Query 028234
Match_columns 211
No_of_seqs 192 out of 1503
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 1.3E-31 2.8E-36 214.6 15.6 124 70-206 82-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 5.2E-29 1.1E-33 175.3 11.7 106 90-206 2-108 (108)
3 PRK11570 peptidyl-prolyl cis-t 100.0 2.3E-27 4.9E-32 194.1 15.4 122 72-206 85-206 (206)
4 TIGR03516 ppisom_GldI peptidyl 100.0 9.5E-27 2.1E-31 186.3 17.4 126 69-207 50-177 (177)
5 KOG0552 FKBP-type peptidyl-pro 99.9 4.1E-27 8.8E-32 192.6 13.3 109 85-206 116-226 (226)
6 KOG0549 FKBP-type peptidyl-pro 99.9 1.2E-26 2.5E-31 182.5 11.5 110 89-209 68-179 (188)
7 PRK10902 FKBP-type peptidyl-pr 99.9 1.4E-25 3E-30 190.0 16.1 124 73-210 130-253 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.9 8.3E-22 1.8E-26 141.8 11.6 91 103-203 4-94 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.7 5.4E-17 1.2E-21 127.6 10.0 72 103-180 4-75 (156)
10 KOG0543 FKBP-type peptidyl-pro 99.6 3.1E-15 6.7E-20 131.0 13.7 106 87-206 82-190 (397)
11 COG1047 SlpA FKBP-type peptidy 99.6 6E-15 1.3E-19 116.6 10.6 72 103-180 2-73 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.6 1.5E-14 3.2E-19 117.2 9.9 71 103-180 2-72 (196)
13 KOG0543 FKBP-type peptidyl-pro 99.2 4.4E-11 9.6E-16 105.1 6.4 82 97-204 1-83 (397)
14 TIGR00115 tig trigger factor. 99.0 2.9E-09 6.4E-14 95.6 10.9 88 102-208 145-232 (408)
15 PRK01490 tig trigger factor; P 98.9 1.4E-08 3E-13 92.0 11.5 87 103-208 157-243 (435)
16 COG0544 Tig FKBP-type peptidyl 98.7 8.1E-08 1.7E-12 87.1 9.6 87 104-209 158-244 (441)
17 KOG0545 Aryl-hydrocarbon recep 97.7 1.5E-05 3.1E-10 66.8 1.7 80 86-171 7-90 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.7 4.2E-05 9.2E-10 60.9 3.5 55 136-205 1-55 (188)
19 PLN00042 photosystem II oxygen 60.3 23 0.0005 30.1 5.3 20 35-54 44-63 (260)
20 PF12690 BsuPI: Intracellular 57.5 35 0.00076 23.6 5.1 10 160-169 56-65 (82)
21 PRK05892 nucleoside diphosphat 51.4 71 0.0015 25.0 6.5 22 145-172 123-144 (158)
22 PF11874 DUF3394: Domain of un 51.3 40 0.00087 27.2 5.2 59 103-171 71-129 (183)
23 PF01346 FKBP_N: Domain amino 48.1 12 0.00027 27.5 1.7 23 73-95 102-124 (124)
24 PHA02122 hypothetical protein 39.4 54 0.0012 21.2 3.4 21 105-126 39-59 (65)
25 PF05688 DUF824: Salmonella re 36.3 66 0.0014 20.0 3.3 35 102-141 7-41 (47)
26 PRK00226 greA transcription el 31.6 55 0.0012 25.3 3.1 23 144-172 123-145 (157)
27 PF07076 DUF1344: Protein of u 29.0 1.7E+02 0.0038 19.2 4.6 39 84-124 18-56 (61)
28 CHL00084 rpl19 ribosomal prote 28.8 42 0.00091 25.1 1.9 18 102-119 21-38 (117)
29 TIGR01461 greB transcription e 28.4 1.3E+02 0.0029 23.3 4.8 23 144-172 120-142 (156)
30 PF10518 TAT_signal: TAT (twin 25.0 88 0.0019 16.7 2.2 18 42-59 3-20 (26)
31 PF13757 VIT_2: Vault protein 24.0 70 0.0015 22.1 2.1 41 110-167 30-70 (78)
32 PF01272 GreA_GreB: Transcript 22.1 1.1E+02 0.0023 20.6 2.8 22 145-172 44-65 (77)
33 PLN03086 PRLI-interacting fact 22.0 4.9E+02 0.011 24.9 7.9 55 106-169 170-225 (567)
34 PRK05753 nucleoside diphosphat 21.3 2.2E+02 0.0047 21.6 4.7 23 144-172 92-114 (137)
35 PRK13159 cytochrome c-type bio 20.2 86 0.0019 24.6 2.2 12 108-119 83-94 (155)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.3e-31 Score=214.60 Aligned_cols=124 Identities=40% Similarity=0.702 Sum_probs=113.8
Q ss_pred hhhhhhccCCCCCCeeecCCccEEEEEecCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHH
Q 028234 70 RIEYYATTADPPCEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQ 149 (211)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~G~~~~~l~~G~G~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~ 149 (211)
..+.+...+.....+.++++|++|++++.|+|+.|+.+|.|.+||++++.||++|||+|++++|+.|.+| .+|+||.+
T Consensus 82 ~~~~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~e 159 (205)
T COG0545 82 EGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDE 159 (205)
T ss_pred hHHHHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHH
Confidence 3344555566677889999999999999999999999999999999999999999999999999999996 99999999
Q ss_pred HHcCCCCCCCcccCcEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 028234 150 GILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIY 206 (211)
Q Consensus 150 al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~ 206 (211)
+|.+ |++|++|+++||++++||..|.++ .||||++|+|+|||++|.
