Query 028231
Match_columns 211
No_of_seqs 111 out of 393
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 1.5E-57 3.1E-62 387.0 16.2 201 4-210 101-301 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 2.2E-52 4.7E-57 337.3 14.3 170 12-182 1-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 2.2E-34 4.7E-39 261.2 12.7 199 4-205 276-488 (713)
4 PF03735 ENT: ENT domain; Int 45.3 42 0.00091 23.3 3.9 33 5-41 25-57 (73)
5 PHA02819 hypothetical protein; 40.7 52 0.0011 22.7 3.7 32 153-190 2-33 (71)
6 PF08262 Lem_TRP: Leucophaea m 38.0 13 0.00029 15.9 0.3 6 59-64 3-8 (10)
7 PF11588 DUF3243: Protein of u 37.1 13 0.00028 26.5 0.3 27 19-46 40-66 (81)
8 PHA02650 hypothetical protein; 35.7 65 0.0014 22.8 3.6 32 153-190 2-33 (81)
9 PHA02844 putative transmembran 35.5 65 0.0014 22.5 3.6 33 153-191 2-34 (75)
10 PHA02975 hypothetical protein; 35.5 69 0.0015 22.0 3.6 32 153-190 2-33 (69)
11 KOG4404 Tandem pore domain K+ 30.0 69 0.0015 28.7 3.7 85 9-99 37-143 (350)
12 PHA02692 hypothetical protein; 28.0 1.1E+02 0.0024 21.1 3.6 33 153-191 2-34 (70)
13 TIGR01568 A_thal_3678 uncharac 23.8 16 0.00035 24.9 -1.0 12 63-74 6-17 (66)
14 KOG2412 Nuclear-export-signal 23.5 5.4E+02 0.012 24.9 8.5 46 76-125 377-423 (591)
15 PF04844 Ovate: Transcriptiona 22.3 16 0.00034 24.4 -1.3 10 64-73 1-10 (59)
16 PF11272 DUF3072: Protein of u 22.2 1.2E+02 0.0027 20.0 2.9 25 5-29 15-39 (57)
17 PF12575 DUF3753: Protein of u 20.4 1.8E+02 0.0039 20.2 3.6 31 153-189 2-32 (72)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-57 Score=386.97 Aligned_cols=201 Identities=57% Similarity=0.889 Sum_probs=185.7
Q ss_pred CCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCchhhhHHhhHH
Q 028231 4 FHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL 83 (211)
Q Consensus 4 ~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~L~ 83 (211)
+++.+-+...++.++++.++|||.+|++|+++|.+||+.++|+++++++++++|+++||||+||.|||||||+|||.||+
T Consensus 101 ~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLl 180 (302)
T KOG2998|consen 101 RHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLL 180 (302)
T ss_pred cccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhChHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccchhhHHHHHHHHHHHH
Q 028231 84 YLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 163 (211)
Q Consensus 84 yF~~~~~~~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~~~f~ely~~~f~~f 163 (211)
||+++||+.++.++..| +++.++|||||||||||.|++++|+.++++.+++.- ..-++++.+|+.+||++|..|
T Consensus 181 yFa~~~~~~aq~lL~~s--~~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~----~~~~~~~~~F~~lYc~af~~~ 254 (302)
T KOG2998|consen 181 YFARTYPTSAQRLLLKS--RHPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNI----VKVFETEPAFDLLYCYAFLEF 254 (302)
T ss_pred HHHHhhhHHHHHHHHhc--CCCccCCceEEEeecHHHHHHHHHHhhhcccccccc----ccccccHHHHHHHHHHHHHHH
Confidence 99999999999999996 466799999999999999999999999886554321 122367789999999999999
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhccccccCcCCCccccccc
Q 028231 164 DHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLS 210 (211)
Q Consensus 164 ~~~W~~~~~t~~dF~~V~~~~r~ql~~~l~~~~~~~~~~l~~~~~~~ 210 (211)
++.|+++++||||||.|++.+|.|+++.|.+.++....++|+|..|.
