Query 028230
Match_columns 211
No_of_seqs 260 out of 1668
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 13:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 8.5 1.2E+02 0.0087 14.1 2.8 18 189-206 2-19 (27)
2 d1q90r_ f.23.12.1 (R:) ISP sub 7.4 1.8E+02 0.013 15.1 3.3 18 70-87 5-22 (39)
3 d1nw1a_ d.144.1.8 (A:) Choline 5.0 95 0.0069 23.9 0.8 18 193-210 347-364 (395)
4 d1pv7a_ f.38.1.2 (A:) Lactose 4.2 5.8E+02 0.042 17.5 7.2 35 99-133 38-74 (417)
5 d1q90a3 f.23.23.1 (A:248-292) 3.3 3.5E+02 0.026 14.2 2.1 23 188-210 4-26 (45)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 3.1 3.7E+02 0.027 13.4 2.3 16 109-124 15-30 (37)
7 d1vf5c3 f.23.23.1 (C:250-286) 2.3 4.9E+02 0.036 13.0 2.9 24 188-211 5-28 (37)
8 d1ppjd2 f.23.11.1 (D:196-241) 2.0 5.4E+02 0.039 13.4 1.9 16 47-62 12-27 (46)
9 d1gl4a1 d.22.1.2 (A:399-631) D 2.0 2.4E+02 0.017 20.5 0.2 36 96-132 43-78 (233)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.0 6.7E+02 0.049 13.6 2.9 12 71-82 17-28 (56)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.50 E-value=1.2e+02 Score=14.08 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028230 189 VTGGFLLAAQCFLLSIWS 206 (211)
Q Consensus 189 ~~G~ll~l~a~~~~a~y~ 206 (211)
.+|.+..-++.+.|+.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 467788888888888884
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.40 E-value=1.8e+02 Score=15.08 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028230 70 PSFKFSILSRIILLSFIG 87 (211)
Q Consensus 70 ~~~~~~~~~~l~~lg~~g 87 (211)
|...||++..++.+|-.+
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 445678888888777765
No 3
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.99 E-value=95 Score=23.87 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 028230 193 FLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 193 ll~l~a~~~~a~y~vlq~ 210 (211)
.+.+++-+.|++|.++|+
T Consensus 347 ~~~~~s~l~W~lW~~iq~ 364 (395)
T d1nw1a_ 347 PFVPVSHFFWGVWGLLQV 364 (395)
T ss_dssp GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhh
Confidence 356788899999999996
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.16 E-value=5.8e+02 Score=17.50 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=24.3
Q ss_pred hccchhHHHHhhhhhhHHHHHHHHHh--hhhhhcccc
Q 028230 99 ACSSPTLSSAISNLTPAFTFTLAVLF--RMEKLALRT 133 (211)
Q Consensus 99 ~~tsa~~as~i~~~~Pv~~~lla~l~--~~E~~~~~~ 133 (211)
...|++..+++.+...+...+.+.+. +-||..+|+
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 34688888888887777776666554 457776653
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.30 E-value=3.5e+02 Score=14.20 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcC
Q 028230 188 WVTGGFLLAAQCFLLSIWSILLS 210 (211)
Q Consensus 188 ~~~G~ll~l~a~~~~a~y~vlq~ 210 (211)
.+.|.+..+++.+.--++.|+-|
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKK 26 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKK 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888777777777654
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.11 E-value=3.7e+02 Score=13.41 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHh
Q 028230 109 ISNLTPAFTFTLAVLF 124 (211)
Q Consensus 109 i~~~~Pv~~~lla~l~ 124 (211)
++..+|++-.+++..+
T Consensus 15 vlPiIPv~f~lLafVW 30 (37)
T d2axtk1 15 VLPVIPVLFLALAFVW 30 (37)
T ss_dssp HGGGHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 3557788877777554
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.29 E-value=4.9e+02 Score=13.00 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCC
Q 028230 188 WVTGGFLLAAQCFLLSIWSILLSY 211 (211)
Q Consensus 188 ~~~G~ll~l~a~~~~a~y~vlq~~ 211 (211)
.+.|.+..+.+.+.--+..|+-||
T Consensus 5 Rv~gl~~F~~~v~laQi~lVlKKK 28 (37)
T d1vf5c3 5 RVKWMIAFICLVMLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887777777777776553
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.04 E-value=5.4e+02 Score=13.35 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 028230 47 SYPLATLALLPLPLIF 62 (211)
Q Consensus 47 R~~~A~l~l~~~~~~~ 62 (211)
+.++...++..++++.
T Consensus 12 Kv~~~l~~l~~l~yy~ 27 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAM 27 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.98 E-value=2.4e+02 Score=20.50 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=28.9
Q ss_pred HhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhccc
Q 028230 96 TGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (211)
Q Consensus 96 ~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~ 132 (211)
.++...++..+..+..+.|+.. .++|+|=+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 4677788999999999999987 45899988876543
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.96 E-value=6.7e+02 Score=13.65 Aligned_cols=12 Identities=0% Similarity=-0.319 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHH
Q 028230 71 SFKFSILSRIIL 82 (211)
Q Consensus 71 ~~~~~~~~~l~~ 82 (211)
+++++++.....
T Consensus 17 KP~~~Ef~~ia~ 28 (56)
T d1rh5b_ 17 KPTKDEYLAVAK 28 (56)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 346777766543
Done!