Query 028233
Match_columns 211
No_of_seqs 123 out of 346
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2948 Predicted metal-bindin 100.0 3.5E-82 7.5E-87 564.2 14.7 185 22-209 4-188 (327)
2 PF03690 UPF0160: Uncharacteri 100.0 6.2E-81 1.3E-85 564.5 18.4 184 23-209 1-184 (318)
3 COG4286 Uncharacterized conser 100.0 7.7E-66 1.7E-70 456.8 16.8 179 21-205 3-181 (306)
4 PRK11709 putative L-ascorbate 69.0 7.5 0.00016 36.3 4.5 38 67-104 313-353 (355)
5 TIGR03609 S_layer_CsaB polysac 54.0 9.8 0.00021 33.3 2.3 38 35-74 14-73 (298)
6 PRK10017 colanic acid biosynth 48.6 17 0.00037 34.7 3.1 12 63-74 115-126 (426)
7 COG2404 Predicted phosphohydro 43.9 5.9 0.00013 37.3 -0.7 33 81-114 86-126 (339)
8 PRK15008 HTH-type transcriptio 43.6 19 0.00042 29.9 2.4 12 104-115 51-62 (212)
9 PF00386 C1q: C1q domain; Int 38.1 15 0.00033 28.2 0.9 22 68-89 24-45 (127)
10 PHA02094 hypothetical protein 36.2 36 0.00078 25.4 2.5 42 107-148 1-53 (81)
11 smart00110 C1Q Complement comp 31.5 26 0.00055 28.2 1.2 22 68-89 30-51 (135)
12 PF04676 CwfJ_C_2: Protein sim 30.8 34 0.00073 26.0 1.7 17 108-124 50-66 (98)
13 smart00846 Gp_dh_N Glyceraldeh 27.2 46 0.001 27.2 2.1 25 52-76 70-98 (149)
14 cd08395 C2C_Munc13 C2 domain t 26.0 29 0.00064 27.3 0.7 9 174-182 47-55 (120)
15 TIGR03613 RutR pyrimidine util 23.6 69 0.0015 25.9 2.5 12 104-115 41-52 (202)
16 cd08686 C2_ABR C2 domain in th 23.5 35 0.00075 27.3 0.6 10 174-183 40-49 (118)
17 COG2332 CcmE Cytochrome c-type 23.5 26 0.00056 29.6 -0.1 12 28-39 111-122 (153)
18 PF04542 Sigma70_r2: Sigma-70 23.3 2.3E+02 0.0049 18.6 5.6 43 109-151 2-44 (71)
19 KOG1030 Predicted Ca2+-depende 22.9 34 0.00074 29.3 0.5 11 173-183 46-56 (168)
20 KOG0185 20S proteasome, regula 22.3 38 0.00082 30.7 0.7 103 49-182 26-142 (256)
21 PF01368 DHH: DHH family; Int 22.1 50 0.0011 25.2 1.3 47 68-114 67-127 (145)
22 COG0057 GapA Glyceraldehyde-3- 21.7 61 0.0013 30.6 2.0 45 50-94 70-119 (335)
23 PF00455 DeoRC: DeoR C termina 21.7 70 0.0015 26.1 2.1 42 38-81 30-77 (161)
24 cd08681 C2_fungal_Inn1p-like C 20.9 44 0.00095 24.9 0.7 8 175-182 44-51 (118)
