BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028233
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JK81|MYG1_MOUSE UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2
SV=1
Length = 380
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 126/189 (66%), Gaps = 9/189 (4%)
Query: 24 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCY 83
R+GTHNG+FHCDEAL C ++RL ++ NA+IVR+RDP+ L D V+DVGG Y+P + Y
Sbjct: 45 RIGTHNGTFHCDEALACALLRLLPEYANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRY 104
Query: 84 DHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
DHHQ+ F E G + TKLSSAGLVY HFG++L+A+ L E V ++ +Y
Sbjct: 105 DHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEEDSVVDTIYDKMY 164
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN W +P+Q E F++ M
Sbjct: 165 ENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLNPTWNQPNQDTE---AGFRRAM 220
Query: 199 DLAGKEFLD 207
DL +EFL
Sbjct: 221 DLVQEEFLQ 229
>sp|Q9HB07|MYG1_HUMAN UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10
PE=1 SV=2
Length = 376
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 127/207 (61%), Gaps = 9/207 (4%)
Query: 5 GVSSSPAYSTSSPSQTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLD 64
G S P S R+GTHNG+FHCDEAL C ++RL ++ +A+IVR+RDP+ L
Sbjct: 27 GPESVPPPKRSRSKLMAPPRIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLA 86
Query: 65 DLDAVLDVGGVYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAK 119
D V+DVGG YDP YDHHQ+ F E G + TKLSSAGL+Y HFG +L+A+
Sbjct: 87 SCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQ 146
Query: 120 ELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLD 179
L E V L+ +Y+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN
Sbjct: 147 LLGTSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLNPT 205
Query: 180 WTEPDQSAERENEAFQQGMDLAGKEFL 206
W PDQ E F++ MDL +EFL
Sbjct: 206 WNHPDQDTE---AGFKRAMDLVQEEFL 229
>sp|Q58DG1|MYG1_BOVIN UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1
Length = 381
Score = 169 bits (429), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 125/189 (66%), Gaps = 9/189 (4%)
Query: 24 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCY 83
R+GTHNG+FHCDEAL C ++RL ++ A+IVR+RDP+ L D V+DVGG YDP Y
Sbjct: 46 RIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRY 105
Query: 84 DHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
DHHQ+ F E G + TKLSSAGL+Y HFG +L+A+ L E V L+ +Y
Sbjct: 106 DHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMY 165
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
+NF+E +DA+DNGI+Q++ + PRY+ T LS+RV +LN W +P+Q E F++ M
Sbjct: 166 ENFVEEVDAVDNGISQWEEGE-PRYLLTTTLSARVARLNPTWNQPNQDTE---AGFKRAM 221
Query: 199 DLAGKEFLD 207
DL +EFL
Sbjct: 222 DLVREEFLQ 230
>sp|Q641W2|MYG1_RAT UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1
PE=1 SV=1
Length = 381
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/189 (48%), Positives = 124/189 (65%), Gaps = 9/189 (4%)
Query: 24 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCY 83
R+GTHNG+FHCDEAL C ++RL ++ NA+IVR+RDP+ L D V+DVGG Y+P Y
Sbjct: 46 RIGTHNGTFHCDEALACALLRLLPEYRNAEIVRTRDPEKLALCDIVVDVGGEYNPQRHRY 105
Query: 84 DHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
DHHQ+ F E G + TKLSSAGLVY HFG +L+A+ L E V ++ +Y
Sbjct: 106 DHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSVVDTIYDKMY 165
