+.+ +.=.|+.+.+..+ +|+.. ++..+.|..+.+.|+.+.+
T Consensus 69 y~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~-----g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQ-----GGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccc-----cceeehhhhHHhhhhhhee
Confidence 788888888888775544 5666777776644 56654 3446889999999987653
No 87
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=45.85 E-value=44 Score=28.95 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhh
Q 028230 70 PSFKFSILSRIILLSFIGVLSQIFGYTGIACS-SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSIS 148 (211)
Q Consensus 70 ~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~t-sa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~ 148 (211)
++++.|++.....+= +..+.+-++++++- +-..=-++-+-.++-++.++++++++|-+.+ |+..+++.-+
T Consensus 60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 566778765444322 33344444566652 2222223334567788899999999887665 6888999999
Q ss_pred hHHHHhhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHc
Q 028230 149 GALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILL 209 (211)
Q Consensus 149 Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq 209 (211)
|+++-.+.+.++... .+++... .+ +......|.+|..++..|.+.-|.--+-|
T Consensus 131 GiiIcTl~s~~d~~~--~~~~l~~---~~---~~~~~~~w~iGi~lL~~al~~sa~mgiyq 183 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRS--KLSGLDS---GS---AQSDFFWWLIGIALLVFALLLSAYMGIYQ 183 (330)
T ss_pred hheeEEeecCcchhh--hhccccc---Cc---ccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998776554433221 0000000 00 01123457899999988888777666655
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=40.44 E-value=2.7e+02 Score=24.78 Aligned_cols=179 Identities=14% Similarity=0.083 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhc-cccc--cCCCCHHHHHHHHHHHHH
Q 028230 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRN-TTTV--VPSFKFSILSRIILLSFI 86 (211)
Q Consensus 10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~-~~~~--~~~~~~~~~~~l~~lg~~ 86 (211)
..+.+...+..++-|+.++-.|..- +.+=...=....+++ -++.|+....-. .+-. ....+...+....+.|++
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk--~WsWEs~Wlv~gi~s-wli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l 82 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK--GWSWESYWLVQGIFS-WLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL 82 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC--CccHHHHHHHHHHHH-HHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence 4567777888999999999999753 244444434444444 344455432201 1000 011223444445555554
Q ss_pred HHHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhh--hhcccccccccceehHHHHhhhHHHHhhhcCCcccC
Q 028230 87 GVLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRME--KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL 163 (211)
Q Consensus 87 g~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E--~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~ 163 (211)
=.+....|=.+++|...+.. ++...+.-++-.++-.++.++ .+ ..+..++.-++|++++++|+.+.... |.....
T Consensus 83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~Ke~ 160 (344)
T PF06379_consen 83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLIGIAICGKA-GSMKEK 160 (344)
T ss_pred HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHHHHHHHhHH-HHhhhh
Confidence 45666777788888877754 333444444444443333321 11 11112456788999999999988632 211100
Q ss_pred CCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 028230 164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSI 207 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~v 207 (211)
. .. ....+.|.-+|.++.+.|.+--|++.+
T Consensus 161 ~----------~~----~~~~efn~~kGl~iAv~sGv~Sa~fn~ 190 (344)
T PF06379_consen 161 E----------LG----EEAKEFNFKKGLIIAVLSGVMSACFNF 190 (344)
T ss_pred h----------hc----cchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 0 00 011234556898888888777666654
No 89
>PRK02237 hypothetical protein; Provisional
Probab=39.75 E-value=1.5e+02 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 121 AVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 121 a~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
.+..-++|+++ ..++|..+|++|+.++.
T Consensus 77 ~w~vdg~~Pd~------~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 77 LWVVDGVRPDR------WDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHhcCcCCCh------hHHHhHHHHHHhHHHhe
Confidence 44555566554 46999999999998875
No 90
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=38.48 E-value=58 Score=26.22 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 105 LSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 105 ~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
......+..|+++++....+.+|+.+. .|++.+++...|++.-.
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ 49 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVAS 49 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhH
Confidence 344566788999999999888888863 47899999999987543
No 91
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=38.29 E-value=45 Score=19.47 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 028230 191 GGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 191 G~ll~l~a~~~~a~y~vlq~ 210 (211)
=.+.-++.+.+|+.|.|.+.