25 cd04016 C2_Tollip C2 domain pr 20.9 42 0.00091 26.4 0.6 8 175-182 44-51 (121)
26 PRK09480 slmA division inhibit 20.6 79 0.0017 25.2 2.2 12 104-115 43-54 (194)
27 cd08382 C2_Smurf-like C2 domai 20.2 46 0.001 25.4 0.7 9 174-182 42-50 (123)
28 cd08400 C2_Ras_p21A1 C2 domain 20.1 43 0.00094 25.8 0.6 10 173-182 41-50 (126)
No 1
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=100.00 E-value=3.5e-82 Score=564.22 Aligned_cols=185 Identities=58% Similarity=1.021 Sum_probs=178.1
Q ss_pred CceEEecCCCcchhHHHHHHHHHhccccCCceEEEccCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCccc
Q 028233 22 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTK 101 (211)
Q Consensus 22 ~~~IgTH~G~FHaDEvLA~~mLr~l~~y~~a~IvRTRD~~~l~~cDiVvDVGg~YDp~~~rfDHHQr~F~~t~~~~~~~k 101 (211)
+++||||||+|||||||||+|||++|+|+||+|||||||++|++|||||||||+|||+++|||||||+|+|||+.++.||
T Consensus 4 ~~~i~THnG~FH~DEalAc~mLr~lp~f~dAeIvRtRd~~~l~s~DIvvDVGg~yDp~~~ryDHHQr~F~ETfs~~~~tK 83 (327)
T KOG2948|consen 4 TKKIGTHNGTFHCDEALACFMLRLLPEFKDAEIVRTRDPKVLESCDIVVDVGGVYDPEKKRYDHHQRGFFETFSPKYKTK 83 (327)
T ss_pred CceEEecCCceehhHHHHHHHHHhccccCCCeeEecCCHHHHhhcCEEEecCccccccccccchhhhhhhhhcCCcccee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhhhccCccccCCCCCCccccCCChhhhhcccCCCCC
Q 028233 102 LSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 181 (211)
Q Consensus 102 lSSAGLIykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDaiDNGv~~~~~~~~~~y~~~~~Ls~rV~~lNP~W~ 181 (211)
||||||||||||++||+++++...++++++.+|.+||++|||++|||||||++|. +++|+|..+|+||+||++|||.||
T Consensus 84 LSSAGLIykhyG~~vi~~~l~~~~s~~~~~~l~~kvY~~Fve~~DAiDNGi~~y~-~~~Pry~~~~~l~~rv~~~N~~w~ 162 (327)
T KOG2948|consen 84 LSSAGLIYKHYGREVISKILQNKVSSSDLDLLYDKVYKNFVEALDAIDNGISQYG-EIEPRYKSSTSLSHRVGRFNPDWN 162 (327)
T ss_pred ecccceeHHHhhHHHHHHHhcccCChhHHHHHHHHHHHHHHHHhhccccchhhhc-CCCCccccccchHHHHhhcCCCcc
Confidence 9999999999999999999998889999999999999999999999999999994 789999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhc
Q 028233 182 EPDQSAERENEAFQQGMDLAGKEFLDVS 209 (211)
Q Consensus 182 ~~~~~~~~~d~~F~~A~~~~~~ef~~~~ 209 (211)
+ + ++++++++|.+||+++|+||++..