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN W +PDQ E F++ M
Sbjct: 166 ENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTWNQPDQDTE---AGFRRAM 221
Query: 199 DLAGKEFLD 207
DL +EFL
Sbjct: 222 DLVQEEFLQ 230
>sp|O17606|YK4P_CAEEL UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=3
SV=2
Length = 340
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 118/185 (63%), Gaps = 9/185 (4%)
Query: 25 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYD 84
+GTH+G FHCDEA CFM++ +F + I+R+RD L+ D ++DVGG++D S YD
Sbjct: 5 IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64
Query: 85 HHQKGFEEVFGH----GFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKN 140
HHQ+GF + F TKLSSAGLVY H+G+E+I + L + + + +Y+
Sbjct: 65 HHQRGFTDTMRTLEKLNFDTKLSSAGLVYAHYGREVINQILGGNVSSSMIDLFYHRLYEQ 124
Query: 141 FMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDL 200
F+E+IDAIDNGI+QYD PRY ++ NLSSR G+ N W EP+ A+ E FQQ M
Sbjct: 125 FVESIDAIDNGISQYDG--VPRYHSSGNLSSRTGQFNSHWNEPENDAD---ERFQQAMQF 179
Query: 201 AGKEF 205
G+EF
Sbjct: 180 IGEEF 184
>sp|Q55G91|U160_DICDI UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3
SV=1
Length = 329
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 121/183 (66%), Gaps = 3/183 (1%)
Query: 25 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYD 84
+ TH+GSFH DEAL C++++L + +++I+RSRD V++ +DVG VY+ +D
Sbjct: 6 ICTHSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFD 65
Query: 85 HHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEA 144
HHQ GF E F KLSSAGL+YKH+GK++I + L+ ++ ++ L+ +Y + ++
Sbjct: 66 HHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITEL--LYQKLYDSMIQE 123
Query: 145 IDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKE 204
+D +DNG+ +Y +D PRY + +++S+RVG LN W EP Q E N+ F++ M+L G+
Sbjct: 124 LDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWNEP-QDDEIVNKQFEKAMELMGQY 182
Query: 205 FLD 207
FLD
Sbjct: 183 FLD 185
>sp|Q9P7T6|YIW4_SCHPO UPF0160 protein C694.04c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC694.04c PE=3 SV=1
Length = 324
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 6/188 (3%)
Query: 22 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSND 81
L ++ TH+G+FH DEAL +M+R D+F AQIVRSRDP+VLD D ++DVGG YD
Sbjct: 4 LVKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIK 62
Query: 82 CYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELI---AKELNVDEGHPDVHRLFLAVY 138
+DHHQ+ F + F +ST+LSSAGL+YKHFG+E+I +L ++E D+ L+ VY
Sbjct: 63 YFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINEQ--DLETLYEKVY 120
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
++F+E +DA DNGI+ Y P + +L V W Q + E FQ+
Sbjct: 121 QSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDDQTYLECFQKAS 180
Query: 199 DLAGKEFL 206
DL G F+
Sbjct: 181 DLMGTWFV 188
>sp|P40093|YEY6_YEAST UPF0160 protein YER156C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YER156C PE=1 SV=1
Length = 338
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 119/191 (62%), Gaps = 7/191 (3%)
Query: 23 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDC 82
K++ TH+GSFH DE+L +M+RL +F +A++VRSR+PK + D ++DVG YD
Sbjct: 15 KQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVK-F 73
Query: 83 YDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFM 142
+DHHQ+GF E F + TKLSSAGL++KH+G+++I LN D+ L+ VYK F+
