BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028237
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 308 bits (790), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 147/173 (84%), Positives = 155/173 (89%)
Query: 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
+YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID K IKLQIWDTA
Sbjct: 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 78
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123
GQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+++NM IMLIGNK DL
Sbjct: 79 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
RR V EEGE FA+EHGLIFME SAKTA NVEEAFI TA IY+KIQ G+F
Sbjct: 139 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/169 (86%), Positives = 153/169 (90%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIWD
Sbjct: 6 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 65
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct: 66 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 125
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
DL RR V EEGE FA+EHGLIFME SAKTA NVEEAFI TA IY+K
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 236 bits (602), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 137/171 (80%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+Y+Y+FKYIIIGD GVGKSCLL QFT+K+F TIGVEFG R+I + + IKLQIWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQ FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR N N I+LIGNK
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
DL +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A IY+ IQ
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 136/168 (80%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+Y+Y+FKYIIIGD GVGKSCLL QFT+K+F TIGVEFG R+I + + IKLQIWD
Sbjct: 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR N N I+LIGNK
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
DL +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A IY+
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 213 bits (541), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 129/173 (74%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
+LFK+++IG G GKSCLL QF + +F+ + TIGVEFG+R++ + K +KLQIWDTAG
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
QE FRS+TRSYYRGAAGALLVYDIT RET+N LA+WL DAR A+ N+ ++L GNK DL
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 177
R V+ E +FA+E+ L+F+E SA T +NVEEAF+K A TI KI G D
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG+++I + K +KLQIWD
Sbjct: 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 177
DL R V+ E +FA+E+ L+F+E SA T +NVEEAF++ A I KI+ G D
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 203 bits (517), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 128/169 (75%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG+++I + K +KLQIWD
Sbjct: 7 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 66
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK
Sbjct: 67 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 126
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
DL R V+ E +FA+E+ L+F+E SA T ++VEEAF++ A I K
Sbjct: 127 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 127/169 (75%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG+++I + K +KLQIWD
Sbjct: 4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAG E FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK
Sbjct: 64 TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 123
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
DL R V+ E +FA+E+ L+F+E SA T ++VEEAF++ A I K
Sbjct: 124 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 126/170 (74%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I+++NK +KLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T R++F+++ W+++ ++A N+ +L+GNKCD
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
L +R V+++EG + A HG+ F+E SAK A NVE+AF A I K++Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 123/172 (71%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174
L ++ V ++FA G+ F+E SAK A NVE++F+ AA I K++ G
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 117/168 (69%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
SY YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWD
Sbjct: 16 SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ IML+GNK
Sbjct: 76 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
DL H RAV T+E FA+++GL F+E SA + NVE AF IY+
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 122/169 (72%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE++F+ AA I K++
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 122/169 (72%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 22 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCD
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE++F+ AA I K++
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 115/167 (68%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE +R IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ IML+GNK D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
L H RAV T+E FA+++ L F+E SA + NVEEAF IY+
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 122/169 (72%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGK+CLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE++F+ AA I K++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 120/168 (71%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCD
Sbjct: 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
L ++ V ++FA G+ F+E SAK A NVE++F AA I K+
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 115/166 (69%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ IML+GNK D
Sbjct: 86 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
L H RAV T+E FA+++GL F+E SA + NVE AF IY
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 121/169 (71%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y LFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 3 YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE++F+ AA I K++
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 121/169 (71%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+G KCD
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE++F+ AA I K++
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 124/180 (68%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y LFK ++IGD+GVGKS LL +FT F TIGVEF R + I+ K IK QIWDT
Sbjct: 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE +R+IT +YYRGA GAL+VYDI++ ++ + WL + R++A+ N+ + LIGNK D
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182
LAH RAV TEE + FA+E+ L+F E SA ++NV++AF + TIY+K+ D+ + S
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 121/171 (70%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
+Y YLFK ++IGD+GVGK+C+L +F++ F TIG++F R I +D K IKLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA+A++ M++GNKC
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
D+ +R VS E GE+ A ++G+ FME SAK NVE AF A I K+
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 115/167 (68%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 5 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ IML+GNK D
Sbjct: 65 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
L H RAV T+E FA+++GL F+E SA + NVE AF IY+
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 114/166 (68%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ IML+GNK D
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
L H RAV T+E FA+++GL F+E SA + NVE AF IY
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 119/168 (70%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
YLFK ++IGD+GVGK+C+L +F++ F TIG++F R I +D K IKLQIWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
QE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA+A++ M++GNKCD+
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
+R VS E GE+ A ++G+ FME SAK NVE AF A I K+
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 172
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 120/169 (71%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++A+ N+ +L+GNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE+AF+ AA I K++
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 120/169 (71%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++A+ N+ +L+GNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L ++ V ++FA G+ F+E SAK A NVE+AF+ AA I K++
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 113/166 (68%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ I L+GNK D
Sbjct: 68 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
L H RAV T+E FA+++GL F+E SA + NVE AF IY
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 113/166 (68%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA++N+ I L+GNK D
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
L H RAV T+E FA+++GL F+E SA + NVE AF IY
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 118/164 (71%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCDL ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
V ++FA G+ F+E SAK A NVE++F+ AA I K++
