BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028234
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 87/123 (70%)
Query: 82 CEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG 141
CEFS + SGL +CD G G EA G+LI HY + +G +FDSSY R +PLT RIGVG
Sbjct: 5 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 64
Query: 142 KVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDIN 201
+VIKG DQGILG DG+PPM GGKR L+IPPELAYG AGC G C IP + L++DI
Sbjct: 65 EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIE 124
Query: 202 FVG 204
++G
Sbjct: 125 YIG 127
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 87 ARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161
Query: 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 162 WDEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 87 ARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161
Query: 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 162 WDEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 209
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 87 ARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKG 161
Query: 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 162 WDEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 88 RSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 7 ESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGW 66
Query: 148 DQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 67 DEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 113
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 88 RSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 11 ESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 70
Query: 148 DQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 71 DEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 117
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 88 RSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 27 ESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 86
Query: 148 DQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 87 DEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 133
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 87 ARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161
Query: 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG A IP NATLV+++ + +
Sbjct: 162 WDEGVQG------MKVGGVRRLTIPPQLGYGARGAAGV-----IPPNATLVFEVELLDV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 87 ARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146
SGL Y D+ GSG EA G+ ++VHYT DG F SS R P +G G VIKG
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKG 161
Query: 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 162 WDEGVQG------MKVGGVRRLTIPPQLGYGARGAGGV-----IPPNATLVFEVELLDV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 87 ARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146
SGL Y D+ GSG EA G+ ++VHYT DG FDSS R P +G G VIKG
Sbjct: 6 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 65
Query: 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+G+ G M VGG R+L IPP+L YG AG IP NATLV+++ + +
Sbjct: 66 WDEGVQG------MKVGGVRRLTIPPQLGYGAGGAGGV-----IPPNATLVFEVELLDV 113
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 11/107 (10%)
Query: 99 GSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVP 158
GS +++ G+++++HYT + DG FDSS + +P +G G+VIKG DQG+LG
Sbjct: 1 GSPIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLG----- 55
Query: 159 PMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
M G KRKL IP EL YG A IP ATLV+++ + I
Sbjct: 56 -MCEGEKRKLVIPSELGYGERGA-----PPKIPGGATLVFEVELLKI 96
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+L+ +HYT +G FDSS R P IGVG+VIKG D GI
Sbjct: 13 ISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGI--- 69
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
P + VG K +L IP AYGP F G IP N+TLV+D+ + +
Sbjct: 70 ---PKLSVGEKARLTIPGPYAYGPR---GFPG--LIPPNSTLVFDVELLKV 112
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 107 GELINVHYTARFADGIIFDSS-------YKRARPLTMRIGVGKVIKGLDQGILGGDGVPP 159
G++++ YT DG +FD++ K A+PL+ ++GVGKVI+G D+ +L
Sbjct: 20 GDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALL------T 73
Query: 160 MHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
M G K +L+I PE AYG + D IP NA L +++ V I
Sbjct: 74 MSKGEKARLEIEPEWAYGKKG----QPDAKIPPNAKLTFEVELVDI 115
