Query 028237
Match_columns 211
No_of_seqs 120 out of 1848
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.8E-45 3.8E-50 259.7 22.4 199 3-211 6-205 (205)
2 KOG0098 GTPase Rab2, small G p 100.0 3.5E-43 7.6E-48 245.4 21.7 188 1-188 1-189 (216)
3 PLN03108 Rab family protein; P 100.0 3.3E-40 7.2E-45 246.7 27.2 210 1-210 1-210 (210)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 2.3E-41 4.9E-46 238.0 19.4 197 5-211 4-200 (200)
5 KOG0078 GTP-binding protein SE 100.0 8.5E-40 1.8E-44 234.1 22.8 174 2-175 8-181 (207)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.3E-40 1.2E-44 231.2 20.0 167 6-172 22-189 (221)
7 KOG0087 GTPase Rab11/YPT3, sma 100.0 1E-39 2.2E-44 232.8 19.9 180 2-181 10-189 (222)
8 KOG0080 GTPase Rab18, small G 100.0 1E-38 2.2E-43 217.9 18.4 168 3-170 8-176 (209)
9 PLN03110 Rab GTPase; Provision 100.0 1.6E-37 3.6E-42 233.1 26.9 207 3-211 9-215 (216)
10 cd04120 Rab12 Rab12 subfamily. 100.0 1.8E-37 3.9E-42 229.7 25.8 166 7-172 1-167 (202)
11 KOG0086 GTPase Rab4, small G p 100.0 1.5E-38 3.3E-43 215.4 17.7 190 2-191 5-194 (214)
12 cd04121 Rab40 Rab40 subfamily. 100.0 4.3E-37 9.3E-42 225.7 24.8 170 2-172 2-171 (189)
13 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-36 3.1E-41 225.9 24.4 167 7-173 1-173 (201)
14 KOG0091 GTPase Rab39, small G 100.0 2.4E-37 5.2E-42 211.7 17.6 205 3-211 5-213 (213)
15 cd04110 Rab35 Rab35 subfamily. 100.0 5.5E-36 1.2E-40 222.3 25.4 173 2-175 2-174 (199)
16 cd04144 Ras2 Ras2 subfamily. 100.0 5.4E-36 1.2E-40 220.9 22.9 166 8-174 1-169 (190)
17 cd04126 Rab20 Rab20 subfamily. 100.0 6.2E-36 1.4E-40 223.9 23.3 187 7-210 1-220 (220)
18 cd04111 Rab39 Rab39 subfamily. 100.0 2.2E-35 4.7E-40 220.8 26.2 184 5-188 1-186 (211)
19 KOG0079 GTP-binding protein H- 100.0 3.8E-37 8.3E-42 207.4 14.5 169 3-172 5-173 (198)
20 KOG0095 GTPase Rab30, small G 100.0 9.1E-37 2E-41 206.0 15.4 173 3-175 4-176 (213)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.9E-35 1.7E-39 219.1 25.8 168 4-173 11-193 (232)
22 KOG0394 Ras-related GTPase [Ge 100.0 3.5E-36 7.6E-41 210.0 16.8 170 4-173 7-183 (210)
23 cd04109 Rab28 Rab28 subfamily. 100.0 3.9E-35 8.6E-40 220.2 24.0 164 7-170 1-168 (215)
24 cd04122 Rab14 Rab14 subfamily. 100.0 4.4E-35 9.5E-40 211.6 23.3 164 6-169 2-165 (166)
25 cd04125 RabA_like RabA-like su 100.0 8.6E-35 1.9E-39 214.2 25.1 167 7-173 1-167 (188)
26 cd04112 Rab26 Rab26 subfamily. 100.0 5.4E-35 1.2E-39 215.7 23.9 165 7-171 1-166 (191)
27 KOG0093 GTPase Rab3, small G p 100.0 7.9E-36 1.7E-40 200.8 16.4 171 3-173 18-188 (193)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 1E-34 2.2E-39 209.9 22.8 166 4-169 1-166 (167)
29 cd04127 Rab27A Rab27a subfamil 100.0 2.2E-34 4.9E-39 210.5 22.9 168 3-170 1-179 (180)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.2E-34 4.8E-39 209.0 22.6 168 6-174 2-170 (172)
31 PTZ00369 Ras-like protein; Pro 100.0 2.3E-34 5E-39 212.0 22.7 168 5-173 4-172 (189)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.1E-34 1.1E-38 213.7 24.3 165 7-173 2-181 (222)
33 cd01866 Rab2 Rab2 subfamily. 100.0 7.1E-34 1.5E-38 205.7 23.7 167 3-169 1-167 (168)
34 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.2E-34 7E-39 209.5 22.0 162 4-167 3-179 (182)
35 KOG0097 GTPase Rab14, small G 100.0 2.6E-34 5.7E-39 192.7 19.3 209 2-211 7-215 (215)
36 cd04133 Rop_like Rop subfamily 100.0 2.4E-34 5.3E-39 208.9 20.9 159 7-167 2-172 (176)
37 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.1E-34 1.3E-38 205.6 22.8 164 6-169 2-165 (166)
38 cd04117 Rab15 Rab15 subfamily. 100.0 5.6E-34 1.2E-38 204.9 22.0 160 7-166 1-160 (161)
39 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-33 2.4E-38 204.1 23.4 162 7-168 2-163 (165)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-33 2.6E-38 204.0 22.3 162 7-168 1-167 (168)
41 KOG0088 GTPase Rab21, small G 100.0 3.8E-35 8.3E-40 200.0 13.2 171 4-174 11-181 (218)
42 cd04118 Rab24 Rab24 subfamily. 100.0 3.4E-33 7.4E-38 206.5 24.9 165 7-172 1-170 (193)
43 cd01875 RhoG RhoG subfamily. 100.0 1.5E-33 3.2E-38 208.0 22.8 162 6-169 3-178 (191)
44 cd01868 Rab11_like Rab11-like. 100.0 2.1E-33 4.5E-38 202.6 23.0 164 4-167 1-164 (165)
45 PF00071 Ras: Ras family; Int 100.0 1.6E-33 3.5E-38 202.5 22.3 161 8-168 1-161 (162)
46 cd04131 Rnd Rnd subfamily. Th 100.0 1.3E-33 2.8E-38 205.9 21.3 161 6-168 1-176 (178)
47 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.5E-33 5.5E-38 205.0 21.9 162 7-169 1-167 (182)
48 cd04132 Rho4_like Rho4-like su 100.0 4E-33 8.8E-38 205.1 22.7 165 7-173 1-172 (187)
49 cd01864 Rab19 Rab19 subfamily. 100.0 4.4E-33 9.6E-38 200.9 22.5 163 4-166 1-164 (165)
50 KOG0081 GTPase Rab27, small G 100.0 1.9E-35 4E-40 201.6 9.3 173 3-175 6-188 (219)
51 PLN03118 Rab family protein; P 100.0 2E-32 4.3E-37 205.1 25.6 167 3-170 11-179 (211)
52 cd04136 Rap_like Rap-like subf 100.0 4.1E-33 8.8E-38 200.5 20.9 160 7-167 2-162 (163)
53 cd04113 Rab4 Rab4 subfamily. 100.0 7.4E-33 1.6E-37 198.9 21.8 160 7-166 1-160 (161)
54 smart00175 RAB Rab subfamily o 100.0 9.8E-33 2.1E-37 198.6 22.5 163 7-169 1-163 (164)
55 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.2E-33 1.6E-37 201.6 20.9 160 6-167 1-174 (175)
56 cd04175 Rap1 Rap1 subgroup. T 100.0 8.2E-33 1.8E-37 199.3 20.9 161 7-168 2-163 (164)
57 cd04106 Rab23_lke Rab23-like s 100.0 1.4E-32 3.1E-37 197.6 21.9 159 7-166 1-161 (162)
58 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.1E-32 6.6E-37 197.4 22.9 162 8-169 2-166 (170)
59 cd00877 Ran Ran (Ras-related n 100.0 2.1E-32 4.6E-37 197.5 21.7 160 7-169 1-160 (166)
60 cd04116 Rab9 Rab9 subfamily. 100.0 3.5E-32 7.5E-37 197.1 22.7 163 3-166 2-169 (170)
61 PLN03071 GTP-binding nuclear p 100.0 1.6E-32 3.4E-37 206.4 21.3 164 4-170 11-174 (219)
62 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.1E-32 1.1E-36 196.4 22.2 162 6-167 2-168 (170)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 3.2E-32 6.9E-37 196.0 20.9 160 7-167 2-162 (163)
64 cd04140 ARHI_like ARHI subfami 100.0 6E-32 1.3E-36 195.0 21.5 158 7-165 2-162 (165)
65 cd01861 Rab6 Rab6 subfamily. 100.0 8.1E-32 1.8E-36 193.4 22.0 160 7-166 1-160 (161)
66 smart00173 RAS Ras subfamily o 100.0 6.1E-32 1.3E-36 194.7 21.4 161 7-168 1-162 (164)
67 cd01860 Rab5_related Rab5-rela 100.0 1.3E-31 2.8E-36 192.7 22.8 161 7-167 2-162 (163)
68 cd04124 RabL2 RabL2 subfamily. 100.0 8.8E-32 1.9E-36 193.4 21.8 160 7-170 1-160 (161)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.1E-31 2.4E-36 192.6 21.9 159 7-167 2-161 (162)
70 cd04134 Rho3 Rho3 subfamily. 100.0 5.5E-32 1.2E-36 199.4 20.8 161 7-169 1-175 (189)
71 cd01871 Rac1_like Rac1-like su 100.0 8.7E-32 1.9E-36 195.7 21.0 158 7-166 2-173 (174)
72 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.9E-31 4.1E-36 192.0 22.0 161 6-167 2-163 (164)
73 smart00176 RAN Ran (Ras-relate 100.0 2.1E-31 4.6E-36 197.0 21.5 156 12-170 1-156 (200)
74 cd04143 Rhes_like Rhes_like su 100.0 4.7E-31 1E-35 201.1 23.9 160 7-167 1-170 (247)
75 cd01862 Rab7 Rab7 subfamily. 100.0 6.4E-31 1.4E-35 190.7 22.7 165 7-171 1-170 (172)
76 cd04123 Rab21 Rab21 subfamily. 100.0 5.9E-31 1.3E-35 188.9 22.3 161 7-167 1-161 (162)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.2E-31 1.3E-35 189.4 22.1 160 7-167 1-163 (164)
78 cd04142 RRP22 RRP22 subfamily. 100.0 3.3E-31 7.1E-36 196.2 21.0 165 7-171 1-177 (198)
79 cd04114 Rab30 Rab30 subfamily. 100.0 2.1E-30 4.5E-35 187.5 23.3 167 1-167 1-168 (169)
80 cd01863 Rab18 Rab18 subfamily. 100.0 1.2E-30 2.6E-35 187.3 21.8 159 7-166 1-160 (161)
81 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-30 3E-35 188.5 21.8 161 7-168 2-164 (168)
82 smart00174 RHO Rho (Ras homolo 100.0 7.3E-31 1.6E-35 190.8 19.7 158 9-168 1-172 (174)
83 cd01892 Miro2 Miro2 subfamily. 100.0 6.3E-31 1.4E-35 190.4 18.9 162 5-168 3-166 (169)
84 cd00154 Rab Rab family. Rab G 100.0 2.1E-30 4.6E-35 184.9 21.4 159 7-165 1-159 (159)
85 cd01873 RhoBTB RhoBTB subfamil 100.0 8.7E-31 1.9E-35 193.3 19.5 158 6-166 2-194 (195)
86 cd04146 RERG_RasL11_like RERG/ 100.0 9.2E-31 2E-35 188.8 19.0 160 8-168 1-164 (165)
87 cd04148 RGK RGK subfamily. Th 100.0 2.8E-30 6.1E-35 194.4 22.0 164 7-172 1-167 (221)
88 cd04103 Centaurin_gamma Centau 100.0 2E-30 4.3E-35 185.6 20.1 153 7-166 1-157 (158)
89 KOG4252 GTP-binding protein [S 100.0 5.2E-33 1.1E-37 193.3 6.1 195 2-197 16-211 (246)
90 cd04135 Tc10 TC10 subfamily. 100.0 3.4E-30 7.4E-35 187.3 20.3 159 7-167 1-173 (174)
91 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.1E-30 1.5E-34 185.6 20.7 157 7-165 1-171 (173)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-29 2.4E-34 182.6 21.5 162 7-169 1-163 (164)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 6.2E-32 1.3E-36 179.4 6.8 161 11-171 2-163 (192)
94 cd00876 Ras Ras family. The R 100.0 2.3E-29 4.9E-34 180.2 20.5 158 8-166 1-159 (160)
95 PLN00223 ADP-ribosylation fact 100.0 1.8E-29 3.9E-34 184.6 18.0 159 5-170 16-180 (181)
96 cd04147 Ras_dva Ras-dva subfam 100.0 5.3E-29 1.1E-33 184.8 20.5 160 8-168 1-163 (198)
97 cd04137 RheB Rheb (Ras Homolog 100.0 1.7E-28 3.8E-33 179.3 22.7 163 7-170 2-165 (180)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.2E-29 1.4E-33 182.2 20.2 165 6-173 3-175 (183)
99 cd04149 Arf6 Arf6 subfamily. 100.0 2.5E-29 5.5E-34 181.8 17.5 154 5-165 8-167 (168)
100 cd01870 RhoA_like RhoA-like su 100.0 1.1E-28 2.3E-33 179.6 20.9 159 7-167 2-174 (175)
101 cd04158 ARD1 ARD1 subfamily. 100.0 3.7E-29 8.1E-34 181.1 17.4 156 8-170 1-163 (169)
102 KOG0395 Ras-related GTPase [Ge 100.0 9.6E-29 2.1E-33 181.6 19.7 166 6-172 3-169 (196)
103 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 7.3E-30 1.6E-34 183.9 13.6 153 8-165 1-163 (164)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.4E-29 1.4E-33 178.1 17.2 152 7-165 1-158 (159)
105 smart00177 ARF ARF-like small 100.0 2.4E-29 5.1E-34 183.1 15.2 156 5-167 12-173 (175)
106 cd04129 Rho2 Rho2 subfamily. 100.0 3.2E-28 6.9E-33 179.0 20.8 162 7-170 2-175 (187)
107 cd00157 Rho Rho (Ras homology) 100.0 4.2E-28 9E-33 175.7 20.5 157 7-165 1-170 (171)
108 PTZ00133 ADP-ribosylation fact 100.0 2.8E-28 6.1E-33 178.5 19.4 160 5-171 16-181 (182)
109 PTZ00132 GTP-binding nuclear p 100.0 1.3E-27 2.9E-32 179.5 23.1 166 2-170 5-170 (215)
110 cd04154 Arl2 Arl2 subfamily. 100.0 3.7E-28 8.1E-33 176.5 18.3 155 4-165 12-172 (173)
111 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.2E-27 2.5E-32 177.0 20.4 148 7-154 1-176 (202)
112 cd01893 Miro1 Miro1 subfamily. 100.0 2.2E-27 4.7E-32 171.4 19.3 159 7-168 1-164 (166)
113 cd04157 Arl6 Arl6 subfamily. 100.0 7E-28 1.5E-32 173.0 16.1 152 8-165 1-161 (162)
114 KOG0073 GTP-binding ADP-ribosy 100.0 3.8E-27 8.3E-32 161.8 18.1 162 3-171 13-181 (185)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.4E-27 5.2E-32 172.4 18.0 154 5-165 14-173 (174)
116 KOG0393 Ras-related small GTPa 100.0 2.8E-28 6E-33 175.6 12.8 165 4-170 2-181 (198)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 9.2E-28 2E-32 173.5 15.2 151 8-165 1-166 (167)
118 PF00025 Arf: ADP-ribosylation 100.0 2.1E-27 4.5E-32 172.7 16.6 158 3-167 11-175 (175)
119 PTZ00099 rab6; Provisional 100.0 2E-26 4.3E-31 167.4 20.6 142 29-170 3-144 (176)
120 cd00879 Sar1 Sar1 subfamily. 100.0 5.6E-27 1.2E-31 172.8 17.9 156 4-166 17-189 (190)
121 cd04160 Arfrp1 Arfrp1 subfamil 100.0 5.7E-27 1.2E-31 169.2 17.5 152 8-165 1-166 (167)
122 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.1E-27 9E-32 168.8 15.5 152 8-165 1-159 (160)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.5E-27 9.7E-32 168.3 15.0 151 8-165 1-157 (158)
124 cd04151 Arl1 Arl1 subfamily. 100.0 1.5E-26 3.3E-31 165.6 17.2 151 8-165 1-157 (158)
125 PLN00023 GTP-binding protein; 99.9 4.5E-26 9.7E-31 176.6 18.6 139 5-143 20-189 (334)
126 smart00178 SAR Sar1p-like memb 99.9 4.8E-26 1E-30 167.0 17.9 156 4-166 15-183 (184)
127 cd04159 Arl10_like Arl10-like 99.9 4.2E-26 9.1E-31 162.7 14.4 152 8-165 1-158 (159)
128 cd01890 LepA LepA subfamily. 99.9 2.7E-25 5.9E-30 162.2 17.5 154 8-167 2-176 (179)
129 PRK12299 obgE GTPase CgtA; Rev 99.9 3E-25 6.4E-30 175.5 18.7 164 6-170 158-330 (335)
130 cd01897 NOG NOG1 is a nucleola 99.9 3.2E-25 6.9E-30 160.2 17.2 156 7-167 1-167 (168)
131 cd01898 Obg Obg subfamily. Th 99.9 2.8E-25 6.1E-30 160.7 15.4 157 8-166 2-169 (170)
132 TIGR00231 small_GTP small GTP- 99.9 1.9E-24 4.1E-29 153.8 19.1 158 6-164 1-160 (161)
133 KOG0070 GTP-binding ADP-ribosy 99.9 3.3E-25 7.1E-30 156.0 13.8 158 5-169 16-179 (181)
134 cd01878 HflX HflX subfamily. 99.9 7.7E-25 1.7E-29 163.2 15.6 157 4-167 39-204 (204)
135 cd04155 Arl3 Arl3 subfamily. 99.9 3.5E-24 7.6E-29 155.5 18.5 154 5-165 13-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 1.7E-24 3.7E-29 155.5 16.6 152 7-165 1-163 (164)
137 KOG3883 Ras family small GTPas 99.9 4.7E-24 1E-28 145.0 15.8 174 5-179 8-186 (198)
138 COG1100 GTPase SAR1 and relate 99.9 2.1E-23 4.4E-28 157.1 20.7 169 6-174 5-191 (219)
139 TIGR02528 EutP ethanolamine ut 99.9 1.9E-24 4E-29 152.1 13.4 134 8-164 2-141 (142)
140 cd00882 Ras_like_GTPase Ras-li 99.9 2.6E-23 5.6E-28 146.7 18.2 153 11-164 1-156 (157)
141 cd01879 FeoB Ferrous iron tran 99.9 1.1E-23 2.3E-28 150.6 16.1 148 11-167 1-156 (158)
142 cd01891 TypA_BipA TypA (tyrosi 99.9 3.5E-24 7.6E-29 158.4 14.0 162 7-172 3-192 (194)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.7E-23 3.6E-28 151.1 16.4 156 8-167 2-165 (168)
144 TIGR02729 Obg_CgtA Obg family 99.9 1.7E-23 3.7E-28 165.4 17.7 160 6-167 157-328 (329)
145 PF02421 FeoB_N: Ferrous iron 99.9 4.6E-24 1E-28 150.1 12.4 148 7-163 1-156 (156)
146 PRK04213 GTP-binding protein; 99.9 3.8E-24 8.2E-29 159.1 11.8 154 4-170 7-194 (201)
147 TIGR03156 GTP_HflX GTP-binding 99.9 4.7E-23 1E-27 164.3 17.8 155 4-166 187-350 (351)
148 KOG0075 GTP-binding ADP-ribosy 99.9 2.3E-24 4.9E-29 145.5 7.2 156 6-167 20-181 (186)
149 TIGR00436 era GTP-binding prot 99.9 8.6E-23 1.9E-27 158.2 16.3 153 8-167 2-163 (270)
150 cd01881 Obg_like The Obg-like 99.9 4.8E-23 1E-27 149.7 13.6 155 11-166 1-175 (176)
151 KOG0071 GTP-binding ADP-ribosy 99.9 1.6E-22 3.6E-27 135.5 14.2 155 6-167 17-177 (180)
152 PRK12297 obgE GTPase CgtA; Rev 99.9 5E-22 1.1E-26 160.9 19.6 160 6-170 158-329 (424)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.7E-22 3.6E-27 144.0 15.0 146 7-167 2-156 (157)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5E-22 1.1E-26 162.6 18.9 154 5-172 202-364 (442)
155 PRK03003 GTP-binding protein D 99.9 2.3E-22 5E-27 166.9 17.0 176 6-196 38-223 (472)
156 PRK15494 era GTPase Era; Provi 99.9 3.3E-22 7.3E-27 159.1 16.5 157 3-169 49-217 (339)
157 cd01889 SelB_euk SelB subfamil 99.9 2.5E-22 5.4E-27 148.3 13.9 158 7-168 1-186 (192)
158 cd00881 GTP_translation_factor 99.9 4E-22 8.6E-27 146.4 14.9 156 8-167 1-186 (189)
159 PRK15467 ethanolamine utilizat 99.9 5.3E-22 1.2E-26 141.9 15.0 144 8-173 3-152 (158)
160 PF08477 Miro: Miro-like prote 99.9 3.9E-22 8.5E-27 136.1 13.5 115 8-122 1-119 (119)
161 TIGR00487 IF-2 translation ini 99.9 9.7E-22 2.1E-26 165.5 18.0 153 5-165 86-247 (587)
162 cd01894 EngA1 EngA1 subfamily. 99.9 3.1E-22 6.7E-27 142.7 12.9 146 10-166 1-156 (157)
163 PRK12296 obgE GTPase CgtA; Rev 99.9 1.4E-21 3.1E-26 160.3 18.2 163 6-171 159-343 (500)
164 PRK03003 GTP-binding protein D 99.9 7.9E-22 1.7E-26 163.7 16.9 162 5-172 210-386 (472)
165 PRK05291 trmE tRNA modificatio 99.9 8.6E-22 1.9E-26 162.0 16.4 148 6-169 215-371 (449)