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 120/177 (67%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I ++NK IK QIWDT
Sbjct: 7 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GAL+VYDI++ ++ + WL + R++A+ N+ + LIGNK D
Sbjct: 67 AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 179
LAH RAV T+E + FA E+ ++F E SA + NV++AF + I++ + D+S
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLS 183
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWD 61
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF + I + +NK IK QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE +R+IT +YYRGA GALLVYDIT++ +F ++ WL++ R +A++N+ I+L+GNK
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
DL H R ++ + Q+AK+ L F+E SA A NVE AF + IY
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY 170
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
SY + K ++IGD+GVGKSCLL++F + +F P TIG++F + + I+ K +KLQ+WD
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++L+GNK
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
D+ R V+ ++GE AKE G+ F+E+SAK NV E F A I +KI
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 117/165 (70%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IG++GVGKSCLLL+F+D + + TIGV+F + + +D K +KLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + + +L+GNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
L +R V + ++FA + + F+E SA + NVE+AF+ A I
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 117/165 (70%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IG++GVGKSCLLL+F+D + + TIGV+F + + +D K +KLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + + +L+GNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
L +R V + ++FA + + F+E SA + NVE+AF+ A I
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 117/165 (70%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y YLFK ++IG++GVGKSCLLL+F+D + + TIGV+F + + +D K +KLQIWDT
Sbjct: 18 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + + +L+GNKCD
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
L +R V + ++FA + + F+E SA + NVE+AF+ A I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+ K ++IGD+GVGKSCLL++F + +F P TIG++F + + I+ K +KLQIWDTAGQ
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
E FR+IT +YYRGA G +LVYDIT TF ++ W + +HAN ++L+GNK D+
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 121
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
R V+ ++GE AKE G+ F+E+SAK NV E F A I +KI
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+ K ++IGD+GVGKSCLL++F + +F P TIG++F + + I+ K +KLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
E FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++L+GNK D+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
R V+ ++GE AKE G+ F+E+SAK NV E F A I +KI
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+ K ++IGD+GVGKSCLL++F + +F P TIG++F + + I+ K +KLQIWDTAGQ
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
E FR+IT +YYRGA G +LVYDIT TF ++ W + +HAN ++L+GNK D
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XE 121
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
R V+ ++GE AKE G+ F+E+SAK NV E F A I +KI
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+ K ++IGD+GVGKSCLL++F + +F P TIG++F + + I+ K +KLQ+WDTAGQ
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
E FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++L+GNK D
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XE 121
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
R V+ ++GE AKE G+ F+E+SAK NV E F A I +KI
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 111/169 (65%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y ++FK ++IG++GVGK+ LL +FT F TIGVEF R + + +K QIWDT
Sbjct: 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ HA A + +ML+GNK D
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L+ R V TEE FA+ +GL+F+E SA + NVE AF I+ K+
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 110/165 (66%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y +LFK ++IG+ GVGK+CL+ +FT F P TIGV+F + + I+ + +KLQIWDT
Sbjct: 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FRSIT+SYYR A +L YDIT E+F L WL + Q+A+ + +L+GNK D
Sbjct: 83 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
LA RR VS + E+F++ + ++E SAK + NVE+ F+ A +
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWD 61
Y FK +++GD+GVGK+CLL++F D F + T+G++F +++ +D +KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE FRS+T +YYR A LL+YD+T + +F+++ +WL + ++A ++ +ML+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
D AH R V E+GE+ AKE+GL FME SAKT NV+ AF A + ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 111/169 (65%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y ++FK ++IG++GVGK+ LL +FT F TIGVEF R + + +K QIWDT
Sbjct: 7 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ HA A + +ML+GNK D
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
L+ R V TEE FA+ +GL+F+E SA + NVE AF I+ K+
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y +LFK +++GD VGK+C++ +F F TIGV+F + + I K +KLQIWDT
Sbjct: 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT+SYYR A GA+L YDIT+R +F + W+ED R++A +N+ +LIGNK D
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 123 LAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATI 167
L+ R VS E + A+ + ++ +E SAK + NVEEAF++ A +
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
++ Y+FK +IIG++ VGK+ L ++ D F P T+G++F + I ++K IKLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N ++L+GNKC
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
D+ R VS+E G Q A G F EASAK NV++ F + I +K
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++D KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAH 125
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + N + L+GNK D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYG 184
R V EG +FA++H +F+EASAKT V+ AF + I + G+++ N++ G
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ--TPGLWESENQNSG 191
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 109/172 (63%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
++ Y+FK +IIG++ VGK+ L ++ D F P T+G++F + + K +KLQIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N ++L+GNKC
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
D+ R V TE+G+ A++ G F EASAK +V +AF + I K+ D
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
Y +LFK +IIGD+GVGKS LLL+F D F + TIGV+F R + I+ + +KLQIWDT
Sbjct: 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AGQE FR+IT +YYRG G ++VYD+T E+F ++ WL + Q+ + ++ +L+GNK D
Sbjct: 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R+ V TE+ +FA + G+ E SAK NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +ETF +W+++ ++ A+ ++ I L GNK DLA++
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
R V EE + +A ++ L+FME SAKTA NV + F+ A + K
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 152 bits (385), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 105/158 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +TF +W+++ ++ A+ N+ I L GNK DLA +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
RAV +E + +A ++ L+FME SAKTA NV E F+ A
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 105/173 (60%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
+ Y FK +IIG++ VGK+ L ++ D F P T+G++F + I ++K IKLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
AG E +R+IT +YYRGA G +L YDIT E+FN + W + ++ N ++L+GNKCD
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 175
R VS+E G Q A G F EASAK NV++ F + I +K + +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESL 177
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
+ + IIIG GVGK+ L+ +FTD F T+GV+F + + + K I+LQIWDTAG
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
QE F SIT +YYR A G +LVYDIT++ETF+ L W++ ++A+ + ++L+GNK D
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 125 HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
R ++ ++GE+FA++ G+ F EASAK NV+E F+K I KK+
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 107/161 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ I+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R +A A++VYDIT +F W++D R +++ IML+GNK DLA +
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 106/169 (62%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
Y+FK ++IG++ VGK+ L ++ D F P T+G++F + + +K IKLQIWDTAG
Sbjct: 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
QE +R+IT +YYRGA G LL+YDI +E+F + W + ++ N ++L+GNKCDL
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
R V E+G + A + G F EASAK NV++ F + I +K+ +
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 107/163 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+FME SAKT+ NV E F+ A + K
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 108/161 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F + W++D R +++ IML+GNK DLA +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R ++ EEGEQ AKE ++F+E SAKT NV++ F + A+ +
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 106/163 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
RAV +E + +A ++ L+F E SAKT+ NV E F A + K