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
+ G GV P G+ + VHY RF DG FDSS R +P +G G+VIKG DQ
Sbjct: 31 LTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQ----- 85
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
GV M +G K IP +LAYG IP ATLV+++ + +
Sbjct: 86 -GVATMTLGEKALFTIPYQLAYGER-----GYPPVIPPKATLVFEVELLAV 130
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 107 GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKR 166
G+ + VHYT DG FDSS R ++G G+VIKG DQGI M G
Sbjct: 30 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGI------KTMKKGENA 83
Query: 167 KLQIPPELAYGPEPAGCFSGD-CNIPANATLVYDINFVGIYS 207
IPPELAYG SG IPANATL +D+ + S
Sbjct: 84 LFTIPPELAYGE------SGSPPTIPANATLQFDVELLSWTS 119
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIF-DSSYKRARPLTMRIGVGKVIKGLDQGILG 153
+ G E P G ++ V T + DG +F + P + VI+GLD+ +L
Sbjct: 251 LKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLN 310
Query: 154 GDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G + IPPE AYG + D +P N+T++Y++ V
Sbjct: 311 ------MKKGEVALVTIPPEYAYGSTES---KQDAIVPPNSTVIYEVELV 351
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 107 GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKR 166
G+ + VHYT DG FDSS R ++G G+VIKG DQGI M G
Sbjct: 46 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGI------KTMKKGENA 99
Query: 167 KLQIPPELAYGPEPAGCFSGD-CNIPANATLVYDINFVGIYS 207
IPPELAYG SG IPANATL +D+ + S
Sbjct: 100 LFTIPPELAYGE------SGSPPTIPANATLQFDVELLSWTS 135
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIF-DSSYKRARPLTMRIGVGKVIKGLDQGILG 153
+ G E P G ++ V T + DG +F + P + VI+GLD+ +L
Sbjct: 267 LKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLN 326
Query: 154 GDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G + IPPE AYG + D +P N+T++Y++ V
Sbjct: 327 ------MKKGEVALVTIPPEYAYGSTES---KQDAIVPPNSTVIYEVELV 367
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 107 GELINVHYTARFADGIIFDSS-------YKRARPLTMRIGVGKVIKGLDQGILGGDGVPP 159
G++++ YT DG +FD++ K A+PL+ ++GVGKVI+G D+ +L
Sbjct: 23 GDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLT------ 76
Query: 160 MHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
M G K +L+I PE AYG + D IP N L++++ V I
Sbjct: 77 MSKGEKARLEIEPEWAYGKK----GQPDAKIPPNTKLIFEVELVDI 118
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 91 LGYCDIASGSGVEAPY---GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
+G + +G EA Y G++ VHYT ADG +FDSS R +P +G G+VI+G
Sbjct: 1 MGVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGW 60
Query: 148 DQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
D+ GV M VG + KL P+ AYG IP NATL +D+ + +
Sbjct: 61 DE------GVAQMSVGQRAKLVCSPDYAYGSR-----GHPGVIPPNATLTFDVELLRV 107
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 89 SGLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
SGL + IA GSG AP + VHYT R DG +FDSS +R +P T R +VIKG
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 148 DQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIYS 207
+ + M G + +L IP +LAY G G IP + L +D+ + I
Sbjct: 95 TEAL------QLMREGDRWRLFIPYDLAY-----GVTGGGGMIPPYSPLEFDVELISIKD 143
Query: 208 GNR 210
G +
Sbjct: 144 GGK 146
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 107 GELINVHYTARF-ADGIIFDSSYKR--ARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVG 163
G+L+ VHY DG +F S++K +P+ +G+ + +KG DQG+ G M VG
Sbjct: 32 GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKG------MCVG 85
Query: 164 GKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIYSG 208
KRKL IPP L YG E G IP +TL+++I+ + I +G
Sbjct: 86 EKRKLIIPPALGYGKE------GKGKIPPESTLIFNIDLLEIRNG 124
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG FDSS R +P +G +VI+GL+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 E------GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+ VHYT +G FDSS R +P RIG +VIKG +
Sbjct: 7 ISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE------ 60
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+G M +G + KL P++AYG A G IP NATL++D+ + +
Sbjct: 61 EGAAQMSLGQRAKLTCTPDVAYG---ATGHPG--VIPPNATLIFDVELLNL 106
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG FDSS R +P +G +VI+G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP NATL++D+ + +
Sbjct: 61 E------GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPNATLIFDVELLKL 106
