Query 028233
Match_columns 211
No_of_seqs 123 out of 346
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3j_A Complement C1Q tumor ne 48.5 5.1 0.00017 31.0 0.8 23 67-89 26-48 (148)
2 3loc_A HTH-type transcriptiona 42.8 11 0.00038 28.2 1.9 12 104-115 51-62 (212)
3 1pb6_A Hypothetical transcript 39.5 13 0.00045 27.9 1.9 12 104-115 51-62 (212)
4 2wnv_C C1Q chain C, complement 37.4 9.7 0.00033 28.9 0.8 23 67-89 28-50 (131)
5 3on4_A Transcriptional regulat 35.8 15 0.00051 27.0 1.6 34 104-148 43-76 (191)
6 2wnv_A C1Q chain A, complement 35.4 11 0.00038 28.7 0.8 23 67-89 24-46 (134)
7 2wnv_B C1Q chain B, complement 34.5 12 0.0004 28.7 0.8 23 67-89 27-49 (136)
8 3gzi_A Transcriptional regulat 33.3 21 0.00072 26.9 2.1 12 104-115 50-61 (218)
9 2qtq_A Transcriptional regulat 31.5 27 0.00093 26.0 2.5 12 104-115 49-60 (213)
10 2hyt_A TETR-family transcripti 30.1 29 0.00099 26.2 2.4 12 104-115 45-56 (197)
11 3pas_A TETR family transcripti 29.8 22 0.00074 26.1 1.6 12 104-115 41-52 (195)
12 3frq_A Repressor protein MPHR( 29.5 32 0.0011 25.6 2.6 12 104-115 41-52 (195)
13 2yqk_A Arginine-glutamic acid 28.5 14 0.00048 25.0 0.4 26 176-207 8-33 (63)
14 2gfn_A HTH-type transcriptiona 28.4 26 0.00087 27.0 1.9 12 104-115 42-53 (209)
15 3e7q_A Transcriptional regulat 28.3 23 0.0008 26.3 1.6 12 104-115 47-58 (215)
16 2nx4_A Transcriptional regulat 27.2 25 0.00086 26.5 1.6 12 104-115 43-54 (194)
17 3f0c_A TETR-molecule A, transc 26.9 26 0.00088 26.4 1.6 12 104-115 44-55 (216)
18 3bru_A Regulatory protein, TET 26.7 26 0.00089 26.5 1.6 12 104-115 63-74 (222)
19 2ka3_A Emilin-1; C1Q-like doma 26.6 20 0.00068 28.5 1.0 39 51-89 18-59 (162)
20 2np5_A Transcriptional regulat 25.6 28 0.00095 26.5 1.6 12 104-115 42-53 (203)
21 3bhq_A Transcriptional regulat 25.4 37 0.0013 25.7 2.3 12 104-115 45-56 (211)
22 3jsj_A Putative TETR-family tr 25.4 28 0.00094 25.8 1.5 12 104-115 41-52 (190)
23 3kz9_A SMCR; transcriptional r 25.0 32 0.0011 25.4 1.8 12 104-115 50-61 (206)
24 2gen_A Probable transcriptiona 24.9 31 0.0011 26.0 1.8 12 104-115 40-51 (197)
25 2v57_A TETR family transcripti 24.9 30 0.001 25.5 1.6 12 104-115 45-56 (190)
26 2g7s_A Transcriptional regulat 24.9 30 0.001 25.3 1.6 12 104-115 41-52 (194)
27 3knw_A Putative transcriptiona 24.7 30 0.001 25.8 1.6 12 104-115 47-58 (212)
28 2qwt_A Transcriptional regulat 24.4 31 0.001 26.1 1.6 12 104-115 45-56 (196)
29 1sgm_A Putative HTH-type trans 24.3 42 0.0015 24.4 2.4 12 104-115 39-52 (191)
30 2rek_A Putative TETR-family tr 24.3 31 0.0011 25.8 1.6 12 104-115 48-59 (199)
31 3q0w_A HTH-type transcriptiona 24.0 31 0.0011 26.9 1.6 12 104-115 77-88 (236)
32 3dcf_A Transcriptional regulat 23.9 32 0.0011 25.7 1.6 12 104-115 64-75 (218)
33 3f1b_A TETR-like transcription 23.6 35 0.0012 25.2 1.8 12 104-115 47-58 (203)
34 1j6q_A Cytochrome C maturation 23.6 7.3 0.00025 30.9 -2.1 15 25-39 88-104 (136)
35 2d6y_A Putative TETR family re 23.6 36 0.0012 25.9 1.9 12 104-115 41-52 (202)
36 3lwj_A Putative TETR-family tr 23.5 33 0.0011 25.4 1.7 36 104-150 45-80 (202)