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 109/161 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F+ + W++D R +++ IML+GNK DL+ +
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 102/157 (64%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD G GKS L+L+F +F + TIG F ++ + +++ +K +IWDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
+ S+ YYRGAA A++V+D+T + +F W+++ + N NM + L GNK DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
V+ E+ + +A+E+GL FME SAKTA NV+E F + A
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TI F + + +D+ +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +TF +W+++ ++ A+ N+ I L GNK DLA +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
RAV +E + +A ++ L+FME SAKTA NV E F+ A
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + + +D+ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +TF +W+++ ++ A+ N+ I L GNK DLA +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
RAV +E + +A ++ L+FME SAKTA NV E F+ A
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 106/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F W++D R +++ IML+GNK DLA +
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ I+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R +A A++VYDIT +F W++D R +++ IML+GNK DLA +
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 105/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F W++D R +++ IML+GNK DLA +
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 105/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F W++D R +++ IML+GNK DLA +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R VS EEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 88/115 (76%)
Query: 10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE FR
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCDL
Sbjct: 62 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 99/161 (61%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K ++GDTGVGKS ++ +F + F P + TIG F + + N+ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH ++ + + GNKCDL
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R V + + +A IF+E SAK A N+ E FI+ + I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 98/161 (60%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K ++GDTGVGKS ++ +F + F P + TIG F + + N+ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH ++ + + GNKCDL
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R V + + +A IF+E SAK A N+ E FI+ + I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 101/161 (62%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K + +G+ VGK+ ++ +F F + TIG++F ++ + +D P++LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRS+ SY R +A A++VYDIT R++F + W++D ++ I L+GNK DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R V+ EEG Q A+E+ F E SAK N++ F KTA+ +
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 5/168 (2%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S + +FK I+IGD+ VGK+CL +F RF + TIGV+F R + ID + IK+Q+WD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 62 TAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGN 119
TAGQE FR S+ + YYR + VYD+T +F+ L +W+E+ +QH AN + +L+GN
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135
Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN---VEEAFIKTA 164
KCDL V T+ ++FA H + E SAK + VE F+ A
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++G+ VGKS ++L+F F + TIG F + +TI+ +K +IWDTAGQE
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-- 125
F S+ YYR A AL+VYD+T+ ++F W+++ + A+ ++ I L+GNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 126 -RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
R V+ EEGE+ A+E GL+F E SAKT +NV + F+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K ++GDTGVGKS ++ +F F TIG F + + N+ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F S+ YYRG+A A++VYDIT++++F L W+++ ++H N+ + + GNKCDL+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R V ++ +++A+ G I +E SAK A N+EE F
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+FK I+IGD+ VGK+CL +F RF + TIGV+F R + ID + IK+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 66 ESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDL 123
E FR S+ + YYR + VYD T +F+ L +W+E+ +QH AN + +L+GNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE--EAFIKTAA 165
V T+ ++FA H E SAK + + EA T A
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLA 192
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
Y YL K + +GD+GVGK+ L ++TD +F P T+G++F + + + +
Sbjct: 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
+ LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+ ++ ANA
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYC 139
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
N I+LIGNK DL +R V+ + + A ++G+ + E SA T QNVE+A I K
Sbjct: 140 ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
Query: 170 KIQDGV 175
+++ V
Sbjct: 200 RMEQCV 205
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
Y YL K + +GD+GVGK+ L ++TD +F P T+G++F + + D +
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
+ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+ ++ ANA
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
N I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++ I K
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
Query: 170 KIQDGV 175
+++ V
Sbjct: 186 RMEKCV 191
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
Y YL K + +GD+GVGK+ L ++TD +F P T+G++F + + D +
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
+ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+ ++ ANA
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
N I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++ I K
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
Query: 170 KIQDGV 175
+++ V
Sbjct: 186 RMEKCV 191
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF-GARMITIDNKP------- 54
Y YL K++ +GD+GVGK+ +L Q+TD +F T+G++F R++ N P
Sbjct: 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 55 --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NAN 111
I LQ+WDTAG E FRS+T +++R A G LL++D+T ++F ++ +W+ + HA + N
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
I+L GNK DL +RAV EE + A+++G+ + E SA N+ A I K++
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187
Query: 172 QDGV 175
+ V
Sbjct: 188 ERSV 191
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 15/170 (8%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
Y YL K + +GD+GVGK+ L ++TD +F P T+G++F + + D +
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
+ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W ++ ANA
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159
N I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 15/170 (8%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
Y YL K + +GD+GVGK+ L ++TD +F P T+G++F + + D +
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
+ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W ++ ANA
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159
N I+LIGNK DL +R V+ + + A+++G+ + E SA T QNVE++
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S AY FK +++G+ VGK+ L+L++ + +F H T+G F + + I K + L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + ++GNK
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
DL R VS +E E +A+ G SAK + +EE F+
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + + +D++ + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
DL +R+ + ++ + + E SAK A NVE+AF A K+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + + +D++ + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
DL +R+ + ++ + + E SAK A NVE+AF A K+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K ++ GD VGKS L++ F+ T+GV+F + + +D + LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
FRSI +SY+R A G LL+YD+T ++F ++ W++ A+ + IML+GNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 127 RAVSTEE------GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
A ++ GE+ A +G +F E SAK N+ EA + A + K+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S AY FK +++G+ VGK+ L+L++ + +F H T+ F + + I K + L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + ++GNK
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
DL R VS +E E +A+ G SAK + +EE F+
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S AY FK +++G+ VGK+ L+L++ + +F H T+ F + + I K + L IWD
Sbjct: 16 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 75
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + ++GNK
Sbjct: 76 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 135
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
DL R VS +E E +A+ G SAK + +EE F+
Sbjct: 136 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 175
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + + +D++ + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
D +R+ + ++ + + E SAK A NVE+AF A K+
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + + +D++ + +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
DL +R+ + ++ + + E SAK A NVE+AF A K+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAG 64
+ K II+GD+GVGK+ L+ ++ + ++ + TIG +F + +T+D +K +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN----MTIMLIGNK 120