T Consensus 163 e-~-~~~~~~e~F~~Am~~vg~ef~~~v 188 (327)
T KOG2948|consen 163 E-D-SDDDEDERFQRAMDLVGKEFVNSV 188 (327)
T ss_pred c-C-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 8 3 566899999999999999999864
No 2
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=100.00 E-value=6.2e-81 Score=564.51 Aligned_cols=184 Identities=51% Similarity=0.916 Sum_probs=176.3
Q ss_pred ceEEecCCCcchhHHHHHHHHHhccccCCceEEEccCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCcccc
Q 028233 23 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKL 102 (211)
Q Consensus 23 ~~IgTH~G~FHaDEvLA~~mLr~l~~y~~a~IvRTRD~~~l~~cDiVvDVGg~YDp~~~rfDHHQr~F~~t~~~~~~~kl 102 (211)
|+||||||+|||||||||+|||+||+|++++|+|||||++|++|||||||||+|||+++|||||||+|++||..+++|||
T Consensus 1 K~I~TH~G~FHaDEvlA~~lL~~l~~y~~~~IvRTRd~~~l~~cDiVvDVGg~yDp~~~rfDHHQ~~f~~tf~~~~~~~l 80 (318)
T PF03690_consen 1 KKIGTHSGSFHADEVLACALLKLLPEYKDAEIVRTRDPEVLEKCDIVVDVGGVYDPEKGRFDHHQRGFNETFSRENGIKL 80 (318)
T ss_pred CeEEecCCCcchHHHHHHHHHHHccccCCCcEEEeCChhhhccCCEEEecCCccccccCccccccccCccccccCCCcee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred cchhhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhhhccCccccCCCCCCccccCCChhhhhcccCCCCCC
Q 028233 103 SSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTE 182 (211)
Q Consensus 103 SSAGLIykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDaiDNGv~~~~~~~~~~y~~~~~Ls~rV~~lNP~W~~ 182 (211)
|||||||+|||++||+++++...++++++.||++||++||++||||||||+++ +++++|..+|+||+||++|||.||+
T Consensus 81 SSAGLIy~~fG~~ii~~~~~~~~~~~~~~~l~~~iy~~fv~~iDaiDNGv~~~--~~~~~y~~~~~ls~~V~~~Np~w~~ 158 (318)
T PF03690_consen 81 SSAGLIYKHFGKEIIRNLLGDPVDEEDIELLYEKIYESFVESIDAIDNGVSIY--DGEPKYKINTSLSSRVSRLNPSWNE 158 (318)
T ss_pred ecccHHHHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHHhhhhhcCCccc--CccccccCCCCHHHHHHHhCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999 4689999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhc
Q 028233 183 PDQSAERENEAFQQGMDLAGKEFLDVS 209 (211)
Q Consensus 183 ~~~~~~~~d~~F~~A~~~~~~ef~~~~ 209 (211)
+ .+++++|++|++||+||+++|.+..
T Consensus 159 ~-~~~~~~~~~F~~A~~l~~~~f~~~v 184 (318)
T PF03690_consen 159 P-DDDEDEDERFEKAMELAGEEFENRV 184 (318)
T ss_pred C-CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 5 3457899999999999999999764
No 3
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=100.00 E-value=7.7e-66 Score=456.79 Aligned_cols=179 Identities=44% Similarity=0.741 Sum_probs=158.4
Q ss_pred CCceEEecCCCcchhHHHHHHHHHhccccCCceEEEccCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCcc
Q 028233 21 PLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFST 100 (211)
Q Consensus 21 ~~~~IgTH~G~FHaDEvLA~~mLr~l~~y~~a~IvRTRD~~~l~~cDiVvDVGg~YDp~~~rfDHHQr~F~~t~~~~~~~ 100 (211)
+.++|+||||+|||||||||+|||+|+.||+++|||||||++|++|||||||||+|||+++|||||||+|++||++++.|
T Consensus 3 ~p~~l~THsG~FHaDEvlA~~~L~~l~l~~dakIVRsRdp~~l~s~div~DVGg~yd~e~krFDHHQr~f~~tfspky~~ 82 (306)
T COG4286 3 IPMKLVTHSGSFHADEVLASAVLRLLDLFPDAKIVRSRDPQVLDSCDIVYDVGGVYDPEKKRFDHHQRSFNETFSPKYKT 82 (306)
T ss_pred CCceEEecCCcccHHHHHHHHHHHHhccCCcceeeeccChhhhhcCCEEEecCcccccccccccccccccCcccCccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhhhccCccccCCCCCCccccCCChhhhhcccCCCC