37 1wpn_A Manganese-dependent ino 23.5 76 0.0026 24.7 3.9 66 68-139 72-148 (188)
38 3crj_A Transcription regulator 23.4 26 0.00088 26.7 1.0 12 104-115 47-58 (199)
39 2q24_A Putative TETR family tr 23.3 29 0.001 25.9 1.3 12 104-115 47-58 (194)
40 3g7r_A Putative transcriptiona 23.0 33 0.0011 26.4 1.6 12 104-115 68-79 (221)
41 3rh2_A Hypothetical TETR-like 22.8 34 0.0012 25.9 1.6 12 104-115 36-47 (212)
42 3qbm_A TETR transcriptional re 22.8 25 0.00084 25.9 0.8 12 104-115 40-51 (199)
43 1gr3_A Collagen X; extracellul 22.7 25 0.00084 27.9 0.8 23 67-89 53-75 (160)
44 3kkd_A Transcriptional regulat 22.4 37 0.0013 26.3 1.8 12 104-115 68-79 (237)
45 3qkx_A Uncharacterized HTH-typ 22.4 38 0.0013 24.6 1.8 12 104-115 41-52 (188)
46 2hku_A A putative transcriptio 22.3 48 0.0016 25.1 2.4 12 104-115 52-63 (215)
47 3dpj_A Transcription regulator 22.0 37 0.0013 25.1 1.6 12 104-115 41-52 (194)
48 3eup_A Transcriptional regulat 21.7 24 0.00083 26.1 0.5 12 104-115 44-55 (204)
49 3bqz_B HTH-type transcriptiona 21.5 42 0.0014 24.6 1.9 12 104-115 35-46 (194)
50 3b81_A Transcriptional regulat 21.5 29 0.00099 25.7 1.0 33 104-147 44-76 (203)
51 3rd3_A Probable transcriptiona 21.1 24 0.00082 26.0 0.4 12 104-115 43-54 (197)
52 2fd5_A Transcriptional regulat 20.9 33 0.0011 25.2 1.2 12 104-115 40-51 (180)
53 2o7t_A Transcriptional regulat 20.9 40 0.0014 25.3 1.6 12 104-115 41-52 (199)
54 1k20_A Manganese-dependent ino 20.5 1.1E+02 0.0038 26.1 4.6 47 68-114 73-130 (310)
55 3g1o_A Transcriptional regulat 20.5 40 0.0014 26.6 1.6 12 104-115 76-87 (255)
56 3bni_A Putative TETR-family tr 20.5 40 0.0014 26.2 1.6 12 104-115 76-87 (229)
57 2g3b_A Putative TETR-family tr 20.4 50 0.0017 25.2 2.2 12 104-115 36-47 (208)
58 3npi_A TETR family regulatory 20.2 37 0.0013 26.7 1.4 12 104-115 51-62 (251)
59 2ibd_A Possible transcriptiona 20.2 40 0.0014 25.4 1.6 12 104-115 47-58 (204)
No 1
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=48.51 E-value=5.1 Score=31.01 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.9
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 028233 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 67 DiVvDVGg~YDp~~~rfDHHQr~ 89 (211)
.+++|+|+-||+++++|==--.|
T Consensus 26 ~v~~N~G~~yn~sTG~FTaPv~G 48 (148)
T 4f3j_A 26 RVLVNEQGHYDAVTGKFTCQVPG 48 (148)
T ss_dssp EEEECTTCCEETTTTEEECCSCE
T ss_pred eEEECCCCCccCCCCeEECCcce
Confidence 48899999999999988665544
No 2
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=42.84 E-value=11 Score=28.22 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 51 s~~tlY~~F~sK 62 (212)
T 3loc_A 51 SKTNLLYYFPSK 62 (212)
T ss_dssp CHHHHHHHSSSH
T ss_pred CHHHHhhhCCCH
Confidence 568999999854
No 3
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=39.47 E-value=13 Score=27.89 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=9.7
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 51 s~~t~Y~~F~sK 62 (212)
T 1pb6_A 51 SKTNLLYYFPSK 62 (212)
T ss_dssp CHHHHHHHSSSH