T Consensus 255 d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~ 301 (302)
T KOG2998|consen 255 DKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPAFNLLL 301 (302)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999874
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=2.2e-52 Score=337.34 Aligned_cols=170 Identities=44% Similarity=0.785 Sum_probs=152.7
Q ss_pred HHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCchhhhHHhhHHHHHhhChH
Q 028231 12 ECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPK 91 (211)
Q Consensus 12 ~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~L~yF~~~~~~ 91 (211)
++|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|+.|||||+||+|||||+|+|||+||+||+++||+
T Consensus 1 ~~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~ 80 (170)
T PF04727_consen 1 HTLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPD 80 (170)
T ss_pred ChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChH
Confidence 36899999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccchhhHHHHHHHHHHHHHHHHhhCC
Q 028231 92 SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR 171 (211)
Q Consensus 92 ~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~~~f~ely~~~f~~f~~~W~~~~ 171 (211)
.+++|+.++.++.+..+||||+||||||.+|+++++.+..+...+.....+. +++.+.+|++|||++|..|+++|++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 81 EFRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYKRINFLS-FFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhhcccccc-cCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999988766667999999999999999999999766544332211111 456788999999999999999999999
Q ss_pred CChhhHHHHHH
Q 028231 172 ASYMDFNTVMK 182 (211)
Q Consensus 172 ~t~~dF~~V~~ 182 (211)
+|+|||++|++
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999974
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-34 Score=261.21 Aligned_cols=199 Identities=27% Similarity=0.516 Sum_probs=182.3
Q ss_pred CCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCccc-----------chhhhhhHhHhcCCC-CCCCCCC
Q 028231 4 FHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPSTDF 71 (211)
Q Consensus 4 ~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~-----------~~~~~~~W~~lGFQ~-~dP~tDf 71 (211)
-+|+..|...++.+..++.++.|+.++..+++++.+-..++.++.. .....+..+.+||.. .||+.||
T Consensus 276 ~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~df 355 (713)
T KOG2999|consen 276 IQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQDF 355 (713)
T ss_pred HHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHhc
Confidence 3688999999999999999999999999999999999999876422 234567999999998 9999999
Q ss_pred C--chhhhHHhhHHHHHhhChHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccch
Q 028231 72 R--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENE 149 (211)
Q Consensus 72 R--g~G~LgL~~L~yF~~~~~~~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~ 149 (211)
- ..|+|+|+||+||+++||+.+.+++.++++|.+++.|||+.++|.+|.++|++|+.+.+... ....|.++||.++
T Consensus 356 ~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~p~E--~~~df~pmfFthd 433 (713)
T KOG2999|consen 356 GETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEPPDE--LDRDFIPMFFTHD 433 (713)
T ss_pred ccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCCchh--hcCccceeeecCC
Confidence 8 89999999999999999999999999999999999999999999999999999999875332 3356999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhccccccCcCCCcc
Q 028231 150 SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 205 (211)
Q Consensus 150 ~~f~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~~l~~~~~~~~~~l~~ 205 (211)
..|+|+||+|.++|+++|++|+||-.||++|+++||+||.++|..+ +++++++.+
T Consensus 434 ~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fks 488 (713)
T KOG2999|consen 434 TPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFKS 488 (713)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHHH
Confidence 9999999999999999999999999999999999999999999987 999988764
No 4
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=45.29 E-value=42 Score=23.30 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHH
Q 028231 5 HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWN 41 (211)
Q Consensus 5 ~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~ 41 (211)
+|+..++..|..|++..++ +|.+|...|..+-+
T Consensus 25 ~lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~~~ 57 (73)
T PF03735_consen 25 PLSWEKEKLLTELRKELNI----SDEEHREELRRAVS 57 (73)
T ss_dssp S--HHHHHHHHHHHHHTT------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHhc
Confidence 4899999999998877655 58899998887743
No 5
>PHA02819 hypothetical protein; Provisional
Probab=40.71 E-value=52 Score=22.72 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHH
Q 028231 153 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 190 (211)
Q Consensus 153 ~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~ 190 (211)
++||+++|=.| +..+=.||+..++.||+-+..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 57899999888 667778999999998887665
No 6
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=37.98 E-value=13 Score=15.86 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.5
Q ss_pred HhcCCC
Q 028231 59 EMGWQG 64 (211)
Q Consensus 59 ~lGFQ~ 64 (211)
.+||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 378887
No 7
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=37.06 E-value=13 Score=26.47 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=15.1
Q ss_pred HhhccccCCCcHHHHHHHHHHHHHhCCC
Q 028231 19 LRIDVAYDSSIPEHREALRALWNAAFPD 46 (211)
Q Consensus 19 ~~~~~~~d~~~~~H~~~L~~Lw~~l~~~ 46 (211)
......+||.|+ .+++|++||+.+..+
T Consensus 40 dyLA~~vdP~N~-EerlLkELW~va~e~ 66 (81)
T PF11588_consen 40 DYLAKNVDPKNP-EERLLKELWDVADEE 66 (81)
T ss_dssp HHHHT-----SH-HHHHHHHHHHC--HH
T ss_pred HHHHhcCCCCCH-HHHHHHHHHHhCCHH
Confidence 345567899998 578999999987543
No 8
>PHA02650 hypothetical protein; Provisional
Probab=35.69 E-value=65 Score=22.78 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHH
Q 028231 153 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 190 (211)
Q Consensus 153 ~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~ 190 (211)
++||+++|=.| +..+=.||+..++.||+-+..
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD 33 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSD 33 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcC
Confidence 57899999888 667778999999988876654
No 9
>PHA02844 putative transmembrane protein; Provisional
Probab=35.55 E-value=65 Score=22.47 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHH
Q 028231 153 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 191 (211)
Q Consensus 153 ~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~~ 191 (211)
++||+++|=.| +..+=.||+..++.||+-+...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 57899999888 6677789999999888766543
No 10
>PHA02975 hypothetical protein; Provisional
Probab=35.53 E-value=69 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHH
Q 028231 153 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 190 (211)
Q Consensus 153 ~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~ 190 (211)
++||+++|=.| +..+=.||+..++.||+-+..