Q 028233 101 KLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 180 (211)
Q Consensus 101 klSSAGLIykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDaiDNGv~~~~~~~~~~y~~~~~Ls~rV~~lNP~W 180 (211)
|||||||||||||+++|..+ ++..++++++.||+++|+.||+++||+|||+..|. +++| |+ +||.+|+.|||.|
T Consensus 83 klSSaGLI~kyfgr~~l~~~-~~~~~~~~~~~l~e~vy~~fv~~~Da~DNG~~~~~-~i~p-f~---sl~~iv~~~np~~ 156 (306)
T COG4286 83 KLSSAGLIYKYFGRDGLATY-GINRSEDDLETLYEKVYNTFVLGVDAIDNGISIYG-EIEP-FR---SLPDIVESFNPDW 156 (306)
T ss_pred cccccchHHHHhhhhHHHHh-CCccchhhHHHHHHHHHHhhhcccccccCcccccc-ccCc-cc---chHHHHHhcCCCc
Confidence 99999999999999999874 56688999999999999999999999999999983 4555 44 6999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH
Q 028233 181 TEPDQSAERENEAFQQGMDLAGKEF 205 (211)
Q Consensus 181 ~~~~~~~~~~d~~F~~A~~~~~~ef 205 (211)
++++.+++...++|..|.++++.-|
T Consensus 157 ~~e~~~d~~F~~al~~a~~~l~~~~ 181 (306)
T COG4286 157 SDEDADDEGFLEALAFASDFLDNLF 181 (306)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9854444444555555555554433
No 4
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=68.99 E-value=7.5 Score=36.30 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=29.7
Q ss_pred cEEEecCCccc-CC--CCCCCCCCCCccccccCCCcccccc
Q 028233 67 DAVLDVGGVYD-PS--NDCYDHHQKGFEEVFGHGFSTKLSS 104 (211)
Q Consensus 67 DiVvDVGg~YD-p~--~~rfDHHQr~F~~t~~~~~~~klSS 104 (211)
=.+..|||.|. |. .++-=||-|||.+.|..+.++|+.|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (355)
T PRK11709 313 PFIWQVGGKFTYPQDKDRFEYHYPRGFDDCFTIEPDLPFKS 353 (355)
T ss_pred ceEEecCCEecCCCCcCceeEecCCCchhhhcCCCCCCccc
Confidence 48899999996 22 2245589999999999877888876
No 5
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=53.95 E-value=9.8 Score=33.32 Aligned_cols=38 Identities=37% Similarity=0.365 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhccccCCceE-EEccCCCC---------------------CCCccEEEecCC
Q 028233 35 DEALGCFMIRLTDKFFNAQI-VRSRDPKV---------------------LDDLDAVLDVGG 74 (211)
Q Consensus 35 DEvLA~~mLr~l~~y~~a~I-vRTRD~~~---------------------l~~cDiVvDVGg 74 (211)
||++.-+||+.++ +++++ +=+++|+. +.+||+|+-.||
T Consensus 14 De~~l~~~l~~l~--~~~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG 73 (298)
T TIGR03609 14 DEALLAALLRELP--PGVEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALRRADVVIWGGG 73 (298)
T ss_pred hHHHHHHHHHhcC--CCCeEEEecCChHHHHhhcCceEEccCCHHHHHHHHHHCCEEEECCc
Confidence 9999999998876 45543 35676632 568999998888
No 6
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=48.61 E-value=17 Score=34.70 Aligned_cols=12 Identities=50% Similarity=0.974 Sum_probs=10.7
Q ss_pred CCCccEEEecCC
Q 028233 63 LDDLDAVLDVGG 74 (211)
Q Consensus 63 l~~cDiVvDVGg 74 (211)
|.+||+|++.||
T Consensus 115 l~~aDlvI~gGG 126 (426)
T PRK10017 115 LSGYDAIIQVGG 126 (426)
T ss_pred HHhCCEEEECCC
Confidence 678999999999
No 7
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=43.87 E-value=5.9 Score=37.26 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCCCCCCCccccc---cC-----CCcccccchhhhHHHHHH
Q 028233 81 DCYDHHQKGFEEVF---GH-----GFSTKLSSAGLVYKHFGK 114 (211)
Q Consensus 81 ~rfDHHQr~F~~t~---~~-----~~~~klSSAGLIykhfG~ 114 (211)
..|||||-+- +|- .. -+.++.|.||+||+++=.