166 TIGR01393 lepA GTP-binding pro 99.9 1.8E-21 3.8E-26 164.6 18.5 156 6-167 3-179 (595)
167 PRK11058 GTPase HflX; Provisio 99.9 2.4E-21 5.2E-26 157.8 18.2 158 7-170 198-364 (426)
168 KOG0076 GTP-binding ADP-ribosy 99.9 1.6E-22 3.5E-27 140.4 9.6 162 3-170 14-189 (197)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 8.3E-22 1.8E-26 146.6 13.3 159 7-167 1-198 (203)
170 PRK00454 engB GTP-binding prot 99.9 3.3E-21 7.1E-26 142.6 16.3 158 4-168 22-194 (196)
171 PRK12298 obgE GTPase CgtA; Rev 99.9 4.9E-21 1.1E-25 154.4 18.1 163 6-170 159-335 (390)
172 TIGR03598 GTPase_YsxC ribosome 99.9 2E-21 4.4E-26 141.9 14.5 148 3-157 15-179 (179)
173 cd04163 Era Era subfamily. Er 99.9 4.5E-21 9.9E-26 137.7 15.8 156 6-166 3-167 (168)
174 TIGR03594 GTPase_EngA ribosome 99.9 4.2E-21 9.1E-26 158.2 17.4 160 5-171 171-347 (429)
175 TIGR00475 selB selenocysteine- 99.9 4.4E-21 9.6E-26 162.0 17.6 155 7-170 1-168 (581)
176 cd01895 EngA2 EngA2 subfamily. 99.9 6.1E-21 1.3E-25 138.0 15.6 155 6-166 2-173 (174)
177 PRK00093 GTP-binding protein D 99.9 1.1E-20 2.5E-25 155.8 19.1 173 7-197 2-186 (435)
178 PRK05306 infB translation init 99.9 7.4E-21 1.6E-25 163.8 18.1 150 5-166 289-450 (787)
179 CHL00189 infB translation init 99.9 5.4E-21 1.2E-25 163.4 17.1 156 5-167 243-409 (742)
180 TIGR03594 GTPase_EngA ribosome 99.9 6.8E-21 1.5E-25 156.9 17.1 173 8-195 1-183 (429)
181 PRK00089 era GTPase Era; Revie 99.9 1.4E-20 3.1E-25 147.5 15.9 158 6-168 5-171 (292)
182 KOG1673 Ras GTPases [General f 99.9 3.3E-21 7.2E-26 131.5 10.4 164 5-169 19-187 (205)
183 PRK05433 GTP-binding protein L 99.9 2.1E-20 4.6E-25 158.2 17.2 162 1-168 2-184 (600)
184 KOG4423 GTP-binding protein-li 99.9 9.5E-24 2.1E-28 148.0 -2.5 170 2-171 21-197 (229)
185 TIGR00437 feoB ferrous iron tr 99.9 2.1E-20 4.5E-25 158.1 16.6 146 13-167 1-154 (591)
186 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 3.3E-21 7.1E-26 135.8 8.8 162 5-169 9-170 (216)
187 KOG0074 GTP-binding ADP-ribosy 99.9 1.2E-20 2.5E-25 126.9 10.8 156 4-165 15-176 (185)
188 COG1159 Era GTPase [General fu 99.8 6E-20 1.3E-24 139.1 15.7 161 5-170 5-174 (298)
189 cd00880 Era_like Era (E. coli 99.8 2.6E-20 5.7E-25 132.5 13.2 151 11-166 1-162 (163)
190 PF00009 GTP_EFTU: Elongation 99.8 1.3E-20 2.8E-25 138.7 11.7 159 5-167 2-186 (188)
191 PRK09518 bifunctional cytidyla 99.8 6.6E-20 1.4E-24 158.8 18.0 154 5-169 274-437 (712)
192 KOG0072 GTP-binding ADP-ribosy 99.8 2.3E-21 4.9E-26 130.7 6.4 160 4-170 16-181 (182)
193 PRK09554 feoB ferrous iron tra 99.8 1.4E-19 3E-24 156.6 18.6 153 6-167 3-167 (772)
194 COG1160 Predicted GTPases [Gen 99.8 1.2E-19 2.6E-24 144.6 15.0 176 7-198 4-192 (444)
195 TIGR00491 aIF-2 translation in 99.8 2.1E-19 4.6E-24 151.2 17.2 157 6-169 4-217 (590)
196 PRK00093 GTP-binding protein D 99.8 1.4E-19 3E-24 149.4 15.4 158 5-170 172-346 (435)
197 PRK12317 elongation factor 1-a 99.8 4.4E-20 9.6E-25 151.7 12.3 159 1-161 1-198 (425)
198 COG2229 Predicted GTPase [Gene 99.8 1.3E-18 2.8E-23 122.6 17.2 156 3-166 7-176 (187)
199 cd01896 DRG The developmentall 99.8 1.2E-18 2.6E-23 132.0 18.2 151 8-167 2-225 (233)
200 PRK09518 bifunctional cytidyla 99.8 7.3E-19 1.6E-23 152.3 19.1 159 5-171 449-624 (712)
201 cd04105 SR_beta Signal recogni 99.8 2.3E-19 4.9E-24 133.4 13.5 117 8-125 2-123 (203)
202 TIGR01394 TypA_BipA GTP-bindin 99.8 2.2E-19 4.8E-24 151.6 14.9 156 8-167 3-190 (594)
203 cd01876 YihA_EngB The YihA (En 99.8 4.4E-19 9.5E-24 127.6 14.5 150 8-166 1-169 (170)
204 TIGR00483 EF-1_alpha translati 99.8 2E-19 4.3E-24 147.8 14.2 156 4-161 5-200 (426)
205 PRK10218 GTP-binding protein; 99.8 1.4E-18 3E-23 146.8 18.2 163 5-175 4-198 (607)
206 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.3E-19 5E-24 134.0 12.1 149 8-159 1-185 (208)
207 PRK10512 selenocysteinyl-tRNA- 99.8 2.8E-18 6E-23 145.7 17.3 152 8-167 2-165 (614)
208 cd04168 TetM_like Tet(M)-like 99.8 1.4E-18 2.9E-23 131.9 13.7 114 8-125 1-130 (237)
209 TIGR03680 eif2g_arch translati 99.8 9.3E-19 2E-23 142.8 13.6 162 4-167 2-195 (406)
210 PRK04004 translation initiatio 99.8 5.4E-18 1.2E-22 143.2 18.6 158 5-169 5-219 (586)
211 PRK04000 translation initiatio 99.8 1.3E-18 2.7E-23 142.0 14.1 163 3-167 6-200 (411)
212 COG1160 Predicted GTPases [Gen 99.8 2.8E-18 6.2E-23 136.8 14.8 163 5-172 177-355 (444)
213 COG0486 ThdF Predicted GTPase 99.8 2.6E-18 5.6E-23 137.4 14.4 154 5-170 216-378 (454)
214 cd01884 EF_Tu EF-Tu subfamily. 99.8 7E-18 1.5E-22 124.4 15.7 148 6-157 2-172 (195)
215 KOG1489 Predicted GTP-binding 99.8 3.9E-18 8.5E-23 129.7 14.1 157 6-166 196-365 (366)
216 COG0218 Predicted GTPase [Gene 99.8 9.5E-18 2.1E-22 120.8 15.3 158 4-169 22-198 (200)
217 PF10662 PduV-EutP: Ethanolami 99.8 4.3E-18 9.3E-23 117.4 12.9 135 8-164 3-142 (143)
218 cd01883 EF1_alpha Eukaryotic e 99.8 2.8E-18 6E-23 129.1 11.8 148 8-157 1-194 (219)
219 COG2262 HflX GTPases [General 99.8 2.6E-17 5.7E-22 129.6 16.8 169 5-180 191-368 (411)
220 cd04167 Snu114p Snu114p subfam 99.8 7.6E-18 1.6E-22 126.3 12.7 113 8-124 2-136 (213)
221 COG0370 FeoB Fe2+ transport sy 99.8 2.7E-17 5.8E-22 136.9 15.8 156 7-171 4-167 (653)
222 TIGR00485 EF-Tu translation el 99.8 2.2E-17 4.7E-22 134.4 14.9 153 4-160 10-186 (394)
223 PRK12736 elongation factor Tu; 99.8 3.2E-17 6.9E-22 133.3 15.7 146 5-154 11-179 (394)
224 COG0532 InfB Translation initi 99.8 5.2E-17 1.1E-21 131.7 16.6 156 5-170 4-172 (509)
225 KOG1423 Ras-like GTPase ERA [C 99.8 3.8E-17 8.1E-22 123.8 14.4 162 4-169 70-272 (379)
226 cd04169 RF3 RF3 subfamily. Pe 99.8 6.6E-17 1.4E-21 124.7 15.7 115 7-125 3-137 (267)
227 COG0536 Obg Predicted GTPase [ 99.7 6.2E-17 1.3E-21 124.5 14.1 165 7-172 160-337 (369)
228 PRK12735 elongation factor Tu; 99.7 9.1E-17 2E-21 130.7 15.6 147 5-155 11-180 (396)
229 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.2E-17 2.6E-22 125.2 9.4 163 8-173 1-181 (232)
230 cd04104 p47_IIGP_like p47 (47- 99.7 1.9E-16 4E-21 117.3 15.4 159 6-171 1-187 (197)
231 cd04165 GTPBP1_like GTPBP1-lik 99.7 2E-16 4.3E-21 119.1 15.4 154 8-165 1-220 (224)
232 CHL00071 tufA elongation facto 99.7 4E-16 8.7E-21 127.5 16.9 149 4-156 10-181 (409)
233 COG1084 Predicted GTPase [Gene 99.7 5.1E-16 1.1E-20 119.0 15.3 160 5-170 167-338 (346)
234 cd01886 EF-G Elongation factor 99.7 1E-16 2.3E-21 123.7 11.6 114 8-125 1-130 (270)
235 KOG1707 Predicted Ras related/ 99.7 5.1E-17 1.1E-21 132.3 10.3 162 6-169 9-176 (625)
236 PRK00741 prfC peptide chain re 99.7 5.1E-16 1.1E-20 129.8 16.1 117 5-125 9-145 (526)
237 PRK05124 cysN sulfate adenylyl 99.7 3.4E-16 7.3E-21 129.7 14.9 154 4-160 25-217 (474)
238 KOG1145 Mitochondrial translat 99.7 7E-16 1.5E-20 125.0 15.9 158 5-170 152-318 (683)
239 cd01850 CDC_Septin CDC/Septin. 99.7 4.5E-16 9.7E-21 120.7 14.3 144 5-152 3-186 (276)
240 cd01885 EF2 EF2 (for archaea a 99.7 3.2E-16 7E-21 117.5 12.8 113 8-124 2-138 (222)
241 PLN03126 Elongation factor Tu; 99.7 9.5E-16 2.1E-20 126.7 16.8 148 5-156 80-250 (478)
242 TIGR02034 CysN sulfate adenyly 99.7 4E-16 8.7E-21 127.3 13.3 150 7-159 1-188 (406)
243 KOG0077 Vesicle coat complex C 99.7 1.9E-16 4E-21 109.6 9.3 154 6-166 20-191 (193)
244 PLN00043 elongation factor 1-a 99.7 3.9E-16 8.5E-21 128.3 13.0 151 4-158 5-203 (447)
245 cd01899 Ygr210 Ygr210 subfamil 99.7 1.1E-15 2.3E-20 120.3 14.7 81 9-89 1-110 (318)
246 cd04170 EF-G_bact Elongation f 99.7 1.1E-15 2.4E-20 118.5 14.6 133 8-146 1-149 (268)
247 PTZ00327 eukaryotic translatio 99.7 4.7E-16 1E-20 127.7 13.0 164 2-167 30-232 (460)
248 PF01926 MMR_HSR1: 50S ribosom 99.7 2.2E-15 4.9E-20 102.2 14.0 106 8-120 1-116 (116)
249 PRK00049 elongation factor Tu; 99.7 2.2E-15 4.7E-20 122.6 16.4 148 4-155 10-180 (396)
250 PTZ00141 elongation factor 1- 99.7 1.5E-15 3.3E-20 125.0 15.2 152 4-158 5-203 (446)
251 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 3.5E-15 7.7E-20 110.4 15.0 159 7-169 1-185 (196)
252 PRK13351 elongation factor G; 99.7 1.9E-15 4E-20 131.1 15.5 118 4-125 6-139 (687)
253 PLN03127 Elongation factor Tu; 99.7 4E-15 8.6E-20 122.4 15.5 147 5-155 60-232 (447)
254 COG1163 DRG Predicted GTPase [ 99.7 5.2E-15 1.1E-19 113.3 14.4 156 5-169 62-290 (365)
255 PRK05506 bifunctional sulfate 99.6 3.9E-15 8.4E-20 127.9 14.4 151 5-158 23-211 (632)
256 KOG0462 Elongation factor-type 99.6 5.6E-15 1.2E-19 119.7 13.9 172 4-183 58-246 (650)
257 COG3596 Predicted GTPase [Gene 99.6 3.2E-15 6.9E-20 112.2 10.2 162 4-168 37-222 (296)
258 PRK12739 elongation factor G; 99.6 1.7E-14 3.6E-19 125.0 15.7 118 4-125 6-139 (691)
259 TIGR00484 EF-G translation elo 99.6 1.5E-14 3.2E-19 125.4 14.5 118 4-125 8-141 (689)
260 TIGR00503 prfC peptide chain r 99.6 1.8E-14 3.9E-19 120.6 14.5 118 4-125 9-146 (527)
261 PRK09602 translation-associate 99.6 5.1E-14 1.1E-18 114.0 16.3 83 7-89 2-113 (396)
262 cd00066 G-alpha G protein alph 99.6 4.5E-14 9.8E-19 111.6 14.6 119 53-171 159-314 (317)
263 COG4917 EutP Ethanolamine util 99.6 1.5E-14 3.3E-19 95.6 9.3 136 8-165 3-143 (148)
264 KOG1191 Mitochondrial GTPase [ 99.6 1.2E-14 2.6E-19 116.6 10.1 167 4-172 266-454 (531)
265 KOG3905 Dynein light intermedi 99.6 6E-14 1.3E-18 107.4 13.4 160 7-169 53-291 (473)
266 PF09439 SRPRB: Signal recogni 99.6 2.2E-14 4.7E-19 103.3 8.9 115 7-125 4-126 (181)
267 COG1217 TypA Predicted membran 99.6 7.9E-14 1.7E-18 111.3 12.6 174 6-183 5-206 (603)
268 COG5256 TEF1 Translation elong 99.6 6.8E-14 1.5E-18 110.5 11.7 156 3-159 4-202 (428)
269 smart00275 G_alpha G protein a 99.5 4.4E-13 9.4E-18 106.9 16.0 119 54-172 183-338 (342)
270 COG0481 LepA Membrane GTPase L 99.5 2.4E-13 5.1E-18 108.9 14.1 169 4-183 7-197 (603)
271 PRK09866 hypothetical protein; 99.5 1.2E-12 2.5E-17 109.5 18.0 109 55-165 230-350 (741)
272 PRK00007 elongation factor G; 99.5 2.2E-13 4.7E-18 118.1 14.3 144 4-153 8-171 (693)
273 PRK12740 elongation factor G; 99.5 5.3E-13 1.1E-17 115.7 16.4 110 12-125 1-126 (668)
274 KOG1490 GTP-binding protein CR 99.5 1.5E-13 3.3E-18 110.5 10.1 170 6-178 168-351 (620)
275 PF04548 AIG1: AIG1 family; I 99.5 5.6E-13 1.2E-17 99.8 12.4 160 7-170 1-188 (212)
276 COG2895 CysN GTPases - Sulfate 99.5 5.4E-13 1.2E-17 103.3 12.2 152 2-158 2-193 (431)
277 PRK14845 translation initiatio 99.5 1.7E-12 3.6E-17 115.1 16.9 145 18-169 473-674 (1049)
278 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.2E-12 2.7E-17 101.5 13.8 119 5-125 37-167 (313)
279 TIGR00490 aEF-2 translation el 99.5 2.4E-13 5.2E-18 118.2 10.9 119 3-125 16-152 (720)
280 cd01853 Toc34_like Toc34-like 99.5 1.2E-12 2.5E-17 99.9 13.4 120 4-125 29-163 (249)
281 TIGR00157 ribosome small subun 99.5 1.3E-13 2.8E-18 105.2 7.7 96 66-165 24-120 (245)
282 PTZ00258 GTP-binding protein; 99.5 2.1E-12 4.5E-17 103.8 14.1 86 4-89 19-126 (390)
283 KOG0090 Signal recognition par 99.4 1.3E-12 2.8E-17 94.5 10.3 154 7-166 39-237 (238)
284 COG5257 GCD11 Translation init 99.4 4.1E-13 8.9E-18 102.8 7.2 172 4-181 8-211 (415)
285 TIGR00101 ureG urease accessor 99.4 5.5E-12 1.2E-16 93.3 13.1 102 55-167 92-195 (199)
286 KOG0082 G-protein alpha subuni 99.4 6.9E-12 1.5E-16 98.6 14.2 126 48-173 188-349 (354)
287 PF05783 DLIC: Dynein light in 99.4 8.4E-12 1.8E-16 102.6 14.5 161 7-170 26-266 (472)
288 PRK13768 GTPase; Provisional 99.4 5.1E-12 1.1E-16 97.0 11.5 110 56-167 98-246 (253)
289 KOG0461 Selenocysteine-specifi 99.4 3.1E-11 6.8E-16 93.5 15.5 172 3-179 4-200 (522)
290 PRK09601 GTP-binding protein Y 99.4 3.4E-11 7.4E-16 95.8 15.8 83 7-89 3-107 (364)
291 TIGR00073 hypB hydrogenase acc 99.4 3.6E-12 7.9E-17 95.1 9.7 56 111-166 148-205 (207)
292 PLN00116 translation elongatio 99.4 3.8E-12 8.3E-17 112.4 10.8 118 3-124 16-163 (843)
293 KOG1144 Translation initiation 99.4 5.9E-12 1.3E-16 105.6 11.3 161 7-174 476-693 (1064)
294 PTZ00416 elongation factor 2; 99.4 6.4E-12 1.4E-16 110.9 11.2 117 4-124 17-157 (836)
295 PRK07560 elongation factor EF- 99.3 3.8E-11 8.3E-16 104.8 15.1 117 4-124 18-152 (731)
296 smart00010 small_GTPase Small 99.3 2.5E-11 5.5E-16 82.8 11.0 114 7-157 1-115 (124)
297 PRK09435 membrane ATPase/prote 99.3 2.6E-11 5.7E-16 95.7 12.4 111 54-175 148-267 (332)
298 cd01882 BMS1 Bms1. Bms1 is an 99.3 5.5E-11 1.2E-15 89.8 13.2 137 6-155 39-183 (225)
299 PF05049 IIGP: Interferon-indu 99.3 2.2E-11 4.8E-16 97.0 11.2 156 5-167 34-217 (376)
300 KOG1707 Predicted Ras related/ 99.3 6.4E-11 1.4E-15 97.2 13.7 159 5-168 424-583 (625)
301 TIGR02836 spore_IV_A stage IV 99.3 2.4E-10 5.3E-15 91.3 16.4 141 6-151 17-218 (492)
302 COG0480 FusA Translation elong 99.3 6.7E-11 1.4E-15 101.4 13.7 119 3-125 7-142 (697)
303 cd01900 YchF YchF subfamily. 99.3 9.2E-11 2E-15 90.5 13.0 81 9-89 1-103 (274)
304 KOG1532 GTPase XAB1, interacts 99.3 1.1E-11 2.5E-16 93.1 7.4 119 54-172 115-268 (366)
305 PF00350 Dynamin_N: Dynamin fa 99.3 1E-10 2.2E-15 84.4 11.9 63 56-121 102-168 (168)
306 KOG0458 Elongation factor 1 al 99.3 2.8E-11 6E-16 99.3 9.5 153 5-159 176-373 (603)
307 COG0378 HypB Ni2+-binding GTPa 99.3 1E-10 2.2E-15 84.1 11.0 55 113-167 144-200 (202)
308 KOG3886 GTP-binding protein [S 99.3 9.1E-12 2E-16 91.3 5.6 145 7-153 5-164 (295)
309 PF03029 ATP_bind_1: Conserved 99.2 1.4E-11 3E-16 93.5 6.1 112 56-167 92-236 (238)
310 COG0050 TufB GTPases - transla 99.2 2.6E-10 5.6E-15 86.7 12.2 170 5-181 11-210 (394)
311 KOG0705 GTPase-activating prot 99.2 6.2E-11 1.4E-15 96.6 8.6 160 6-172 30-193 (749)
312 TIGR00750 lao LAO/AO transport 99.2 2E-10 4.2E-15 90.5 11.0 104 54-168 126-238 (300)
313 KOG0410 Predicted GTP binding 99.2 4.3E-11 9.3E-16 92.0 6.6 157 7-174 179-347 (410)
314 TIGR00993 3a0901s04IAP86 chlor 99.2 1.2E-09 2.5E-14 92.1 15.4 119 5-125 117-250 (763)
315 PF00735 Septin: Septin; Inte 99.2 1.4E-09 3.1E-14 84.5 14.7 141 5-150 3-183 (281)
316 PF00503 G-alpha: G-protein al 99.2 1E-09 2.2E-14 89.6 14.3 115 53-167 234-389 (389)
317 smart00053 DYNc Dynamin, GTPas 99.2 6.5E-10 1.4E-14 84.1 11.8 69 55-126 125-207 (240)
318 COG0012 Predicted GTPase, prob 99.2 2.4E-09 5.3E-14 84.4 15.0 84 6-89 2-108 (372)
319 COG4108 PrfC Peptide chain rel 99.2 6.4E-10 1.4E-14 88.7 11.6 116 7-126 13-148 (528)
320 COG3276 SelB Selenocysteine-sp 99.1 6.9E-10 1.5E-14 88.7 11.5 153 8-168 2-162 (447)
321 KOG3887 Predicted small GTPase 99.1 3.7E-10 8E-15 83.6 8.8 163 7-172 28-206 (347)
322 KOG0468 U5 snRNP-specific prot 99.1 8E-10 1.7E-14 92.1 10.9 117 3-123 125-261 (971)
323 PRK10463 hydrogenase nickel in 99.1 6.3E-11 1.4E-15 91.4 3.7 56 111-166 230-287 (290)
324 cd01855 YqeH YqeH. YqeH is an 99.1 1.2E-09 2.5E-14 80.5 10.2 94 68-168 24-125 (190)
325 cd01859 MJ1464 MJ1464. This f 99.1 4.9E-10 1.1E-14 79.9 7.7 95 68-168 2-96 (156)
326 COG5019 CDC3 Septin family pro 99.1 2.9E-09 6.3E-14 83.5 12.0 163 4-172 21-223 (373)
327 KOG1486 GTP-binding protein DR 99.1 1.2E-08 2.5E-13 76.2 13.8 86 6-93 62-154 (364)
328 PRK12289 GTPase RsgA; Reviewed 99.0 7.3E-10 1.6E-14 88.5 7.6 92 69-165 80-172 (352)
329 KOG2486 Predicted GTPase [Gene 99.0 2E-09 4.4E-14 81.3 7.9 153 4-165 134-313 (320)
330 PRK12288 GTPase RsgA; Reviewed 99.0 2.1E-09 4.6E-14 85.8 8.3 87 76-165 118-205 (347)
331 KOG2655 Septin family protein 99.0 7.5E-09 1.6E-13 81.7 11.0 164 4-174 19-220 (366)
332 KOG0099 G protein subunit Galp 99.0 1.9E-09 4.1E-14 80.8 6.9 118 54-171 201-372 (379)
333 KOG0466 Translation initiation 99.0 3.6E-10 7.8E-15 86.4 2.7 161 1-167 33-240 (466)
334 COG1703 ArgK Putative periplas 99.0 1.8E-09 3.8E-14 82.6 6.4 111 54-176 143-262 (323)
