Query 028231
Match_columns 211
No_of_seqs 111 out of 393
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 13:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 42.2 17 0.0012 23.6 4.3 31 5-39 30-60 (90)
2 d1w36b1 c.37.1.19 (B:1-485) Ex 25.6 9.1 0.00066 30.8 0.8 42 25-68 386-428 (485)
3 d1ya0a1 a.118.8.1 (A:1-497) SM 21.5 94 0.0068 25.0 6.7 24 171-194 263-286 (497)
4 d1ie9a_ a.123.1.1 (A:) Vitamin 13.1 51 0.0037 24.6 2.5 27 2-28 3-29 (255)
5 d2r40d1 a.123.1.1 (D:287-529) 12.8 79 0.0058 23.2 3.6 27 4-30 2-28 (243)
6 d1p4ca_ c.1.4.1 (A:) Membrane- 12.5 53 0.0039 25.4 2.6 32 177-208 319-350 (353)
7 d2a61a1 a.4.5.28 (A:5-143) Tra 11.8 1.7E+02 0.013 18.7 5.0 78 114-191 57-138 (139)
8 d1dxea_ c.1.12.5 (A:) 2-dehydr 11.2 1.3E+02 0.0095 22.4 4.5 55 16-70 176-236 (253)
9 d2c1wa1 d.294.1.1 (A:6-289) En 10.8 59 0.0043 25.3 2.2 56 27-87 125-180 (284)
10 d2ifta1 c.66.1.46 (A:11-193) P 10.6 42 0.003 23.7 1.2 31 68-99 48-84 (183)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.16 E-value=17 Score=23.63 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHH
Q 028231 5 HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRAL 39 (211)
Q Consensus 5 ~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~L 39 (211)
+|+..|+..|..|++.. ..+|.+|...|.++
T Consensus 30 ~lsweke~lLt~LR~~L----~IS~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKVL----SISTERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHHT----TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHh
Confidence 58999999999987665 55689999888765
No 2
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.65 E-value=9.1 Score=30.76 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=30.4
Q ss_pred cCCCcHHHHHHHHHHHHHhCCCcccchhhhhhHhHh-cCCCCCCC
Q 028231 25 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 68 (211)
Q Consensus 25 ~d~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~~l-GFQ~~dP~ 68 (211)
|-..|+.+.++|..||... +...+ -.+|+.|..| ||+|+||.
T Consensus 386 fQDts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 386 FQDTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GGGCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred cccCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 4567899999999998642 22112 2478999977 99999874
No 3
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49 E-value=94 Score=25.03 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=18.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHhcc
Q 028231 171 RASYMDFNTVMKSTRRQLERELLL 194 (211)
Q Consensus 171 ~~t~~dF~~V~~~~r~ql~~~l~~ 194 (211)
+.+..+|..+.+.+.+++...+..
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~~l~~ 286 (497)
T d1ya0a1 263 SKSLEKLSPLREKLEEQFKELLFQ 286 (497)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHHHHHHhc
Confidence 566778888888888888777754
No 4
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.09 E-value=51 Score=24.57 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=20.6
Q ss_pred CCCCCcHHHHHHHHHHHHhhccccCCC
Q 028231 2 FNFHFWCCQEECLQRLQLRIDVAYDSS 28 (211)
Q Consensus 2 ~~~~l~~~Q~~~l~~l~~~~~~~~d~~ 28 (211)
.|++||+.|.+.+..+.+.-...++++
T Consensus 3 ~~p~lt~eq~~lI~~l~~Ah~~t~~~~ 29 (255)
T d1ie9a_ 3 LRPKLSEEQQRIIAILLDAHHKTYDPT 29 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999998887654444443
No 5
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth (Heliothis virescens) [TaxId: 7102]}
Probab=12.75 E-value=79 Score=23.18 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHhhccccCCCcH
Q 028231 4 FHFWCCQEECLQRLQLRIDVAYDSSIP 30 (211)
Q Consensus 4 ~~l~~~Q~~~l~~l~~~~~~~~d~~~~ 30 (211)
+||++.|.+.|..|...-+....|...