T Consensus 160 gl~~------M~vG~k~~l~IP~~laYG~~g~~g-----~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 160 GLQG------MKVGGKRKLTIPPELAYGERGVPG-----VIPPNSTLVFEVELLDVK 205 (205)
T ss_pred HHhh------CCCCceEEEEeCchhccCcCCCCC-----CCCCCCeEEEEEEEEecC
Confidence 9999 999999999999999999999763 499999999999999974
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-29 Score=175.32 Aligned_cols=106 Identities=43% Similarity=0.759 Sum_probs=100.8
Q ss_pred ccEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEE
Q 028234 90 GLGYCDIASGSGVE-APYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKL 168 (211)
Q Consensus 90 G~~~~~l~~G~G~~-~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v 168 (211)
|+..+++.+|+|.. ++.||.|++||++.+.||+.|||+.+++.|+.|.+|.+++|.||++++.. |.+|++.++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~q------msvGekakL 75 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQ------MSVGEKAKL 75 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchh------cccccccee
Confidence 68899999999955 99999999999999999999999999999999999999999999999888 999999999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 028234 169 QIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIY 206 (211)
Q Consensus 169 ~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~ 206 (211)
.|.|+++||..|.+. .||||++|+|+|||+++.
T Consensus 76 ti~pd~aYG~~G~p~-----~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 76 TISPDYAYGPRGHPG-----GIPPNATLVFDVELLKVN 108 (108)
T ss_pred eeccccccCCCCCCC-----ccCCCcEEEEEEEEEecC
Confidence 999999999999764 899999999999999873
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.95 E-value=2.3e-27 Score=194.12 Aligned_cols=122 Identities=33% Similarity=0.546 Sum_probs=111.9
Q ss_pred hhhhccCCCCCCeeecCCccEEEEEecCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHH
Q 028234 72 EYYATTADPPCEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGI 151 (211)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~G~~~~~l~~G~G~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al 151 (211)
+.+...+.....++++++|++|+++++|+|..|+.||.|.+||++++.||++|+++|+++.|+.|.++ .+|+||+++|
T Consensus 85 ~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL 162 (206)
T PRK11570 85 VKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEAL 162 (206)
T ss_pred HHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHH
Confidence 34455556677889999999999999999999999999999999999999999999998899999994 6999999999
Q ss_pred cCCCCCCCcccCcEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 028234 152 LGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIY 206 (211)
Q Consensus 152 ~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~ 206 (211)
.+ |++|++++|+||++++||..+... .||||++|+|+|||++|.