T ss_pred ChhHHHHhCCCH
Confidence 668999999754
No 4
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=37.36 E-value=9.7 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.6
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 028233 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 67 DiVvDVGg~YDp~~~rfDHHQr~ 89 (211)
.+++++|+.|||++++|==...|
T Consensus 28 ~v~~N~G~~yn~~TG~Ftap~~G 50 (131)
T 2wnv_C 28 AVLTNPQGDYDTSTGKFTCKVPG 50 (131)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred eEEECCCCCccCCCCEEEcccCC
Confidence 48999999999999988766655
No 5
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=35.85 E-value=15 Score=26.98 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=19.6
Q ss_pred chhhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhhh
Q 028233 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (211)
Q Consensus 104 SAGLIykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDai 148 (211)
|-|.+|+||+.. ++.+..++..+.+.+.+.++..
T Consensus 43 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~ 76 (191)
T 3on4_A 43 KTASIHYHFPSK-----------EDLGVAVISWHTDKIAAVLSDI 76 (191)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhcCCCH-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 568999999865 1223444455555555555443
No 6
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=35.42 E-value=11 Score=28.68 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=19.5
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 028233 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 67 DiVvDVGg~YDp~~~rfDHHQr~ 89 (211)
.+++++|+.|||++++|==.-.|
T Consensus 24 ~v~~N~G~~yn~~TG~Ftap~~G 46 (134)
T 2wnv_A 24 TVITNQEEPYQNHSGRFVCTVPG 46 (134)
T ss_dssp EEEEEETSCEETTTTEEECCSCE
T ss_pred EEEECCCCCccCCCCEEECeeCC
Confidence 48999999999999988766655
No 7
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=34.55 E-value=12 Score=28.74 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=19.5
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 028233 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 67 DiVvDVGg~YDp~~~rfDHHQr~ 89 (211)
.+++++|+.|||++++|==...|
T Consensus 27 ~v~~N~G~~yn~~TG~Ftap~~G 49 (136)
T 2wnv_B 27 HVITNMNNNYEPRSGKFTCKVPG 49 (136)
T ss_dssp EEEEEETSCEETTTTEEECSSCE
T ss_pred eEEECCCCcccCCCCEEECCcCe
Confidence 48999999999999988766655
No 8
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=33.35 E-value=21 Score=26.95 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 50 s~~t~Y~~F~sK 61 (218)
T 3gzi_A 50 DPGLIRYYFGSK 61 (218)
T ss_dssp CTHHHHHHHSSH
T ss_pred CHHHHHHHcCCH
Confidence 668999999744
No 9
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.52 E-value=27 Score=26.03 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 49 s~~t~Y~~F~sK 60 (213)
T 2qtq_A 49 NSALVKYYFGNK 60 (213)
T ss_dssp CHHHHHHHHSSH
T ss_pred ChhhHhHhcCCH
Confidence 567899999864
No 10
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=30.08 E-value=29 Score=26.16 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|.||+..
