Query 028230
Match_columns 211
No_of_seqs 260 out of 1668
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 2.9E-07 9.8E-12 69.6 6.2 69 82-156 34-104 (137)
2 3b5d_A Multidrug transporter E 98.4 6.2E-07 2.1E-11 65.2 6.9 68 82-155 34-103 (110)
3 1q90_R Cytochrome B6-F complex 14.1 2E+02 0.0068 17.0 3.3 18 70-87 7-24 (49)
4 3hd7_A Vesicle-associated memb 10.6 2.2E+02 0.0075 18.9 3.1 18 3-20 61-78 (91)
5 2hac_A T-cell surface glycopro 7.0 2.8E+02 0.0097 15.0 1.9 15 117-131 16-30 (33)
6 3g15_A CK, chetk-alpha, cholin 6.1 2.3E+02 0.0078 23.7 1.8 18 193-210 355-372 (401)
7 2jwa_A Receptor tyrosine-prote 5.0 5.7E+02 0.019 14.7 3.0 18 189-206 18-35 (44)
8 2l9j_A M2-1, matrix protein 2- 4.6 4E+02 0.014 18.6 1.9 14 197-210 36-49 (121)
9 3ro3_B Minsc, peptide of prote 4.6 3.5E+02 0.012 13.0 1.2 9 3-11 10-18 (22)
10 2ks1_B Epidermal growth factor 3.8 7.1E+02 0.024 14.1 3.1 22 48-71 22-43 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.45 E-value=2.9e-07 Score=69.62 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=52.9
Q ss_pred HHHHHH-HHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY 156 (211)
Q Consensus 82 ~lg~~g-~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 156 (211)
++++++ .+++.+++.++++.+++.+..+ .++.|++++++++++++|+++++ +++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 577778 8999999999999999999888 89999999999999999999875 599999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.41 E-value=6.2e-07 Score=65.19 Aligned_cols=68 Identities=25% Similarity=0.236 Sum_probs=61.5
Q ss_pred HHHHHH-HHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (211)
Q Consensus 82 ~lg~~g-~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 155 (211)
+.++++ ..++.++..++++.+.+.+..+ ..+.|+++.++++++++|+++++ |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 567777 8889999999999999999877 79999999999999999999875 59999999999998864
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=14.07 E-value=2e+02 Score=17.02 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028230 70 PSFKFSILSRIILLSFIG 87 (211)
Q Consensus 70 ~~~~~~~~~~l~~lg~~g 87 (211)
+.++||++...+..|..+
T Consensus 7 pdm~RRqfln~l~~G~~a 24 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAG 24 (49)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 456788888888877776
No 4
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=10.63 E-value=2.2e+02 Score=18.85 Aligned_cols=18 Identities=6% Similarity=0.213 Sum_probs=11.9
Q ss_pred hHhhhHhHHHHHHHHHHH
Q 028230 3 RRKFFREALLLSATVAVE 20 (211)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~ 20 (211)
+++|+++.|-++.+.+..
T Consensus 61 rkmwwkn~K~~iii~~iv 78 (91)
T 3hd7_A 61 RKYWWKNLKMMIILGVIC 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888888665554433
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.97 E-value=2.8e+02 Score=14.98 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=10.0
Q ss_pred HHHHHHHhhhhhhcc
Q 028230 117 TFTLAVLFRMEKLAL 131 (211)
Q Consensus 117 ~~lla~l~~~E~~~~ 131 (211)
..++..++.+||+..
T Consensus 16 gii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 16 GVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 345566788888754
No 6
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=6.05 E-value=2.3e+02 Score=23.71 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 028230 193 FLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 193 ll~l~a~~~~a~y~vlq~ 210 (211)
.+.+++-+.|++|.++|+
T Consensus 355 ~~~~~~~l~W~~Waiiq~ 372 (401)
T 3g15_A 355 RFALASHFLWGLWSIVQA 372 (401)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHh
Confidence 466789999999999996
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=4.97 E-value=5.7e+02 Score=14.65 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028230 189 VTGGFLLAAQCFLLSIWS 206 (211)
Q Consensus 189 ~~G~ll~l~a~~~~a~y~ 206 (211)
..|.++++...+.+.+|.
T Consensus 18 vVGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 468778888888888875
No 8
>2l9j_A M2-1, matrix protein 2-1; processivity, transcription CO-factor, viral protein, RNA BI protein; NMR {Human respiratory syncytial virus}
Probab=4.59 E-value=4e+02 Score=18.59 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHcC
Q 028230 197 AQCFLLSIWSILLS 210 (211)
Q Consensus 197 ~a~~~~a~y~vlq~ 210 (211)
=++.|+|.|.++|.
T Consensus 36 K~~AC~sl~~il~~ 49 (121)
T 2l9j_A 36 KQSACVAMSKLLTE 49 (121)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 36789999999874
No 9
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=4.58 E-value=3.5e+02 Score=13.05 Aligned_cols=9 Identities=0% Similarity=0.268 Sum_probs=6.1
Q ss_pred hHhhhHhHH
Q 028230 3 RRKFFREAL 11 (211)
Q Consensus 3 ~~~~~~~~~ 11 (211)
.+.||++++
T Consensus 10 V~rWmeDLr 18 (22)
T 3ro3_B 10 VQRWMEDLK 18 (26)
T ss_pred HHHHHHHHH
Confidence 466777765
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=3.83 E-value=7.1e+02 Score=14.14 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccccccCC
Q 028230 48 YPLATLALLPLPLIFRNTTTVVPS 71 (211)
Q Consensus 48 ~~~A~l~l~~~~~~~~~~~~~~~~ 71 (211)
..++.+.+..+.+.+ +|++. .+
T Consensus 22 ~~~~ii~~~~~~~~R-Rr~~~-~k 43 (44)
T 2ks1_B 22 LLLLVVALGIGLFMR-RRHIV-RK 43 (44)
T ss_dssp HHHHHHHHHHHHHHH-TTTCC-SC
T ss_pred HHHHHHHHHHHHHhh-hhHhh-cc
Done!