335 PRK00098 GTPase RsgA; Reviewed 98.9 5.3E-09 1.2E-13 82.2 8.0 85 75-163 77-162 (298)
336 KOG0085 G protein subunit Galp 98.9 3.4E-09 7.4E-14 78.1 6.2 122 51-172 195-353 (359)
337 PF03308 ArgK: ArgK protein; 98.9 1.3E-09 2.8E-14 82.2 3.8 158 5-174 28-236 (266)
338 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.3E-08 2.9E-13 79.6 8.6 88 73-165 73-161 (287)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 8.6E-09 1.9E-13 72.2 6.4 54 8-65 85-138 (141)
340 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.7E-13 73.7 6.8 55 6-64 117-171 (172)
341 KOG1547 Septin CDC10 and relat 98.8 4.8E-08 1E-12 72.5 9.7 146 3-153 43-228 (336)
342 KOG0460 Mitochondrial translat 98.8 1E-07 2.3E-12 74.1 10.8 171 5-181 53-254 (449)
343 TIGR03597 GTPase_YqeH ribosome 98.8 6.2E-08 1.3E-12 78.2 9.6 95 65-166 50-151 (360)
344 TIGR03348 VI_IcmF type VI secr 98.8 1.3E-07 2.8E-12 86.8 12.5 112 9-125 114-257 (1169)
345 cd01849 YlqF_related_GTPase Yl 98.8 4.6E-08 1E-12 69.6 7.8 87 80-170 1-87 (155)
346 cd01858 NGP_1 NGP-1. Autoanti 98.7 3.8E-08 8.2E-13 70.2 7.1 55 6-64 102-156 (157)
347 TIGR00092 GTP-binding protein 98.7 1.6E-07 3.5E-12 75.1 10.9 83 7-89 3-108 (368)
348 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.2E-08 1.6E-12 68.8 7.9 91 75-168 5-95 (157)
349 KOG1954 Endocytosis/signaling 98.7 3E-07 6.6E-12 72.4 11.6 120 3-125 55-225 (532)
350 PF09547 Spore_IV_A: Stage IV 98.7 8.5E-07 1.8E-11 71.3 14.3 142 6-152 17-219 (492)
351 COG5258 GTPBP1 GTPase [General 98.7 5.9E-07 1.3E-11 71.1 13.2 157 4-164 115-335 (527)
352 KOG0464 Elongation factor G [T 98.7 2E-08 4.4E-13 80.0 4.8 132 7-144 38-185 (753)
353 cd01856 YlqF YlqF. Proteins o 98.7 6.7E-08 1.4E-12 70.0 6.8 57 5-65 114-170 (171)
354 KOG0465 Mitochondrial elongati 98.6 1.5E-07 3.3E-12 78.1 8.7 115 6-124 39-169 (721)
355 KOG1491 Predicted GTP-binding 98.6 1.3E-07 2.8E-12 73.5 7.8 84 6-89 20-125 (391)
356 KOG0448 Mitofusin 1 GTPase, in 98.6 1.4E-06 3E-11 73.5 14.1 144 5-152 108-310 (749)
357 KOG0447 Dynamin-like GTP bindi 98.6 1.1E-06 2.5E-11 72.5 13.4 135 3-140 305-508 (980)
358 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.6E-07 3.4E-12 73.6 8.0 58 5-66 120-177 (287)
359 cd01855 YqeH YqeH. YqeH is an 98.6 8.9E-08 1.9E-12 70.5 6.1 56 7-65 128-190 (190)
360 cd01859 MJ1464 MJ1464. This f 98.6 1.5E-07 3.2E-12 67.1 7.0 56 5-64 100-155 (156)
361 TIGR03596 GTPase_YlqF ribosome 98.6 1.4E-07 3E-12 73.5 7.3 57 5-65 117-173 (276)
362 KOG0467 Translation elongation 98.6 2.3E-07 5E-12 78.8 8.8 117 3-123 6-136 (887)
363 cd01856 YlqF YlqF. Proteins o 98.6 2.2E-07 4.7E-12 67.3 7.6 93 69-169 10-102 (171)
364 COG1161 Predicted GTPases [Gen 98.6 1E-07 2.3E-12 75.6 6.4 57 6-66 132-188 (322)
365 KOG1143 Predicted translation 98.6 5.7E-07 1.2E-11 71.0 9.9 154 5-162 166-382 (591)
366 TIGR03596 GTPase_YlqF ribosome 98.5 8.3E-07 1.8E-11 69.2 10.0 93 70-170 13-105 (276)
367 cd01851 GBP Guanylate-binding 98.5 2.1E-06 4.6E-11 64.8 11.8 87 5-92 6-105 (224)
368 PF03193 DUF258: Protein of un 98.5 1.3E-07 2.8E-12 67.1 4.2 59 8-69 37-101 (161)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.6E-07 1E-11 63.4 7.1 77 73-155 6-84 (141)
370 cd01849 YlqF_related_GTPase Yl 98.5 5.2E-07 1.1E-11 64.2 6.3 56 5-65 99-155 (155)
371 cd03112 CobW_like The function 98.4 3E-06 6.6E-11 60.5 8.9 21 9-29 3-23 (158)
372 PRK12288 GTPase RsgA; Reviewed 98.4 6.7E-07 1.4E-11 71.7 6.0 58 9-69 208-271 (347)
373 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.8E-06 6.1E-11 66.6 9.4 125 62-195 7-132 (287)
374 PRK13796 GTPase YqeH; Provisio 98.3 6.3E-06 1.4E-10 66.8 10.3 94 66-166 57-157 (365)
375 PRK12289 GTPase RsgA; Reviewed 98.3 1.1E-06 2.4E-11 70.4 5.7 57 9-69 175-238 (352)
376 PRK01889 GTPase RsgA; Reviewed 98.3 3E-06 6.5E-11 68.3 8.1 83 76-164 110-193 (356)
377 COG1618 Predicted nucleotide k 98.3 6.8E-05 1.5E-09 52.7 13.6 146 5-167 4-175 (179)
378 COG3523 IcmF Type VI protein s 98.3 5.3E-06 1.2E-10 75.0 9.9 111 9-125 128-270 (1188)
379 PRK10416 signal recognition pa 98.2 1.4E-05 3E-10 63.4 10.4 105 54-170 196-312 (318)
380 KOG4273 Uncharacterized conser 98.2 1.6E-05 3.4E-10 59.8 10.0 161 6-170 4-224 (418)
381 TIGR00157 ribosome small subun 98.2 2E-06 4.4E-11 65.8 5.5 58 8-69 122-185 (245)
382 PRK13796 GTPase YqeH; Provisio 98.2 2.4E-06 5.3E-11 69.1 5.6 57 7-66 161-221 (365)
383 TIGR00064 ftsY signal recognit 98.2 3.5E-05 7.5E-10 59.9 11.7 102 54-167 154-267 (272)
384 TIGR03597 GTPase_YqeH ribosome 98.2 4.5E-06 9.8E-11 67.5 6.9 59 7-68 155-217 (360)
385 COG1162 Predicted GTPases [Gen 98.2 7.1E-06 1.5E-10 63.6 7.6 92 71-165 72-164 (301)
386 PRK14974 cell division protein 98.2 1E-05 2.2E-10 64.4 8.5 103 55-170 223-332 (336)
387 TIGR01425 SRP54_euk signal rec 98.2 2.6E-05 5.6E-10 64.0 10.8 85 54-148 182-272 (429)
388 KOG1487 GTP-binding protein DR 98.1 1.1E-05 2.3E-10 60.9 7.3 82 7-90 60-148 (358)
389 COG1162 Predicted GTPases [Gen 98.1 4.6E-06 1E-10 64.6 5.5 59 8-69 166-230 (301)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.4E-06 1.2E-10 65.0 5.8 60 7-69 162-227 (287)
391 COG5192 BMS1 GTP-binding prote 98.1 1.6E-05 3.6E-10 66.1 8.6 107 6-124 69-176 (1077)
392 KOG1424 Predicted GTP-binding 98.1 4.5E-06 9.8E-11 68.4 4.5 56 6-65 314-369 (562)
393 PRK00098 GTPase RsgA; Reviewed 98.1 8.6E-06 1.9E-10 64.2 5.8 58 8-68 166-229 (298)
394 PF02492 cobW: CobW/HypB/UreG, 98.0 1.4E-05 3.1E-10 58.2 6.1 82 55-142 85-171 (178)
395 PRK11537 putative GTP-binding 98.0 0.00019 4.1E-09 57.1 12.4 95 55-160 91-196 (318)
396 KOG3859 Septins (P-loop GTPase 98.0 5.6E-05 1.2E-09 57.7 8.7 59 6-64 42-104 (406)
397 cd03114 ArgK-like The function 97.9 6.6E-05 1.4E-09 52.9 7.9 58 54-122 91-148 (148)
398 PRK14722 flhF flagellar biosyn 97.9 0.00017 3.8E-09 58.2 11.0 139 7-149 138-315 (374)
399 PRK12727 flagellar biosynthesi 97.9 0.00037 8.1E-09 58.5 13.0 91 54-156 428-523 (559)
400 COG0523 Putative GTPases (G3E 97.9 0.00061 1.3E-08 54.1 13.0 143 9-160 4-193 (323)
401 PRK13695 putative NTPase; Prov 97.9 0.0007 1.5E-08 49.0 12.3 22 7-28 1-22 (174)
402 PRK14721 flhF flagellar biosyn 97.9 0.00051 1.1E-08 56.4 12.6 142 7-161 192-371 (420)
403 KOG2484 GTPase [General functi 97.8 1.6E-05 3.4E-10 63.4 3.5 57 5-65 251-307 (435)
404 cd03115 SRP The signal recogni 97.8 0.00022 4.8E-09 51.5 9.4 84 54-147 82-171 (173)
405 KOG0459 Polypeptide release fa 97.8 1.9E-05 4.1E-10 63.1 3.0 157 4-161 77-279 (501)
406 KOG0463 GTP-binding protein GP 97.7 0.00022 4.8E-09 56.8 8.6 25 6-30 133-157 (641)
407 cd02038 FleN-like FleN is a me 97.7 0.00016 3.4E-09 50.5 6.9 105 11-123 5-109 (139)
408 PF03266 NTPase_1: NTPase; In 97.7 5.6E-05 1.2E-09 54.4 4.7 136 8-157 1-164 (168)
409 PRK05703 flhF flagellar biosyn 97.7 0.00085 1.9E-08 55.5 12.2 90 54-156 299-396 (424)
410 cd02042 ParA ParA and ParB of 97.7 0.00033 7.1E-09 46.1 8.1 82 9-102 2-84 (104)
411 KOG0469 Elongation factor 2 [T 97.7 0.00016 3.6E-09 59.5 7.2 115 5-123 18-162 (842)
412 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00019 4.1E-09 41.4 5.4 45 77-122 12-58 (58)
413 PF00448 SRP54: SRP54-type pro 97.7 0.00088 1.9E-08 49.5 10.5 89 55-156 84-179 (196)
414 PRK06995 flhF flagellar biosyn 97.6 0.00018 4E-09 59.9 7.0 93 55-160 335-435 (484)
415 PRK14723 flhF flagellar biosyn 97.6 0.00048 1E-08 60.3 9.4 98 54-161 263-368 (767)
416 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00074 1.6E-08 43.3 8.1 70 9-92 2-72 (99)
417 COG3640 CooC CO dehydrogenase 97.6 0.0012 2.6E-08 49.4 9.9 61 74-144 151-212 (255)
418 PRK00771 signal recognition pa 97.5 0.00058 1.3E-08 56.5 8.6 85 55-149 176-266 (437)
419 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0023 5E-08 46.5 10.8 23 8-30 27-49 (177)
420 PRK10867 signal recognition pa 97.5 0.00055 1.2E-08 56.5 8.3 86 54-149 183-274 (433)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0023 4.9E-08 44.9 10.2 23 8-30 28-50 (144)
422 PRK12726 flagellar biosynthesi 97.5 0.00057 1.2E-08 55.2 7.9 92 54-157 285-382 (407)
423 TIGR02475 CobW cobalamin biosy 97.5 0.0031 6.7E-08 50.7 11.6 99 55-162 93-224 (341)
424 PF11111 CENP-M: Centromere pr 97.5 0.0094 2E-07 42.6 12.7 139 4-167 13-152 (176)
425 KOG2485 Conserved ATP/GTP bind 97.4 0.00029 6.4E-09 54.7 5.4 59 5-64 142-205 (335)
426 cd03111 CpaE_like This protein 97.4 0.00084 1.8E-08 44.5 7.0 99 13-120 7-106 (106)
427 TIGR00959 ffh signal recogniti 97.4 0.001 2.2E-08 54.9 8.8 86 54-149 182-273 (428)
428 PF13207 AAA_17: AAA domain; P 97.4 0.00015 3.3E-09 49.0 3.1 22 8-29 1-22 (121)
429 KOG0780 Signal recognition par 97.4 0.00083 1.8E-08 53.8 7.3 45 53-97 182-232 (483)
430 COG0563 Adk Adenylate kinase a 97.4 0.00016 3.4E-09 52.6 3.0 23 7-29 1-23 (178)
431 TIGR00235 udk uridine kinase. 97.4 0.00023 5E-09 53.1 3.9 29 1-29 1-29 (207)
432 PRK08118 topology modulation p 97.4 0.00018 3.9E-09 51.8 3.1 23 7-29 2-24 (167)
433 cd00009 AAA The AAA+ (ATPases 97.3 0.0021 4.7E-08 44.3 8.6 25 7-31 20-44 (151)
434 cd03110 Fer4_NifH_child This p 97.3 0.0032 6.8E-08 45.7 9.7 86 53-147 91-176 (179)
435 PRK07261 topology modulation p 97.3 0.00017 3.7E-09 52.2 2.9 23 7-29 1-23 (171)
436 KOG1534 Putative transcription 97.3 0.00058 1.2E-08 50.3 5.5 21 7-27 4-24 (273)
437 PF13671 AAA_33: AAA domain; P 97.3 0.00019 4E-09 50.1 3.0 21 9-29 2-22 (143)
438 PRK12723 flagellar biosynthesi 97.3 0.014 3E-07 47.8 14.0 107 54-172 254-368 (388)
439 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0013 2.9E-08 45.3 6.9 23 8-30 24-46 (133)
440 PRK12724 flagellar biosynthesi 97.3 0.0024 5.1E-08 52.4 9.3 132 7-149 224-393 (432)
441 PF13555 AAA_29: P-loop contai 97.3 0.00028 6.1E-09 41.6 2.9 22 8-29 25-46 (62)
442 PF00005 ABC_tran: ABC transpo 97.3 0.00024 5.1E-09 49.2 3.1 23 8-30 13-35 (137)
443 COG1419 FlhF Flagellar GTP-bin 97.3 0.013 2.9E-07 47.6 13.2 131 8-148 205-371 (407)
444 PRK10751 molybdopterin-guanine 97.3 0.00032 7E-09 50.6 3.5 29 1-29 1-29 (173)
445 PF03215 Rad17: Rad17 cell cyc 97.2 0.0023 4.9E-08 54.2 9.0 21 9-29 48-68 (519)
446 COG1116 TauB ABC-type nitrate/ 97.2 0.00032 6.9E-09 53.0 3.6 21 9-29 32-52 (248)
447 COG1126 GlnQ ABC-type polar am 97.2 0.00036 7.8E-09 51.6 3.6 37 134-170 148-186 (240)
448 PRK06731 flhF flagellar biosyn 97.2 0.0049 1.1E-07 47.9 9.9 132 7-149 76-245 (270)
449 cd02036 MinD Bacterial cell di 97.2 0.012 2.6E-07 42.4 11.6 84 56-146 64-147 (179)
450 COG1136 SalX ABC-type antimicr 97.2 0.00029 6.2E-09 52.9 2.8 22 8-29 33-54 (226)
451 cd02019 NK Nucleoside/nucleoti 97.2 0.0004 8.6E-09 42.2 3.0 21 9-29 2-22 (69)
452 PF13521 AAA_28: AAA domain; P 97.2 0.00024 5.2E-09 50.8 2.3 22 8-29 1-22 (163)
453 COG1120 FepC ABC-type cobalami 97.2 0.00033 7.1E-09 53.6 2.9 21 9-29 31-51 (258)
454 cd04178 Nucleostemin_like Nucl 97.2 0.001 2.3E-08 48.1 5.4 44 80-125 1-44 (172)
455 PRK14737 gmk guanylate kinase; 97.2 0.00037 7.9E-09 51.1 3.0 24 7-30 5-28 (186)
456 cd00071 GMPK Guanosine monopho 97.1 0.00053 1.1E-08 47.7 3.4 21 9-29 2-22 (137)
457 COG0802 Predicted ATPase or ki 97.1 0.0027 5.9E-08 44.3 6.8 77 8-85 27-104 (149)
458 PRK14738 gmk guanylate kinase; 97.1 0.00037 8E-09 52.0 2.6 25 5-29 12-36 (206)
459 cd01131 PilT Pilus retraction 97.1 0.0035 7.5E-08 46.4 7.8 22 9-30 4-25 (198)
460 KOG1970 Checkpoint RAD17-RFC c 97.1 0.0069 1.5E-07 50.8 10.0 87 81-167 196-283 (634)
461 PRK06217 hypothetical protein; 97.1 0.0005 1.1E-08 50.2 3.2 23 7-29 2-24 (183)
462 PRK10646 ADP-binding protein; 97.1 0.0051 1.1E-07 43.4 8.0 23 8-30 30-52 (153)
463 PTZ00088 adenylate kinase 1; P 97.1 0.00054 1.2E-08 51.9 3.3 29 1-29 1-29 (229)
464 PRK01889 GTPase RsgA; Reviewed 97.1 0.0006 1.3E-08 55.1 3.7 25 7-31 196-220 (356)
465 COG0396 sufC Cysteine desulfur 97.1 0.00064 1.4E-08 50.7 3.5 23 9-31 33-55 (251)
466 cd03238 ABC_UvrA The excision 97.1 0.00053 1.2E-08 49.8 3.1 21 7-27 22-42 (176)
467 PF07015 VirC1: VirC1 protein; 97.1 0.0086 1.9E-07 45.1 9.5 103 54-161 83-187 (231)
468 COG3842 PotA ABC-type spermidi 97.0 0.00098 2.1E-08 53.4 4.7 23 9-31 34-56 (352)
469 PF03205 MobB: Molybdopterin g 97.0 0.00062 1.3E-08 47.5 3.2 22 8-29 2-23 (140)
470 COG4619 ABC-type uncharacteriz 97.0 0.0019 4.2E-08 46.1 5.5 22 8-29 31-52 (223)
471 PRK10078 ribose 1,5-bisphospho 97.0 0.0006 1.3E-08 49.9 3.1 22 8-29 4-25 (186)
472 COG1134 TagH ABC-type polysacc 97.0 0.00077 1.7E-08 50.8 3.7 24 8-31 55-78 (249)
473 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00055 1.2E-08 52.2 2.9 22 8-29 32-53 (254)
474 PRK03839 putative kinase; Prov 97.0 0.00059 1.3E-08 49.6 2.9 22 8-29 2-23 (180)
475 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00064 1.4E-08 44.9 2.8 20 8-27 17-36 (107)
476 PF13238 AAA_18: AAA domain; P 97.0 0.00064 1.4E-08 46.2 2.8 21 9-29 1-21 (129)
477 COG3839 MalK ABC-type sugar tr 97.0 0.00079 1.7E-08 53.6 3.6 22 9-30 32-53 (338)
478 COG0194 Gmk Guanylate kinase [ 97.0 0.00035 7.5E-09 50.5 1.4 25 6-30 4-28 (191)
479 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00094 2E-08 49.7 3.8 23 8-30 28-50 (205)
480 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00087 1.9E-08 50.0 3.6 23 8-30 29-51 (211)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00093 2E-08 50.1 3.8 23 8-30 32-54 (218)
482 TIGR03238 dnd_assoc_3 dnd syst 97.0 0.0059 1.3E-07 50.8 8.5 17 8-24 34-50 (504)
483 TIGR01166 cbiO cobalt transpor 97.0 0.00092 2E-08 49.1 3.6 23 8-30 20-42 (190)
484 PRK05480 uridine/cytidine kina 97.0 0.00096 2.1E-08 49.8 3.7 26 4-29 4-29 (209)
485 PF02367 UPF0079: Uncharacteri 96.9 0.0018 4E-08 43.9 4.7 23 8-30 17-39 (123)
486 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.014 2.9E-07 43.8 9.8 21 7-27 30-50 (213)
487 PRK15177 Vi polysaccharide exp 96.9 0.00092 2E-08 50.1 3.5 24 7-30 14-37 (213)
488 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0087 1.9E-07 46.4 9.0 84 8-95 82-165 (264)
489 PF00004 AAA: ATPase family as 96.9 0.00084 1.8E-08 45.8 3.1 21 9-29 1-21 (132)
490 smart00382 AAA ATPases associa 96.9 0.00089 1.9E-08 45.8 3.2 27 7-33 3-29 (148)
491 PF04665 Pox_A32: Poxvirus A32 96.9 0.00078 1.7E-08 51.1 3.0 25 5-29 12-36 (241)
492 COG3845 ABC-type uncharacteriz 96.9 0.0087 1.9E-07 49.5 9.2 51 70-122 150-201 (501)
493 TIGR02322 phosphon_PhnN phosph 96.9 0.00078 1.7E-08 48.9 3.0 22 8-29 3-24 (179)
494 COG1117 PstB ABC-type phosphat 96.9 0.00065 1.4E-08 50.3 2.5 20 9-28 36-55 (253)
495 cd03261 ABC_Org_Solvent_Resist 96.9 0.0011 2.3E-08 50.5 3.8 23 8-30 28-50 (235)
496 COG4615 PvdE ABC-type sideroph 96.9 0.0017 3.7E-08 52.4 4.9 81 9-105 352-432 (546)
497 COG4598 HisP ABC-type histidin 96.9 0.0041 8.9E-08 45.0 6.4 37 134-170 164-202 (256)
498 TIGR00960 3a0501s02 Type II (G 96.9 0.0011 2.4E-08 49.7 3.8 23 8-30 31-53 (216)
499 cd02023 UMPK Uridine monophosp 96.9 0.0008 1.7E-08 49.7 3.0 21 9-29 2-22 (198)
500 KOG2423 Nucleolar GTPase [Gene 96.9 0.00033 7.3E-09 56.1 0.9 82 5-93 306-389 (572)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-45 Score=259.71 Aligned_cols=199 Identities=48% Similarity=0.835 Sum_probs=183.9
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.+||+|+|..|+|||+|+.||....+.+.+..|+|+++..+.+.++++.++++||||+|+++|+.+...||+++|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~ 161 (211)
|+|||+++.++|..+..|+.++.++...++|.++|+||+|+.+.+.+..++++.|+.+++.+ ++++||+++.||+++|.