T Consensus 163 ~~------M~~G~k~~~~IP~~lAYG~~g~~~-----~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 163 TL------MPVGSKWELTIPHELAYGERGAGA-----SIPPFSTLVFEVELLEIL 206 (206)
T ss_pred cC------CCCCCEEEEEECHHHcCCCCCCCC-----CcCCCCeEEEEEEEEEEC
Confidence 99 999999999999999999998753 899999999999999983
No 4
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.95 E-value=9.5e-27 Score=186.30 Aligned_cols=126 Identities=21% Similarity=0.366 Sum_probs=110.3
Q ss_pred hhhhhhhccCCCCCCeeecCCccEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHH
Q 028234 69 TRIEYYATTADPPCEFSFARSGLGYCDIAS--GSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKG 146 (211)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~G~~~~~l~~--G~G~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g 146 (211)
..++.+...+ +..++.++++|++|.++.+ |+|..|+.||.|++||++++.||++|+++++. .|+.|.+|.+++++|
T Consensus 50 ~~I~~~i~~~-~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~G 127 (177)
T TIGR03516 50 AAIKRIISAD-SIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSG 127 (177)
T ss_pred HHHHHHHHhC-CCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHH
Confidence 3344444332 3467899999999999876 67778999999999999999999999999864 599999999999999
Q ss_pred HHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 028234 147 LDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIYS 207 (211)
Q Consensus 147 ~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~~ 207 (211)
|+++|.+ |++||+++|+||++++||..|... .||||++|+|+|||++|++
T Consensus 128 l~e~L~~------Mk~Ge~~~~~iP~~~AYG~~g~~~-----~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 128 LRDGLKL------MKEGETATFLFPSHKAYGYYGDQN-----KIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred HHHHHcC------CCCCCEEEEEECHHHcCCCCCCCC-----CcCcCCcEEEEEEEEEecC
Confidence 9999999 999999999999999999998753 7999999999999999964
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-27 Score=192.63 Aligned_cols=109 Identities=42% Similarity=0.822 Sum_probs=104.2
Q ss_pred eecCCccEEEEEecCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCceE-EeccCCcccHHHHHHHcCCCCCCCccc
Q 028234 85 SFARSGLGYCDIASGSGVEAPYGELINVHYTARFA-DGIIFDSSYKRARPLT-MRIGVGKVIKGLDQGILGGDGVPPMHV 162 (211)
Q Consensus 85 ~~~~~G~~~~~l~~G~G~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~-~~lg~~~~i~g~~~al~g~~~~~~m~~ 162 (211)
.++++|++|++++.|+|+.+..|++|.+||.+++. +|++|++++.. .|+. |.+|.+++|+||+.+|.| |++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~G------Mkv 188 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEG------MKV 188 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhh------hcc
Confidence 57899999999999999999999999999999998 99999999854 7888 999999999999999999 999
Q ss_pred CcEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 028234 163 GGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIY 206 (211)
Q Consensus 163 G~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~ 206 (211)
|++|+|+|||+++||.++.+ .||||++|+|+|||+.|+
T Consensus 189 GGkRrviIPp~lgYg~~g~~------~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 189 GGKRRVIIPPELGYGKKGVP------EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred CCeeEEEeCccccccccCcC------cCCCCCcEEEEEEEEecC
Confidence 99999999999999999987 899999999999999874
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=182.53 Aligned_cols=110 Identities=46% Similarity=0.765 Sum_probs=98.0
Q ss_pred CccEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEE
Q 028234 89 SGLGYCDIAS--GSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKR 166 (211)
Q Consensus 89 ~G~~~~~l~~--G~G~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~ 166 (211)
.++++.++.+ .-..+.+.||.+.+||++.+.||++|||||.+++|++|.+|.+++|+||+++|.| |++||+|
T Consensus 68 ~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~g------MCvGEkR 141 (188)
T KOG0549|consen 68 EELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLG------MCVGEKR 141 (188)
T ss_pred CceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhh------hCcccce
Confidence 3455555544 1345688999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeeecCC
Q 028234 167 KLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIYSGN 209 (211)
Q Consensus 167 ~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~~~~ 209 (211)
+++|||+++||++|.++ .||+++.|+|+|||+++.+.+
T Consensus 142 kl~IPp~LgYG~~G~~~-----~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 142 KLIIPPHLGYGERGAPP-----KIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred EEecCccccCccCCCCC-----CCCCCeeEEEEEEEEEeecCC
Confidence 99999999999999863 699999999999999998753
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=1.4e-25 Score=189.98 Aligned_cols=124 Identities=35% Similarity=0.590 Sum_probs=112.9
Q ss_pred hhhccCCCCCCeeecCCccEEEEEecCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHc
Q 028234 73 YYATTADPPCEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGIL 152 (211)
Q Consensus 73 ~~~~~~~~~~~~~~~~~G~~~~~l~~G~G~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~ 152 (211)
.+...+.....++++++|++|+++++|+|..|+.||.|.|||++++.||++|+++|.++.|+.|.+ +.+++||+++|.
T Consensus 130 ~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~ 207 (269)
T PRK10902 130 KYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLK 207 (269)
T ss_pred HHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHh
Confidence 344455566788999999999999999999999999999999999999999999998889999998 569999999999
Q ss_pred CCCCCCCcccCcEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeeecCCC
Q 028234 153 GGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIYSGNR 210 (211)
Q Consensus 153 g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~~~~~ 210 (211)
+ |++|++++|+||++++||..+.. +||||++|+|+|||++|++.+.