Sbjct: 74 FDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFV 133
Query: 143 EAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDWTEPDQSAERENEAFQQG 197
EA+DA DNGI++Y D++ P + +N ++ + +N +W E D S E + F +
Sbjct: 134 EALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNE-DTSDESFDRCFARA 192
Query: 198 MDLAGKEFLDV 208
+ G F+ +
Sbjct: 193 SEFIGGVFVTL 203
>sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn_0489/CP_0265/CPj0489/CpB0509 OS=Chlamydia
pneumoniae GN=CPn_0489 PE=3 SV=2
Length = 290
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 19 QTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDP 78
Q P + +GTH+GSFH DE C ++ + D +I+RSRDP VL + V DVGGVY
Sbjct: 2 QIP-RSIGTHDGSFHADEVTACALLIIFDLVDENKIIRSRDPVVLSKCEYVCDVGGVYSI 60
Query: 79 SNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKEL 116
N +DHHQ ++ SSAG++ H+ KE
Sbjct: 61 ENKRFDHHQVSYD--------GSWSSAGMIL-HYLKEF 89
>sp|O84391|Y386_CHLTR UPF0160 protein CT_386 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=CT_386 PE=3 SV=2
Length = 289
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 19 QTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDP 78
Q P + VGTH+GSFH DE C ++ + D +IVR+RDP+ L + V DVGG Y
Sbjct: 2 QIP-RSVGTHDGSFHADEVTACALLIMFDLVDENKIVRTRDPQKLAQCEYVCDVGGRYST 60
Query: 79 SNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHF 112
+ +DHHQ ++ SSAG+V +
Sbjct: 61 EHKRFDHHQV--------SYTGSWSSAGMVLDYL 86
>sp|Q9PK08|Y665_CHLMU UPF0160 protein TC_0665 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=TC_0665 PE=3 SV=2
Length = 289
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 19 QTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDP 78
Q P + VGTH+GSFH DE C ++ + D +I+R+RD + L + V DVGG Y
Sbjct: 2 QIP-RSVGTHDGSFHADEVTACALLIMFDLVDKDKIIRTRDSEKLAQCEYVCDVGGRYSI 60
Query: 79 SNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHF 112
++ +DHHQ ++ SSAG+V +
Sbjct: 61 ADKRFDHHQV--------SYTGSWSSAGMVLDYL 86
>sp|Q2M021|TTC36_DROPS Tetratricopeptide repeat protein 36 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA12762 PE=3 SV=1
Length = 185
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 27 THNGSFHCDEALGCFMIRLTD----KFFN--AQIVR--SRDPKVLDDLDAVLDVGGVYDP 78
T GSF DEAL F + L N AQ +R RD + LDDL+ L++
Sbjct: 64 TEKGSF--DEALKVFQLALNQAQRASVLNNRAQTLRLAKRDGEALDDLNKALEMASDQQS 121
Query: 79 SNDCYDHHQKG 89
C+ H Q+G
Sbjct: 122 RTKCHAHCQRG 132
>sp|Q9INJ1|RDRP_BAVJK RNA-directed RNA polymerase VP1 OS=Banna virus (strain
Indonesia/JKT-6423/1980) PE=3 SV=1
Length = 1214
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 75/200 (37%), Gaps = 29/200 (14%)
Query: 25 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYD 84
V + G H E L M +K N + ++ D KV+ D + + + SN C
Sbjct: 964 VNPNGGGIHISEGLKRLMPEYCEKHLNELVYKTLDDKVIRDYTSDIII------SNICKG 1017
Query: 85 HHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEA 144
K + F F L++ V + L DEG +VHR+ Y+N +
Sbjct: 1018 KLSKAPKLAFYANFYLSLTNTNGVDSPY--------LTADEGVKNVHRVIGLSYRNTLST 1069
Query: 145 IDAIDNGINQYDTDKP---PRYVNNTNL----------SSRVGKLNLDWTEPDQSAEREN 191
+ + +++ + P P Y+ ++ + R LD TEP +A E
Sbjct: 1070 --SPTSNVDRILRNNPGSAPAYLTGNDILGVLSDYPYQNWRTVVELLDITEPSATAIIEV 1127
Query: 192 EAFQQGMDLAGKEFLDVSFF 211
Q LA K+ + F
Sbjct: 1128 ATNQMHAYLADKDLNTANLF 1147
>sp|P50388|BGAL_SULSH Beta-galactosidase OS=Sulfolobus shibatae GN=bglY PE=3 SV=1
Length = 489