QE F+S+ ++YRGA +LVYD+T +F ++ SW ++ HAN N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 CDLAH-RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQ 172
D ++ VS + ++ AK G I SAK A NV+ AF + A + ++ Q
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
LFK I++GD GVGKS L+ ++ +F TIGVEF + + +D + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
E FRS+ +YRG+ LL + + ++F +L++W ++ +A+ + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
D++ R+ VSTEE + + +++G + E SAK A NV AF
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
LFK I++GD GVGKS L+ ++ +F TIGVEF + + +D + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
E FRS+ +YRG+ LL + + ++F +L++W ++ +A+ + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
D++ R+ VSTEE + + +++G + E SAK A NV AF
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
LFK I++GD GVGKS L+ ++ +F TIGVEF + + +D + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
E FRS+ +YRG+ LL + + ++F +L++W ++ +A+ + +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
D+ R+ VSTEE + + K++G + E SAK + NV AF
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++G+ VGKS ++ ++ F + TIGV+F R I ++++ ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F +IT++YYRGA +LV+ T RE+F ++SW E ++ L+ NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
+ EE E AK L F S K NV E F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Query: 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
+ L K I++GD GVGKS L+ ++ +F TIGVEF R + +D + + LQIWDTA
Sbjct: 5 SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGN 119
GQE F+S+ +YRGA LL + + R++F +L +W ++ +A+ + +++GN
Sbjct: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGN 124
Query: 120 KCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
K D R V+TEE + + E+G ++E SAK NV AF
Sbjct: 125 KVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
E + +I +Y+R G L V+ IT E+F A + E R + N+ +L+GNK DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
+R VS EE + A++ + ++E SAKT NV++ F I +K++D
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
E + +I +Y+R G L V+ IT E+F A + E R + N+ +L+GNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
+R VS EE + A++ + ++E SAKT NV++ F I +K++D
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
E + +I +Y+R G L V+ IT E+F A + E R + N+ +L+GNK DL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
+R VS EE + A++ + ++E SAKT NV++ F I +K++D
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
E + +I +Y+R G L V+ IT E+F A + E R + N+ +L+GNK DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
+R VS EE + A + + ++E SAKT NV++ F
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + + +D + L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++L+GNKCDL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 126 RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
R V E+G+ A++ + F+E+SAK+ NV E F
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIW 60
S+ K +++GD GK+ L F + F + TIG++F R IT+ N + LQIW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLI 117
D GQ + Y GA G LLVYDIT ++F +L W ++ + + + L+
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
GNK DL H R + E+ +F +E+G SAKT +V F K AA I
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDL 123
E + +I +Y+R G LLV+ IT E+F A + E R A + + ++++GNK DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
RR V EE A+E G+ ++E SAKT NV++ F I K
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDL 123
E + +I +Y+R G LLV+ IT E+F A + E R A + + ++++GNK DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
RR V EE A+E G+ ++E SAKT NV++ F I K
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + + +D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++L+GNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 126 RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
R V E+G+ A++ + F+E+SAK+ NV E F
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + + ID + L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
R V T++ + A+ +G+ F+E SAKT Q V++AF I K
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 10/175 (5%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
M+ + K I G GVGKS L+++F KRF +D T+ + TID++ + ++I
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEIL 81
Query: 61 DTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIML 116
DTAGQE +I R + R G +LVYDIT R +F L + L++ ++ N +T++L
Sbjct: 82 DTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLIL 137
Query: 117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 170
+GNK DL H R VSTEEGE+ A E F E SA T + N+ E F + + ++
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + +++ +D + +++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
E + +I +Y+R G L V+ IT E+F A + E R + N+ +L+GNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
+R VS EE + A++ + ++E SAKT NV++ F I +K++D
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + + ID + L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + + ID + L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 40/202 (19%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT----------------- 49
+K +++G++ VGKS ++L+ T F + TIG F ++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 50 -----------IDNK---------PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89
I N+ IK IWDTAGQE + SI YYRGA A++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 90 RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149
T + +W+ + ++N I+L+ NK D ++ V E +++A+++ L+F++ S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 150 AKTAQNVEEAFIKTAATIYKKI 171
AKT N++ F A IYK I
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + + ID + L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + + ID + L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R V + + + A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + + +D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++L+GNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAF 160
R V E+G+ A++ F+E+SAK+ NV E F
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + + +D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++L+GNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAF 160
R V E+G+ A++ F+E+SAK+ NV E F
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF F +D TI + + + ID++ +L I DTAGQE F ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 79 AAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G LLV+ +T R +F + + R ++LIGNK DL H+R V+ EEG+Q
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
A++ + +MEASAK NV++AF + I K
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
MS + K + +GD VGK+C+L+ +T +F + T+ F A + +D + + L +W
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLW 62
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGN 119
DTAGQE + + YRGA +L + + + ++ N L W+ + R+ A N+ I+L+G
Sbjct: 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121
Query: 120 KCDLA--------HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
K DL H +++ +GE+ K+ G ++E S+KT QNV+ F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + + ID + L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E ++ ++ ++ ++L+GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
R V T++ + A+ +G+ F+E SAKT Q V++AF I K
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
MS + K + +GD VGK+C+L+ +T F + T+ F A ++ +D + L +W
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLW 59
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119
DTAGQE + + YRGA +L + + + ++ ++A W+ + R +A + I+L+G
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
Query: 120 KCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
K DL + ++T +GE+ K G I++E S+KT QNV+ F
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMITIDNKPIKLQIWDTAGQ 65
+K +IGD GVGK+ + + D RF+ ++ T+G V + IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
E + YY GA+GA+L +D+T R T +LA W+++ + I++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
R+ +S + + K + E SAKTA N F+ A I+ D +F VSN
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL-ARIFTGRPDLIF-VSN 184
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
+ + + F ++ L + + SAK+ N E+ F+ A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
+ + + F ++ L + + SAK+ N E+ F+ A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 123 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 158
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
MS A K + +GD VGK+C+L+ +T F + T+ F A ++ +D + L +W
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGN 119
DTAGQE + + YRGA LL + + + ++ ++ WL + + +A + I+L+G
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGT 118
Query: 120 KCDLAHRR----------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
K DL + +++T +GE+ K G + ++E S+KT QNV+ F
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++ +D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF F +D TI + ++ ++D P +L I DTAGQE F ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 79 AAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G LLV+ I R++FN + + + R + ++L+GNK DL +R V E F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