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~ 165 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL 165 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237 162 KTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211 (211)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
.|...+.++..........+..++.+.+ ++.++..++||+
T Consensus 166 ~la~~lk~~~~~~~~~~~~~~~~~ql~~----------~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 166 TLAKELKQRKGLHVKWSTASLESVQLKG----------TPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHhcccCCCCCcCCCCceeeCC----------CCcccccCCCCC
Confidence 9999999998887766655555555543 234455556886
No 2
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-43 Score=245.40 Aligned_cols=188 Identities=86% Similarity=1.299 Sum_probs=181.6
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.+.+.+|++++|..|+|||+|+.+|+..+|.+.+..|.|+++..+.++++++.++++||||.|++.|.++...||+.+-
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
++|+|||+++.++|..+..|+..++++..++.-+++++||+|+..++++..++++.|++++++.+.++||+++.||+|.|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccCCCCCcc-eeec
Q 028237 161 IKTAATIYKKIQDGVFDVSNESYG-IKVG 188 (211)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (211)
......+.+....+..+...++.+ ++.+
T Consensus 161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~ 189 (216)
T KOG0098|consen 161 INTAKEIYRKIQDGVFDDINESKGKIKIG 189 (216)
T ss_pred HHHHHHHHHHHHhcccccccccccceeec
Confidence 999999999999998888877777 6654
No 3
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=246.75 Aligned_cols=210 Identities=98% Similarity=1.466 Sum_probs=195.3
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.+++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 88999999999999999999999999999998888888888888888889988899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
++|+|||++++.+++.+..|+..+......+.|+++++||+|+.+.+.+..++.+++++.++++++++||+++.|++++|
T Consensus 81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999888876666689999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCC
Q 028237 161 IKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210 (211)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 210 (211)
.++++.+.+...+.......++.++..+..+.|+.+.++.++...-+|||
T Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 99999999988888888888889999999999999999999999999998
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-41 Score=238.02 Aligned_cols=197 Identities=40% Similarity=0.736 Sum_probs=174.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+|+|..++|||||+.||..+.|.+...+|+|..+..+.+.+.+..+++.||||+|+++|.++...||++++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|||+++.++|..+..|..++.+...+++-+.+++||+|+.+.+++..+++..+++..++.++|+||++|.|++++|..|.
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 99999999999999999999998888888899999999999899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237 165 ATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
+++..............+.+..+. + ...+..+++|||
T Consensus 164 ~~lp~~~~~~~~~~~~~~~g~~l~-------~---~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 164 EKLPCSDPQERQGLPNRRQGVDLN-------S---NQEPARPSGCCA 200 (200)
T ss_pred HhccCccccccccccccccceecc-------c---CCCCcCcCCcCC
Confidence 998877665443222222222221 1 116777889997
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-40 Score=234.13 Aligned_cols=174 Identities=52% Similarity=0.939 Sum_probs=168.9
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.+||+++|.++||||+|+.+|..+.|...+..|.|+++..+.+.+++..+.+++|||+|+++|..+...||+.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+++|||+++..+++++..|+..+..+....+|.++|+||+|+.+.+++..+.+++++.++|+.++|+||++|.||++.|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 028237 162 KTAATIYKKIQDGV 175 (211)
Q Consensus 162 ~l~~~~~~~~~~~~ 175 (211)
.|++.+..+..+..
T Consensus 168 ~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 168 SLARDILQKLEDAE 181 (207)
T ss_pred HHHHHHHhhcchhh
Confidence 99999999777653
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-40 Score=231.24 Aligned_cols=167 Identities=40% Similarity=0.720 Sum_probs=158.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|..++||||||++|....|+..|.+|+|+++...++.+++.++++++|||+|+++|+.+...|+++++++|+|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||+++..+++.+.+|++.+...... +.-+++|+||.||.+.+++..++.++.++++++.|+++||+.|.||.++|..|.
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 9999999999999999999887765 588899999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHh
Q 028237 165 ATIYKKIQ 172 (211)
Q Consensus 165 ~~~~~~~~ 172 (211)
..+.+...
T Consensus 182 a~l~~~~~ 189 (221)
T KOG0094|consen 182 AALPGMEV 189 (221)
T ss_pred HhccCccc
Confidence 77766644
No 7
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-39 Score=232.82 Aligned_cols=180 Identities=54% Similarity=0.916 Sum_probs=173.1
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+|+.+||+++|.+++|||-|+.+|..+.|......|+|.++..+.+.++++.++.+||||+|+++|+.+...||+.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+++|||++...+++++..|+.+++.+.+.++++++|+||+|+.+.+.+..+++..+++..+..++++||.+..|++++|.
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCCCC
Q 028237 162 KTAATIYKKIQDGVFDVSNE 181 (211)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~ 181 (211)
.++..|+....+........
T Consensus 170 ~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 170 RVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 99999999988876665544
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-38 Score=217.86 Aligned_cols=168 Identities=46% Similarity=0.817 Sum_probs=161.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..+||+++|..|+|||+|+.+|..+.|+.....++|.++..+.+.++++.+++-||||+|+++|+.+...||+.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
|+|||++.++++..+..|++++..+.. +++-.++|+||+|..+++.++.++..+|++++++.++++||++.+||...|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 999999999999999999999988886 6788899999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028237 162 KTAATIYKK 170 (211)
Q Consensus 162 ~l~~~~~~~ 170 (211)
.|+++|++-
T Consensus 168 elveKIi~t 176 (209)
T KOG0080|consen 168 ELVEKIIET 176 (209)
T ss_pred HHHHHHhcC
Confidence 999999875
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.6e-37 Score=233.08 Aligned_cols=207 Identities=47% Similarity=0.806 Sum_probs=171.5
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 35789999999999999999999999999888889989999888899999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+..+...+.|+++++||+|+.+.+....++...++...+++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999777777788888999989999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237 163 TAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211 (211)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
|++.+.+............+... +..+...+....+..+++++|||+
T Consensus 169 l~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c~ 215 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEAAANS--GLPGQGTTINVADTSGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHhhccccccccCcccc--cCcCcCCcccccCccCCCCCCCcC
Confidence 99999887654332222111111 111111111112335778889996
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.8e-37 Score=229.72 Aligned_cols=166 Identities=45% Similarity=0.784 Sum_probs=152.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+.|+++|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999999888899899998888999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+.+.++++. ++.++++||++|.||+++|.+|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887765568999999999999777778888889999875 789999999999999999999999
Q ss_pred HHHHHHh
Q 028237 166 TIYKKIQ 172 (211)
Q Consensus 166 ~~~~~~~ 172 (211)
.+.+...
T Consensus 161 ~~~~~~~ 167 (202)
T cd04120 161 DILKKMP 167 (202)
T ss_pred HHHHhCc
Confidence 8877543
No 11
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-38 Score=215.38 Aligned_cols=190 Identities=55% Similarity=0.919 Sum_probs=183.2
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+||+.+|++|+|+.|+|||+|+++|..+.|......++|+++..+.+.+.++.++++||||+|+++|++..+.||+.+-+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
.++|||+++.++++.+..|+...+-...+++-+++++||.|+.+.+++...+..+|+++..+.+.++|+.+|+||+|.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCCCCCcceeeccCC
Q 028237 162 KTAATIYKKIQDGVFDVSNESYGIKVGYGG 191 (211)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
...+.|..+..-++.+..+..+++.-|...
T Consensus 165 ~c~~tIl~kIE~GElDPer~gsGIQYGdas 194 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERMGSGIQYGDAS 194 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHcccccccchhh
Confidence 999999999999999999999999887654
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.3e-37 Score=225.70 Aligned_cols=170 Identities=35% Similarity=0.703 Sum_probs=156.7
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.+||+|+|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 36778999999999999999999999998888887888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+.++..+. .+.|++||+||.|+.+.+.+..++++.+++..+++++++||++|.||+++|.
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999997765 5899999999999987777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028237 162 KTAATIYKKIQ 172 (211)
Q Consensus 162 ~l~~~~~~~~~ 172 (211)
+|++.+..+..
T Consensus 161 ~l~~~i~~~~~ 171 (189)
T cd04121 161 ELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHhcC
Confidence 99998876544
No 13
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-36 Score=225.85 Aligned_cols=167 Identities=40% Similarity=0.699 Sum_probs=150.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988889998888888888887 7889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhc----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~~ 160 (211)
||++++++++.+..|+..+.... ..+.|++||+||+|+.+......+++..+++..+ .+++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876532 2578999999999997656678889999999998 689999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028237 161 IKTAATIYKKIQD 173 (211)
Q Consensus 161 ~~l~~~~~~~~~~ 173 (211)
.+|++.+.+....
T Consensus 161 ~~l~~~l~~~~~~ 173 (201)
T cd04107 161 RFLVKNILANDKN 173 (201)
T ss_pred HHHHHHHHHhchh
Confidence 9999999876543
No 14
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=211.71 Aligned_cols=205 Identities=45% Similarity=0.768 Sum_probs=181.5
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.++.++++|+|.+-+|||+|++.|+.++++.-..||+|.++..+.+.++ +..+++++|||+|+++|+++.+.||+++=+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 4678999999999999999999999999999999999999999988774 778999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcC-C-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHAN-A-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
+++|||+++.++++++..|+.+...+.. + +.-+.+|++|+|+..+++++.+++++++..++..++|+|+++|.||++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999988876665 3 4456788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCcceeeccCC-CCCCCCCCCCCCCCCCCCCC
Q 028237 160 FIKTAATIYKKIQDGVFDVSNESYGIKVGYGG-IPGPSGGRDGSSSQAGGCCS 211 (211)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~cc~ 211 (211)
|..|.+.+...+.++..+....-.+++++... .| .+.....|+|. |||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~--~s~~~~~P~k~--c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIP--RSPSRKQPSKP--CQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCCcCC--CcccccCCCCC--CCC
Confidence 99999999999999999998888888875442 22 22233344444 877
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=5.5e-36 Score=222.34 Aligned_cols=173 Identities=45% Similarity=0.765 Sum_probs=156.0
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+++..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++++++
T Consensus 2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++++++.+..|+..+.... ...|++||+||+|+.+.......+...++...+++++++||++|.|+.++|+
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 999999999999999999998886654 4789999999999987666777888889988899999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 028237 162 KTAATIYKKIQDGV 175 (211)
Q Consensus 162 ~l~~~~~~~~~~~~ 175 (211)
+|.+.+.....+..
T Consensus 161 ~l~~~~~~~~~~~~ 174 (199)
T cd04110 161 CITELVLRAKKDNL 174 (199)
T ss_pred HHHHHHHHhhhccC
Confidence 99999987755543
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5.4e-36 Score=220.91 Aligned_cols=166 Identities=39% Similarity=0.643 Sum_probs=146.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988887777766554 4456678888899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888866542 5789999999999976666777788888888899999999999999999999999
Q ss_pred HHHHHHHhcC
Q 028237 165 ATIYKKIQDG 174 (211)
Q Consensus 165 ~~~~~~~~~~ 174 (211)
+.+.+...++
T Consensus 160 ~~l~~~~~~~ 169 (190)
T cd04144 160 RALRQQRQGG 169 (190)
T ss_pred HHHHHhhccc
Confidence 9988777764
No 17
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.2e-36 Score=223.87 Aligned_cols=187 Identities=30% Similarity=0.524 Sum_probs=153.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|..+.+.. +.++.+..+....+ ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666666544333 4688999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-------------------RRAVSTEEGEQFAKEHG----- 142 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 142 (211)
|++++++++.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988877765556799999999999965 56778899999999876
Q ss_pred ---------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCC
Q 028237 143 ---------LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210 (211)
Q Consensus 143 ---------~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 210 (211)
++|+++||++|.||+++|..+++.+.+.......+.... +.+.- .+..|++|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT-------QGTVN-----LPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-------hcccc-----CCCcccCCCCCC
Confidence 679999999999999999999999887665543322221 11122 445677888998
No 18
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.2e-35 Score=220.78 Aligned_cols=184 Identities=51% Similarity=0.866 Sum_probs=161.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999999998888888888888777777 466789999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
+|||++++++++.+..|+..+..... ...|++||+||.|+.+...+..++...+++.++++++++||++|.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876654 45788999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCCCCCcceeec
Q 028237 163 TAATIYKKIQDGVFDVSNESYGIKVG 188 (211)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (211)
|++.+.+....+.......--+++.+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSG 186 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccC
Confidence 99999999887765555554444444
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=207.38 Aligned_cols=169 Identities=46% Similarity=0.788 Sum_probs=162.0
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++.+|+|.+|+|||+|+.+|....|...|..++|.++..+++.+++..+++.|||++|++.|..+...||+..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
++|||+++.++|.+...|+++++...+ ..|-++|+||.|.++++.+..++.+.|+...++.+|++||++.+|++..|.-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999999999988776 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028237 163 TAATIYKKIQ 172 (211)
Q Consensus 163 l~~~~~~~~~ 172 (211)
|.+++.+...