T Consensus 208 ~------Mk~Gek~~l~IP~~laYG~~g~~------gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 208 N------IKKGGKIKLVIPPELAYGKAGVP------GIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred c------CCCCcEEEEEECchhhCCCCCCC------CCCCCCcEEEEEEEEEeccCcc
Confidence 9 99999999999999999999865 7999999999999999987543
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.88 E-value=8.3e-22 Score=141.85 Aligned_cols=91 Identities=44% Similarity=0.886 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCCCC
Q 028234 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAG 182 (211)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~ 182 (211)
.++.||.|++||++++.+|++|++++..+.|+.|.+|.+++++||+++|.+ |++|++++|+||++++||..+..
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~------m~~Ge~~~~~vp~~~ayg~~~~~ 77 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIG------MKVGEKREFYVPPELAYGEKGLE 77 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTT------SBTTEEEEEEEEGGGTTTTTTBC
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhccc------ccCCCEeeeEeCChhhcCccccC
Confidence 389999999999999999999999998889999999999999999999999 99999999999999999998874
Q ss_pred CCCCCCCCCCCCeEEEEEEEE
Q 028234 183 CFSGDCNIPANATLVYDINFV 203 (211)
Q Consensus 183 ~~~~~~~ip~~~~l~~~vel~ 203 (211)
. ..||++++|+|+|+|+
T Consensus 78 ~----~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 78 P----PKIPPNSTLVFEIELL 94 (94)
T ss_dssp T----TTBTTTSEEEEEEEEE
T ss_pred C----CCcCCCCeEEEEEEEC
Confidence 1 2599999999999996
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=5.4e-17 Score=127.57 Aligned_cols=72 Identities=31% Similarity=0.620 Sum_probs=68.4
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCC
Q 028234 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEP 180 (211)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g 180 (211)
.++.|+.|.+||++++.||++|++|+..++|+.|.+|.+++++||+++|.| |++|+++.|.|||+++||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~g------m~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLG------LKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcC------CCCCCEEEEEEChHHhcCCCC
Confidence 578999999999999999999999998789999999999999999999999 999999999999999999863
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.1e-15 Score=131.01 Aligned_cols=106 Identities=30% Similarity=0.473 Sum_probs=92.6
Q ss_pred cCCccEEEEEecCCC--CCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccC-CcccHHHHHHHcCCCCCCCcccC
Q 028234 87 ARSGLGYCDIASGSG--VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV-GKVIKGLDQGILGGDGVPPMHVG 163 (211)
Q Consensus 87 ~~~G~~~~~l~~G~G--~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~-~~~i~g~~~al~g~~~~~~m~~G 163 (211)
.+.+|..+++++|.| ..|..|..|.+||.+++.|+ +|+++. ..+.|..|. ..++.||+.+|.. |++|
T Consensus 82 ~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~------M~~G 151 (397)
T KOG0543|consen 82 LDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRM------MKVG 151 (397)
T ss_pred cCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHh------cCcc
Confidence 388999999999999 55999999999999999877 676653 347888887 4799999999999 9999
Q ss_pred cEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 028234 164 GKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGIY 206 (211)
Q Consensus 164 ~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i~ 206 (211)
+.+.|+|+|.++||..+.. ++.||||++|.|+|+|+++.
T Consensus 152 E~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 152 EVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred ceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeee
Confidence 9999999999999954432 34999999999999999998
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6e-15 Score=116.55 Aligned_cols=72 Identities=35% Similarity=0.702 Sum_probs=68.0
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCC
Q 028234 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEP 180 (211)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g 180 (211)
.++.||.|.+||++++.||++||+|.....|+.|.+|.+++++||+++|.| |.+|++..|.|||+.|||.+.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g------~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLG------KEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhC------CCCCceeEEEeCchHhcCCCC
Confidence 478899999999999999999999987568999999999999999999999 999999999999999999873
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.57 E-value=1.5e-14 Score=117.24 Aligned_cols=71 Identities=28% Similarity=0.479 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCC
Q 028234 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEP 180 (211)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g 180 (211)
+++.++.|+++|++++.||++|++|+. ..|+.|.+|.++++++|+++|.| |++|+++.|.|||+.+||.+.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G------~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEG------HEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcC------CCCCCEEEEEEChHHhcCCCC
Confidence 367899999999999999999999975 57999999999999999999999 999999999999999999874
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.4e-11 Score=105.09 Aligned_cols=82 Identities=38% Similarity=0.691 Sum_probs=72.7
Q ss_pred ecCCCCC-CCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCC
Q 028234 97 ASGSGVE-APYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELA 175 (211)
Q Consensus 97 ~~G~G~~-~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~ 175 (211)
++|+|.. |..||.|.+||++++.||+.||+|.+ +.|+.|.+|.+.+|.||+.++.. |+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~t------m~~------------- 60 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVAT------MKK------------- 60 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccccccccccc------ccc-------------
Confidence 4788877 99999999999999999999999998 78999999999999999988777 887
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEEEEe
Q 028234 176 YGPEPAGCFSGDCNIPANATLVYDINFVG 204 (211)
Q Consensus 176 yg~~g~~~~~~~~~ip~~~~l~~~vel~~ 204 (211)
|..+.++ .||++++|.|+|++++
T Consensus 61 -g~~~~pp-----~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 61 -GEAGSPP-----KIPSNATLLFEVELLD 83 (397)
T ss_pred -cccCCCC-----CCCCCcceeeeecccC
Confidence 5555543 8999999999999853
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.00 E-value=2.9e-09 Score=95.61 Aligned_cols=88 Identities=18% Similarity=0.440 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCCC
Q 028234 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPA 181 (211)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~ 181 (211)
..++.||.|+++|+++. +|+.++++. ..++.|.+|.+.+++||+++|.| |++|+++.|.++....|+....