T Consensus 7 iVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 7 IVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 34566778999999999763
No 92
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=37.88 E-value=47 Score=19.39 Aligned_cols=19 Identities=5% Similarity=-0.237 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 028230 191 GGFLLAAQCFLLSIWSILL 209 (211)
Q Consensus 191 G~ll~l~a~~~~a~y~vlq 209 (211)
=.++-++.+.+|++|.|.+
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3456678899999999875
No 93
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.64 E-value=68 Score=27.83 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhccc----cccCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhh
Q 028230 39 SYYVFVAYSYPLATLALLPLPLIFRNTT----TVVPS--FKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNL 112 (211)
Q Consensus 39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~----~~~~~--~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~ 112 (211)
-|.....++.+....+-+.+.... .+- .. |+ ++.+..+.+.-+.+.-...-.+-+..++|.+.+.==+=-++
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls-~k~~~~ftf-p~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLS-VKYPGLFTF-PSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-hhccceecc-CcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 466777788777665555443322 111 11 22 23332333322222211111222344555544422222346
Q ss_pred hhHHHHHHHHHhhhhhhcc
Q 028230 113 TPAFTFTLAVLFRMEKLAL 131 (211)
Q Consensus 113 ~Pv~~~lla~l~~~E~~~~ 131 (211)
+-+|+.+++++++|+|-+.
T Consensus 138 ttvFtVlLtyvllkqkTs~ 156 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSF 156 (347)
T ss_pred hhhHHHHhHHhhccccccc
Confidence 7789999999999998654
No 94
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=36.07 E-value=35 Score=29.49 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=45.2
Q ss_pred HHHHHHHH-HHHHH-HHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230 80 IILLSFIG-VLSQI-FGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 80 l~~lg~~g-~~~~~-l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 154 (211)
++++.... ...|. +.+.|++.-+++...-+.+ ..-.++.+-+.++++|--+...+.-..-..|..+.+.|+.++.
T Consensus 214 ~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 214 LLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 34444444 45554 6677999988876543333 4445566667788887543221111124558888888998886
No 95
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=35.13 E-value=30 Score=25.33 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=22.4
Q ss_pred HHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 119 TLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 119 lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
+-.+.+-++++++ ..++|..+|++|+.++.+
T Consensus 73 ~W~w~vdg~~Pd~------~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 73 LWGWLVDGVRPDR------WDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHhhhcCcCCCh------HHHHhHHHHHHhHHheEe
Confidence 3345555666654 469999999999988863
No 96
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=31.44 E-value=45 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=29.2
Q ss_pred HhhhccchhHHHHhhhhhhHHH-HHHHHHhhhhhhcccccccccceehHHHHhhhH
Q 028230 96 TGIACSSPTLSSAISNLTPAFT-FTLAVLFRMEKLALRTLSTQAKIIGTMVSISGA 150 (211)
Q Consensus 96 ~gl~~tsa~~as~i~~~~Pv~~-~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv 150 (211)
.|.+.-|+..--+++=..-+.+ +.++.++++|+++++ ...|.++.+.++
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av 103 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAV 103 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhh
Confidence 3445556665555655443333 456788999999876 355655544444
No 97
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=28.50 E-value=3.1e+02 Score=22.00 Aligned_cols=44 Identities=27% Similarity=0.327 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHHhhhhhhcc-----ccc--ccccceehHHHHhhhHHHHh
Q 028230 111 NLTPAFTFTLAVLFRMEKLAL-----RTL--STQAKIIGTMVSISGALVVV 154 (211)
Q Consensus 111 ~~~Pv~~~lla~l~~~E~~~~-----~~~--~~~~~~~Gi~l~~~Gv~li~ 154 (211)
...|+...++++...+||.+. ++| ....++.+.++.+.|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 467888888888888777631 111 22356789999999998874
No 98
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=27.26 E-value=1.3e+02 Score=21.97 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=15.4
Q ss_pred ccceehHHHHhhhHHHHhh
Q 028230 137 QAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 137 ~~~~~Gi~l~~~Gv~li~~ 155 (211)
+..+.|.++|++|+.++.+
T Consensus 86 r~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 86 RYDWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHhhhHHHHHhceeeeEe
Confidence 3468999999999887753
No 99
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=26.38 E-value=6.8e+02 Score=25.25 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=46.6
Q ss_pred hhHhhhHhHHHHHHHH-HHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhh-----ccccccCC-
Q 028230 2 ERRKFFREALLLSATV-AVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIFR-----NTTTVVPS- 71 (211)
Q Consensus 2 ~~~~~~~~~~~~~~l~-~~~~~wg~~~i~~K~~~~~~---~~p~~l~~~R~~~A~l~l~~~~~~~~-----~~~~~~~~- 71 (211)
|||....+.+-++... ...+.+....++.-. .... ++|.++..+=.+.-.+.-+.+..... .++.+.|.