T Consensus 164 it~qvl~~k~ 173 (198)
T KOG0079|consen 164 ITKQVLQAKL 173 (198)
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-37 Score=206.05 Aligned_cols=173 Identities=45% Similarity=0.812 Sum_probs=164.8
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
|+..+||+++|..|+|||+|+++|+.+-|++....++|.++-.+++.+++..++++||||+|+++|+++...||+.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++-..+++.+.+|+.++..+...++--|+|+||+|+.+++++...-.++|.+.....++++||++-.|++.+|..
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 99999999999999999999999999888889999999999998899899999999998888999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 028237 163 TAATIYKKIQDGV 175 (211)
Q Consensus 163 l~~~~~~~~~~~~ 175 (211)
+...+........
T Consensus 164 ~a~rli~~ar~~d 176 (213)
T KOG0095|consen 164 LACRLISEARQND 176 (213)
T ss_pred HHHHHHHHHHhcc
Confidence 9988887766543
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.9e-35 Score=219.11 Aligned_cols=168 Identities=24% Similarity=0.453 Sum_probs=149.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|..|+|||+|+++|..+.|...+.++++..+. ..+.+++..+.+.||||+|++.|..++..|++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 35789999999999999999999999999999999877764 45788899999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+ ...+..++++++++..++ .|+++|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999984 78999887665 4789999999999854 256788999999999999 599999
Q ss_pred cCCCC-CHHHHHHHHHHHHHHHHhc
Q 028237 150 AKTAQ-NVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 150 a~~g~-~v~~~~~~l~~~~~~~~~~ 173 (211)
|++|. ||+++|..++..+.+....
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhccc
Confidence 99997 8999999999998876444
No 22
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=209.98 Aligned_cols=170 Identities=37% Similarity=0.683 Sum_probs=158.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
-..+||+++|.+|+|||||+++|....|...+..++|.++..+.+.+++..+.++||||+|+++|.++.-.+|+.+|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCC--CCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNV 156 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v 156 (211)
+|||++++.+++.+..|..++..+.. ..-|+||++||+|+.+. ++++...++.|++..+ +||||+||++..||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999987776 46799999999999663 6788999999998875 89999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 028237 157 EEAFIKTAATIYKKIQD 173 (211)
Q Consensus 157 ~~~~~~l~~~~~~~~~~ 173 (211)
.++|..+.+........
T Consensus 167 ~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 167 DEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999988887654
No 23
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.9e-35 Score=220.21 Aligned_cols=164 Identities=32% Similarity=0.560 Sum_probs=149.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999898888888864 578999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998877643 35689999999999776777888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 163 TAATIYKK 170 (211)
Q Consensus 163 l~~~~~~~ 170 (211)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998765
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.4e-35 Score=211.63 Aligned_cols=164 Identities=66% Similarity=1.079 Sum_probs=151.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+++.+||+||++.+..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888888888888888899899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..++++.+++..+++++++||++|.|+.++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766668999999999999877777888999999999999999999999999999999998
Q ss_pred HHHH
Q 028237 166 TIYK 169 (211)
Q Consensus 166 ~~~~ 169 (211)
++.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
No 25
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.6e-35 Score=214.21 Aligned_cols=167 Identities=46% Similarity=0.777 Sum_probs=152.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++++++.+..|+..+........|+++++||.|+.+...+..++...+++..+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766678999999999998766677888888998889999999999999999999999999
Q ss_pred HHHHHhc
Q 028237 167 IYKKIQD 173 (211)
Q Consensus 167 ~~~~~~~ 173 (211)
+..+...
T Consensus 161 ~~~~~~~ 167 (188)
T cd04125 161 IIKRLEE 167 (188)
T ss_pred HHHHhhc
Confidence 9876543
No 26
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.4e-35 Score=215.74 Aligned_cols=165 Identities=47% Similarity=0.839 Sum_probs=148.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|.+|||||||+++|....+.. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988764 5666777777777788888899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
||++++++++.+..|+..+......+.|+++++||+|+.+.+....++...++...+++++++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998888776568999999999999766667778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 028237 166 TIYKKI 171 (211)
Q Consensus 166 ~~~~~~ 171 (211)
.+.+..
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987764
No 27
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-36 Score=200.81 Aligned_cols=171 Identities=41% Similarity=0.798 Sum_probs=163.9
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.++.+|++|+|...+|||||+.++.+..|......++|+++..+++.-..+.+++++|||.|++.+..+...|++.++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 67889999999999999999999999999999999999999999887777889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|++||+++.+++..++.|...+.-+.+.+.|+|+++||+|+.+++.+..+.++.++++.|..+||+||+.+.||..+|+.
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028237 163 TAATIYKKIQD 173 (211)
Q Consensus 163 l~~~~~~~~~~ 173 (211)
+...|-..+.+
T Consensus 178 lv~~Ic~kmse 188 (193)
T KOG0093|consen 178 LVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHhhh
Confidence 99999887664
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1e-34 Score=209.93 Aligned_cols=166 Identities=54% Similarity=0.959 Sum_probs=153.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
|+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999999999998999888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|||++++++++.+..|+..+......+.|+++++||+|+.+......++...++...+++++++||++|.|++++|.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766689999999999998766677888888999999999999999999999999999
Q ss_pred HHHHHH
Q 028237 164 AATIYK 169 (211)
Q Consensus 164 ~~~~~~ 169 (211)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998764
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.2e-34 Score=210.50 Aligned_cols=168 Identities=40% Similarity=0.764 Sum_probs=151.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC----------CEEEEEEEEeCCCcchhhhhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID----------NKPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~ 72 (211)
+++.+||+++|.+|||||||+++|....+...+.++.+.++....+.+. +..+.+.+||++|++.+..++
T Consensus 1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 3678999999999999999999999999998888888888877666654 456899999999999999999
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (211)
..+++++|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 9999999999999999999999999999998876643 578999999999998777778888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~~~~ 170 (211)
+|.|++++|++|++.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988765
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.2e-34 Score=209.04 Aligned_cols=168 Identities=33% Similarity=0.547 Sum_probs=149.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999888888876555 45577888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.||+++|.+|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999998888766543 5799999999999977777888889999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 028237 165 ATIYKKIQDG 174 (211)
Q Consensus 165 ~~~~~~~~~~ 174 (211)
+.+.+....+
T Consensus 161 ~~~~~~~~~~ 170 (172)
T cd04141 161 REIRRKESMP 170 (172)
T ss_pred HHHHHhccCC
Confidence 9888765543
No 31
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=212.04 Aligned_cols=168 Identities=39% Similarity=0.629 Sum_probs=149.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+|+|.+|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988888888876665 5667788888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++++++.+..|+..+..... .+.|+++++||+|+.+...+...+...+++..+++++++||++|.|+.++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999988876543 588999999999997666667777888888888999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028237 164 AATIYKKIQD 173 (211)
Q Consensus 164 ~~~~~~~~~~ 173 (211)
++.+.+..++
T Consensus 163 ~~~l~~~~~~ 172 (189)
T PTZ00369 163 VREIRKYLKE 172 (189)
T ss_pred HHHHHHHhhc
Confidence 9998876554
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.1e-34 Score=213.70 Aligned_cols=165 Identities=24% Similarity=0.484 Sum_probs=143.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|..+.++..+.++++..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999999999877664 56778899999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237 87 DITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT 152 (211)
Q Consensus 87 d~~~~~~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (211)
|++++++++.+.. |...+.. ...+.|+++|+||+|+.+. ..+..++++.++++.++ +|+|+||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999864 6555544 3468999999999999542 12567889999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHhc
Q 028237 153 AQN-VEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 153 g~~-v~~~~~~l~~~~~~~~~~ 173 (211)
+.+ |.++|...+.....+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 985 999999999987765543
No 33
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.1e-34 Score=205.69 Aligned_cols=167 Identities=90% Similarity=1.355 Sum_probs=153.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
|++.+||+|+|.+|+|||||+++|....+...+.++.+.++....+.+++....+.+||++|++.+..++..+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 57889999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
++|||++++.+++.+..|+..+..+...+.|+++++||.|+.+...+..++...++...+++++++||+++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999766667788888899999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 163 TAATIYK 169 (211)
Q Consensus 163 l~~~~~~ 169 (211)
+++.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988754
No 34
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.2e-34 Score=209.47 Aligned_cols=162 Identities=27% Similarity=0.510 Sum_probs=145.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|..|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4678999999999999999999999999998999887665 456788999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++.+ ..|+..+..+. ++.|++||+||+|+.+ ...+..++++++++..++ +|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78999887765 4799999999999854 235788999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHH
Q 028237 150 AKTAQN-VEEAFIKTAATI 167 (211)
Q Consensus 150 a~~g~~-v~~~~~~l~~~~ 167 (211)
|++|.| |+++|..+++..
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
No 35
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=192.65 Aligned_cols=209 Identities=57% Similarity=0.936 Sum_probs=184.3
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|-+++|.+|+|.-|+|||+|+++|+...|-.....+++..+..+.+.+.+...+++|||++|+++|+...+.|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
.++|||++...++..+..|+...+....++.-+++++||.|+..++.+..++...|+++.++-+++.||++|.|+++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999988877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237 162 KTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211 (211)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
....++.+...+++.+.+.-.+++.--+..+.+..- ......+|-+|-|
T Consensus 167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c~c 215 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccCCC
Confidence 999999999999999888766666332221111111 3334445557844
No 36
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.4e-34 Score=208.93 Aligned_cols=159 Identities=31% Similarity=0.629 Sum_probs=143.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||+|+.+|..+.+...+.+|.+..+ ...+.+++..+++.||||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988999987666 455778888999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCC----------CCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237 87 DITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHGL-IFMEASAKTAQ 154 (211)
Q Consensus 87 d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~g~ 154 (211)
|++++.+++.+ ..|+..+.... .+.|++||+||+|+.+.. .+..+++..+++..++ +++|+||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887665 479999999999996542 4778899999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATI 167 (211)
Q Consensus 155 ~v~~~~~~l~~~~ 167 (211)
||+++|..+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999865
No 37
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=6.1e-34 Score=205.60 Aligned_cols=164 Identities=54% Similarity=0.927 Sum_probs=150.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
||+++++++..+..|+..+......+.|+++++||.|+.+...+..++...+++..+++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999987776567999999999999776677788889999999999999999999999999999998
Q ss_pred HHHH
Q 028237 166 TIYK 169 (211)
Q Consensus 166 ~~~~ 169 (211)
.+..
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 8753
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.6e-34 Score=204.85 Aligned_cols=160 Identities=44% Similarity=0.829 Sum_probs=148.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
++|+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877665679999999999998777778889999999999999999999999999999999864
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-33 Score=204.13 Aligned_cols=162 Identities=43% Similarity=0.791 Sum_probs=147.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888888887777777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++++++.+..|+..+........|+++++||+|+.+.+....++..++++..+++++++||++|.|+.++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999997766677788888888889999999999999999999999887
Q ss_pred HH
Q 028237 167 IY 168 (211)
Q Consensus 167 ~~ 168 (211)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.2e-33 Score=203.99 Aligned_cols=162 Identities=34% Similarity=0.702 Sum_probs=149.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998877653 4799999999999976556778888888888899999999999999999999
Q ss_pred HHHHHHH
Q 028237 162 KTAATIY 168 (211)
Q Consensus 162 ~l~~~~~ 168 (211)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 41
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.8e-35 Score=199.96 Aligned_cols=171 Identities=34% Similarity=0.680 Sum_probs=161.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
-+.+||+++|..-+|||||+-++..++|......+.-..+..+.+.+++....+.||||+|+++|..+..-||+.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 45799999999999999999999999999888888777888888999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|||++|.++|+.+..|..+++......+-+++|+||+|+.+++.+..++.+.+++..|+.|+++||+++.||.++|..|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 028237 164 AATIYKKIQDG 174 (211)
Q Consensus 164 ~~~~~~~~~~~ 174 (211)
..++++....-
T Consensus 171 t~~MiE~~s~~ 181 (218)
T KOG0088|consen 171 TAKMIEHSSQR 181 (218)
T ss_pred HHHHHHHhhhc
Confidence 99998886543
No 42
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.4e-33 Score=206.48 Aligned_cols=165 Identities=33% Similarity=0.599 Sum_probs=145.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|.+|+|||||+++|..+.+.. .+.++.+.++....+.+++..+.+.+||++|.+++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998875 5777778888777888999899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ..+...++..++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998886653 47999999999998532 23455677888888899999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028237 162 KTAATIYKKIQ 172 (211)
Q Consensus 162 ~l~~~~~~~~~ 172 (211)
+|.+.+.+...
T Consensus 160 ~i~~~~~~~~~ 170 (193)
T cd04118 160 KVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcc
Confidence 99999976654
No 43
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.5e-33 Score=207.97 Aligned_cols=162 Identities=25% Similarity=0.539 Sum_probs=142.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|..|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 38999999999999999999999999888999987655 34567888899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEecC
Q 028237 86 YDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHG-LIFMEASAK 151 (211)
Q Consensus 86 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~ 151 (211)
||++++.+++.+. .|+..+.... .+.|++||+||.|+.+.. .+..++++.+++..+ ++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 5877776554 479999999999996532 356678889999988 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~~~ 169 (211)
+|.||+++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987754
No 44
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.1e-33 Score=202.57 Aligned_cols=164 Identities=57% Similarity=0.931 Sum_probs=150.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 35689999999999999999999999988888899888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|||++++.++..+..|+..+......+.|+++++||.|+.+.+....++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999888776679999999999997766777888889998889999999999999999999999
Q ss_pred HHHH
Q 028237 164 AATI 167 (211)
Q Consensus 164 ~~~~ 167 (211)
++.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 45
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.6e-33 Score=202.52 Aligned_cols=161 Identities=39% Similarity=0.730 Sum_probs=153.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+|+|+.++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
++++++++.+..|+..+......+.|++|++||.|+.+.+.+..++++.+++.++++++++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999888876799999999999988788999999999999999999999999999999999999987
Q ss_pred H
Q 028237 168 Y 168 (211)
Q Consensus 168 ~ 168 (211)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 46
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-33 Score=205.86 Aligned_cols=161 Identities=28% Similarity=0.518 Sum_probs=143.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999988888877665 45678889999999999999999999999999999999999
Q ss_pred EECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEecC
Q 028237 86 YDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEASAK 151 (211)
Q Consensus 86 ~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~ 151 (211)
||++++++++.+ ..|+..+..+. ++.|+++|+||+|+.+ ...+..++++++++..++ +++++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999887765 4799999999999854 235788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028237 152 TAQN-VEEAFIKTAATIY 168 (211)
Q Consensus 152 ~g~~-v~~~~~~l~~~~~ 168 (211)
+|.+ |.++|..+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998543
No 47
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.5e-33 Score=205.04 Aligned_cols=162 Identities=27% Similarity=0.496 Sum_probs=143.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999999988888889998999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-----CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-----RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
|++++++++.+..|+..+........| ++|+||+|+.+. .....++.+++++..+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776544566 678999998421 11224567788888899999999999999999999
Q ss_pred HHHHHHHH
Q 028237 162 KTAATIYK 169 (211)
Q Consensus 162 ~l~~~~~~ 169 (211)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998865
No 48
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4e-33 Score=205.09 Aligned_cols=165 Identities=31% Similarity=0.529 Sum_probs=142.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988888887666643 35554 6788999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 028237 86 YDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR----RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEA 159 (211)
Q Consensus 86 ~d~~~~~~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~ 159 (211)
||++++.+++.+.. |+..+... ..+.|+++++||.|+... +.+...+.++++...++ +++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999864 77766544 357999999999998543 24567888899999988 8999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028237 160 FIKTAATIYKKIQD 173 (211)
Q Consensus 160 ~~~l~~~~~~~~~~ 173 (211)
|..+++.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999877554
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.4e-33 Score=200.91 Aligned_cols=163 Identities=48% Similarity=0.866 Sum_probs=147.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~~~~ 162 (211)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..+++..+. .++++||++|.|++++|.+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999998776666899999999999977767778888889988876 5899999999999999999
Q ss_pred HHHH
Q 028237 163 TAAT 166 (211)
Q Consensus 163 l~~~ 166 (211)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9875
No 50
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-35 Score=201.64 Aligned_cols=173 Identities=40% Similarity=0.724 Sum_probs=161.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC---------CEEEEEEEEeCCCcchhhhhhH
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID---------NKPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
|++.|+++.+|.+|+|||+|+.+++.+.|...-..++|+++..+.+.++ +..+++++|||+|+++|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 7899999999999999999999999999999999999999998887773 2458899999999999999999
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT 152 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (211)
.|++.+=+++++||++++.++-+++.|+..++.+.- .+-.+++++||+|+++.+.++.+++..++.++++|||++||-+
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 999999999999999999999999999999988775 5666889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCc
Q 028237 153 AQNVEEAFIKTAATIYKKIQDGV 175 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~~~~~~~ 175 (211)
|.||.+..+.|...+++++.+..
T Consensus 166 g~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 51
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2e-32 Score=205.07 Aligned_cols=167 Identities=49% Similarity=0.794 Sum_probs=145.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..+||+|+|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456789999999999999999999988764 5667778888778888888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHH-HHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 83 LLVYDITRRETFNHLAS-WLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~-~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
|+|||++++++++.+.. |...+..... .+.|+++|+||+|+........++...++...+++++++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999876 5555544332 468999999999997766677788888888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 028237 161 IKTAATIYKK 170 (211)
Q Consensus 161 ~~l~~~~~~~ 170 (211)
++|.+.+.+.