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 89 SGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
SGL Y I SG+GV+ + + V YT R DG +FDS+ K +P T + V +VI G
Sbjct: 106 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQ--VSQVIPGWT 163
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ + M G ++ +P LAYGP G I N TL++ I+ + +
Sbjct: 164 EAL------QLMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLISV 209
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 89 SGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
SGL Y I SG+GV+ + + V YT R DG +FDS+ K +P T + V +VI G
Sbjct: 30 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQ--VSQVIPGWT 87
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ + M G ++ +P LAYGP G G N TL++ I+ + +
Sbjct: 88 EALQ------LMPAGSTWEIYVPSGLAYGPRSVGGPIG-----PNETLIFKIHLISV 133
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG FDSS R +P +G +VI+G +
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 63 E------GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 108
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+ VHYT DG FDSS R +P +G +VI+G ++
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE----- 61
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 62 -GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG FDSS R +P +G +VI+G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 E------GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+ VHYT DG FDSS R +P +G +VI+G ++
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE----- 61
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 62 -GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G+G E P G+ + VHY + ++G FDSS+ R P +G G+VIK D GV
Sbjct: 41 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI------GV 94
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G L PE AYG AG IP+NATL ++I +
Sbjct: 95 ATMKRGEICHLLCKPEYAYG--SAGSLP---KIPSNATLFFEIELL 135
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+ VHYT DG FDSS R +P +G +VI+G ++
Sbjct: 7 ISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE----- 61
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 62 -GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G+G E P G+ + VHY + ++G FDSS+ R P +G G+VIK D GV
Sbjct: 45 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI------GV 98
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G L PE AYG AG IP+NATL ++I +
Sbjct: 99 ATMKKGEICHLLCKPEYAYG--SAGSLP---KIPSNATLFFEIELL 139
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G+G E P G+ + VHY + ++G FDSS+ R P +G G+VIK D GV
Sbjct: 45 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI------GV 98
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G L PE AYG AG IP+NATL ++I +
Sbjct: 99 ATMKKGEICHLLCKPEYAYG--SAGSLP---KIPSNATLFFEIELL 139
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G G E P G+ + VHY + A+G FDSS+ R P IG G+VIK D GV
Sbjct: 41 GHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDI------GV 94
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDC-NIPANATLVYDINFV 203
M G L PE AYG +G IP+NATL +++ +
Sbjct: 95 ATMKKGEICHLLCKPEYAYGA------TGSLPKIPSNATLFFEVELL 135
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G+G E P G+ + VHY + ++G FDSS+ R P +G G+VIK D GV
Sbjct: 45 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI------GV 98
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G L PE AYG AG IP+NATL ++I +
Sbjct: 99 ATMKKGEICHLLCKPEYAYG--SAGSLP---KIPSNATLFFEIELL 139
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+ VHYT DG FDSS R +P +G +VI+G
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ------ 60
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G+G E P G+ + VHY + ++G FDSS+ R P +G G+VIK D GV
Sbjct: 29 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI------GV 82
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G L PE AYG AG IP+NATL ++I +
Sbjct: 83 ATMKKGEICHLLCKPEYAYG--SAGSLP---KIPSNATLFFEIELL 123
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 99 GSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157
G+G E P G+ + VHY + ++G FDSS+ R P +G G+VIK D GV
Sbjct: 29 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDI------GV 82
Query: 158 PPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
M G L PE AYG AG IP+NATL ++I +
Sbjct: 83 ATMKKGEICHLLCKPEYAYG--SAGSLP---KIPSNATLFFEIELL 123