T Consensus 693 eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~~~-~~~~~~p~~~~qll~inll~d~~pa~~L~~~~~~~~~m~~~~~~p~~ 771 (917)
T COG0474 693 EGRRVYVNIKKFILYLLSKNVGEVLTLLIYSL-FNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEE 771 (917)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHhhhhhheeecCCCcccccccCCCCccc
Confidence 6777777776554444 344443444433332 2222 66777777777766654434332210 11111011
Q ss_pred --CCHHHHHH-HHHHHHHH-HHHHHHHHHhhh
Q 028230 72 --FKFSILSR-IILLSFIG-VLSQIFGYTGIA 99 (211)
Q Consensus 72 --~~~~~~~~-l~~lg~~g-~~~~~l~~~gl~ 99 (211)
.+++.+.. ++..|+.. ......|.....
T Consensus 772 ~i~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 803 (917)
T COG0474 772 GLFNRKIFWRFILIIGLLSAILFILTFLLYLL 803 (917)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 55666666 444333333333
No 100
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=25.58 E-value=5.5e+02 Score=23.84 Aligned_cols=31 Identities=3% Similarity=-0.060 Sum_probs=21.2
Q ss_pred HHHHhhhccchh------HHHHhhhhhhHHHHHHHHH
Q 028230 93 FGYTGIACSSPT------LSSAISNLTPAFTFTLAVL 123 (211)
Q Consensus 93 l~~~gl~~tsa~------~as~i~~~~Pv~~~lla~l 123 (211)
+...+-++++-. .++.+++.+|+++++++-+
T Consensus 291 l~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~ 327 (493)
T PRK15462 291 ISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVF 327 (493)
T ss_pred HHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHH
Confidence 333444555544 2788899999999988754
No 101
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=24.70 E-value=99 Score=18.49 Aligned_cols=18 Identities=6% Similarity=-0.140 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 028230 192 GFLLAAQCFLLSIWSILL 209 (211)
Q Consensus 192 ~ll~l~a~~~~a~y~vlq 209 (211)
.++-++.+.+|++|.|..
T Consensus 8 Vl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 8 VLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 456678899999999864
No 102
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.40 E-value=1.2e+02 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.254 Sum_probs=20.7
Q ss_pred hhhccchhHHHHhhhhhhHHHHHHHHHhh
Q 028230 97 GIACSSPTLSSAISNLTPAFTFTLAVLFR 125 (211)
Q Consensus 97 gl~~tsa~~as~i~~~~Pv~~~lla~l~~ 125 (211)
++...+.-.++.+.|..|++.++.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556688889999999888765543
No 103
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.93 E-value=1.2e+02 Score=22.59 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=19.7
Q ss_pred hccchhHHHHhhhhhhHHHHHHHHHhh
Q 028230 99 ACSSPTLSSAISNLTPAFTFTLAVLFR 125 (211)
Q Consensus 99 ~~tsa~~as~i~~~~Pv~~~lla~l~~ 125 (211)
...+...++++.+..|++.++++.++.
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455688899999999988876543
No 104
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.27 E-value=2.9e+02 Score=22.15 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028230 12 LLSATVAVECTTVGLNTLF 30 (211)
Q Consensus 12 ~~~~l~~~~~~wg~~~i~~ 30 (211)
+...+++..++.|..+...
T Consensus 112 gi~tli~~~i~~G~~~~~~ 130 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFI 130 (206)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443
No 105
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=21.32 E-value=1.6e+02 Score=17.44 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHH
Q 028230 70 PSFKFSILSRIILLSFIG-VLSQIFGYT 96 (211)
Q Consensus 70 ~~~~~~~~~~l~~lg~~g-~~~~~l~~~ 96 (211)
|.++||++..++..|..+ .....++=+
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~ 31 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPY 31 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 345678888888888777 544444433
No 106
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.83 E-value=2.8e+02 Score=20.19 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHh
Q 028230 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLF 124 (211)
Q Consensus 88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~ 124 (211)
.+|..+...|+.-.+|++++=..-..-++.-+.++++
T Consensus 19 ~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlf 55 (104)
T PF11460_consen 19 LLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLF 55 (104)
T ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHh
Confidence 7888888999999999988765555445666666665
Done!