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.1e-33 Score=200.50 Aligned_cols=160 Identities=38% Similarity=0.615 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|..+.+...+.++.+ ......+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999988877777755 444566778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++.+++.+..|+..+..... .+.|+++++||+|+.+.+....++...+++.++++++++||++|.|+.++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 57999999999999765566677778888888899999999999999999999987
Q ss_pred HH
Q 028237 166 TI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.4e-33 Score=198.92 Aligned_cols=160 Identities=59% Similarity=1.002 Sum_probs=148.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++.++..+..|+..+......+.|+++++||.|+.+...+..+++..++...+++++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999997766777888999999999999999999999999999999875
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=9.8e-33 Score=198.64 Aligned_cols=163 Identities=61% Similarity=0.955 Sum_probs=150.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|+.++.+++.+..|+..+..+...+.|+++++||+|+.+..+...+.++.+++..+++++++|+.+|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776689999999999997666677888888999899999999999999999999999998
Q ss_pred HHH
Q 028237 167 IYK 169 (211)
Q Consensus 167 ~~~ 169 (211)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 765
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.2e-33 Score=201.58 Aligned_cols=160 Identities=24% Similarity=0.526 Sum_probs=139.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+++.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888776664 4567788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEecC
Q 028237 86 YDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEASAK 151 (211)
Q Consensus 86 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 151 (211)
||++++++++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++++++++.+ +.++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 4887776654 47999999999998543 3566778888988887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAATI 167 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~ 167 (211)
+|.|+.++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=8.2e-33 Score=199.30 Aligned_cols=161 Identities=36% Similarity=0.621 Sum_probs=142.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888777777766554 456777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++.+++.+..|+..+..... .+.|+++++||+|+.+......++...+++..+++++++||++|.|+.++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888866543 68999999999999776666777778888888999999999999999999999988
Q ss_pred HHH
Q 028237 166 TIY 168 (211)
Q Consensus 166 ~~~ 168 (211)
++.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.4e-32 Score=197.55 Aligned_cols=159 Identities=36% Similarity=0.629 Sum_probs=144.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID--NKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+||+++|.+|+|||||+++|..+.+...+.++.+.++....+.+. +..+++.+||+||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888888888877777777 778999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|||++++++++.+..|+..+.... .+.|+++++||+|+..+..+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998886544 4899999999999977667778888999999999999999999999999999987
Q ss_pred HH
Q 028237 165 AT 166 (211)
Q Consensus 165 ~~ 166 (211)
++
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 58
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.1e-32 Score=197.42 Aligned_cols=162 Identities=36% Similarity=0.657 Sum_probs=144.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999998988888888889989999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
++++++++.+..|+..+..... ...|+++|+||.|+.+... ...++...+++..+.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999988765543 3578999999999855432 235667778888889999999999999999999999
Q ss_pred HHHHH
Q 028237 165 ATIYK 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 59
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.1e-32 Score=197.55 Aligned_cols=160 Identities=31% Similarity=0.584 Sum_probs=142.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888888888887777777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++++++.+..|+..+..... +.|+++|+||+|+.+. ... .+..++++..+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999887765 8999999999999643 232 34456777778899999999999999999999988
Q ss_pred HHH
Q 028237 167 IYK 169 (211)
Q Consensus 167 ~~~ 169 (211)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3.5e-32 Score=197.13 Aligned_cols=163 Identities=38% Similarity=0.664 Sum_probs=145.8
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+++|.+|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999999888888888888778888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~ 157 (211)
|+|||++++++++.+..|+..+..... .+.|+++++||+|+. ......++++++++..+. +++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999888766542 468999999999986 445677888999988874 79999999999999
Q ss_pred HHHHHHHHH
Q 028237 158 EAFIKTAAT 166 (211)
Q Consensus 158 ~~~~~l~~~ 166 (211)
++|.++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 61
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.6e-32 Score=206.39 Aligned_cols=164 Identities=31% Similarity=0.533 Sum_probs=146.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|.+|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 45789999999999999999999999999889999998888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .+++..+++++++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999987664 57999999999998643 3344444 7777888999999999999999999999
Q ss_pred HHHHHHH
Q 028237 164 AATIYKK 170 (211)
Q Consensus 164 ~~~~~~~ 170 (211)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=5.1e-32 Score=196.36 Aligned_cols=162 Identities=43% Similarity=0.800 Sum_probs=147.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-hhhHHhhcCCcEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALL 84 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 84 (211)
.++|+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999999888888888888888888899989999999999999886 578999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC---CCCHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT---AQNVEEAF 160 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---g~~v~~~~ 160 (211)
|||++++.+++.+..|+..+..+.. .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999988877653 5799999999999987777778888899999999999999999 89999999
Q ss_pred HHHHHHH
Q 028237 161 IKTAATI 167 (211)
Q Consensus 161 ~~l~~~~ 167 (211)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.2e-32 Score=196.00 Aligned_cols=160 Identities=36% Similarity=0.593 Sum_probs=141.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988887777754 455667778888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++.+++.+..|+..+..... .+.|+++++||+|+.+.......+...++...+++++++||++|.|+.++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 58999999999999765566667778888888899999999999999999999987
Q ss_pred HH
Q 028237 166 TI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6e-32 Score=195.04 Aligned_cols=158 Identities=34% Similarity=0.535 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+......+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999998877777755444 455667778899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887765432 579999999999997656677777888888889999999999999999999999
Q ss_pred HH
Q 028237 164 AA 165 (211)
Q Consensus 164 ~~ 165 (211)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 65
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=8.1e-32 Score=193.41 Aligned_cols=160 Identities=43% Similarity=0.762 Sum_probs=145.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+++.+||+||+..+..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++++++.+..|+..+......+.|+++++||+|+.+......++...+++..+++++++|++++.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999988866554579999999999996666677788888888889999999999999999999999875
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.1e-32 Score=194.68 Aligned_cols=161 Identities=41% Similarity=0.639 Sum_probs=141.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|||||||+++|.+..+...+.++.+. .....+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999999888777777553 33556677888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++++++.+..|+..+..... .+.|+++++||+|+.+......++...+++..+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888765543 47899999999999766666777888888888999999999999999999999998
Q ss_pred HHH
Q 028237 166 TIY 168 (211)
Q Consensus 166 ~~~ 168 (211)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.3e-31 Score=192.72 Aligned_cols=161 Identities=46% Similarity=0.848 Sum_probs=147.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++....+.+||+||++.+...+..+++++|++|+|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999988878888888888888889998999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++++++.+..|+..+........|+++++||+|+.+......++...++...+++++++||++|.|+.++|++|++.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999998877765689999999999987666667888888999989999999999999999999999987
Q ss_pred H
Q 028237 167 I 167 (211)
Q Consensus 167 ~ 167 (211)
+
T Consensus 162 l 162 (163)
T cd01860 162 L 162 (163)
T ss_pred h
Confidence 5
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.8e-32 Score=193.43 Aligned_cols=160 Identities=31% Similarity=0.529 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|||||||+++|....+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998887777777777777788888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++.+++.+..|+..+.... .+.|+++++||+|+... ...+...+++..+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886543 47899999999998432 2344556777778999999999999999999999988
Q ss_pred HHHH
Q 028237 167 IYKK 170 (211)
Q Consensus 167 ~~~~ 170 (211)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8764
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.1e-31 Score=192.65 Aligned_cols=159 Identities=37% Similarity=0.653 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6999999999999999999999988877777765544 555677888888999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++.+++.+..|+..+..... .+.|+++++||+|+.+ ......+...+++..+++++++||++|.|++++|++|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876653 5889999999999865 345577788888888999999999999999999999987
Q ss_pred HH
Q 028237 166 TI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 70
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.5e-32 Score=199.37 Aligned_cols=161 Identities=32% Similarity=0.562 Sum_probs=138.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999888888876665 345667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEecCC
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHG-LIFMEASAKT 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~ 152 (211)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...+++..+ ++++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888876554 489999999999996533 245566778887776 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAATIYK 169 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~ 169 (211)
|.|++++|.+|++.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988863
No 71
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.7e-32 Score=195.71 Aligned_cols=158 Identities=29% Similarity=0.554 Sum_probs=138.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|||||||+.+|..+.+...+.++.+.. ....+.+++..+++.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 699999999999999999999999988888886543 3456678888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (211)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+. ..+..+++..++++.+. +++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999986 5877776554 48999999999998542 24678888999999885 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAAT 166 (211)
Q Consensus 153 g~~v~~~~~~l~~~ 166 (211)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.9e-31 Score=192.00 Aligned_cols=161 Identities=35% Similarity=0.590 Sum_probs=141.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999888777777755443 45566788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||++++.+++.+..|+..+..... .+.|+++++||+|+........++..++++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 5789999999999976666667778888888889999999999999999999998
Q ss_pred HHH
Q 028237 165 ATI 167 (211)
Q Consensus 165 ~~~ 167 (211)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.1e-31 Score=197.02 Aligned_cols=156 Identities=30% Similarity=0.573 Sum_probs=140.3
Q ss_pred EcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH
Q 028237 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (211)
Q Consensus 12 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (211)
+|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.|||++|++.|..++..|++++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888888988999888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 92 ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
.+++.+..|+..+.... .+.|+++|+||+|+..+ .+..+. ..+++..++.++++||++|.||.++|.+|++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999997764 48999999999998543 344443 467788889999999999999999999999988764
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.7e-31 Score=201.10 Aligned_cols=160 Identities=26% Similarity=0.450 Sum_probs=140.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|..+.+...+.++.+ ++....+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888878765 555677888898999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhc---------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 028237 87 DITRRETFNHLASWLEDARQHA---------NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNV 156 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~---------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v 156 (211)
|++++++++.+..|+..+.... ..+.|+++++||+|+.+.+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 9999999999999988886542 24799999999999976566778888877764 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 157 EEAFIKTAATI 167 (211)
Q Consensus 157 ~~~~~~l~~~~ 167 (211)
+++|++|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999854
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.4e-31 Score=190.66 Aligned_cols=165 Identities=42% Similarity=0.731 Sum_probs=146.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|||||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~~~ 161 (211)
|++++.+++.+..|...+..... .+.|+++++||+|+.+......++.+.+.+..+ ++++++|+++|.|+.++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888876654432 379999999999997655566788888888887 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 028237 162 KTAATIYKKI 171 (211)
Q Consensus 162 ~l~~~~~~~~ 171 (211)
++.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999888763
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5.9e-31 Score=188.85 Aligned_cols=161 Identities=39% Similarity=0.736 Sum_probs=144.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|....+...+.++.+.......+.+.+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777677777777777788889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|++++++++.+..|+..+......+.|+++++||+|+.+......++++++++..+++++++|++++.|+.++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988877766689999999999998666677788888888889999999999999999999999886
Q ss_pred H
Q 028237 167 I 167 (211)
Q Consensus 167 ~ 167 (211)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=6.2e-31 Score=189.41 Aligned_cols=160 Identities=28% Similarity=0.561 Sum_probs=140.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+||+++|.+|||||||+++|... .+...+.++.+.++....+.++ +..+++.+||++|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6778888888888877777664 56799999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.......+...+....+++++++||.++.|+.++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887664 479999999999997766666766777778888999999999999999999999
Q ss_pred HHHH
Q 028237 164 AATI 167 (211)
Q Consensus 164 ~~~~ 167 (211)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.3e-31 Score=196.17 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhcC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYRG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 78 (211)
+||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+|||||...+. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888887777766677788888999999999965432 123345789
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQ 154 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~ 154 (211)
+|++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887664 3679999999999997666666666766654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIYKKI 171 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~~ 171 (211)
|++++|+.+++.+..+-
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998887553
No 79
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-30 Score=187.55 Aligned_cols=167 Identities=48% Similarity=0.844 Sum_probs=147.6
Q ss_pred CC-cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCC
Q 028237 1 MS-YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA 79 (211)
Q Consensus 1 ~~-~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 79 (211)
|. +.+.++|+++|++|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|+..+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 55 45679999999999999999999998888777778778788788888888889999999999999999999999999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
|++++|||+.++.+++.+..|+..+......+.|+++++||+|+.+.+.......+.+.+....+++++|+++|.|+.++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999999999999998887766567999999999999766666666677787777788999999999999999
Q ss_pred HHHHHHHH
Q 028237 160 FIKTAATI 167 (211)
Q Consensus 160 ~~~l~~~~ 167 (211)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.2e-30 Score=187.32 Aligned_cols=159 Identities=50% Similarity=0.900 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888888888777888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++.+++.+..|+..+..+.. .+.|+++++||+|+.+ .....++...++...+++++++|+++|.|+.++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999988877754 6899999999999963 345677888899999999999999999999999999887
Q ss_pred H
Q 028237 166 T 166 (211)
Q Consensus 166 ~ 166 (211)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.4e-30 Score=188.48 Aligned_cols=161 Identities=35% Similarity=0.605 Sum_probs=142.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999988877777766444 566778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|++++++++.+..|...+..... .+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|.++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999888866443 589999999999997766667777888888887 7899999999999999999999
Q ss_pred HHHH
Q 028237 165 ATIY 168 (211)
Q Consensus 165 ~~~~ 168 (211)
.+++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8765
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=7.3e-31 Score=190.84 Aligned_cols=158 Identities=30% Similarity=0.584 Sum_probs=137.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEEC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (211)
|+|+|.+|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999888888765544 45667788889999999999999999999999999999999999
Q ss_pred CCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237 89 TRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQ 154 (211)
Q Consensus 89 ~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~g~ 154 (211)
+++++++.+. .|+..+.... .+.|+++++||+|+.+. ..+..++...+++..+. +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 4888776654 48999999999998642 23667778889999986 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIY 168 (211)
Q Consensus 155 ~v~~~~~~l~~~~~ 168 (211)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=6.3e-31 Score=190.38 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=140.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
..+||+++|.+|+|||||+++|.+..+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5789999999999999999999999998 888888888887777888888889999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~ 162 (211)
+|||++++.+++.+..|+..+... .+.|+++|+||+|+.+.......+...+++..++. ++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999988888765322 37899999999999654444344566777888874 799999999999999999
Q ss_pred HHHHHH
Q 028237 163 TAATIY 168 (211)
Q Consensus 163 l~~~~~ 168 (211)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998765
No 84
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=2.1e-30 Score=184.91 Aligned_cols=159 Identities=59% Similarity=0.962 Sum_probs=145.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888888899998888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++++++.+..|+..+......+.|+++++||+|+........++...++...+++++++|++++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999888776568999999999999655566788889999988999999999999999999999863
No 85
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=8.7e-31 Score=193.31 Aligned_cols=158 Identities=25% Similarity=0.426 Sum_probs=129.4
Q ss_pred eeeEEEEcCCCCCHHHHHH-HHhhCC-----CCCCCCCCcee-EEEEEE--------EEECCEEEEEEEEeCCCcchhhh
Q 028237 6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------ITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
.+||+++|..|+|||||+. ++.... +...+.+|++. +.+... +.+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 555433 44566677642 222221 25688899999999999875 3
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC-------------------CCCCC
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH-------------------RRAVS 130 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 130 (211)
+...+++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 5667899999999999999999999997 5888886654 4789999999999864 35678
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 131 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
.++++.++++++++|+++||++|.||+++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998864
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=9.2e-31 Score=188.81 Aligned_cols=160 Identities=37% Similarity=0.573 Sum_probs=136.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhhHHhhcCCcEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 86 (211)
||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766666644333 45567888889999999999885 3456778899999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC-CCHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA-QNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g-~~v~~~~~~l 163 (211)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++..+++++++||++| .|++++|.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 357999999999999766667788888999999999999999999 5999999999
Q ss_pred HHHHH
Q 028237 164 AATIY 168 (211)
Q Consensus 164 ~~~~~ 168 (211)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2.8e-30 Score=194.41 Aligned_cols=164 Identities=28% Similarity=0.399 Sum_probs=140.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc-CCcEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR-GAAGALL 84 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 84 (211)
+||+++|.+|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||++|++ ..+...++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888776 5666665557777788888889999999999998 233455666 9999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876543 579999999999997767777787888888889999999999999999999999
Q ss_pred HHHHHHHHh
Q 028237 164 AATIYKKIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
++.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998875443
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=2e-30 Score=185.64 Aligned_cols=153 Identities=18% Similarity=0.361 Sum_probs=130.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|+.|+|||||+++|..+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988887665544 3344 46678888889999999999974 34678899999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|++++.+++.+..|+..+..+.. .+.|+++|+||.|+. ..+.+..++++++++.. ++.++++||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877754 578999999999984 24567788888898876 589999999999999999999
Q ss_pred HHHH
Q 028237 163 TAAT 166 (211)
Q Consensus 163 l~~~ 166 (211)
++++
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9865
No 89
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.98 E-value=5.2e-33 Score=193.33 Aligned_cols=195 Identities=28% Similarity=0.462 Sum_probs=175.7
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+|..+|++|+|..++||||+|++++.+.|...+..+++.++..+.+.+.+.++.+.+||++|+++|+.+...||+.+.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 36789999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
.++||+.+|..+|+.+..|++.+..... .+|.++|-||+|+.+...+...+++.+++...+.++.+|+++..|+.++|.
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999877664 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CcccCCCCCcceeeccCCCCCCCC
Q 028237 162 KTAATIYKKIQD-GVFDVSNESYGIKVGYGGIPGPSG 197 (211)
Q Consensus 162 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 197 (211)
+|++++.+++.+ .+....+.+++.+....+.|++.+
T Consensus 175 YLaeK~~q~~kq~~~~~~~~q~sSsn~~~stsp~s~t 211 (246)
T KOG4252|consen 175 YLAEKLTQQKKQSLNANERKQSSSSNSTYSTSPPSTT 211 (246)
T ss_pred HHHHHHHHHHHHHhhhchhhccccCCCCccCCCCcce
Confidence 999999999887 355555555555555454444443
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=3.4e-30 Score=187.33 Aligned_cols=159 Identities=27% Similarity=0.521 Sum_probs=136.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|..+.+...+.++.. ......+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998877777754 333456778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (211)
|++++.+++.+. .|+..+... ..+.|+++++||+|+.+. ..+..+++..+++..++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 577777655 568999999999998543 24567788889988886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAATI 167 (211)
Q Consensus 153 g~~v~~~~~~l~~~~ 167 (211)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 91
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=7.1e-30 Score=185.60 Aligned_cols=157 Identities=27% Similarity=0.538 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||++++..+.+...+.++. .+.....+.+++..+++.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888887774 4555566778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEASAKT 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (211)
|++++.+++.+. .|+..+.... .+.|+++++||.|+.+ .+.+..+++..+++..+. +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 5777776432 4789999999999853 345677888999999887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAA 165 (211)
Q Consensus 153 g~~v~~~~~~l~~ 165 (211)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.1e-29 Score=182.63 Aligned_cols=162 Identities=39% Similarity=0.637 Sum_probs=141.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||+++|+...+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777755443 455677888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|++++.++..+..|+..+..... .+.|+++|+||+|+.+.......+...+++.++++++++||++|.|+.++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 58999999999999764456677778888888999999999999999999999998
Q ss_pred HHHH
Q 028237 166 TIYK 169 (211)
Q Consensus 166 ~~~~ 169 (211)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=6.2e-32 Score=179.38 Aligned_cols=161 Identities=46% Similarity=0.840 Sum_probs=149.6
Q ss_pred EEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC
Q 028237 11 IIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 11 v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
++|.+++|||+|+-+|..+.|-. .-..++|+++..+.+..+++.+++++|||+|+++|++....||+.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998888776653 44567899999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 90 RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
+..++++.+.|+.++..+....+.+++++||+|+..++.+..++.+++++.+++|+.++||++|.|++..|-.|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999988889999999999998888899999999999999999999999999999999999998876
Q ss_pred HH
Q 028237 170 KI 171 (211)
Q Consensus 170 ~~ 171 (211)
..
T Consensus 162 ~~ 163 (192)
T KOG0083|consen 162 LK 163 (192)
T ss_pred hc
Confidence 64
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=2.3e-29 Score=180.23 Aligned_cols=158 Identities=39% Similarity=0.633 Sum_probs=140.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+|+|++|||||||+++|+...+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777755 5556667778778999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
++++++++.+..|+..+..... .+.|+++++||+|+.+......++++.+....+++++++|++++.|+.++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888876655 689999999999997766677888899999989999999999999999999999875
No 95
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.8e-29 Score=184.56 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=124.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|..+||||||+++|..+.+. .+.++.+.++. .+.. ..+.+.+||+||++.+..+|..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999887765 45666666543 2333 35889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~ 158 (211)
|||++++++++.+..++..+.... ..+.|++|++||+|+.+. ...+++.+...... +.++++||++|.|+.+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 999999999988877766654322 247899999999998653 33444444332221 2466899999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 159 AFIKTAATIYKK 170 (211)
Q Consensus 159 ~~~~l~~~~~~~ 170 (211)
+|+||.+++.++
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999887654
No 96
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=5.3e-29 Score=184.77 Aligned_cols=160 Identities=25% Similarity=0.408 Sum_probs=135.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|.+|+|||||+++|+...+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988877766643 4555667788888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH-RRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
++++.+++.+..|+..+..... .+.|+++++||+|+.+ ...+..++..+... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888876654 5799999999999865 34444545544443 4567899999999999999999999
Q ss_pred HHHH
Q 028237 165 ATIY 168 (211)
Q Consensus 165 ~~~~ 168 (211)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8775
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.7e-28 Score=179.35 Aligned_cols=163 Identities=36% Similarity=0.544 Sum_probs=140.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+|+|.+|+|||||+++|....+...+.++....+ ...+.+.+..+.+.+||+||++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888776766644443 455667777889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
|+++..+++.+..|+..+..... .+.|+++++||+|+...+....++...+++..+++++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999998887766543 57899999999999765666677778888888899999999999999999999999
Q ss_pred HHHHH
Q 028237 166 TIYKK 170 (211)
Q Consensus 166 ~~~~~ 170 (211)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 88655
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=6.2e-29 Score=182.17 Aligned_cols=165 Identities=22% Similarity=0.347 Sum_probs=132.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999998877644 566566665555544 3467899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEecCCCCCHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------HGLIFMEASAKTAQNVE 157 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~g~~v~ 157 (211)
|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ ....++.+.+... .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999998888888877755432 5799999999999854 2344555554431 12468899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 028237 158 EAFIKTAATIYKKIQD 173 (211)
Q Consensus 158 ~~~~~l~~~~~~~~~~ 173 (211)
++|++|.+.+.+..+.