H + + EASAK NV+EAF + + K
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
+ + + F ++ L + + SAK+ N E+ F+ A +
Sbjct: 126 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 132 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 167
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + + + T+GVE + + PIK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+G VGK+ L QF + F +D T+ + ++++T+ L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHR 126
+ + S+ G G +LVY +T +F + S + + H + ++L+GNK DL+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
R V EG++ A+ G FME+SA+ Q + F K I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ +++ + ++L+GNKCDL R V T++ +
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHEL 151
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
AK +G+ F+E SAKT Q VE+AF
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAF 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + TIGVE + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 160
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + TIGVE + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
+ + + F ++ L + + SAK+ N E+ F+ A
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 159
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAF 163
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S A K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WD
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
TAGQE + + Y L+ + I ++ ++ +H N+ I+L+GNK
Sbjct: 64 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 123
Query: 122 DL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
DL H R V EEG A G +ME SAKT V E F
Sbjct: 124 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 68
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAF 161
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + TIGVE + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
+ + + F ++ L + + SAK+ N E+ F+
Sbjct: 132 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F P +D TI + + IDN+ L + DTAGQE F ++ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79 AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L+VY +T + +F H+ + + R + ++L+ NK DL H R V+ ++G++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
A ++ + ++E SAK NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F P +D TI + + IDN+ L + DTAGQE F ++ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 79 AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L+VY +T + +F H+ + + R + ++L+ NK DL H R V+ ++G++
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
A ++ + ++E SAK NV++ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F +D TI F ++IT++ + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IML+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GN+CDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F +D TI F ++IT++ + LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IML+GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 119
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
MS + K + +GD VGK+CLL+ +T F + T+ F A ++ ++ + L +W
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLW 61
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119
DTAGQE + + YRGA +L + + + ++ +++ W+ + + +A + I+L+G
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120
Query: 120 KCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
K DL + ++T +GE+ K G ++E S+K+ +NV+ F
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D +I + + + ID + L I DTAGQE + ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAF 162
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D +I + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F +D TI F ++IT++ + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IML+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
K+ L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDL R V T++ +
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR-TVDTKQAQDL 151
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
A+ +G+ F+E SAKT Q V++AF I K
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DT GQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG+E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DT GQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y +L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y +L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y +L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 125 HRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
H R V +EEG A ++E SAKT + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
++ + G GVGKS L+L+F F+ + T+ + ++I+ D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 124
F ++ R +LVY IT R++ L E + ++ IML+GNKCD +
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R V + E E A+ FME SAK NV+E F
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y +L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 9/177 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITIDNKPIKLQIW--DTA 63
K ++G+ VGKS L+ FT K +F + +T GVE +TI + + ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNK 120
G + ++ Y+ G A+LV+D++ E+F +W E AR + +L+ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 121 CDLAHRR-AVSTEEGEQFAKEHGLIFMEASAKTA-QNVEEAFIKTAATIYKKIQDGV 175
DL +R V + + +A + L F + SA ++ + F+ A T Y+ +D V
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 125 HRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
H R V +EEG A ++E SAKT + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-- 125
+ Y L+ + I ++ ++ +H N+ I+L+GNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 ----------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ V EG A G +ME SAKT V E F
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F D TI F ++IT++ + LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IML+GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 122
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
R +S EEG+ A+ F+E+SAK Q + F
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAF 161
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNKCDLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNK DL R V T++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
A+ +G+ F+E SAKT Q V++AF I K
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ ++ ++ ++L+GNK DL R V T++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
A+ +G+ F+E SAKT Q V++AF I K
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124
E + + Y L+ + + +F+H+ A W + R H N I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124
E + + Y L+ + + +F+H+ A W + R H N I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124
E + + Y L+ + + +F+H+ A W + R H N I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ +++ + ++L+GNK DLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F +D TI + + IDN+ L + DTAGQE F ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79 AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L+VY +T + +F H+ + + R + ++L+ NK DL H R V+ ++G++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
A ++ + ++E SAK NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F +D TI + + IDN+ L + DTAGQE F ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79 AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L+VY +T + +F H+ + + R + ++L+ NK DL H R V+ ++G++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
A ++ + ++E SAK NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD G GK+ LL+ F D F + T+ + + + KP+ L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDD 94
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
+ + +Y A+ LL +D+T +F+++ + H + I+++G K DL +
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 128 A------------VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTA 164
+ V+ G++ A+ G + ++E SA+ NV F + A
Sbjct: 155 SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F D TI + + + ID + L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ +++ + ++L+GNK DLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
H R V EEG A G +ME SAKT V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 125 HRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
H R V +EEG A ++E SAKT + V E F
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF F +D TI +F + I +D+ P L+I DTAG E F S+ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
G +LVY + +++F + + R + ++L+GNK DL R VS+ EG
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+E G FME SAK+ V+E F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H N I+L+G K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G AKE G + ++E SA T + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H + I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G A+E G + ++E SA T + ++ F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTA QE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ +++ + ++L+GNK DLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + + ID + L I DTA QE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
G L V+ I ++F + + E ++ +++ + ++L+GNK DLA R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H + I+L+G K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G A+E G + ++E SA T + ++ F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + +F ++ A W + R H + I+L+G K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