T Consensus 45 s~~tlY~~F~sK 56 (197)
T 2hyt_A 45 TRGALYHHFGDK 56 (197)
T ss_dssp CTTHHHHHHSSH
T ss_pred CHHHHHHHcCCH
Confidence 568899999854
No 11
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=29.81 E-value=22 Score=26.09 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 41 s~~t~Y~~F~sK 52 (195)
T 3pas_A 41 SPATLYIYYEDK 52 (195)
T ss_dssp CHHHHHHHCSSH
T ss_pred CchHHHHHcCCH
Confidence 568899999864
No 12
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=29.50 E-value=32 Score=25.63 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 41 s~~t~Y~~F~sK 52 (195)
T 3frq_A 41 SRAALIQRFTNR 52 (195)
T ss_dssp CHHHHHHHHCSH
T ss_pred CHHHHHHHcCCH
Confidence 568899999854
No 13
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.55 E-value=14 Score=24.99 Aligned_cols=26 Identities=35% Similarity=0.668 Sum_probs=20.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 028233 176 LNLDWTEPDQSAERENEAFQQGMDLAGKEFLD 207 (211)
Q Consensus 176 lNP~W~~~~~~~~~~d~~F~~A~~~~~~ef~~ 207 (211)
..+.|.+ ++.+.|++|+..-|.+|..
T Consensus 8 ~~~~WT~------eE~~~Fe~~l~~yGKdf~~ 33 (63)
T 2yqk_A 8 IEKCWTE------DEVKRFVKGLRQYGKNFFR 33 (63)
T ss_dssp CCCSCCH------HHHHHHHHHHHHTCSCHHH
T ss_pred CCCCcCH------HHHHHHHHHHHHhCccHHH
Confidence 4467855 5679999999998888754
No 14
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.37 E-value=26 Score=26.98 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.8
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||.||+..
T Consensus 42 s~gtlY~yF~sK 53 (209)
T 2gfn_A 42 STGVLNHYFGSR 53 (209)
T ss_dssp CHHHHHHHTSSH
T ss_pred CcchHHhcCCCH
Confidence 678999999854
No 15
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=28.28 E-value=23 Score=26.34 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+|||..
T Consensus 47 s~~t~Y~~F~sK 58 (215)
T 3e7q_A 47 SVGLINHHYDGK 58 (215)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 567899998855
No 16
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=27.19 E-value=25 Score=26.51 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||.||+..
T Consensus 43 s~gtlY~yF~sK 54 (194)
T 2nx4_A 43 TNGALSHYFAGK 54 (194)
T ss_dssp CHHHHHHHCSSH
T ss_pred CcchHHHhCcCH
Confidence 568999999754
No 17
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=26.92 E-value=26 Score=26.39 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 44 s~~t~Y~~F~sK 55 (216)
T 3f0c_A 44 GKASLYYYFPDK 55 (216)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 568999999854
No 18
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.69 E-value=26 Score=26.49 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 63 s~~t~Y~~F~sK 74 (222)
T 3bru_A 63 PKGSFYHYFRNK 74 (222)
T ss_dssp CHHHHHHHCSSH
T ss_pred CcchhhhhCCCH
Confidence 567899999754
No 19
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=26.63 E-value=20 Score=28.46 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred CceEEEccCCC---CCCCccEEEecCCcccCCCCCCCCCCCC
Q 028233 51 NAQIVRSRDPK---VLDDLDAVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 51 ~a~IvRTRD~~---~l~~cDiVvDVGg~YDp~~~rfDHHQr~ 89 (211)
...+.||.... .|.=-.+++++|+-|||++++|==--.|
T Consensus 18 AFSv~rt~~~~~~~~I~Fd~v~~N~G~~yn~~TG~FTaPv~G 59 (162)
T 2ka3_A 18 AFSAALSLPRSEPGTVPFDRVLLNDGGYYDPETGVFTAPLAG 59 (162)
T ss_dssp EEEEECCCCSCCSSSCCCCEEEEESSCCEETTTTEEECCCCE
T ss_pred EEEEEeCCCCCCCCeEEeCEEEECCCCceECCCCEEECCCCe
Confidence 34556655432 3332348999999999999988765554
No 20