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G------~k~Gd~~~~~v~~p~~~~~~~~ 215 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVG------MKAGEEKEIKVTFPEDYHAEEL 215 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCC------CCCCCeeEEEecCccccCcccC
Confidence 35789999999999986 899998874 46899999999999999999999 9999999999998888886543
Q ss_pred CCCCCCCCCCCCCeEEEEEEEEeeecC
Q 028234 182 GCFSGDCNIPANATLVYDINFVGIYSG 208 (211)
Q Consensus 182 ~~~~~~~~ip~~~~l~~~vel~~i~~~ 208 (211)
+|.++.|+|+|.+|+..
T Consensus 216 ----------~gk~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 216 ----------AGKEATFKVTVKEVKEK 232 (408)
T ss_pred ----------CCCeEEEEEEEEEeccC
Confidence 57899999999999754
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.90 E-value=1.4e-08 Score=92.03 Aligned_cols=87 Identities=18% Similarity=0.456 Sum_probs=76.7
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCCCC
Q 028234 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAG 182 (211)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~ 182 (211)
.++.||.|+++|.++. ||+.|+++. ..++.|.+|.+.+++||+++|.| |++|+++.|-++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G------~k~Ge~~~~~~~~p~~~~~~~l- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVG------MKAGEEKTIDVTFPEDYHAEDL- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCC------CCCCCeeEEEecCccccccccC-
Confidence 4799999999999998 899888764 36899999999999999999999 9999999999998888876543
Q ss_pred CCCCCCCCCCCCeEEEEEEEEeeecC
Q 028234 183 CFSGDCNIPANATLVYDINFVGIYSG 208 (211)
Q Consensus 183 ~~~~~~~ip~~~~l~~~vel~~i~~~ 208 (211)
+|.++.|.|+|.+|+..
T Consensus 227 ---------agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 227 ---------AGKEATFKVTVKEVKEK 243 (435)
T ss_pred ---------CCCeEEEEEEEEEeccC
Confidence 56899999999999754
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=8.1e-08 Score=87.06 Aligned_cols=87 Identities=18% Similarity=0.460 Sum_probs=75.3
Q ss_pred CCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCCCCC
Q 028234 104 APYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGC 183 (211)
Q Consensus 104 ~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~~ 183 (211)
++.||.|+|+|.++. ||..|.+.- ..-+.|.+|.+.+||||+++|.| |+.|+++.|-+.....|.....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG------~k~Ge~k~i~vtFP~dy~a~~L-- 226 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVG------MKAGEEKDIKVTFPEDYHAEEL-- 226 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhhhcc------CcCCCeeEEEEEcccccchhHh--
Confidence 899999999999965 888888763 45789999999999999999999 9999999988877777776654
Q ss_pred CCCCCCCCCCCeEEEEEEEEeeecCC
Q 028234 184 FSGDCNIPANATLVYDINFVGIYSGN 209 (211)
Q Consensus 184 ~~~~~~ip~~~~l~~~vel~~i~~~~ 209 (211)
+|.+..|.|+|..|+...