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 47 DKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTK---LS 103
D +I+R + V DDL LD GV + +KG+ + G+G + +S
Sbjct: 291 DAIIRGEIMRGSEKVVRDDLRGRLDWIGVNYYTRTVVKKTEKGYTSLGGYGHGCERNSVS 350
Query: 104 SAGLVYKHFGKELIAKEL-NVDEGHPDVHRLFLAVYKN 140
AGL FG E + L +V + + + L++ V +N
Sbjct: 351 LAGLPTSDFGWEFFPEGLYDVLTKYWNRYHLYMYVTEN 388
>sp|P22498|BGAL_SULSO Beta-galactosidase OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=lacS PE=1 SV=2
Length = 489
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 47 DKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEV--FGHGFS-TKLS 103
D +I R + V DDL LD GV + +KG+ + +GHG +S
Sbjct: 291 DAIIRGEITRGNEKIVRDDLKGRLDWIGVNYYTRTVVKRTEKGYVSLGGYGHGCERNSVS 350
Query: 104 SAGLVYKHFGKELIAKEL-NVDEGHPDVHRLFLAVYKN 140
AGL FG E + L +V + + + L++ V +N
Sbjct: 351 LAGLPTSDFGWEFFPEGLYDVLTKYWNRYHLYMYVTEN 388
>sp|Q5AYZ1|RT10_EMENI 37S ribosomal protein S10, mitochondrial OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=rsm10 PE=3 SV=2
Length = 287
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 6 VSSSPAYSTSSPSQTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRS 57
V+SSP+ T+ P Q L+ T H D + + RLTD NA++ RS
Sbjct: 53 VASSPS-QTTRPEQKSLEEETTKQTQTHADSTVNEWGARLTDLNINARLPRS 103
>sp|Q8CXS3|TGT_LEPIN Queuine tRNA-ribosyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=tgt
PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 GHPDVHR-LFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL---DWT 181
H D +R L+L + +D + NG++ +D P R N + + +GK+NL W
Sbjct: 235 AHTDRNRPLYLMGVGTVPDILDGVKNGVDMFDCVLPTRNARNGQVFTTLGKINLRNEKWK 294
Query: 182 EPD 184
D
Sbjct: 295 SSD 297
>sp|Q72TL3|TGT_LEPIC Queuine tRNA-ribosyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=tgt PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 GHPDVHR-LFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL---DWT 181
H D +R L+L + +D + NG++ +D P R N + + +GK+NL W
Sbjct: 235 AHTDRNRPLYLMGVGTVPDILDGVKNGVDMFDCVLPTRNARNGQVFTTLGKINLRNEKWK 294
Query: 182 EPD 184
D
Sbjct: 295 SSD 297
>sp|Q3ATZ1|PUR9_CHLCH Bifunctional purine biosynthesis protein PurH OS=Chlorobium
chlorochromatii (strain CaD3) GN=purH PE=3 SV=1
Length = 524
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 15/154 (9%)
Query: 59 DPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTK-LSSAGLVYKHFGKELI 117
DP + L +V D G+ D C + + G E +F G + K L AG+
Sbjct: 3 DPVIKRALVSVSDKTGIVD---FCRELSELGVE-IFSTGGTLKTLQDAGIAAASISTITG 58
Query: 118 AKEL---NVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRY-----VNNTNL 169
E+ V HP +H LAV +N A DNGI+ D Y V N+
Sbjct: 59 FPEIMDGRVKTLHPKIHGGLLAVRENANHVKQAADNGISFIDLVVVNLYPFEATVAKPNV 118
Query: 170 SSRVGKLNLDWTEPD--QSAERENEAFQQGMDLA 201
S N+D P +SA + NE+ D A
Sbjct: 119 SFEDAIENIDIGGPSMLRSAAKNNESVTVVTDSA 152
>sp|P10577|NTRC_RHIME Nitrogen assimilation regulatory protein OS=Rhizobium meliloti
(strain 1021) GN=ntrC PE=1 SV=2
Length = 484
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 122 NVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 181
+ + PD+ L ++ FM AI A + G Y KP +L+ +G +
Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY-LPKP------FDLTELIGIIGRALA 120
Query: 182 EPDQSAERENEAFQQGMDLAGK 203
EP + + + Q GM L G+
Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGR 142