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.55 E-value=28 Score=26.46 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 42 s~gtlY~~F~sK 53 (203)
T 2np5_A 42 SIGAVQHHFSTK 53 (203)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 668999999754
No 21
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=25.37 E-value=37 Score=25.74 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 45 sk~tlY~~F~sK 56 (211)
T 3bhq_A 45 SKQTVYKHFTDK 56 (211)
T ss_dssp CHHHHHHHHCSH
T ss_pred CHHHHHHHcCCH
Confidence 568999999843
No 22
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=25.37 E-value=28 Score=25.79 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 41 s~~tly~~F~sK 52 (190)
T 3jsj_A 41 SKRSMYQLFESK 52 (190)
T ss_dssp CHHHHHHHCSCH
T ss_pred CHHHHHHHcCCH
Confidence 568999999854
No 23
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.97 E-value=32 Score=25.36 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 50 s~~t~Y~~F~sK 61 (206)
T 3kz9_A 50 SVATVFNYFPTR 61 (206)
T ss_dssp CHHHHHHHCCSH
T ss_pred CHHHHHHHcCCH
Confidence 567899999864
No 24
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=24.94 E-value=31 Score=26.02 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 40 s~gtlY~~F~sK 51 (197)
T 2gen_A 40 SIGSLYHHFGNK 51 (197)
T ss_dssp CHHHHHHHTCSH
T ss_pred ChHHHHHHCCCH
Confidence 567899999754
No 25
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.89 E-value=30 Score=25.52 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 45 s~~t~Y~~F~sK 56 (190)
T 2v57_A 45 GRSTVHRYYPER 56 (190)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 567899999864
No 26
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.87 E-value=30 Score=25.26 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=9.7
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 41 s~~t~Y~~F~sK 52 (194)
T 2g7s_A 41 RNASIHHHFPSK 52 (194)
T ss_dssp CHHHHHHHCSSH
T ss_pred CchHHHHHcCCH
Confidence 668999999864
No 27
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=24.69 E-value=30 Score=25.83 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 47 s~~t~Y~~F~sK 58 (212)
T 3knw_A 47 PKGSFYHYFESK 58 (212)
T ss_dssp CHHHHHHHCSSH
T ss_pred ChHHHHHHCCCH
Confidence 568999999854
No 28
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.35 E-value=31 Score=26.07 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=9.7
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 45 s~~tlY~~F~sK 56 (196)
T 2qwt_A 45 GAGTVYRHFPTK 56 (196)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHCCCH
Confidence 578999999754
No 29
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.28 E-value=42 Score=24.42 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=9.7
Q ss_pred chhhhHHHHH--HH
Q 028233 104 SAGLVYKHFG--KE 115 (211)
Q Consensus 104 SAGLIykhfG--~e 115 (211)
|-|.+|+||+ |+
T Consensus 39 s~~t~Y~~F~~sK~ 52 (191)
T 1sgm_A 39 PKGSLYHFFPNGKE 52 (191)
T ss_dssp CSCHHHHSTTTCHH
T ss_pred CchhHHHHccccHH
Confidence 5689999997 55
No 30
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=24.26 E-value=31 Score=25.80 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=9.3
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 48 s~~t~Y~~F~sK 59 (199)
T 2rek_A 48 GSATLHRHFPSR 59 (199)
T ss_dssp CHHHHHHHCSSH
T ss_pred chHHHHHHCCCH
Confidence 568899999843
No 31
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=24.02 E-value=31 Score=26.90 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 77 s~~tlY~~F~sK 88 (236)
T 3q0w_A 77 SRPTFYFYFPSK 88 (236)
T ss_dssp CHHHHHHHCSSH
T ss_pred cHHHHHHHCCCH