T Consensus 227 --------aGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 227 --------AGKEATFKVKVKEVKKRE 244 (441)
T ss_pred --------CCCceEEEEEEEEEeecC
Confidence 468999999999997653
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.5e-05 Score=66.84 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=69.6
Q ss_pred ecCCccEEEEEecCCCCC--CCCCCEEEEEEEEEEc--CCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcc
Q 028234 86 FARSGLGYCDIASGSGVE--APYGELINVHYTARFA--DGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMH 161 (211)
Q Consensus 86 ~~~~G~~~~~l~~G~G~~--~~~gd~V~v~y~~~~~--~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~ 161 (211)
....|++..++..|+|+- ..+|..|.|||..... .++++|+|...|.|..+.+|+-.-.+-|+..|.. |+
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~t------M~ 80 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTT------MR 80 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHH------Hh
Confidence 345789999999999986 4589999999999875 4679999999999999999998889999999988 99
Q ss_pred cCcEEEEEEC
Q 028234 162 VGGKRKLQIP 171 (211)
Q Consensus 162 ~G~~~~v~vp 171 (211)
+++...|.+.
T Consensus 81 v~EvaqF~~d 90 (329)
T KOG0545|consen 81 VHEVAQFWCD 90 (329)
T ss_pred hhhHHHhhhh
Confidence 9998877554
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=4.2e-05 Score=60.94 Aligned_cols=55 Identities=42% Similarity=0.634 Sum_probs=43.4
Q ss_pred EeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEECCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 028234 136 MRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIPPELAYGPEPAGCFSGDCNIPANATLVYDINFVGI 205 (211)
Q Consensus 136 ~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp~~~~yg~~g~~~~~~~~~ip~~~~l~~~vel~~i 205 (211)
|++|.+.+|+|+++++.| |+.|+++++++||+++||..+... --.++|.+.++.+
T Consensus 1 ~~~g~~~vi~gm~~~~~g------~c~ge~rkvv~pp~l~fg~~~~~~---------~~~~~~~~~l~~~ 55 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEG------MCNGEKRKVVIPPHLGFGEGGRGD---------LNILVITILLVLL 55 (188)
T ss_pred CcccceEEecCHHHHhhh------hhccccceeccCCccccccccccc---------ccceEEEeeeeeh
Confidence 457888999999999999 999999999999999999665431 2345666665543
No 19
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=60.28 E-value=23 Score=30.14 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=10.2
Q ss_pred hhcccCCCcchhHHHHHHHH
Q 028234 35 QQQLSFDPKKRFFEVGIGLL 54 (211)
Q Consensus 35 ~~~~~~~~~r~~~~~~~~~~ 54 (211)
.++.....||+.|++.++.+
T Consensus 44 ~~~~~~~srr~~l~~~~ga~ 63 (260)
T PLN00042 44 EEDNSAVSRRAALALLAGAA 63 (260)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 34444456666665544443
No 20
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=57.55 E-value=35 Score=23.59 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=3.8
Q ss_pred cccCcEEEEE
Q 028234 160 MHVGGKRKLQ 169 (211)
Q Consensus 160 m~~G~~~~v~ 169 (211)
+..|+...+.
T Consensus 56 l~pGe~~~~~ 65 (82)
T PF12690_consen 56 LEPGESLTYE 65 (82)
T ss_dssp E-TT-EEEEE
T ss_pred ECCCCEEEEE
Confidence 4555554443
No 21
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=51.45 E-value=71 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCCCCCcccCcEEEEEECC
Q 028234 145 KGLDQGILGGDGVPPMHVGGKRKLQIPP 172 (211)
Q Consensus 145 ~g~~~al~g~~~~~~m~~G~~~~v~vp~ 172 (211)
-.+-.+|.| .++||.+.+..|.