+ ++ +G A+E G + ++E SA T + ++ F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD GK+CLL+ F+ F V+ T+ + A I +D K ++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + ++ ++ W+ + + H N+ I+L+ NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 124 AHRR---------AVSTEEGEQFA-KEHGLIFMEASAKTAQNVEEAF-IKTAATIYKK 170
H R V T++G A + ++E SAKT + V E F T A + K+
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D+KP+ L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + ++ ++ A W + R H + I+L+G K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 126 RR------------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
+ ++ +G AKE + ++E SA T + ++ F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D+KP+ L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + ++ ++ A W + R H + I+L+G K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 126 RR------------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
+ ++ +G AKE + ++E SA T + ++ F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D KP+ L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRR-------ETF-------------NHLASWLEDARQ 106
+ + Y G DIT R + F N A W + R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 107 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 153
H N I+L+G K DL + ++ +G AKE G + ++E SA T
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 154 QNVEEAF 160
+ ++ F
Sbjct: 184 RGLKTVF 190
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
L++ +++GD GVGK+ L F K+ + +H+ +G + R +T+D + L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 66 ESF-RSITR-SYYRGAAGALLVYDITRRETFNHLASW-LEDARQHANANMTIMLIGNKCD 122
E +S ++ S +G + ++VY I R +F + ++ R H ++ I+L+GNK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
LA R VS EEG A F+E SA NV E F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A ++ +D+KP+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
+ + Y L+ + + ++ ++ A W + R H + I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
+ ++ +G AKE + ++E SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLLL F+ + T+ F + ++ N+ L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ + Y + LL + + R +F+++++ E +H +L+G K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142
Query: 127 RA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 168
+ V+ +EG+ ++ G + ++EAS+ + E F K+ I+
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLLL F+ + T+ F + ++ N+ L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
+ + Y + LL + + R +F+++++ E +H +L+G K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 141
Query: 127 RA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 168
+ V+ +EG+ ++ G + ++EAS+ + E F K+ I+
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+ L++ +T + P + + + ++++D +P++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
F + Y LL + + +F +++ W+ + R H I+L+G + DL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
+ V E + A+E ++E SA T +N++E F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
A + K +++GD VGK+CLL+ + + F + T+ + A +T+ K L ++DTA
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTA 74
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCD 122
GQE + + Y L+ + + +F ++ W+ + +++A N+ +LIG + D
Sbjct: 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133
Query: 123 L------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
L + + E+G++ AKE G ++E SA T + ++ F
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
I+G G GKS L ++F KRF +D + + + T+D++P+ L++ DTA ++ R+
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRN 84
Query: 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRR 127
R Y A L+VY + R++F+ +S+LE HA ++ +L+GNK D+A R
Sbjct: 85 CER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR 143
Query: 128 AVSTEEGEQFAKEHGLIFMEASA 150
V+ EG A G +F E SA
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSA 166
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +D + ++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH- 125
+ + Y + L+ + I ++ ++ W+ + H + I+L+G K DL +
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 126 -----------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
++ V+++EG+ A + G + E SAKT V E F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
KS L+L+F F+ + TI + ++I+ D LQI DT G F ++ R
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 79 AAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTEEGEQ 136
+LV+ +T +++ L + Q + ++ +ML+GNKCD +R V T E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 137 FAKEHGLIFMEASAKTAQNVEEAF 160
A+E FME SAK NV+E F
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELF 162
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+FK +++G++GVGKS L F + H+ + R I +D + + L ++D Q
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 66 ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDL 123
R + A L+V+ +T R +F+ + L R + ++ ++L+GNK DL
Sbjct: 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
A R VS EEG A +E SA N E F
Sbjct: 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD+ GK+ LL F F + T+ + A ID + I+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
+ ++ Y + L+ +DI+R ET + + + Q N ++L+G K DL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 124 -------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATIYK 169
HR+ VS ++G AK+ G ++E SA ++N V + F + T A + K
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD+ GK+ LL F F + T+ + A ID + I+L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
+ ++ Y + L+ +DI+R ET + + + Q N ++L+G K DL
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 124 -------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATIYK 169
HR+ VS ++G AK+ G ++E SA ++N V + F + T A + K
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD+ GK+ LL F F + T+ + A ID + I+L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
+ ++ Y + L+ +DI+R ET + + + Q N ++L+G K DL
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 124 -------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATIYK 169
HR+ VS ++G AK+ G ++E SA ++N V + F + T A + K
Sbjct: 144 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+FK +++G++GVGKS L F + H++ + R I +D + + L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66 ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDL 123
+ + A L+V+ +T R +F+ + L R + ++ ++L+GNK DL
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
A R VS EEG A +E SA N E F
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+FK +++G++GVGKS L F + H++ + R I +D + + L ++D Q
Sbjct: 12 VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 66 ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDL 123
+ + A L+V+ +T R +F+ + L R + ++ ++L+GNK DL
Sbjct: 72 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 131
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
A R VS EEG A +E SA N E F
Sbjct: 132 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLA- 124
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 125 -----------HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP 54
M+Y ++ ++IG+ GVGKS L F VHD +G + R + +D +
Sbjct: 4 MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55 ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHA 108
I L +W+ G+ + + + L+VY IT R +F + L L ARQ
Sbjct: 56 ATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
++ I+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S+ K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 60
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNK 120
TAGQE + + Y L+ + + +F ++ W+ + H +L+G +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQ 119
Query: 121 CDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
DL ++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S+ K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++D
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 59
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNK 120
TAGQE + + Y L+ + + +F ++ W+ + H +L+G +
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQ 118
Query: 121 CDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
DL ++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
S+ K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 60
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNK 120
TAGQE + + Y L+ + + +F ++ W+ + H +L+G +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQ 119
Query: 121 CDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
DL ++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP 54
M+Y ++ ++IG+ GVGKS L F VHD +G + R + +D +
Sbjct: 4 MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55 ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHA 108
I L +W+ G+ + + + L+VY IT R +F + L L ARQ
Sbjct: 56 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
++ I+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD GK+ +L + + T+ + A + T + + ++L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 70
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