Confidence 567899999854
No 32
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.91 E-value=32 Score=25.74 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=9.3
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 64 s~~t~Y~~F~sK 75 (218)
T 3dcf_A 64 TKPAIYYYFKSK 75 (218)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 567899999844
No 33
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=23.65 E-value=35 Score=25.19 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.3
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 47 s~~t~Y~~F~sK 58 (203)
T 3f1b_A 47 SKPMLYLYYGSK 58 (203)
T ss_dssp CHHHHHHHCCSH
T ss_pred chHHHHHHhCCH
Confidence 567899999754
No 34
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=23.64 E-value=7.3 Score=30.91 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=11.7
Q ss_pred EEec--CCCcchhHHHH
Q 028233 25 VGTH--NGSFHCDEALG 39 (211)
Q Consensus 25 IgTH--~G~FHaDEvLA 39 (211)
.|+= +|.|||+||||
T Consensus 88 ~G~l~~~g~F~A~eVLa 104 (136)
T 1j6q_A 88 QGVLGEDGKLAATEVLA 104 (136)
T ss_dssp EEEECSTTSEEEEEEEC
T ss_pred EEEECCCCeEEEEEEEe
Confidence 4543 69999999986
No 35
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.62 E-value=36 Score=25.90 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 41 s~~tiY~~F~sK 52 (202)
T 2d6y_A 41 NKQLIYAYYGNK 52 (202)
T ss_dssp CHHHHHHHHSSH
T ss_pred CHHHHHHHcCCH
Confidence 568999999844
No 36
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=23.54 E-value=33 Score=25.42 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=20.0
Q ss_pred chhhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhhhcc
Q 028233 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDN 150 (211)
Q Consensus 104 SAGLIykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDaiDN 150 (211)
|-|.+|+||+.. ++.+..++....+.+.+.+.....
T Consensus 45 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~~~ 80 (202)
T 3lwj_A 45 GTGTFYNYFVDK-----------EDILKNLLEDFAKQIISSISEYYL 80 (202)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999865 122344444455555555544433
No 37
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=23.50 E-value=76 Score=24.71 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=36.0
Q ss_pred EEEecCCc------ccC--CCCCCCCCCCCccccccCC--Ccccc-cchhhhHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 028233 68 AVLDVGGV------YDP--SNDCYDHHQKGFEEVFGHG--FSTKL-SSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLA 136 (211)
Q Consensus 68 iVvDVGg~------YDp--~~~rfDHHQr~F~~t~~~~--~~~kl-SSAGLIykhfG~eii~~~l~~~~~~~~~~~l~~k 136 (211)
|+||.|.. ++- .....|||+.+=...+..- ...+. |.+.|||+.+- + ++.+++.+....+|.-
T Consensus 72 i~VD~~~~~r~~~~~~~~~~vivIDHH~~~~~~~~~~~~~~~~~~~St~~lv~~~~~-----~-~~~~i~~~~A~~l~~g 145 (188)
T 1wpn_A 72 ILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYK-----E-NNVKIEKEIAGLMLSA 145 (188)
T ss_dssp EEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHH-----H-TTCCCCHHHHHHHHHH
T ss_pred EEEeCCCcccchhhhccCCeEEEECCCCCCCCCCCCCeEEEeccccHHHHHHHHHHH-----H-cCCCCCHHHHHHHHHH
Confidence 88999852 211 1124999997421111210 01123 55668887653 2 4666676666777776
Q ss_pred HHH
Q 028233 137 VYK 139 (211)
Q Consensus 137 vy~ 139 (211)
|+.
T Consensus 146 I~~ 148 (188)
T 1wpn_A 146 IIS 148 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 38
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.41 E-value=26 Score=26.66 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=9.0
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||.||+..