T Consensus 123 SPlG~ALlG------k~vGD~v~v~~p~ 144 (158)
T PRK05892 123 SPLGQALAG------HQAGDTVTYSTPQ 144 (158)
T ss_pred CHHHHHHhC------CCCCCEEEEEcCC
Confidence 458899999 9999999987664
No 22
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=51.26 E-value=40 Score=27.20 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=39.9
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEEEEEC
Q 028234 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRKLQIP 171 (211)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~v~vp 171 (211)
...+|+.+.+.+.+.+.+|+....+ ..+.++++. .|-+ -|.. -||.++..|++..|-.+
T Consensus 71 ~~~~g~~lrl~V~G~~~~G~~~~k~------v~lpl~~~~--~g~e-RL~~-~GL~l~~e~~~~~Vd~v 129 (183)
T PF11874_consen 71 QLPPGSSLRLRVEGPDFEGDPVTKT------VLLPLGDGA--DGEE-RLEA-AGLTLMEEGGKVIVDEV 129 (183)
T ss_pred cCCCCCEEEEEEEccCCCCCceEEE------EEEEcCCCC--CHHH-HHHh-CCCEEEeeCCEEEEEec
Confidence 3678899999999988788766433 566676554 3322 2222 36888999999877655
No 23
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=48.09 E-value=12 Score=27.48 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=15.2
Q ss_pred hhhccCCCCCCeeecCCccEEEE
Q 028234 73 YYATTADPPCEFSFARSGLGYCD 95 (211)
Q Consensus 73 ~~~~~~~~~~~~~~~~~G~~~~~ 95 (211)
.+...+.....++++++||+|+|
T Consensus 102 ~fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 102 AFLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHHTSTTEEE-TTS-EEEE
T ss_pred HHHHHHcCCCCCEECCCCCeeeC
Confidence 33344455678999999999986
No 24
>PHA02122 hypothetical protein
Probab=39.43 E-value=54 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=16.7
Q ss_pred CCCCEEEEEEEEEEcCCcEEec
Q 028234 105 PYGELINVHYTARFADGIIFDS 126 (211)
Q Consensus 105 ~~gd~V~v~y~~~~~~G~~~~s 126 (211)
..||.|.++|.+.. ||+.|-.
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEEe
Confidence 46899999999987 7877643
No 25
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=36.25 E-value=66 Score=19.97 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCceEEeccCC
Q 028234 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG 141 (211)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~ 141 (211)
.+++.|+.+.+..+.++.+|..+.. .+|.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 4588999999999999988876644 4677766543
No 26
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=31.63 E-value=55 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=19.1
Q ss_pred cHHHHHHHcCCCCCCCcccCcEEEEEECC
Q 028234 144 IKGLDQGILGGDGVPPMHVGGKRKLQIPP 172 (211)
Q Consensus 144 i~g~~~al~g~~~~~~m~~G~~~~v~vp~ 172 (211)
.-.+-.+|.| .++|+.+.+.+|.
T Consensus 123 ~SPlG~aLlG------k~~Gd~v~~~~p~ 145 (157)
T PRK00226 123 ESPIARALIG------KKVGDTVEVTTPG 145 (157)
T ss_pred CChHHHHHhC------CCCCCEEEEEcCC
Confidence 3457899999 9999999988764
No 27
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=28.97 E-value=1.7e+02 Score=19.20 Aligned_cols=39 Identities=15% Similarity=-0.100 Sum_probs=27.3
Q ss_pred eeecCCccEEEEEecCCCCCCCCCCEEEEEEEEEEcCCcEE
Q 028234 84 FSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIF 124 (211)
Q Consensus 84 ~~~~~~G~~~~~l~~G~G~~~~~gd~V~v~y~~~~~~G~~~ 124 (211)
..+.++|-.|+.-.+=+=+.+++|..|.|+|...+ |+.+
T Consensus 18 titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~~--gk~v 56 (61)
T PF07076_consen 18 TITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEVD--GKRV 56 (61)
T ss_pred EEEecCCCEEECCCcccccccCCCCEEEEEEEccC--CcEE
Confidence 45677787777544434455999999999998764 5443
No 28
>CHL00084 rpl19 ribosomal protein L19
Probab=28.82 E-value=42 Score=25.06 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=14.6
Q ss_pred CCCCCCCEEEEEEEEEEc
Q 028234 102 VEAPYGELINVHYTARFA 119 (211)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~ 119 (211)
+....||.|.|+|.....
T Consensus 21 p~f~~GDtV~V~~~i~eg 38 (117)
T CHL00084 21 PKIRVGDTVKVGVLIQEG 38 (117)
T ss_pred CccCCCCEEEEEEEEecC
Confidence 447899999999988753
No 29
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.42 E-value=1.3e+02 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.1
Q ss_pred cHHHHHHHcCCCCCCCcccCcEEEEEECC
Q 028234 144 IKGLDQGILGGDGVPPMHVGGKRKLQIPP 172 (211)
Q Consensus 144 i~g~~~al~g~~~~~~m~~G~~~~v~vp~ 172 (211)
.-.+-.+|.| .++|+.+.+.+|.