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 96 IASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGG 154
I+ G G P G+ VHYT DG FDSS R +P +G +VI+G
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW------A 60
Query: 155 DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG FDSS + +P +G +VI+G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 E------GVAQMSVGQRAKLTISPDYAYG---ATGVPG--IIPPHATLVFDVELLKL 106
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG DSS R +P +G +VI+G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 E------GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 90 GLGYCDIASGSGVEAP-YGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ I+ G G P G+ VHYT DG DSS R +P +G +VI+G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ GV M VG + KL I P+ AYG A G IP +ATLV+D+ + +
Sbjct: 61 E------GVAQMSVGQRAKLTISPDYAYG---ATGHPG--IIPPHATLVFDVELLKL 106
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 98 SGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDG 156
G+G E P G+ + VHYT DG FDSS R + +G G+VIK D
Sbjct: 39 EGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI------A 92
Query: 157 VPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINF 202
V M VG ++ PE AYG AG IP NATLV+++
Sbjct: 93 VATMKVGELCRITCKPEYAYG--SAGSPP---KIPPNATLVFEVEL 133
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 98 SGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDG 156
G+G E P G+ + VHYT DG FDSS R + +G G+VIK D I
Sbjct: 40 EGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAI----- 94
Query: 157 VPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINF 202
M VG + PE AYG AG IP NATLV+++
Sbjct: 95 -ATMKVGEVCHITCKPEYAYG--SAGS---PPKIPPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 98 SGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDG 156
G+G E P G+ + VHYT DG FDSS R + +G G+VIK D I
Sbjct: 44 EGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAI----- 98
Query: 157 VPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINF 202
M VG + PE AYG AG IP NATLV+++
Sbjct: 99 -ATMKVGEVCHITCKPEYAYG--SAGS---PPKIPPNATLVFEVEL 138
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 20/120 (16%)
Query: 89 SGLGYCDIASGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
+GL Y + +G G EAP + + V+Y DG FD+SY R PL+ R+
Sbjct: 121 TGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--------- 170
Query: 148 DQGILGG--DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
G++ G +G+ + GGK KL IPPELAYG +G IP N+TLV+D+ + +
Sbjct: 171 -DGVIPGWTEGLKNIKKGGKIKLVIPPELAYGK------AGVPGIPPNSTLVFDVELLDV 223
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 98 SGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDG 156
G+G E P G+ + VHYT DG FDSS R + +G G+VIK D I
Sbjct: 60 EGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAI----- 114
Query: 157 VPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINF 202
M VG + PE AYG AG IP NATLV+++
Sbjct: 115 -ATMKVGEVCHITCKPEYAYG--SAGS---PPKIPPNATLVFEVEL 154
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 20/120 (16%)
Query: 89 SGLGYCDIASGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGL 147
+GL Y + +G G EAP + + V+Y DG FD+SY R PL+ R+
Sbjct: 121 TGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--------- 170
Query: 148 DQGILGG--DGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
G++ G +G+ + GGK KL IPPELAYG +G IP N+TLV+D+ + +
Sbjct: 171 -DGVIPGWTEGLKNIKKGGKIKLVIPPELAYGK------AGVPGIPPNSTLVFDVELLDV 223
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 107 GELINVHYTARF-ADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGK 165
G + VHY + + G +FDSS +R P +G G+VIKG D V M K
Sbjct: 36 GNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDI------CVASMTKNEK 89
Query: 166 RKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
+++ + YG E GC +IP N+ L+++I +
Sbjct: 90 CSVRLDSKYGYGEE--GCGE---SIPGNSVLIFEIELI 122
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 98 SGSGVEAPY-GELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDG 156
G GV P G + VHY +G FDSS R + +G G VIKG D G
Sbjct: 23 EGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDL------G 76
Query: 157 VPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINF 202
V M G + I + YG AG IP ATL++++
Sbjct: 77 VATMTKGEVAEFTIRSDYGYG--DAGS---PPKIPGGATLIFEVEL 117