+ ++ Y + LL +DI+R ET + L W + + + ++LIG K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 129
Query: 123 ------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
L+H++ +S E+G AK+ G I++E SA T++ + +TA+ +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 183
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD GK+ +L + + T+ + A + T + + ++L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 87
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
+ ++ Y + LL +DI+R ET + L W + + + ++LIG K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 146
Query: 123 ------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
L+H++ +S E+G AK+ G I++E SA T++ + +TA+ +
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD GK+ +L + + T+ + A + T + + ++L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 71
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
+ ++ Y + LL +DI+R ET + L W + + + ++LIG K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 130
Query: 123 ------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
L+H++ +S E+G AK+ G I++E SA T++ + +TA+ +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 184
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP---IKL 57
++ ++IG+ GVGKS L F VHD +G + R + +D + I L
Sbjct: 38 YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANMTI 114
+W+ G+ + + + L+VY IT R +F + L L ARQ ++ I
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 148
Query: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F P + + A + I +P L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP---IKL 57
++ ++IG+ GVGKS L F VHD +G + R + +D + I L
Sbjct: 7 YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANMTI 114
+W+ G+ + + + L+VY IT R +F + L L ARQ ++ I
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 117
Query: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
+L+GNK DL R VS EG A F+E SA NV+E F
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T + + T+ + A + I +P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA----------RMITI 50
MS ++K +++G GVGKS L F GVE G R I +
Sbjct: 2 MSDESVYKVLLLGAPGVGKSALARIFG------------GVEDGPEAEAAGHTYDRSIVV 49
Query: 51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQH 107
D + L ++D Q+ R + ++VY +T + +F + L L ARQ
Sbjct: 50 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ- 108
Query: 108 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
++ I+L+GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 109 -TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
+ + Y L+ + + +F ++ W+ + H +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA----------RMITIDNKPI 55
++K +++G GVGKS L F GVE G R I +D +
Sbjct: 2 VYKVLLLGAPGVGKSALARIFG------------GVEDGPEAEAAGHTYDRSIVVDGEEA 49
Query: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANM 112
L ++D Q+ R + ++VY +T + +F + L L ARQ ++
Sbjct: 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDV 107
Query: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
I+L+GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA----------RMITIDNKPI 55
++K +++G GVGKS L F GVE G R I +D +
Sbjct: 7 VYKVLLLGAPGVGKSALARIFG------------GVEDGPEAEAAGHTYDRSIVVDGEEA 54
Query: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANM 112
L ++D Q+ R + ++VY +T + +F + L L ARQ ++
Sbjct: 55 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDV 112
Query: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
I+L+GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 113 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L +F + TI G + T++++ KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
S RS R+Y+ G + V D R+ L S L + R A T+++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 LA 124
L
Sbjct: 131 LP 132
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L +F + TI G + T++++ KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDID-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
S RS R+Y+ G + V D R+ L S L + R A T+++ NK D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 128
Query: 123 LA 124
L
Sbjct: 129 LP 130
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L +F + TI G + T++++ KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
S RS R+Y+ G + V D R+ L S L + R A T+++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 LA 124
L
Sbjct: 131 LP 132
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 8 KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMITIDNK---PIKLQIWDT 62
K I+G+TG GK+ LL Q T K T+G++ I I +K + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKC 121
AG+E F S + A L VYD+++ + + WL + + A+++ ++L+G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 122 DLA---HRRAVSTEEGEQFAKEHGL 143
D++ R+A ++ ++ + G
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGF 145
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
+ + +++G GK+ +L +F + TI G + T++++ KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKC 121
+S RS R+Y+ G + V D R+ L S L + R A T+++ NK
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQ 112
Query: 122 DLA 124
DL
Sbjct: 113 DLP 115
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 8 KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMITIDNK---PIKLQIWDT 62
K I+G+TG GK+ LL Q T K T+G++ I I +K + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKC 121
AG+E F S + A L VYD+++ + + WL + + A+++ ++L+G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 122 DLA---HRRAVSTEEGEQFAKEHGL 143
D++ R+A ++ ++ + G
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGF 147
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K II+G GK+ +L QF+ + VH TIG I I+N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 71
Query: 67 SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
S RS +YY ++V D +TR E + LA ED R+ +++
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 124
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
NK D+ + ++ E QF K
Sbjct: 125 NKQDV--KECMTVAEISQFLK 143
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K II+G GK+ +L QF+ + VH TIG I I+N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 71
Query: 67 SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
S RS +YY ++V D +TR E + LA ED R+ +++
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 124
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
NK D+ + ++ E QF K
Sbjct: 125 NKQDV--KECMTVAEISQFLK 143
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR 77
GK+ +L +F + TI G + T++++ KL IWD GQ+S RS R+Y+
Sbjct: 30 GKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 78 GAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCDLA 124
G + V D R+ L S L + R A T+++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERL---AGATLLIFANKQDLP 132
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K II+G GK+ +L QF+ + VH TIG I I+N + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 76
Query: 67 SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
S RS +YY ++V D +TR E + LA ED R+ +++
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 129
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
NK D+ + ++ E QF K
Sbjct: 130 NKQDV--KECMTVAEISQFLK 148
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
K II+G GK+ +L QF+ + VH TIG I I+N + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 77
Query: 67 SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
S RS +YY ++V D +TR E + LA ED R+ +++
Sbjct: 78 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 130
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
NK D+ + ++ E QF K
Sbjct: 131 NKQDV--KECMTVAEISQFLK 149
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 35 HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
D+ V F R +T N IK IWD GQ FRS+ Y RG + + D RE
Sbjct: 49 EDMIPTVGFNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 95 ----NHLASWLEDARQHANANMTIMLIGNKCDLAH 125
N L + L+ + + ++++GNK DL +
Sbjct: 107 EASRNELHNLLDKPQLQG---IPVLVLGNKRDLPN 138
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +I+G G GK+ +L R Q +T G + T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILY-----RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRE 92
S R R YY A + V D T ++
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKD 99
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
K II+G GK+ +L QF + VH G+ + I K +WD GQES
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMN--EVVHT---SPTIGSNVEEIVVKNTHFLMWDIGGQES 72
Query: 68 FRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIGN 119
RS +YY +LV D IT+ E + LA ED R+ A +++ N
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-----VLIFAN 125
Query: 120 KCDL 123
K D+
Sbjct: 126 KQDM 129
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 35 HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
D+ V F R IT N IKL WD GQ FRS+ Y RG + + + D +E
Sbjct: 49 EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106
Query: 95 ----NHLASWLEDARQHANANMTIMLIGNKCDLA 124
N L + L+ + + ++++GNK DL
Sbjct: 107 EASKNELHNLLDKPQLQG---IPVLVLGNKRDLP 137
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 35 HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
D+ V F R IT N IKL WD GQ FRS+ Y RG + + + D +E