T Consensus 120 ~SPlG~ALlG------k~~GD~v~v~~p~ 142 (156)
T TIGR01461 120 DSPLARALLK------KEVGDEVVVNTPA 142 (156)
T ss_pred CCHHHHHHcC------CCCCCEEEEEcCC
Confidence 3458899999 9999999987664
No 30
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=24.99 E-value=88 Score=16.66 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=10.1
Q ss_pred CcchhHHHHHHHHHHHHh
Q 028234 42 PKKRFFEVGIGLLASSVI 59 (211)
Q Consensus 42 ~~r~~~~~~~~~~~a~~~ 59 (211)
+||.++..++++.++..+
T Consensus 3 sRR~fLk~~~a~~a~~~~ 20 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAAL 20 (26)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 567776655555544443
No 31
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=24.00 E-value=70 Score=22.08 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=27.9
Q ss_pred EEEEEEEEEcCCcEEecccCCCCceEEeccCCcccHHHHHHHcCCCCCCCcccCcEEE
Q 028234 110 INVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGGKRK 167 (211)
Q Consensus 110 V~v~y~~~~~~G~~~~st~~~~~p~~~~lg~~~~i~g~~~al~g~~~~~~m~~G~~~~ 167 (211)
+++|.+-++.+...++.. |.|.+.++..+-||+ |+.+++++
T Consensus 30 ~ta~lty~N~~~~plEg~------f~fPL~e~~~V~gfe-----------a~i~gr~v 70 (78)
T PF13757_consen 30 TTASLTYENPEDRPLEGV------FVFPLDEGATVVGFE-----------ADIGGRIV 70 (78)
T ss_pred EEEEEEEECCCCCcEEEE------EEEecCCCcEEEEEE-----------EEeCCcEE
Confidence 455555555555666543 688999999888887 66766654
No 32
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=22.15 E-value=1.1e+02 Score=20.57 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCCCCcccCcEEEEEECC
Q 028234 145 KGLDQGILGGDGVPPMHVGGKRKLQIPP 172 (211)
Q Consensus 145 ~g~~~al~g~~~~~~m~~G~~~~v~vp~ 172 (211)
-.+-.||.| .++|+.+.+.+|.
T Consensus 44 SPLG~ALlG------~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 44 SPLGKALLG------KKVGDEVEVELPG 65 (77)
T ss_dssp SHHHHHHTT-------BTT-EEEEEETT
T ss_pred CHHHHHhcC------CCCCCEEEEEeCC
Confidence 458899999 9999999998764
No 33
>PLN03086 PRLI-interacting factor K; Provisional
Probab=22.04 E-value=4.9e+02 Score=24.90 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=32.5
Q ss_pred CCCEEEEEEEEEEcCCcEEecccCCCCceEEec-cCCcccHHHHHHHcCCCCCCCcccCcEEEEE
Q 028234 106 YGELINVHYTARFADGIIFDSSYKRARPLTMRI-GVGKVIKGLDQGILGGDGVPPMHVGGKRKLQ 169 (211)
Q Consensus 106 ~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~l-g~~~~i~g~~~al~g~~~~~~m~~G~~~~v~ 169 (211)
.|+.|+|+|+ .+..|+.+.= +|....+ .-.+.-.-|+..|.. ...+.+|+...|.
T Consensus 170 ~~~~v~v~~~-~Lpkgt~vkl-----qP~~~~f~di~npKavLE~~Lr~---~stLT~Gd~i~i~ 225 (567)
T PLN03086 170 DVPLVEVRYI-WLPKGTYAKL-----QPDGVGFSDLPNHKAVLETALRQ---HATLSEDDVLVVN 225 (567)
T ss_pred CCCeEEEEEe-ecCCCCEEEE-----eeccCCcCCcccHHHHHHHHhhc---CccccCCCEEEEe
Confidence 4678888887 5556654421 2333222 112333446777775 5779999988874
No 34
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=21.30 E-value=2.2e+02 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=18.8
Q ss_pred cHHHHHHHcCCCCCCCcccCcEEEEEECC
Q 028234 144 IKGLDQGILGGDGVPPMHVGGKRKLQIPP 172 (211)
Q Consensus 144 i~g~~~al~g~~~~~~m~~G~~~~v~vp~ 172 (211)
.-.+-.||.| .++|+.+.+..|.
T Consensus 92 ~SPlG~ALlG------~~~Gd~v~v~~p~ 114 (137)
T PRK05753 92 LAPVGAALLG------LSVGQSIDWPLPG 114 (137)
T ss_pred cCHHHHHHcC------CCCCCEEEEECCC
Confidence 4568899999 9999999987553
No 35
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.20 E-value=86 Score=24.61 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=7.1
Q ss_pred CEEEEEEEEEEc
Q 028234 108 ELINVHYTARFA 119 (211)
Q Consensus 108 d~V~v~y~~~~~ 119 (211)
..|.|+|++-+.
T Consensus 83 ~~v~V~Y~GilP 94 (155)
T PRK13159 83 AATQVEYTGILP 94 (155)
T ss_pred cEEEEEEccCCC
Confidence 356667766543
Done!