T Consensus 86 ~wiDHH~t~~-e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~ 126 (339)
T COG2404 86 KWIDHHKTAN-ETKEEVREAGVSVYVDDSRCAAGVVYEYLKP 126 (339)
T ss_pred EEeccccccc-hhHHHhhhcCcEEEECCcchhhhhhhheecc
Confidence 4799999774 211 11 245788899999988544
No 8
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=43.61 E-value=19 Score=29.92 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=9.9
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|.|.||.|||..
T Consensus 51 s~gtiY~hF~sK 62 (212)
T PRK15008 51 SKTNLLYYFPSK 62 (212)
T ss_pred CHHHHHHHCCCH
Confidence 678999999865
No 9
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=38.09 E-value=15 Score=28.25 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=17.0
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 028233 68 AVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 68 iVvDVGg~YDp~~~rfDHHQr~ 89 (211)
+++|+|+.|||++++|-=...|
T Consensus 24 v~~N~g~~yn~~tG~Ftap~~G 45 (127)
T PF00386_consen 24 VLTNIGNAYNPSTGIFTAPVPG 45 (127)
T ss_dssp EEEETTS-EETTTTEEE-SS-E
T ss_pred EEEcCCCccEeecCEEecCCCC
Confidence 8899999999999998777666
No 10
>PHA02094 hypothetical protein
Probab=36.22 E-value=36 Score=25.44 Aligned_cols=42 Identities=21% Similarity=0.496 Sum_probs=24.3
Q ss_pred hhHHHHHHH-----HHHH------HhCCCCCChhHHHHHHHHHHHHHhhhhhh
Q 028233 107 LVYKHFGKE-----LIAK------ELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (211)
Q Consensus 107 LIykhfG~e-----ii~~------~l~~~~~~~~~~~l~~kvy~~fie~IDai 148 (211)
+||.|||+. +|.. .|....--+.+..-|..-|+-|+.+|-+.
T Consensus 1 miyeh~~~~sfwgs~~~~~m~~~n~l~~t~~l~~~~~k~n~~ye~~~ksig~m 53 (81)
T PHA02094 1 MIYEHFDKNSFWGSILIDGMKLNNKLSNTIMLPSTRKKLNEKYEFFAKSVGAM 53 (81)
T ss_pred CchhhcCccchhHHHHHHHHHHHHhccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 578888876 2222 22211112334444777889999998654
No 11
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=31.47 E-value=26 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 028233 68 AVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 68 iVvDVGg~YDp~~~rfDHHQr~ 89 (211)
+.+++|+.|||.+++|-=-.+|
T Consensus 30 v~~N~g~~yd~~TG~Ftcpv~G 51 (135)
T smart00110 30 VLYNQQGHYDPRTGKFTCPVPG 51 (135)
T ss_pred EEECCCCCccCCCCEEECeece
Confidence 6789999999999999877766
No 12
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=30.75 E-value=34 Score=25.98 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhCCC
Q 028233 108 VYKHFGKELIAKELNVD 124 (211)
Q Consensus 108 IykhfG~eii~~~l~~~ 124 (211)
+-..||++||+.+|+++
T Consensus 50 f~~qFgReVla~lL~lp 66 (98)
T PF04676_consen 50 FPLQFGREVLAGLLNLP 66 (98)
T ss_pred cCcchHHHHHHHHhCCC
Confidence 44579999999999865
No 13
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=27.21 E-value=46 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=20.1
Q ss_pred ceEEEccCCCCCC----CccEEEecCCcc
Q 028233 52 AQIVRSRDPKVLD----DLDAVLDVGGVY 76 (211)
Q Consensus 52 a~IvRTRD~~~l~----~cDiVvDVGg~Y 76 (211)
..+.+.|||+.|. .+|+|+|.-|.|
T Consensus 70 i~~~~~~~p~~~~w~~~gvDiVie~tG~f 98 (149)
T smart00846 70 IKVLAERDPANLPWKELGVDIVVECTGKF 98 (149)
T ss_pred EEEEecCChHHCcccccCCeEEEeccccc
Confidence 4678889998774 579999998865
No 14
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=25.97 E-value=29 Score=27.27 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=7.5
Q ss_pred cccCCCCCC
Q 028233 174 GKLNLDWTE 182 (211)
Q Consensus 174 ~~lNP~W~~ 182 (211)
+.+||.|||
T Consensus 47 ~tlnPvwNE 55 (120)
T cd08395 47 NNWSPKYNE 55 (120)
T ss_pred CCCCCccCc
Confidence 448999998
No 15
>TIGR03613 RutR pyrimidine utilization regulatory protein R. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).
