Query 028231
Match_columns 211
No_of_seqs 111 out of 393
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 47.1 26 0.00089 25.0 4.3 31 5-39 42-72 (102)
2 2fmm_E Protein EMSY; ENT domai 37.4 42 0.0014 25.0 4.3 53 5-61 34-90 (133)
3 3d0w_A YFLH protein; GRAM-posi 35.8 14 0.00048 26.4 1.4 27 19-46 62-88 (104)
4 2lhu_A Mybpc3 protein; cardiac 33.2 10 0.00036 27.9 0.3 29 38-74 83-111 (124)
5 3o39_A Periplasmic protein rel 31.5 90 0.0031 22.1 5.2 37 3-39 15-51 (108)
6 3itf_A Periplasmic adaptor pro 22.4 1E+02 0.0036 23.0 4.3 39 3-41 43-81 (145)
7 3lay_A Zinc resistance-associa 16.0 95 0.0033 24.0 2.8 43 4-46 66-111 (175)
8 3oeo_A Spheroplast protein Y; 15.8 98 0.0033 22.8 2.8 38 3-40 31-68 (138)
9 4hpq_B ATG29, KLTH0D11660P; au 13.4 35 0.0012 26.0 -0.3 49 51-99 86-144 (159)
10 1ya0_A SMG-7 transcript varian 12.9 4.5E+02 0.015 23.4 6.9 70 108-193 216-285 (497)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=47.14 E-value=26 Score=24.95 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHH
Q 028231 5 HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRAL 39 (211)
Q Consensus 5 ~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~L 39 (211)
+|+..|+..|..|++..+ .+|.+|...|..+
T Consensus 42 ~Lsweke~LLt~LR~~L~----IS~eeH~~elrr~ 72 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 72 (102)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 489999999999887655 5689999988766
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=37.41 E-value=42 Score=24.98 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCC---cc-cchhhhhhHhHhc
Q 028231 5 HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD---EE-LRDLISEQWKEMG 61 (211)
Q Consensus 5 ~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~---~~-~~~~~~~~W~~lG 61 (211)
+|+..|+..|..|++..+ .+|.+|...|.++-+.-.-. +. ..+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~----IS~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 488999999999887665 56899999887664321000 00 0123457888777
No 3
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=35.81 E-value=14 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.0
Q ss_pred HhhccccCCCcHHHHHHHHHHHHHhCCC
Q 028231 19 LRIDVAYDSSIPEHREALRALWNAAFPD 46 (211)
Q Consensus 19 ~~~~~~~d~~~~~H~~~L~~Lw~~l~~~ 46 (211)
......+||.|+ .+++|++||+.+..+
T Consensus 62 dyLA~~vdP~N~-EerlLkELW~Va~ee 88 (104)
T 3d0w_A 62 DYLAKHEEPQNG-EEMLLQELWSVADED 88 (104)
T ss_dssp HHHHTCCCCCSH-HHHHHHHHHHHCCHH
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCHH
Confidence 345567999998 578999999987543
No 4
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=33.18 E-value=10 Score=27.85 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=20.7
Q ss_pred HHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCch
Q 028231 38 ALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGG 74 (211)
Q Consensus 38 ~Lw~~l~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~ 74 (211)
++|..+.... .+..+.|-||= =.||||||
T Consensus 83 dvWElL~~A~------pkdYEkIAf~Y--GITDlRGM 111 (124)
T 2lhu_A 83 DVWEILRQAP------PSEYERIAFQH--GVTDLRGM 111 (124)
T ss_dssp CHHHHHTTSC------GGGHHHHHHHT--TCCCHHHH
T ss_pred HHHHHHccCC------cchHHHHHHHh--CcHHHHHH
Confidence 5788776543 25677777773 39999998
No 5
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=31.49 E-value=90 Score=22.15 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=27.9
Q ss_pred CCCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHH
Q 028231 3 NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRAL 39 (211)
Q Consensus 3 ~~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~L 39 (211)
.+.||..|...+..|.+..+.........-++.|..|
T Consensus 15 ~L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 15 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp CSCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4789999999999999998888766665444444433
No 6
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=22.41 E-value=1e+02 Score=23.00 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHH
Q 028231 3 NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWN 41 (211)
Q Consensus 3 ~~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~ 41 (211)
.+.||+.|...|..|.+..+.....-+...++.|..|..