T Consensus 47 sk~tlY~yF~sK 58 (199)
T 3crj_A 47 STAAVHYYYDTK 58 (199)
T ss_dssp CHHHHHTTCSSH
T ss_pred ChhHHhhhcCCH
Confidence 567899999743
No 39
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.32 E-value=29 Score=25.88 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 47 s~~tlY~~F~sK 58 (194)
T 2q24_A 47 GSGTLYRNFPTR 58 (194)
T ss_dssp CHHHHHHHCCSH
T ss_pred ChHHHHHHcCCH
Confidence 568899999854
No 40
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=22.97 E-value=33 Score=26.39 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 68 s~~tlY~~F~sK 79 (221)
T 3g7r_A 68 TRATLYRHFSGK 79 (221)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHCCCH
Confidence 568999999854
No 41
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=22.83 E-value=34 Score=25.86 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 36 s~~t~Y~~F~sK 47 (212)
T 3rh2_A 36 SPGNLYYHFRNK 47 (212)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHCCCH
Confidence 567899999754
No 42
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=22.77 E-value=25 Score=25.94 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 40 s~~t~Y~~F~sK 51 (199)
T 3qbm_A 40 EKGGIYRHFESK 51 (199)
T ss_dssp CHHHHHTTCSSH
T ss_pred CccHHHHhCCCH
Confidence 568899999755
No 43
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=22.67 E-value=25 Score=27.90 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.4
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 028233 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (211)
Q Consensus 67 DiVvDVGg~YDp~~~rfDHHQr~ 89 (211)
.+++++|+.|||++++|==.-.|
T Consensus 53 ~v~~N~Gn~yn~~TG~FtaPv~G 75 (160)
T 1gr3_A 53 KILYNRQQHYDPRTGIFTCQIPG 75 (160)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred EEEECCCCceeCCCCEEEcccCC
Confidence 48899999999999988766555
No 44
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=22.44 E-value=37 Score=26.30 Aligned_cols=12 Identities=8% Similarity=-0.111 Sum_probs=4.8
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+|||..
T Consensus 68 s~~tlY~~F~sK 79 (237)
T 3kkd_A 68 PLSATTYYFKDI 79 (237)
T ss_dssp CTTTC-----CH
T ss_pred ChhHHHHHcCCH
Confidence 567899999855
No 45
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=22.35 E-value=38 Score=24.63 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 41 s~~t~Y~~F~sK 52 (188)
T 3qkx_A 41 AAGTIYLYFKNK 52 (188)
T ss_dssp CHHHHHHHSSSH
T ss_pred CcchHHHHcCCH
Confidence 567899999854
No 46
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.28 E-value=48 Score=25.12 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||.||+..
T Consensus 52 s~~tlY~~F~sK 63 (215)
T 2hku_A 52 HPNQVTYYYGSK 63 (215)
T ss_dssp CHHHHHHHHSSH
T ss_pred CHHHHHHHcCCH
Confidence 567899999854
No 47
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.01 E-value=37 Score=25.10 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+|||..
T Consensus 41 s~~tly~~F~sK 52 (194)
T 3dpj_A 41 SRGNFYYHFKTK 52 (194)
T ss_dssp CHHHHHHHCSSH
T ss_pred ChHHHHHHcCCH
Confidence 568899999844
No 48
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=21.68 E-value=24 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=8.9
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 44 s~~t~Y~~F~sK 55 (204)
T 3eup_A 44 TKGSIYGNFENK 55 (204)
T ss_dssp CHHHHTTTSSSH
T ss_pred CcHHHHHhCCCH
Confidence 567888888754
No 49
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=21.51 E-value=42 Score=24.58 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 35 s~~t~Y~~F~sK 46 (194)
T 3bqz_B 35 SKGNLYYHFKTK 46 (194)
T ss_dssp CHHHHHHHTSSH
T ss_pred CchhHHHhCCCH
Confidence 567899999854
No 50
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=21.50 E-value=29 Score=25.73 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=19.4
Q ss_pred chhhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHhhhhh
Q 028233 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 147 (211)
Q Consensus 104 SAGLIykhfG~eii~~~l~~~~~~~~~~~l~~kvy~~fie~IDa 147 (211)
|-|.+|+||+.. ++.+..++....+.+.+.++.