>sp|Q04Z48|TGT_LEPBL Queuine tRNA-ribosyltransferase OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain L550) GN=tgt PE=3 SV=1
Length = 374
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRY 163
S G K F + L D P L+L + +D + NG++ +D P R
Sbjct: 218 SVGEPRKDFIRILEGVSAYTDRSRP----LYLMGVGTVPDILDGVKNGVDMFDCVLPTRN 273
Query: 164 VNNTNLSSRVGKLNL---DWTEPD 184
N + + +GK+NL W D
Sbjct: 274 ARNGQVFTSLGKINLRNEKWKSSD 297
>sp|Q04UC6|TGT_LEPBJ Queuine tRNA-ribosyltransferase OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain JB197) GN=tgt PE=3 SV=1
Length = 374
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRY 163
S G K F + L D P L+L + +D + NG++ +D P R
Sbjct: 218 SVGEPRKDFIRILEGVSAYTDRSRP----LYLMGVGTVPDILDGVKNGVDMFDCVLPTRN 273
Query: 164 VNNTNLSSRVGKLNL---DWTEPD 184
N + + +GK+NL W D
Sbjct: 274 ARNGQVFTSLGKINLRNEKWKSSD 297
>sp|Q7M8N8|TGT_WOLSU Queuine tRNA-ribosyltransferase OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=tgt PE=3 SV=1
Length = 377
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 145 IDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL 178
I+AID G++ +D P R N L + GKL++
Sbjct: 260 IEAIDRGVDMFDCVMPTRNARNGTLFTHFGKLSI 293
>sp|A7GHT6|TGT_CLOBL Queuine tRNA-ribosyltransferase OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 121 LNVDEGHPDVHRLFLAVYKNFME--------------AIDAIDNGINQYDTDKPPRYVNN 166
L V E H D++R+ AV + E ++A+D G++ +D P R +
Sbjct: 222 LAVGESHEDMYRIIDAVVPHLPEDKPIYLMGVGIPSNILEAVDRGVDFFDCVLPARNGRH 281
Query: 167 TNLSSRVGKLNL 178
++ ++ GK+NL
Sbjct: 282 AHVFTKEGKINL 293
>sp|B1IMF1|TGT_CLOBK Queuine tRNA-ribosyltransferase OS=Clostridium botulinum (strain
Okra / Type B1) GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 121 LNVDEGHPDVHRLFLAVYKNFME--------------AIDAIDNGINQYDTDKPPRYVNN 166
L V E H D++R+ AV + E ++A+D G++ +D P R +
Sbjct: 222 LAVGESHEDMYRIIDAVVPHLPEDKPIYLMGVGIPSNILEAVDRGVDFFDCVLPARNGRH 281
Query: 167 TNLSSRVGKLNL 178
++ ++ GK+NL
Sbjct: 282 AHVFTKEGKINL 293
>sp|B1L0B0|TGT_CLOBM Queuine tRNA-ribosyltransferase OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 121 LNVDEGHPDVHRLFLAVYKNFME--------------AIDAIDNGINQYDTDKPPRYVNN 166
L V E H D++R+ AV + E ++A+D G++ +D P R +
Sbjct: 222 LAVGESHEDMYRIIDAVVPHLPEDKPIYLMGVGIPSNILEAVDRGVDFFDCVLPARNGRH 281
Query: 167 TNLSSRVGKLNL 178
++ ++ GK+NL
Sbjct: 282 AHVFTKEGKINL 293
>sp|C1FKF9|TGT_CLOBJ Queuine tRNA-ribosyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 121 LNVDEGHPDVHRLFLAVYKNFME--------------AIDAIDNGINQYDTDKPPRYVNN 166
L V E H D++R+ AV + E ++A+D G++ +D P R +
Sbjct: 222 LAVGESHEDMYRIIDAVVPHLPEDKPIYLMGVGIPSNILEAVDRGVDFFDCVLPARNGRH 281
Query: 167 TNLSSRVGKLNL 178
++ ++ GK+NL
Sbjct: 282 AHVFTKEGKINL 293
>sp|C3KTD0|TGT_CLOB6 Queuine tRNA-ribosyltransferase OS=Clostridium botulinum (strain
657 / Type Ba4) GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 121 LNVDEGHPDVHRLFLAVYKNFME--------------AIDAIDNGINQYDTDKPPRYVNN 166
L V E H D++R+ AV + E ++A+D G++ +D P R +
Sbjct: 222 LAVGESHEDMYRIIDAVVPHLPEDKPIYLMGVGIPSNILEAVDRGVDFFDCVLPARNGRH 281
Query: 167 TNLSSRVGKLNL 178
++ ++ GK+NL
Sbjct: 282 AHVFTKEGKINL 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,097,794
Number of Sequences: 539616
Number of extensions: 3751535
Number of successful extensions: 8945
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8910
Number of HSP's gapped (non-prelim): 41
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)