Probab=23.64 E-value=69 Score=25.88 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=10.0
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|.|.+|.||+..
T Consensus 41 s~~~lY~hF~sK 52 (202)
T TIGR03613 41 SKTNLLYYFPSK 52 (202)
T ss_pred CHHHHHHHcCCH
Confidence 678999999854
No 16
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=23.50 E-value=35 Score=27.32 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=8.0
Q ss_pred cccCCCCCCC
Q 028233 174 GKLNLDWTEP 183 (211)
Q Consensus 174 ~~lNP~W~~~ 183 (211)
..+||.|||.
T Consensus 40 ~TlnPvWnE~ 49 (118)
T cd08686 40 DTTEPNWNEE 49 (118)
T ss_pred CCCCCccceE
Confidence 3599999983
No 17
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=26 Score=29.64 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.3
Q ss_pred cCCCcchhHHHH
Q 028233 28 HNGSFHCDEALG 39 (211)
Q Consensus 28 H~G~FHaDEvLA 39 (211)
+.|.||||+|||
T Consensus 111 ~~~~f~A~~vLA 122 (153)
T COG2332 111 GGGVFEAKEVLA 122 (153)
T ss_pred CCCEEEeeehhh
Confidence 447999999998
No 18
>PF04542 Sigma70_r2: Sigma-70 region 2 ; InterPro: IPR007627 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core-binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [, ]. The aromatic residues of the recognition helix, found at the C terminus of this domain are thought to mediate strand separation, thereby allowing transcription initiation [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1OR7_B 1H3L_B 2Z2S_C 2Q1Z_C 2O7G_B 1SMY_F 1IW7_P 2BE5_F 2A6E_F 2CW0_F ....
Probab=23.30 E-value=2.3e+02 Score=18.59 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhhhccC
Q 028233 109 YKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNG 151 (211)
Q Consensus 109 ykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDaiDNG 151 (211)
|.+|...+.+-....-.+..+.+.+++.+.-.+.+.++..|.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~eD~~qe~~~~l~~~~~~~~~~ 44 (71)
T PF04542_consen 2 YERYYPLLYRYARRYTGDPEDAEDLVQEAFIKLWRAIDSYDPD 44 (71)
T ss_dssp HHHTHHHHHHHHHTCTTCSSHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHhCCHhhHHHHhhHHHHHHHhhhhccccc
Confidence 5556666554433433455689999999999999999888733
No 19
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=22.93 E-value=34 Score=29.30 Aligned_cols=11 Identities=36% Similarity=0.746 Sum_probs=8.8
Q ss_pred hcccCCCCCCC
Q 028233 173 VGKLNLDWTEP 183 (211)
Q Consensus 173 V~~lNP~W~~~ 183 (211)
=+.+||.||+.