T Consensus 44 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~ 76 (203)
T 3b81_A 44 SKGALYHYFSSK-----------EECADAAIENRVAFFSNEVLK 76 (203)
T ss_dssp CHHHHHTTCSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 567899998865 123444455555555555544
No 51
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=21.08 E-value=24 Score=25.97 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.2
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 43 s~~tlY~~F~sK 54 (197)
T 3rd3_A 43 PKGSFYHYFKSK 54 (197)
T ss_dssp CHHHHTTTCSCH
T ss_pred ChhhHHHHcCCH
Confidence 567899998844
No 52
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=20.94 E-value=33 Score=25.17 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.2
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+|||..
T Consensus 40 s~~tly~~F~sK 51 (180)
T 2fd5_A 40 TVGGFYAHFQSK 51 (180)
T ss_dssp CGGGGGGTCSCH
T ss_pred CccHHHHHCCCH
Confidence 567899998754
No 53
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.90 E-value=40 Score=25.26 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 41 s~~tlY~~F~sK 52 (199)
T 2o7t_A 41 GVATLYRNFPDR 52 (199)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 567899999854
No 54
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Probab=20.53 E-value=1.1e+02 Score=26.06 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=24.4
Q ss_pred EEEecCCc------ccC--CCCCCCCCCCCccccccCC--Ccccc-cchhhhHHHHHH
Q 028233 68 AVLDVGGV------YDP--SNDCYDHHQKGFEEVFGHG--FSTKL-SSAGLVYKHFGK 114 (211)
Q Consensus 68 iVvDVGg~------YDp--~~~rfDHHQr~F~~t~~~~--~~~kl-SSAGLIykhfG~ 114 (211)
|+||.+.. ++. ....+|||..+=..+..+. +.-+. |++-|||..|-.
T Consensus 73 ilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~~~~~~~~~~~i~p~gSt~tiv~~~~~~ 130 (310)
T 1k20_A 73 ILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKE 130 (310)
T ss_dssp EEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHH
T ss_pred EEEcCCCcccccccccccCEEEEECCCcCCCcCCCCCcEEEEEEccHHHHHHHHHHHH
Confidence 88998632 321 1347999997611111110 11123 445688877643
No 55
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=20.48 E-value=40 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|+||+..
T Consensus 76 s~~tlY~~F~sK 87 (255)
T 3g1o_A 76 SRPTFYFYFPSK 87 (255)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 567899999854
No 56
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.47 E-value=40 Score=26.15 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=9.4
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|.||+..
T Consensus 76 s~~t~Y~~F~sK 87 (229)
T 3bni_A 76 PIGSVYRFFGNK 87 (229)
T ss_dssp CHHHHHHHCSSH
T ss_pred CchhHHHHcCCH
Confidence 567899999854
No 57
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.39 E-value=50 Score=25.22 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=9.5
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|.||+..
T Consensus 36 skgtlY~hF~sK 47 (208)
T 2g3b_A 36 SPGLLYYHFKDR 47 (208)
T ss_dssp CHHHHHHHHCSH
T ss_pred CHHHHHHHCCCH
Confidence 568999999854
No 58
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=20.24 E-value=37 Score=26.71 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.6
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.||+||+..
T Consensus 51 s~~tlY~~F~sK 62 (251)
T 3npi_A 51 SKRMIHYHFGDK 62 (251)
T ss_dssp CHHHHHHHHCSH
T ss_pred CHHHHHHHcCCH
Confidence 568999999844
No 59
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.21 E-value=40 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.3
Q ss_pred chhhhHHHHHHH
Q 028233 104 SAGLVYKHFGKE 115 (211)
Q Consensus 104 SAGLIykhfG~e 115 (211)
|-|.+|.||+..
T Consensus 47 s~~tlY~~F~sK 58 (204)
T 2ibd_A 47 LSGSLYHHFDSK 58 (204)
T ss_dssp CHHHHHHHCSCH
T ss_pred CchhHHHhcCCH
Confidence 568999999843
Done!