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcC
Confidence 57899998888 566778999998888766543
No 11
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=29.97 E-value=69 Score=28.74 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCcccchhhhhhHh-------------HhcCCCCCCCCCCC---
Q 028231 9 CQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWK-------------EMGWQGKDPSTDFR--- 72 (211)
Q Consensus 9 ~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~-------------~lGFQ~~dP~tDfR--- 72 (211)
.+.+.++......+.+|+.++++-+.+..-+-+ ..|. ..+.+|+ .|||-.+.|.||--
T Consensus 37 ~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~-s~ph-----~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~F 110 (350)
T KOG4404|consen 37 RERERLERRLANLKRKYNLSEEDYRELERVILK-SEPH-----KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAF 110 (350)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh-cCcc-----ccccccccCcceEEEEEEEeeeccCCCCCCCcCceeh
Confidence 356678888888888999888766665554443 3333 4567886 58999999999954
Q ss_pred --chhhhHH-hhHHH---HHhhChHHHHHHHHh
Q 028231 73 --GGGFISL-ENLLY---LARNFPKSFQDLLRK 99 (211)
Q Consensus 73 --g~G~LgL-~~L~y---F~~~~~~~~~~il~~ 99 (211)
.-|++|. ..|+. |.|+-......++..
T Consensus 111 cm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~ 143 (350)
T KOG4404|consen 111 CMFYALVGIPLTLVMFQSIGERLNTFVAYILRR 143 (350)
T ss_pred hhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355554 23333 345555555555544
No 12
>PHA02692 hypothetical protein; Provisional
Probab=27.96 E-value=1.1e+02 Score=21.10 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHH
Q 028231 153 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 191 (211)
Q Consensus 153 ~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~~ 191 (211)
++||+++|=.| +..+=.||+..++.||+-+...
T Consensus 2 DKLyaaifGVF------mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 2 DKLYAGVFGSF------LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred hhHHHHHHHhh------cCCCHHHHHHHHHHHHHHHcCC
Confidence 57899988887 4445559999999988776543
No 13
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=23.77 E-value=16 Score=24.94 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=9.7
Q ss_pred CCCCCCCCCCch
Q 028231 63 QGKDPSTDFRGG 74 (211)
Q Consensus 63 Q~~dP~tDfRg~ 74 (211)
.+.||..|||..
T Consensus 6 ~S~DPy~DFr~S 17 (66)
T TIGR01568 6 ESDDPYEDFRRS 17 (66)
T ss_pred CCCChHHHHHHH
Confidence 578999999843
No 14
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=23.49 E-value=5.4e+02 Score=24.88 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=27.6
Q ss_pred hhHH-hhHHHHHhhChHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHH
Q 028231 76 FISL-ENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 125 (211)
Q Consensus 76 ~LgL-~~L~yF~~~~~~~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~ 125 (211)
.||. .||.++++..=.....-+.. ++...||+|.+.+-+-...-++
T Consensus 377 pl~~~~~~~~iaka~V~Q~Etev~~----~PeaAfPla~V~l~i~~q~Pdv 423 (591)
T KOG2412|consen 377 PLAYDWCLNFIAKAFVKQAETEVAS----KPEAAFPLAKVILYIWSQFPDV 423 (591)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh----CCcccchHHHHHHHHHHhCchH
Confidence 3444 57777777644332222332 4556799999998776654443
No 15
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=22.26 E-value=16 Score=24.38 Aligned_cols=10 Identities=50% Similarity=0.880 Sum_probs=7.8
Q ss_pred CCCCCCCCCc
Q 028231 64 GKDPSTDFRG 73 (211)
Q Consensus 64 ~~dP~tDfRg 73 (211)
+.||..|||.
T Consensus 1 S~DP~~DFr~ 10 (59)
T PF04844_consen 1 SSDPYEDFRE 10 (59)
T ss_pred CCCHHHHHHH
Confidence 4689999874
No 16
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=22.21 E-value=1.2e+02 Score=20.01 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHHHhhccccCCCc
Q 028231 5 HFWCCQEECLQRLQLRIDVAYDSSI 29 (211)
Q Consensus 5 ~l~~~Q~~~l~~l~~~~~~~~d~~~ 29 (211)
|.|..|.-.|+.|.+.++.+|+..-
T Consensus 15 PmT~aQ~syL~tL~e~Age~~~~~L 39 (57)
T PF11272_consen 15 PMTGAQASYLKTLSEEAGEPFPDDL 39 (57)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCcc
Confidence 6788999999999999999998865
No 17
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=20.44 E-value=1.8e+02 Score=20.17 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHH
Q 028231 153 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLE 189 (211)
Q Consensus 153 ~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~ 189 (211)
++||+++|-.| +..+=.||+..++.+++-+.
T Consensus 2 DKLyaaifGvF------mss~ddDf~~Fi~vVksVlt 32 (72)
T PF12575_consen 2 DKLYAAIFGVF------MSSSDDDFNNFINVVKSVLT 32 (72)
T ss_pred hhHHHHHHhhh------cCCCHHHHHHHHHHHHHHHc
Confidence 56888888877 45556699999988877654
Done!