T Consensus 43 ~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ 81 (145)
T 3itf_A 43 GISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVT 81 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHc
Confidence 578999999999999988776655555555555554433
No 7
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=16.00 E-value=95 Score=24.02 Aligned_cols=43 Identities=19% Similarity=0.058 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHHHhhccccCCCc---HHHHHHHHHHHHHhCCC
Q 028231 4 FHFWCCQEECLQRLQLRIDVAYDSSI---PEHREALRALWNAAFPD 46 (211)
Q Consensus 4 ~~l~~~Q~~~l~~l~~~~~~~~d~~~---~~H~~~L~~Lw~~l~~~ 46 (211)
+.||+.|...++.|++.......+-. ...+..|..|+..-.|+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~D 111 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPD 111 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999887665543322 23344455554443344
No 8
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=15.79 E-value=98 Score=22.78 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.3
Q ss_pred CCCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHH
Q 028231 3 NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALW 40 (211)
Q Consensus 3 ~~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw 40 (211)
.+.||+.|+..|+.|.+..+........+-+..|..|.
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li 68 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDII 68 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999998887776543333444455553
No 9
>4hpq_B ATG29, KLTH0D11660P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=13.38 E-value=35 Score=26.03 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=37.2
Q ss_pred hhhhhhHhHhcCCCCCC----------CCCCCchhhhHHhhHHHHHhhChHHHHHHHHh
Q 028231 51 DLISEQWKEMGWQGKDP----------STDFRGGGFISLENLLYLARNFPKSFQDLLRK 99 (211)
Q Consensus 51 ~~~~~~W~~lGFQ~~dP----------~tDfRg~G~LgL~~L~yF~~~~~~~~~~il~~ 99 (211)
..++++|+.+||....+ ..|++-.|-++|..|+..-+...+..+.++..
T Consensus 86 eLISD~yelL~y~~~~dndIeL~VlSqF~d~~~~~dl~Ld~Li~LY~~QNeQLq~l~d~ 144 (159)
T 4hpq_B 86 EMISDQFKQVGYEVRDGNEVCIDAMSRFETPRQLGNLPLEKLVQLYKLQNDQLHSLFNT 144 (159)
T ss_dssp EEEESSCEECCCEEETTTEEEEEEECCCCCCTTTTSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeechhhhhccccCCCCcEEEeehhhCccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999985433 34557899999999999877766666666543
No 10
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=12.93 E-value=4.5e+02 Score=23.40 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccchhhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHH
Q 028231 108 EYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQ 187 (211)
Q Consensus 108 ~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~~~f~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~q 187 (211)
.-||+.|.-|+..++-..++....... ....-.+ ...|-.+|+.+| .+.++.+|..+.+.+.++
T Consensus 216 ~~Pf~~a~~nL~~~f~~~~~~~~~~~~---~~~~~~~----~~~Fv~lh~~lf---------~~~~~~~f~~l~~~~~~~ 279 (497)
T 1ya0_A 216 KFPFPAASTNLQKALSKALESRDEVKT---KWGVSDF----IKAFIKFHGHVY---------LSKSLEKLSPLREKLEEQ 279 (497)
T ss_dssp SBCCHHHHHHHHHHHHHHTTSCCCCCS---SCCHHHH----HHHHHHHHHHHH---------HTCCGGGHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHhhhhhccc---cCChHHH----HHHHHHHHHHHh---------cCCChhhHHHHHHHHHHH
Confidence 468888888888877666543221000 0000000 123444444443 235566788777777777
Q ss_pred HHHHhc
Q 028231 188 LERELL 193 (211)
Q Consensus 188 l~~~l~ 193 (211)
+.+.+.
T Consensus 280 l~~~l~ 285 (497)
T 1ya0_A 280 FKELLF 285 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
Done!