T Consensus 46 ~~n~NPeWNe~ 56 (168)
T KOG1030|consen 46 YKNLNPEWNEE 56 (168)
T ss_pred cCCCCCcccce
Confidence 36799999973
No 20
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=38 Score=30.75 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=55.2
Q ss_pred cCCceEEEccCCCCCCCc-------c---EEEecCCcccCCCCCCCCCCCCccccccCCCcccccchhhhHHHHHHHHHH
Q 028233 49 FFNAQIVRSRDPKVLDDL-------D---AVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIA 118 (211)
Q Consensus 49 y~~a~IvRTRD~~~l~~c-------D---iVvDVGg~YDp~~~rfDHHQr~F~~t~~~~~~~klSSAGLIykhfG~eii~ 118 (211)
..++++.||-.|-+--+. | |--|-.|-|= +.-||--=+|=|.- +.+|.|-..|
T Consensus 26 a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYG-slaR~~nVeRi~kV----gdntllG~sG------------ 88 (256)
T KOG0185|consen 26 AGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYG-SLARYKNVERIFKV----GDNTLLGASG------------ 88 (256)
T ss_pred ccCCCcccccCceeccceEEEEEecCceEEEecccccch-hhhhhcCceeeEEe----cCceEEecCc------------
Confidence 345678888888665443 1 2235555553 34466666655422 2334333333
Q ss_pred HHhCCCCCChhHHHHHHHHHHHHHhhhhh-hccCccccCCCCCCccc---cCCChhhhhcccCCCCCC
Q 028233 119 KELNVDEGHPDVHRLFLAVYKNFMEAIDA-IDNGINQYDTDKPPRYV---NNTNLSSRVGKLNLDWTE 182 (211)
Q Consensus 119 ~~l~~~~~~~~~~~l~~kvy~~fie~IDa-iDNGv~~~~~~~~~~y~---~~~~Ls~rV~~lNP~W~~ 182 (211)
+-.+.+.|-+-+.+.-++ |- .|.|.++ .|++. ..+-|-+|=+.+||-||.
T Consensus 89 -------disD~Q~i~r~L~~l~ie--dn~~~Dg~~l-----~Pk~ih~yltrvlY~rRsKmnPlwnt 142 (256)
T KOG0185|consen 89 -------DISDFQYIQRVLEQLVIE--DNRLDDGQSL-----GPKAIHSYLTRVLYARRSKMNPLWNT 142 (256)
T ss_pred -------cHHHHHHHHHHHHHHHhc--cccccccccc-----ChHHHHHHHHHHHHHhhhccCchhhh
Confidence 334555555555444444 22 3335443 45543 234567888999999985
No 21
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=22.11 E-value=50 Score=25.20 Aligned_cols=47 Identities=23% Similarity=0.160 Sum_probs=23.3
Q ss_pred EEEecCCcc-----c-----CCCCCCCCCCCCcccc-ccC---CCcccccchhhhHHHHHH
Q 028233 68 AVLDVGGVY-----D-----PSNDCYDHHQKGFEEV-FGH---GFSTKLSSAGLVYKHFGK 114 (211)
Q Consensus 68 iVvDVGg~Y-----D-----p~~~rfDHHQr~F~~t-~~~---~~~~klSSAGLIykhfG~ 114 (211)
|+||.|.-- . ...-.+|||+.+-... ... -....-|.+-||++.+-+
T Consensus 67 i~vD~~~~~~~~~~~~~~~~~~viiiDHH~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~~~ 127 (145)
T PF01368_consen 67 ILVDCGSPDRDGEKLEELKGIKVIIIDHHQPGEEDINPNDVNYIDESAGSTSTLVAEMLKE 127 (145)
T ss_dssp EEES-SSGGGSGTTGGGTSCSEEEEEESSSSBSS---SSCEEEEETSSSHHHHHHHHHHHH
T ss_pred EEecCCccccchHHHHhcCCCCEEEeCCCCCCcccCCCCCCCCEeCcHHHHHHHHHHHHHH
Confidence 889997642 1 1122589997653322 111 112334556678766543
No 22
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=21.74 E-value=61 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=32.3
Q ss_pred CCceEEEccCCCCCCCcc----EEEecCCcccCCCCCCCCCCCC-ccccc
Q 028233 50 FNAQIVRSRDPKVLDDLD----AVLDVGGVYDPSNDCYDHHQKG-FEEVF 94 (211)