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 107 GELINVHYTARF-ADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGK 165
G + VHY + + G +FDSS+ R P + G+VIKG D V M K
Sbjct: 37 GNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDI------CVSSMRKNEK 90
Query: 166 RKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
++I YG E G +IP N+ L+++I +
Sbjct: 91 CLVRIESMYGYGDEGCG-----ESIPGNSVLLFEIELL 123
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 107 GELINVHYTARF-ADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGK 165
G + VHY + + G +FDSS+ R P + G+VIKG D V M K
Sbjct: 37 GNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDI------CVSSMRKNEK 90
Query: 166 RKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFV 203
++I YG E G +IP N+ L+++I +
Sbjct: 91 CLVRIESMYGYGDEGCG-----ESIPGNSVLLFEIELL 123
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 112 VHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIP 171
VH+T + DG +S+ +P R+G + +GL+Q +LG + VG K +
Sbjct: 33 VHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLG------LKVGDKTTFSLE 86
Query: 172 PELAYG-PEP 180
P+ A+G P P
Sbjct: 87 PDAAFGVPSP 96
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Query: 110 INVHYTARFADGIIFDSSYKRA-------------RPLTMRIGVGKVIKGLDQGILGGDG 156
I V Y + G +FD+S + PL +G G++I+G ++ +L
Sbjct: 8 IKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD--- 64
Query: 157 VPPMHVGGKRKLQIPPELAYG 177
M VG ++ ++IP E AYG
Sbjct: 65 ---MEVGDEKTVKIPAEKAYG 82
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 89 SGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLD 148
G+ ++ G+G + + V Y R DG IFD S +P R+ VI G
Sbjct: 117 DGILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRL--DSVISGWT 171
Query: 149 QGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ M G K +L IP + AYG E AG I LV++I + +
Sbjct: 172 SALQN------MPTGAKWRLVIPSDQAYGAEGAGDL-----IDPFTPLVFEIELIAV 217
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 20/84 (23%)
Query: 107 GELINVHYTARFADGIIFDSSYKRAR-------------PLTMRIGVGKVIKGLDQGILG 153
G+++ + Y + DG +FD++ + P+ + G G+V+ GLD+ IL
Sbjct: 5 GKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL- 62
Query: 154 GDGVPPMHVGGKRKLQIPPELAYG 177
M VG +R++ +PPE A+G
Sbjct: 63 -----EMDVGEEREVVLPPEKAFG 81
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 20/84 (23%)
Query: 107 GELINVHYTARFADGIIFDSSYKRAR-------------PLTMRIGVGKVIKGLDQGILG 153
G+++ + Y + DG +FD++ + P+ + G G+V+ GLD+ IL
Sbjct: 5 GKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL- 62
Query: 154 GDGVPPMHVGGKRKLQIPPELAYG 177
M VG +R++ +PPE A+G
Sbjct: 63 -----EMDVGEEREVVLPPEKAFG 81
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 112 VHYTARFADGI-IFDSSYKRARPLTMRIG-VGKVIKGLDQGILGGDGVPPMHVGGKRKLQ 169
+HY A + F+ ++ +P+ + +G K + GL GV M G + +
Sbjct: 72 LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGL------AIGVASMKSGERALVH 125
Query: 170 IPPELAYGPEPAGCFSGDCNIPANATLVYDINFVG 204
+ ELAYG E G FS N+P A L+Y++ +G
Sbjct: 126 VGWELAYGKE--GNFSF-PNVPPMADLLYEVEVIG 157
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 112 VHYTARFADGI-IFDSSYKRARPLTMRIG-VGKVIKGLDQGILGGDGVPPMHVGGKRKLQ 169
+HY A + F+ ++ +P+ + +G K + GL GV M G + +
Sbjct: 72 LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGL------AIGVASMKSGERALVH 125
Query: 170 IPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205
+ ELAYG E G FS N+P A L+Y++ +G
Sbjct: 126 VGWELAYGKE--GNFSF-PNVPPMADLLYEVEVIGF 158
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 124 FDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGC 183
FDS+Y R P M++G + G++ G+L M G + P AYG GC
Sbjct: 62 FDSNYFRKTPRLMKLGEDITLWGMELGLLS------MRRGELARFLFKPNYAYG--TLGC 113
Query: 184 FSGDCNIPANATLVYDINFV 203
IP N T++++I +
Sbjct: 114 ---PPLIPPNTTVLFEIELL 130
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 112 VHYTARFA-DGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQI 170
+ Y R I+ DS+ + PL IG ++I GL++ +L +G ++ I
Sbjct: 15 IEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKA------QIGEWEEVVI 67
Query: 171 PPELAYG 177
PE AYG
Sbjct: 68 APEEAYG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,127,892
Number of Sequences: 62578
Number of extensions: 260245
Number of successful extensions: 529
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 64
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)