Sbjct: 58 EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
Query: 95 ----NHLASWLEDARQHANANMTIMLIGNKCDLA 124
N L + L+ + + ++++GNK DL
Sbjct: 116 EASKNELHNLLDKPQLQG---IPVLVLGNKRDLP 146
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 377
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 435
Query: 124 A 124
Sbjct: 436 P 436
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNICFTVWDVGGQD 84
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
R + R Y++ G + V D RE A L+ Q ++L+ NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 126 RRAVSTEEGEQFAKEH 141
VS E ++ +H
Sbjct: 145 AMPVS-ELTDKLGLQH 159
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 67
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 125
Query: 124 A 124
Sbjct: 126 P 126
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126
Query: 124 A 124
Sbjct: 127 P 127
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113
Query: 124 A 124
Sbjct: 114 P 114
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113
Query: 124 A 124
Sbjct: 114 P 114
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + +T G + T+ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YYR G + V D R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + +T G + T+ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YYR G + V D R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + V +T G + T+ K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKL---KLGEV--ITTIPTIGFNVETVQYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YYR G + V D R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
+ + +G GK+ +L + K Q V + V F +T N +K +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQDK 56
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLA 124
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDA--IILIFANKQDLP 114
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +I+G G GK+ +L R Q +T G + T+ K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQT 57
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
S R R YY + V D R+ S L + I+++ NK D+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
G + T++ K I +WD GQ+ R + + Y++ G + V D RE +A L+
Sbjct: 49 IGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQ 108
Query: 103 -----DARQHANANMTIMLIGNKCDLAHRRAVS 130
D + A ++L NK DL + A+S
Sbjct: 109 KMLLVDELRDA----VLLLFANKQDLPNAMAIS 137
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 220
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
R + R Y++ G + V D RE N L ED + A +++ NK
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 276
Query: 122 DLAH 125
DL +
Sbjct: 277 DLPN 280
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 71
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
R + R Y++ G + V D RE N L ED + A +++ NK
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 127
Query: 122 DLAH 125
DL +
Sbjct: 128 DLPN 131
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
R + R Y++ G + V D RE N L ED + A +++ NK
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 111
Query: 122 DLAH 125
DL +
Sbjct: 112 DLPN 115
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
R + R Y++ G + V D RE N L ED + A +++ NK
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 128
Query: 122 DLAH 125
DL +
Sbjct: 129 DLPN 132
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGLD 58
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 116
Query: 124 A 124
Sbjct: 117 P 117
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGLD 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126
Query: 124 A 124
Sbjct: 127 P 127
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V + V F +T N +K +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGLD 57
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
R + R YY G G + V D R+ + L + R+ +A I++ NK DL
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 115
Query: 124 A 124
Sbjct: 116 P 116
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 44 GARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED 103
G + T++ + I +WD GQ+ R + R YY G + V D RE ++D
Sbjct: 50 GFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDD 102
Query: 104 ARQHAN--------ANMTIMLIGNKCDLAH 125
AR+ + + I++ NK DL +
Sbjct: 103 AREELHRMINEEELKDAIILVFANKQDLPN 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
R + R YY+ + V D R+ L I+L+ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 126 RRAVS 130
++S
Sbjct: 133 AMSIS 137
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +I+G G GK+ +L R Q +T G + T+ K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 59
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
S R R YY + V D R+ S L + I+++ NK D+
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
+ +I+G G GK+ +L R Q +T G + T+ K +K Q+WD G S
Sbjct: 9 RILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRE 92
R R YY + V D R+
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGLD 57
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
R + R Y++ G + V D RE N L ED + A +++ NK
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 113
Query: 122 DLAH 125
DL +
Sbjct: 114 DLPN 117
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRE 92
R + R Y++ G + V D R+
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + V + F + N I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVECVQYCN--ISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YY G + V D R
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
+ +++G GK+ LL Q + + G + ++ ++ KL +WD GQ
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWDIGGQRK 60
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF 94
R RSY+ + V D R+ F
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
+ +++G GK+ LL Q + + G + ++ ++ KL +WD GQ
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF 94
R RSY+ + V D R+ F
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
+ +++G GK+ LL Q + + G + ++ ++ KL +WD GQ
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF 94
R RSY+ + V D R+ F
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 11 IIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMITIDN----KPIKLQIWDT 62
+IGD GK+ LL Q + F P H L + + + ++N K WD
Sbjct: 46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDF 105
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
GQE + + + ++ +L+ D +R ++ H WL ++ + I+++ NK D
Sbjct: 106 GGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKSPVIVVM-NKID 161
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
+ +++G GK+ LL Q + + G + ++ ++ KL +WD G
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWDIGGLRK 60
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF 94
R RSY+ + V D R+ F
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 49 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 108
T+ K I ++WD GQ R R Y+ + V D T R+ L
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119
Query: 109 NANMTIMLI-GNKCDL---AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
+++LI NK DL A ++ + G +++S+KT + E
Sbjct: 120 ELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITID--NKPIK 56
+S + F + +G+TG+GKS L+ + +F +P GV+ + + N +K
Sbjct: 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 57 LQIWDTAG 64
L I T G
Sbjct: 97 LTIVSTVG 104
>pdb|2CCM|A Chain A, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
pdb|2CCM|B Chain B, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
Length = 191
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 96 HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155
+L SW D ++H A T+ LI + R+ E EQ KE +++ A+ ++
Sbjct: 44 NLHSWPTDGKKHNEARATLKLIWD----GLRKYADENEDEQVTKEE---WLKMWAECVKS 96
Query: 156 VEEAFIKTAATIYKKIQDGVFDVSNES 182
VE+ ++ K + +FDV++ S
Sbjct: 97 VEKG--ESLPEWLTKYMNFMFDVNDTS 121
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 102 EDARQHANANMTIMLIGNKCDLAHRRAVST---EEGEQFAKEHGLIFMEASAKTAQNVEE 158
E+ QH N+ ++ C+ A + VS +E + AK+HG+ + SA+ +N
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA-- 231
Query: 159 AFIKTAATIYKK--IQDGVFDV 178
FIK YK I++ +FD+
Sbjct: 232 YFIKARDPKYKNATIKEVIFDM 253
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN---MTIM 115
++D +GQ +R++ YY+ + V D + R L+ H + + I+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 116 LIGNKCDLAHRRAVSTEEGEQF 137
NK DL R AV++ + Q
Sbjct: 131 FFANKMDL--RDAVTSVKVSQL 150
>pdb|2HAY|A Chain A, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
pdb|2HAY|B Chain B, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
pdb|2HAY|C Chain C, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
pdb|2HAY|D Chain D, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
Length = 224
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 38 TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYY 76
+IG+E G R + +DNKPIK +I A ++ T S++
Sbjct: 48 SIGLE-GWRFVVLDNKPIKEEIKPFAWGAQYQLETASHF 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,322,831
Number of Sequences: 62578
Number of extensions: 189658
Number of successful extensions: 1139
Number of sequences better than 100.0: 345
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 346
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)