Q Consensus 50 ~~a~IvRTRD~~~l~~cD----iVvDVGg~YDp~~~rfDHHQr~-F~~t~ 94 (211)
+..++.-+|||+.|...| ||||.-|.|=-..+.--|=..+ -...+
T Consensus 70 ~~I~v~~~~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~ 119 (335)
T COG0057 70 KGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVL 119 (335)
T ss_pred ceEEEEecCChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEE
Confidence 456789999999998876 9999999997555544454442 34443
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=21.67 E-value=70 Score=26.10 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=27.5
Q ss_pred HHHHHHHhccccCCceEEEccCCCCC------CCccEEEecCCcccCCCC
Q 028233 38 LGCFMIRLTDKFFNAQIVRSRDPKVL------DDLDAVLDVGGVYDPSND 81 (211)
Q Consensus 38 LA~~mLr~l~~y~~a~IvRTRD~~~l------~~cDiVvDVGg~YDp~~~ 81 (211)
....|.+.|+..++..|| |-+..+. ..+++++ .||.|+|...
T Consensus 30 T~~~la~~L~~~~~ltVv-Tnsl~ia~~l~~~~~~~vi~-~GG~~~~~~~ 77 (161)
T PF00455_consen 30 TTLELAKYLPDKKNLTVV-TNSLPIANELSENPNIEVIL-LGGEVNPKSL 77 (161)
T ss_pred HHHHHHHHhhcCCceEEE-ECCHHHHHHHHhcCceEEEE-eCCEEEcCCC
Confidence 455677777777766655 5665432 2456666 9998887665
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=20.95 E-value=44 Score=24.91 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=7.0
Q ss_pred ccCCCCCC
Q 028233 175 KLNLDWTE 182 (211)
Q Consensus 175 ~lNP~W~~ 182 (211)
.+||.||+
T Consensus 44 ~~nP~Wne 51 (118)
T cd08681 44 GQHPEWDE 51 (118)
T ss_pred CCCCccCc
Confidence 58999997
No 25
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=20.90 E-value=42 Score=26.37 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=7.2
Q ss_pred ccCCCCCC
Q 028233 175 KLNLDWTE 182 (211)
Q Consensus 175 ~lNP~W~~ 182 (211)
..||.|||
T Consensus 44 ~~nP~WNe 51 (121)
T cd04016 44 AKNPRWNK 51 (121)
T ss_pred CCCCccCe
Confidence 59999998
No 26
>PRK09480 slmA division inhibitor protein; Provisional
Probab=20.58 E-value=79 Score=25.16 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|.||+..
T Consensus 43 s~gt~Y~~F~~K 54 (194)
T PRK09480 43 SEAALYRHFPSK 54 (194)
T ss_pred CHhHHHHHCCCH
Confidence 567899999854
No 27
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=20.24 E-value=46 Score=25.44 Aligned_cols=9 Identities=33% Similarity=0.804 Sum_probs=7.7
Q ss_pred cccCCCCCC
Q 028233 174 GKLNLDWTE 182 (211)
Q Consensus 174 ~~lNP~W~~ 182 (211)
+.+||.|||
T Consensus 42 ~t~nP~Wne 50 (123)
T cd08382 42 KTLDPKWNE 50 (123)
T ss_pred CCCCCcccc
Confidence 468999997
No 28
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=20.06 E-value=43 Score=25.82 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=8.4
Q ss_pred hcccCCCCCC
Q 028233 173 VGKLNLDWTE 182 (211)
Q Consensus 173 V~~lNP~W~~ 182 (211)
.+.+||.|||
T Consensus 41 ~~~~nP~WnE 50 (126)
T cd08400 41 REGPNPVWSE 50 (126)
T ss_pred CCCCCCccCC
Confidence 4569999998
Done!