T Consensus 2 p~ls~eq~~lI~~lv~~~~~~~~p~~~ 28 (243)
T d2r40d1 2 PPLTANQKSLIARLVWYQEGYEQPSEE 28 (243)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTSSCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCHH
Confidence 589999999998888666555555443
No 6
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=12.50 E-value=53 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhccccccCcCCCccccc
Q 028231 177 FNTVMKSTRRQLERELLLEDVTRLEDLPSYSL 208 (211)
Q Consensus 177 F~~V~~~~r~ql~~~l~~~~~~~~~~l~~~~~ 208 (211)
-.++++.++.+|+.++..-.+++++||.+-++
T Consensus 319 v~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l 350 (353)
T d1p4ca_ 319 VDEVLTLLKADIDRTLAQIGCPDITSLSPDYL 350 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhc
Confidence 55778889999999999999999999977553
No 7
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=11.77 E-value=1.7e+02 Score=18.75 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhccCCC---ccccccchhcccccchhhHHHHHHHHHHHHHHHHhhC-CCChhhHHHHHHHHHHHHH
Q 028231 114 AGVNITFMLIQMLDLEAVKP---RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAM-RASYMDFNTVMKSTRRQLE 189 (211)
Q Consensus 114 ~sInvT~~l~~~l~~~~~~~---~~~~~~~f~~ll~~~~~~f~ely~~~f~~f~~~W~~~-~~t~~dF~~V~~~~r~ql~ 189 (211)
..=+||.++-.+.+.|-... ....+...+.+.-.....+.++....-......+... ......|..++..+.+.++
T Consensus 57 ~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le 136 (139)
T d2a61a1 57 AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVME 136 (139)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 34467777777777653211 1111222333222222345555555455555555553 4567788888888888887
Q ss_pred HH
Q 028231 190 RE 191 (211)
Q Consensus 190 ~~ 191 (211)
+.
T Consensus 137 ~~ 138 (139)
T d2a61a1 137 RN 138 (139)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 8
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=11.22 E-value=1.3e+02 Score=22.36 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=39.0
Q ss_pred HHHHhhccccCCCcHHHHHHHHHHHHHhCCC-ccc-----chhhhhhHhHhcCCCCCCCCC
Q 028231 16 RLQLRIDVAYDSSIPEHREALRALWNAAFPD-EEL-----RDLISEQWKEMGWQGKDPSTD 70 (211)
Q Consensus 16 ~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~-~~~-----~~~~~~~W~~lGFQ~~dP~tD 70 (211)
.|..-++.|-+.+++++.+.+.++-+.+... .+. ....-++|.+.||+=-.-.+|
T Consensus 176 DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 176 DLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred cHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 4556778888999999999999999988532 221 123347999999985444444
No 9
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=10.77 E-value=59 Score=25.27 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCchhhhHHhhHHHHHh
Q 028231 27 SSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLAR 87 (211)
Q Consensus 27 ~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~L~yF~~ 87 (211)
.+..+..+.|.+||=.+.....-....++.++.+ |=|+ + -||.+|.|+.|-++|..
T Consensus 125 ~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE-~---k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 125 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGE-S---KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp SSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSC-S---SSSCSCCCCCCHHHHHH
T ss_pred CCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eecc-c---cCCCcccceehHHHHHH
Confidence 4456789999999998875432112234566655 5554 1 25778999999999874
No 10
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=10.64 E-value=42 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCCCCchhhhHHhhH------HHHHhhChHHHHHHHHh
Q 028231 68 STDFRGGGFISLENL------LYLARNFPKSFQDLLRK 99 (211)
Q Consensus 68 ~tDfRg~G~LgL~~L------~yF~~~~~~~~~~il~~ 99 (211)
..=|-|+|.+|+++| ++|++..+..+ +++.+
T Consensus 48 LDlFaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~ 84 (183)
T d2ifta1 48 LDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKK 84 (183)
T ss_dssp EETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHH
T ss_pred eecccCccceeeeeeeecceeeEEeecccchh-hhHhh
Confidence 334779999999999 45888888754 34444
Done!