T Consensus 160 ~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 160 EGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999766543
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.5e-29 Score=181.79 Aligned_cols=154 Identities=20% Similarity=0.348 Sum_probs=123.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|.+|+|||||+++|..+.+. .+.++.+.++. .+.. ..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999877664 35566666553 2333 45889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~ 158 (211)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..++++.+.+. ..++++++||++|.|+.+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999988888776664432 25789999999999864 2456666665432 234689999999999999
Q ss_pred HHHHHHH
Q 028237 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~l~~ 165 (211)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999865
No 100
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.1e-28 Score=179.59 Aligned_cols=159 Identities=32% Similarity=0.591 Sum_probs=134.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+|+|++|||||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999999888888766555 345677888899999999999999998888999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (211)
|++++++++.+. .|+..+.... .+.|+++++||+|+.+. ..+...+.+.+++..+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998886 4777665543 47899999999998542 22345677888887775 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAATI 167 (211)
Q Consensus 153 g~~v~~~~~~l~~~~ 167 (211)
|.|++++|.++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3.7e-29 Score=181.14 Aligned_cols=156 Identities=22% Similarity=0.382 Sum_probs=126.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|.+|||||||+++|.+..+.. +.+|.+..+. .+.+ ..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886643 5666555553 2333 35899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~g~~v~~~~ 160 (211)
++++++++.+..|+..+..... .+.|+++++||+|+.+ ....++++.++...+ +.++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999988887765432 4689999999999854 356666766654322 358899999999999999
Q ss_pred HHHHHHHHHH
Q 028237 161 IKTAATIYKK 170 (211)
Q Consensus 161 ~~l~~~~~~~ 170 (211)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876554
No 102
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=9.6e-29 Score=181.57 Aligned_cols=166 Identities=39% Similarity=0.583 Sum_probs=153.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|+|||+|..+|....|...+.++.. +.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 47999999999999999999999999999999966 66688888999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|++++..+|+.+..+++.+.+... ...|+++|+||+|+.+.+.+..++++.++..++++++|+||+.+.+++++|..|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 999999999999999999855444 5689999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 028237 165 ATIYKKIQ 172 (211)
Q Consensus 165 ~~~~~~~~ 172 (211)
+.+.....
T Consensus 162 r~~~~~~~ 169 (196)
T KOG0395|consen 162 REIRLPRE 169 (196)
T ss_pred HHHHhhhc
Confidence 98887444
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=7.3e-30 Score=183.93 Aligned_cols=153 Identities=22% Similarity=0.350 Sum_probs=126.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
.|+++|.+|+|||||+++|.+..+...+.++.+... ..++...+++.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888777778776543 3345557899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH----HHHHHHHHHcCCcEEEEecCC------CCCHH
Q 028237 88 ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST----EEGEQFAKEHGLIFMEASAKT------AQNVE 157 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------g~~v~ 157 (211)
.+++.++..+..|+..+.... .+.|+++|+||+|+.+...... .++..++++.++.++++||++ ++||.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999998888887775443 5899999999999865442211 123556666778899999998 99999
Q ss_pred HHHHHHHH
Q 028237 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~l~~ 165 (211)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=6.4e-29 Score=178.14 Aligned_cols=152 Identities=20% Similarity=0.375 Sum_probs=118.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|..+.+. .+.++.+.+.. .+.. ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 45666665543 2333 3588999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHH-HHHH----HHcCCcEEEEecCCCCCHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEG-EQFA----KEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
|++++.+++.+..++..+.... ..+.|+++++||+|+.+. ....++ ..+. ...++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999998888776664332 246899999999998542 223332 2221 1223457899999999999999
Q ss_pred HHHHH
Q 028237 161 IKTAA 165 (211)
Q Consensus 161 ~~l~~ 165 (211)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.4e-29 Score=183.14 Aligned_cols=156 Identities=20% Similarity=0.336 Sum_probs=122.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|.+|+|||||+++|..+.+. .+.++.+.++. .+.. ..+.+.+||++|++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999877664 45566665553 3333 35889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~ 158 (211)
|||++++++++.+..++..+.... ..+.|++|++||.|+.+. ...+++..... ...+.++++||++|.|+.+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 999999999999888877765432 247899999999998643 23333333222 1233577899999999999
Q ss_pred HHHHHHHHH
Q 028237 159 AFIKTAATI 167 (211)
Q Consensus 159 ~~~~l~~~~ 167 (211)
+|+||.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998765
No 106
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=3.2e-28 Score=179.04 Aligned_cols=162 Identities=30% Similarity=0.528 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888776666654444 345667888889999999999988877778889999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC----------CCCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQ 154 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~ 154 (211)
|++++++++.+. .|+..+..+. .+.|+++|+||+|+.+ .+.+..++...+++..++ +++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 5888876554 4699999999999854 234556778888888885 79999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIYKK 170 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~ 170 (211)
|++++|+++.+.+...
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877544
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=4.2e-28 Score=175.70 Aligned_cols=157 Identities=32% Similarity=0.608 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|.+..+...+.++.. +.........+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999998777776644 444555677888899999999999998888888899999999999
Q ss_pred ECCCHhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCCC-----------CCCHHHHHHHHHHcCC-cEEEEecCCC
Q 028237 87 DITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRR-----------AVSTEEGEQFAKEHGL-IFMEASAKTA 153 (211)
Q Consensus 87 d~~~~~~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~g 153 (211)
|++++.++..... |+..+.... .+.|+++|+||+|+.+.. .+..++...+....++ +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999998877654 666655544 389999999999986543 2346677888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~v~~~~~~l~~ 165 (211)
.|+.++|.+|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.8e-28 Score=178.48 Aligned_cols=160 Identities=24% Similarity=0.363 Sum_probs=124.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|++|+|||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998776654 5566665543 3333 35889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~ 158 (211)
|||+++++++..+..++..+... ...+.|++|++||.|+.+. ...+++..... ...+.++++||++|.|+.+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998888776665332 1246899999999998542 23333322221 1223577999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 159 AFIKTAATIYKKI 171 (211)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (211)
+|++|.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.3e-27 Score=179.49 Aligned_cols=166 Identities=31% Similarity=0.541 Sum_probs=145.0
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 45567999999999999999999998888888889999998888888888889999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|+++|.|+.+.|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887654 47899999999998543 23233 3456777888999999999999999999
Q ss_pred HHHHHHHHH
Q 028237 162 KTAATIYKK 170 (211)
Q Consensus 162 ~l~~~~~~~ 170 (211)
+|++.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999988754
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=3.7e-28 Score=176.54 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=123.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++|||||||+++|.+..+ ..+.++.+. ....+.++ .+.+.+||+||++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4468999999999999999999998744 344555453 33344454 478999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.++.....|+..+... ...+.|+++++||+|+.+. ...+++..+.. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999998888887766443 2358999999999998653 24555555543 235689999999999999
Q ss_pred HHHHHHHH
Q 028237 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~l~~ 165 (211)
++|+++++
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.2e-27 Score=177.00 Aligned_cols=148 Identities=23% Similarity=0.419 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-----CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-----NKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+||+++|..|+|||||+++|.++.+...+.+|++.++..+.+.+. +..+.+.|||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999998899998888877777764 467899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEecCCCCCCCCCCHHH----HHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHA-------------------NANMTIMLIGNKCDLAHRRAVSTEE----GEQFA 138 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~ 138 (211)
+|+|||++++.+++.+..|+.++.... ..+.|++||+||.|+.+++...... ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886532 2478999999999997655444432 34567
Q ss_pred HHcCCcEEEEecCCCC
Q 028237 139 KEHGLIFMEASAKTAQ 154 (211)
Q Consensus 139 ~~~~~~~~~~sa~~g~ 154 (211)
+..+++.++.+..++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8889998888887653
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.2e-27 Score=171.38 Aligned_cols=159 Identities=28% Similarity=0.372 Sum_probs=124.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|..+.+...+..+ ...+ .....+.+..+++.+||++|...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886554332 2222 233455667789999999999988888888899999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHc-C-CcEEEEecCCCCCHHHHHH
Q 028237 87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEH-G-LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~-~-~~~~~~sa~~g~~v~~~~~ 161 (211)
|++++.+++.+. .|+..+.... .+.|+++++||+|+.+.... ..+++..++... + .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999986 5777776654 48999999999999664432 123333444433 2 3799999999999999999
Q ss_pred HHHHHHH
Q 028237 162 KTAATIY 168 (211)
Q Consensus 162 ~l~~~~~ 168 (211)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887664
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=7e-28 Score=173.02 Aligned_cols=152 Identities=19% Similarity=0.323 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+|+++|.+|||||||+++|.+..+ ...+.++.+.+.. .+. ...+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4556666665432 222 24588999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 028237 87 DITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~ 158 (211)
|++++.++..+..|+..+.... ..+.|+++++||+|+.+. ....+...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888888877765432 247999999999998643 22333322221 1234589999999999999
Q ss_pred HHHHHHH
Q 028237 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~l~~ 165 (211)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999875
No 114
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=3.8e-27 Score=161.75 Aligned_cols=162 Identities=23% Similarity=0.364 Sum_probs=131.2
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..++|+++|..||||||++++|.+.. .+...|+.+.+. ++..+ +.+++++||.+|+....+.|++||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4668999999999999999999999876 345555544444 44444 459999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHH------HHHHHHHcCCcEEEEecCCCCC
Q 028237 83 LLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEE------GEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
|+|+|..|+..+++....+..+... .-.+.|++|++||.|++.. .+.+. .+.+++...++++.|||.+|++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 9999999999988877766665432 2268999999999999632 22222 3455567789999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKKI 171 (211)
Q Consensus 156 v~~~~~~l~~~~~~~~ 171 (211)
+.+.++||+..+.++.
T Consensus 166 l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998853
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.4e-27 Score=172.42 Aligned_cols=154 Identities=27% Similarity=0.373 Sum_probs=121.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|..+.+.. +.++.+.++. .+.++ .+++.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35799999999999999999999877754 4556555543 33333 5889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~ 158 (211)
|+|+++++++.....++..+..... .+.|+++++||+|+.+. ...+++.+.. +..+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999988887777666644332 47999999999998652 2344432222 23456799999999999999
Q ss_pred HHHHHHH
Q 028237 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~l~~ 165 (211)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999875
No 116
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=175.64 Aligned_cols=165 Identities=32% Similarity=0.586 Sum_probs=146.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
...+|++|+|..++|||+|+-.+..+.|+..+.||+. +-+...+.++ ++.+++.+|||+|+++|++++...|..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999988 5557778885 9999999999999999999998899999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028237 83 LLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
+++|++.++++++++. .|+.++..+. ++.|+|+|++|.|+.+. ..+..++.+.++++.|+ .|+|+
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999966 5888887776 69999999999999742 35678889999999995 59999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
||++..|+.++|+..++.....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcc
Confidence 9999999999999888866654
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=9.2e-28 Score=173.50 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=120.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|.+|||||||+++|.+. +...+.++.+.+. ..+... .+.+.+||+||+..+..++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 6666777766553 334443 5889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHH------HHHHHHcC--CcEEEEecCCC-----
Q 028237 88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEG------EQFAKEHG--LIFMEASAKTA----- 153 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~sa~~g----- 153 (211)
++++.+++.+..|+..+..... .+.|+++|+||.|+.+.. ...++ ..++++.+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999998888765533 589999999999986543 22222 22332233 46888999998
Q ss_pred -CCHHHHHHHHHH
Q 028237 154 -QNVEEAFIKTAA 165 (211)
Q Consensus 154 -~~v~~~~~~l~~ 165 (211)
.|+.+.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.1e-27 Score=172.71 Aligned_cols=158 Identities=29% Similarity=0.438 Sum_probs=127.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+++|+.|||||||+++|....... ..||.+.+. ..+.+.+ +.+.+||.+|+..+..+|..|++.+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 4678999999999999999999998765433 445545444 4444554 7899999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEecCCCCC
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------HGLIFMEASAKTAQN 155 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~g~~ 155 (211)
|||+|.++++.+.+....+..+..... .+.|++|++||.|+.+ ....+++...... ..+.++.+||.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999988888877766655433 5899999999999865 3556666654432 234599999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATI 167 (211)
Q Consensus 156 v~~~~~~l~~~~ 167 (211)
+.+.|+||.+++
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 119
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2e-26 Score=167.42 Aligned_cols=142 Identities=41% Similarity=0.680 Sum_probs=128.4
Q ss_pred CCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc
Q 028237 29 KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 108 (211)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~ 108 (211)
+.|...+.+|++.++....+.+++..+++.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677889999999988889999999999999999999999999999999999999999999999999999998887665
Q ss_pred CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 109 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
..+.|++||+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|.+|++.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999976666788888899998899999999999999999999999887653
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=5.6e-27 Score=172.81 Aligned_cols=156 Identities=28% Similarity=0.348 Sum_probs=125.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
....+|+++|++|||||||+++|.+..+. .+.++.+.+. ..+.+++ +.+.+||+||+..+..++..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999987764 4455544433 3444554 78899999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----------------cCCcEE
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----------------HGLIFM 146 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 146 (211)
+|+|+++..+++....++..+..... .+.|+++++||+|+.. .+..++++.+... ..++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999988888887777755433 5799999999999854 4556666666543 224589
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 028237 147 EASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~ 166 (211)
++||++|.|+.++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=5.7e-27 Score=169.21 Aligned_cols=152 Identities=26% Similarity=0.389 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|+|+|++|+|||||+++|.+... ...+.++.+... ..+.++ ...+.+||+||++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 223344444444 234444 4799999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCcEEEEecCCC
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-------HGLIFMEASAKTA 153 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~g 153 (211)
+++|+|+.+++++.....++..+.... ..+.|+++++||+|+.+. ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888877765543 258999999999998553 344555544433 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~v~~~~~~l~~ 165 (211)
.|++++|+||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999875
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=4.1e-27 Score=168.77 Aligned_cols=152 Identities=24% Similarity=0.424 Sum_probs=118.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++|||||||+++|.+..+... .++.+.++ ..+... ..+.+.+||++|++.+..++..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999887543 45555443 333333 35799999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH------HHcCCcEEEEecCCCCCHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
+.++.++..+..|+..+..... .+.|+++++||+|+.+. ...+++.... ...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999988888887777654332 58999999999998542 2233333222 2234569999999999999999
Q ss_pred HHHHH
Q 028237 161 IKTAA 165 (211)
Q Consensus 161 ~~l~~ 165 (211)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.5e-27 Score=168.29 Aligned_cols=151 Identities=21% Similarity=0.334 Sum_probs=120.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|.+|||||||++++.+... ....++.+.+. ..+.+. ...+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998874 34455545443 334443 4789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+++++++..+..++..+.... ..+.|+++++||+|+.+.. ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999998888877765543 3589999999999986533 3344443332 2346799999999999999999
Q ss_pred HHHH
Q 028237 162 KTAA 165 (211)
Q Consensus 162 ~l~~ 165 (211)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.5e-26 Score=165.60 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=114.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+|+|++++|||||+++|....+.. +.++.+.+.. .+.. ....+.+||+||++.+..++..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 3455454442 2333 35789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
++++.++.....++..+.. ....+.|+++++||+|+.+.. ...++..... ..+++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887766665554433 222579999999999986432 2333322211 1234699999999999999999
Q ss_pred HHHH
Q 028237 162 KTAA 165 (211)
Q Consensus 162 ~l~~ 165 (211)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=4.5e-26 Score=176.56 Aligned_cols=139 Identities=25% Similarity=0.515 Sum_probs=121.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-------------EEEEEEEEeCCCcchhhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-------------KPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~ 71 (211)
..+||+|+|..|+|||||+++|..+.+...+.++++.++....+.+++ ..+.++|||++|++.|..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 358999999999999999999999999888899999988877777642 4688999999999999999
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC------------CCCcEEEEEecCCCCCCC---C---CCHHH
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------------ANMTIMLIGNKCDLAHRR---A---VSTEE 133 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~~ 133 (211)
+..|+++++++|+|||+++..+++.+..|+..+..+.. .+.|++||+||+|+.+++ . +..++
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~ 179 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA 179 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence 99999999999999999999999999999999977631 258999999999996542 2 35788
Q ss_pred HHHHHHHcCC
Q 028237 134 GEQFAKEHGL 143 (211)
Q Consensus 134 ~~~~~~~~~~ 143 (211)
++++++++++
T Consensus 180 a~~~A~~~g~ 189 (334)
T PLN00023 180 ARQWVEKQGL 189 (334)
T ss_pred HHHHHHHcCC
Confidence 9999999874
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=4.8e-26 Score=167.00 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=121.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|.+|||||||+++|.+..+.. +.++.+.+. ..+.+. .+++.+||+||+..+..++..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999876643 334433332 233333 478999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEec
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------------HGLIFMEASA 150 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 150 (211)
+|+|++++.++.....++..+.... ..+.|+++++||+|+.. ..+.++++..... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999998888877776664432 25789999999999854 3455655544321 1234999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAAT 166 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~ 166 (211)
++|.|++++++||..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=4.2e-26 Score=162.74 Aligned_cols=152 Identities=23% Similarity=0.354 Sum_probs=120.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
.|+|+|++|||||||+++|.+..+...+.++.+..+.. +.... +.+.+||+||++.+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 38999999999999999999999888888877766543 33333 789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHH
Q 028237 88 ITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
++++.++.....++..+.... ..+.|+++++||+|+.+.. ...+..... ....++++++|+++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999988888777766654432 2578999999999986532 222222221 12345789999999999999999
Q ss_pred HHHH
Q 028237 162 KTAA 165 (211)
Q Consensus 162 ~l~~ 165 (211)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2.7e-25 Score=162.20 Aligned_cols=154 Identities=25% Similarity=0.281 Sum_probs=113.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCC------CceeEEEEEEEEE-----CCEEEEEEEEeCCCcchhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMITI-----DNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~ 69 (211)
+|+++|..++|||||+++|++.. +...+.+ +.+.++....+.+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111211 1234444333332 5667899999999999999
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc---EE
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI---FM 146 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 146 (211)
.++..+++.+|++|+|||+++..+......|.... ..+.|+++++||+|+.+.. .......+++..+++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876655555554322 2378999999999985422 222334556666653 89
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028237 147 EASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~~ 167 (211)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 129
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=3e-25 Score=175.50 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=123.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhh---HHhhcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSIT---RSYYRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~ 78 (211)
...|+|+|.+|||||||+++|+.........+.++.....-.+.+.+ ..++.+||+||..+ ...+. ..+++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 45799999999999999999998765544444445555555555532 35789999999642 11233 334567
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
++++|+|+|+++.++++.+..|..++..+.. .++|+++|+||+|+.+.........+.+....+++++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988788888899988877654 47899999999999654433334455555666788999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIYKK 170 (211)
Q Consensus 157 ~~~~~~l~~~~~~~ 170 (211)
+++|++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.2e-25 Score=160.21 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh---------hhhHHhhc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---------SITRSYYR 77 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 77 (211)
.+|+++|.+|+|||||+++|.+..+.....+..+.......+ ....+.+.+|||||+.... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987654333222222322222 2235899999999974211 11111123
Q ss_pred CCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 78 GAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
.+|++|+|+|+++..+ .+....|+..+.... .+.|+++++||+|+.+.... .....+....+++++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCC
Confidence 4689999999998654 355556777765443 37899999999998654332 224555665678899999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATI 167 (211)
Q Consensus 156 v~~~~~~l~~~~ 167 (211)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.8e-25 Score=160.74 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=112.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----hhhhhhHHh---hcCCc
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----SFRSITRSY---YRGAA 80 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d 80 (211)
+|+|+|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654322222222222222233333 2489999999963 222233333 44699
Q ss_pred EEEEEEECCCH-hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 028237 81 GALLVYDITRR-ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNV 156 (211)
Q Consensus 81 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v 156 (211)
++++|+|++++ .+++.+..|++.+..... .+.|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888766542 37899999999998654332 3444455555 3778999999999999
Q ss_pred HHHHHHHHHH
Q 028237 157 EEAFIKTAAT 166 (211)
Q Consensus 157 ~~~~~~l~~~ 166 (211)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.9e-24 Score=153.80 Aligned_cols=158 Identities=33% Similarity=0.485 Sum_probs=127.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987777777878888777777777778999999999999999999999999999999
Q ss_pred EECCCH-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 86 YDITRR-ETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 86 ~d~~~~-~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|+... .++.... .+...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998776 5555544 55555555444488999999999996543 23333344444456679999999999999999987
Q ss_pred H
Q 028237 164 A 164 (211)
Q Consensus 164 ~ 164 (211)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 133
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.3e-25 Score=156.02 Aligned_cols=158 Identities=21% Similarity=0.317 Sum_probs=131.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|..+|||||++++|..+..-.. .||+|.......+ +.+++.+||.+|++.++.+|++|+++.+++||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 468999999999999999999988777555 7777776655444 36999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~ 158 (211)
|+|.+|.+.+..+...+..+..+.+ .+.|+++++||.|+++ ..+..++...... ..+.+..++|.+|+|+.|
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 9999999999998887777666655 6899999999999965 3555555444333 345688999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 159 AFIKTAATIYK 169 (211)
Q Consensus 159 ~~~~l~~~~~~ 169 (211)
.++|+.+.+..
T Consensus 169 gl~wl~~~~~~ 179 (181)
T KOG0070|consen 169 GLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=7.7e-25 Score=163.19 Aligned_cols=157 Identities=19% Similarity=0.181 Sum_probs=114.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhhhHH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES---------FRSITRS 74 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 74 (211)
+..++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+ ...+.+||+||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4468999999999999999999998875443333334444444444444 23789999999732 22111 2
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~ 154 (211)
.+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+.... ..+....+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3678999999999999888777777776666554457899999999998553221 13444556789999999999
Q ss_pred CHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATI 167 (211)
Q Consensus 155 ~v~~~~~~l~~~~ 167 (211)
|+.++|++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=3.5e-24 Score=155.52 Aligned_cols=154 Identities=23% Similarity=0.345 Sum_probs=115.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|++|||||||++++.+..+.. ..++.+.+. ..+...+ ..+.+||++|+..+...+..+++.+|++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 36899999999999999999999876542 444445433 3344444 788999999999998899999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-----GLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~g~~v~~ 158 (211)
|+|+.+..++.....++..+... ...+.|+++++||+|+.+.. ..+++....... .++++++||++|.|+++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 99999988888777766555433 23479999999999985432 222222221111 12478999999999999
Q ss_pred HHHHHHH
Q 028237 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~l~~ 165 (211)
+|+||++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999975
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.7e-24 Score=155.55 Aligned_cols=152 Identities=20% Similarity=0.168 Sum_probs=106.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC---CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.|+|+|.+|+|||||+++|.+.. +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 3223333334444444455542 468999999999998877778889999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHH---cCCcEEEEecCCCCC
Q 028237 84 LVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKE---HGLIFMEASAKTAQN 155 (211)
Q Consensus 84 ~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~g~~ 155 (211)
+|+|+++ +++.+.+ ..+... ...|+++++||+|+.+... ...++....... .+.+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333322 222221 1249999999999865321 112334444444 457899999999999
Q ss_pred HHHHHHHHHH
Q 028237 156 VEEAFIKTAA 165 (211)
Q Consensus 156 v~~~~~~l~~ 165 (211)
++++|..+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 137
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=4.7e-24 Score=145.00 Aligned_cols=174 Identities=23% Similarity=0.317 Sum_probs=146.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCCceeEEEEEEE-EECCEEEEEEEEeCCCcchh-hhhhHHhhcCCc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMI-TIDNKPIKLQIWDTAGQESF-RSITRSYYRGAA 80 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 80 (211)
...||+|+|..++|||+++++|+..... ....+|+.. ++...+ +-++..-.+.|+||.|...+ ..+.++|++.+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3679999999999999999998876543 344455433 334444 33566678999999998887 678999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
++++||+..++++|+.+..+...+..+.+ ..+|++|++||+|+.+..++..+-...|++...+.++++++++...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999999998888888777 68999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCC
Q 028237 160 FIKTAATIYKKIQDGVFDVS 179 (211)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~ 179 (211)
|.++...+.+-..+..+..+
T Consensus 167 f~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHHHHhccCCcccccCcch
Confidence 99999988776665554443
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=2.1e-23 Score=157.08 Aligned_cols=169 Identities=38% Similarity=0.537 Sum_probs=138.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|+.|||||||+++|....+...+.++.+..+...........+++.+||++|++++..++..|+..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999999999988888777776666688999999999999999999999999999999
Q ss_pred EECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC------------CCHHHHHHHHHHc---CCcEEEEe
Q 028237 86 YDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEH---GLIFMEAS 149 (211)
Q Consensus 86 ~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~s 149 (211)
+|..+ ....+....|...+........|+++++||+|+..... ............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 55566677788888777655799999999999966532 2222222222222 23389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhcC
Q 028237 150 AK--TAQNVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 150 a~--~g~~v~~~~~~l~~~~~~~~~~~ 174 (211)
++ ++.++.++|..+.+.+.+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 99 99999999999999998765443
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.9e-24 Score=152.08 Aligned_cols=134 Identities=21% Similarity=0.228 Sum_probs=100.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-----hhhhhhHHhhcCCcEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA 82 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 82 (211)
||+++|.+|+|||||+++|.+..+. +.++.+.++ .. .+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 223322222 11 589999972 3444433 58999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~~~ 161 (211)
|+|||++++.++.. ..|...+ ..|+++++||+|+.+. ....++.+++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887654 2333221 3499999999998653 3456677788887776 799999999999999999
Q ss_pred HHH
Q 028237 162 KTA 164 (211)
Q Consensus 162 ~l~ 164 (211)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.6e-23 Score=146.68 Aligned_cols=153 Identities=50% Similarity=0.815 Sum_probs=123.7
Q ss_pred EEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC
Q 028237 11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 11 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 45555554 7777777777777899999999999998888888999999999999999
Q ss_pred CHhhHHHHHHHH-HHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 90 RRETFNHLASWL-EDARQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 90 ~~~~~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
++.+......|+ .........+.|+++++||+|+.+........ ...+.....++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888773 33334444689999999999986544332222 4455566678999999999999999999986
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.1e-23 Score=150.58 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=112.5
Q ss_pred EEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------hhHHhhc--CCcEE
Q 028237 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA 82 (211)
Q Consensus 11 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~ 82 (211)
|+|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998876555556556666666666665 5799999999876653 4566664 89999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|+|+.++.... .+...+.. .++|+++++||+|+.+...... ....+....+++++++|+.++.|+.++|++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865422 33333332 3789999999999965443332 345677777899999999999999999999
Q ss_pred HHHHH
Q 028237 163 TAATI 167 (211)
Q Consensus 163 l~~~~ 167 (211)
|.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88753
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.5e-24 Score=158.41 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=113.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh--CCCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 72 (211)
-+|+++|.+++|||||+++|+. ..+.... ..+.+.+.......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443332 1233555555555566667899999999999999999
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcCCc
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAK-------EHGLI 144 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 144 (211)
..+++.+|++++|||+++.. ......++..+.. .+.|+++++||+|+.+... ...+++..+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2222233333322 3789999999999864322 11334444442 23678
Q ss_pred EEEEecCCCCCHHHH------HHHHHHHHHHHHh
Q 028237 145 FMEASAKTAQNVEEA------FIKTAATIYKKIQ 172 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~------~~~l~~~~~~~~~ 172 (211)
++++||++|.|+.++ +.+|++++.+..+
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 999999999887554 4455555555443
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.7e-23 Score=151.09 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=110.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.|+|+|.+|+|||||+++|....+.....+..+.+.....+... +....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888776555444444433444433 13578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHH------HcCCcEEEEecCCCCCHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAK------EHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~sa~~g~~v~~~ 159 (211)
|+++....+.. ..+..+.. .+.|+++++||+|+.+..... ......+.. ...++++++|+.+|.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99874322211 11222222 378999999999986432111 111111111 12357999999999999999
Q ss_pred HHHHHHHH
Q 028237 160 FIKTAATI 167 (211)
Q Consensus 160 ~~~l~~~~ 167 (211)
|++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998754
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.7e-23 Score=165.42 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=118.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhHHh---hcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITRSY---YRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~ 78 (211)
...|+|+|.++||||||+++|+.........+.++.......+.+.+ ..++.+||+||..+. ..+...| ++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 45899999999999999999998765443333334444444455543 468899999997421 2333344 457
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 79 AAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 79 ~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
++++++|+|+++. ++++.+..|..++..+.. .++|++||+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999986 677778888887766543 4789999999999865422 233445566666788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATI 167 (211)
Q Consensus 154 ~~v~~~~~~l~~~~ 167 (211)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4.6e-24 Score=150.12 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=107.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch------hhhhhHHhh--cC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES------FRSITRSYY--RG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~ 78 (211)
|+|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..+.++|+||... ...+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999998777777777777666677666 7888999999432 233445554 68
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~ 158 (211)
.|++|+|+|+++.+.-.. +..++.. .+.|+++++||+|...+..... +...+.+..++|++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987543222 2222222 3899999999999855443322 36677778899999999999999999
Q ss_pred HHHHH
Q 028237 159 AFIKT 163 (211)
Q Consensus 159 ~~~~l 163 (211)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98864
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=3.8e-24 Score=159.10 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=105.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC-----------cchhhhhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-----------QESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~ 72 (211)
...++|+++|.+|+|||||+++|.+..+.....++ .+.....+.+. .+.+||||| .+.+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45689999999999999999999988766554443 44443334333 588999999 45666666
Q ss_pred HHhhc----CCcEEEEEEECCCHhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 028237 73 RSYYR----GAAGALLVYDITRRETF-N---------HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA 138 (211)
Q Consensus 73 ~~~~~----~~d~~i~v~d~~~~~~~-~---------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 138 (211)
..++. .++++++|+|..+.... + ....+...+. ..+.|+++|+||+|+.+.. .+...++.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 66654 35688888887643211 0 0011122222 2379999999999985432 33455555
Q ss_pred HHcCC---------cEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 139 KEHGL---------IFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 139 ~~~~~---------~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
+..+. +++++||++| |++++|++|.+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 55554 4899999999 9999999999876543
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=4.7e-23 Score=164.26 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=114.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRS 74 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 74 (211)
+..++|+++|.+|+|||||+|+|++........+..+.++....+.+.+ ...+.+|||+|.. .|... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 3458999999999999999999999875544444445566666677743 3588999999972 22222 23
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~ 154 (211)
.+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+. .....+ .....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-----~~v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-----PRIERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-----HhHHHH-HhCCCCEEEEEccCCC
Confidence 4789999999999999888777776666665554457899999999998542 122222 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAAT 166 (211)
Q Consensus 155 ~v~~~~~~l~~~ 166 (211)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 148
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=145.54 Aligned_cols=156 Identities=20% Similarity=0.326 Sum_probs=126.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+.+.++|..+||||||+|....+.+.+...|+.|.+. ..+....+.+.+||.+|+..|+.+|..|++.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 57899999999999999999999888888888887776 44555678999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHH-HHhcCCCCcEEEEEecCCCCCCCCCCHHH-HHHH----HHHcCCcEEEEecCCCCCHHHH
Q 028237 86 YDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQF----AKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~----~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
+|+.+++.+...+..+..+ .+....++|++|++||.|+++. ..... ++++ .....+.+|.+|+++..|++-+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 9999999887777655554 4444579999999999998653 22222 2221 2223345899999999999999
Q ss_pred HHHHHHHH
Q 028237 160 FIKTAATI 167 (211)
Q Consensus 160 ~~~l~~~~ 167 (211)
.+||++.-
T Consensus 174 ~~Wli~hs 181 (186)
T KOG0075|consen 174 LDWLIEHS 181 (186)
T ss_pred HHHHHHHh
Confidence 99998853
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=8.6e-23 Score=158.19 Aligned_cols=153 Identities=19% Similarity=0.122 Sum_probs=105.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhcCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYRGA 79 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~ 79 (211)
+|+|+|.+|+|||||+|+|++...........++......+...+ ..++.+|||||..... .....+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999876543332222222233333333 3579999999965321 1234567899
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHH
Q 028237 80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEE 158 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~ 158 (211)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.. ...+....+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999866543 333333333 378999999999985422 122334445444454 799999999999999
Q ss_pred HHHHHHHHH
Q 028237 159 AFIKTAATI 167 (211)
Q Consensus 159 ~~~~l~~~~ 167 (211)
++++|.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999988765
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=4.8e-23 Score=149.71 Aligned_cols=155 Identities=20% Similarity=0.217 Sum_probs=107.9
Q ss_pred EEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhh---HHhhcCCcEEE
Q 028237 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSIT---RSYYRGAAGAL 83 (211)
Q Consensus 11 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~i 83 (211)
|+|++|||||||+++|.+........+..+.......+.+.+ ...+.+||+||.... ..++ ..+++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865322222223333333344441 467899999997432 2222 33577899999
Q ss_pred EEEECCCH------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237 84 LVYDITRR------ETFNHLASWLEDARQHAN-------ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 84 ~v~d~~~~------~~~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (211)
+|+|+.++ .+++....|...+..... .+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777666654332 37999999999999654332222223344445677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAAT 166 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~ 166 (211)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 151
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-22 Score=135.55 Aligned_cols=155 Identities=21% Similarity=0.379 Sum_probs=125.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+.+|..++||||++..|..+.. ....+|+|.+. ..+++ +.+.+++||.+|++..+.+|++||....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 57999999999999999999986544 44455555555 33433 458999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~~ 159 (211)
+|..+.+.+++++..+..+..+.+ ...|++|++||.|+++ ....+++..+.+. ..+.++++||.+|.++.|.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999888888877666655554 6899999999999976 4567776665543 3456899999999999999
Q ss_pred HHHHHHHH
Q 028237 160 FIKTAATI 167 (211)
Q Consensus 160 ~~~l~~~~ 167 (211)
|.||...+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998754
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=5e-22 Score=160.93 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=118.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhhHHh---hcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSITRSY---YRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~ 78 (211)
...|+|+|.+|||||||+++|++........+.++.....-.+.+.+ ...+.+||+||... ...+...| ++.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 44899999999999999999998765444334434444444444432 46799999999642 22344444 456
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 79 AAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 79 ~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
++++|+|+|+++. +.++....|..++..+.. .++|++||+||+|+.+ ..+..+.+.+..+.+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence 8999999999864 567777778888876643 4799999999999843 234556677766788999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATIYKK 170 (211)
Q Consensus 154 ~~v~~~~~~l~~~~~~~ 170 (211)
.|+++++++|.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999998877654
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.7e-22 Score=144.00 Aligned_cols=146 Identities=24% Similarity=0.221 Sum_probs=106.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hhHHhhc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------ITRSYYR 77 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 77 (211)
++|+++|++|+|||||++++.+..... ...+..+..+....+.++ ..++.+|||||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999876432 223333444444444444 36789999999765432 2234577
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777665444332 247999999999998654332 344456789999999999999
Q ss_pred HHHHHHHHHH
Q 028237 158 EAFIKTAATI 167 (211)
Q Consensus 158 ~~~~~l~~~~ 167 (211)
+++.+|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=5e-22 Score=162.64 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=117.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh--------hHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987542 33444446666666677766 56789999998654432 2457
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
++.+|++++|||++++.+.+.. |+..+.. .+.|+++|+||+|+.+. +...+++..+.+++++||++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 8899999999999988776654 5554432 37899999999998542 12345666778899999998 69
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028237 156 VEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 156 v~~~~~~l~~~~~~~~~ 172 (211)
+.++|+.|.+.+.+...
T Consensus 348 I~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 348 IKALVDLLTQKINAFYS 364 (442)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887653
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.3e-22 Score=166.86 Aligned_cols=176 Identities=19% Similarity=0.154 Sum_probs=117.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYY 76 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
..+|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+.+ ..+.+|||||.+. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987653 23333334444444444554 5688999999762 334456678
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCC
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQN 155 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~ 155 (211)
+.+|++|+|+|+++..+... ..+...+.. .++|+++|+||+|+.... .+..+.+ ..++ ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence 99999999999998655432 233333332 379999999999985421 1111222 2333 357999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCC
Q 028237 156 VEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPS 196 (211)
Q Consensus 156 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (211)
++++|++|++.+.+.... ...+....+++-.|.|+..
T Consensus 187 i~eL~~~i~~~l~~~~~~----~~~~~~~~kI~iiG~~nvG 223 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRV----GSASGGPRRVALVGKPNVG 223 (472)
T ss_pred cHHHHHHHHhhccccccc----ccccccceEEEEECCCCCC
Confidence 999999999887542111 1112234666666666443
No 156
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=3.3e-22 Score=159.09 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=107.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhh-------H
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSIT-------R 73 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~ 73 (211)
....++|+++|.+|+|||||+|+|.+..+... ..+..+.......+..++ .++.+|||||... +..+. .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 34567999999999999999999998877532 222222333333344444 5789999999743 22222 1
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEec
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASA 150 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa 150 (211)
..+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+.+. ...++.+++...+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 346799999999997653 22232 344444332 5688899999998542 2445555555544 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~~ 169 (211)
++|.|++++|++|.+.+.+
T Consensus 199 ktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cCccCHHHHHHHHHHhCCC
Confidence 9999999999998876544
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.5e-22 Score=148.30 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=102.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC----CCCC---CCCCCceeEEEEEEEEEC------------CEEEEEEEEeCCCcch
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK----RFQP---VHDLTIGVEFGARMITID------------NKPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 67 (211)
++|+++|+.++|||||+++|+.. .+.. ...+..+.........+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 1111 111222333322223332 3367899999999876
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHH------
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAK------ 139 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------ 139 (211)
+........+.+|++++|+|+.+.........+. .. .. .+.|+++++||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444567789999999998744332222221 11 11 2679999999999864221 11222222111
Q ss_pred -HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 140 -EHGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 140 -~~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
..+++++++||++|.|+++++++|.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988764
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=4e-22 Score=146.44 Aligned_cols=156 Identities=22% Similarity=0.188 Sum_probs=110.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc--------------eeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMITIDNKPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
+|+|+|.+|+|||||++.|.+........... +.+.......+......+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999887665442211 1222222222222357899999999999988899
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH-----------
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKE----------- 140 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~----------- 140 (211)
.+++.+|++++|+|..++..... ..++..+.. .+.|+++++||+|+...... ....+++..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 99999999999999987654332 223333332 48999999999998652211 12333333333
Q ss_pred ---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 141 ---HGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 141 ---~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
...+++++||++|.|+.++|.+|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346799999999999999999998864
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=5.3e-22 Score=141.93 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=102.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----hhhhhhHHhhcCCcEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 83 (211)
+|+++|.+|+|||||+|+|.+.... ...+.+ +.+... .+||+||.. .+.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998865311 111111 222222 279999972 22222233478999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--cEEEEecCCCCCHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL--IFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|+++..++. ..|+..+ ..+.|+++++||+|+.+ ...+....+++..++ +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876542 2232222 23679999999999854 345667777777775 899999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028237 162 KTAATIYKKIQD 173 (211)
Q Consensus 162 ~l~~~~~~~~~~ 173 (211)
++.+.+.+....
T Consensus 141 ~l~~~~~~~~~~ 152 (158)
T PRK15467 141 YLASLTKQEEAG 152 (158)
T ss_pred HHHHhchhhhcc
Confidence 998887776554
No 160
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=3.9e-22 Score=136.05 Aligned_cols=115 Identities=33% Similarity=0.612 Sum_probs=89.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
||+|+|..|||||||+++|.+.... ..+....+.++......+......+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 23333445566566677777777899999999999988888889999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCC
Q 028237 86 YDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCD 122 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D 122 (211)
||++++.+++.+..++..+.... ..+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988766544443322 34699999999998
No 161
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=9.7e-22 Score=165.46 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=113.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
...+|+++|+.++|||||+++|.+..+.....+..+.+.....+.+.+. ..+.+|||||++.|..++..++..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4578999999999999999999998877666555555555555555432 278999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEecCCCCC
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG---------LIFMEASAKTAQN 155 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~g~~ 155 (211)
|+|+++....+.... +... ...+.|+++++||+|+.+. ..+.+.......+ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~-i~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHH-HHHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999987322111111 1222 2247899999999998542 3344444333322 4699999999999
Q ss_pred HHHHHHHHHH
Q 028237 156 VEEAFIKTAA 165 (211)
Q Consensus 156 v~~~~~~l~~ 165 (211)
+.++|++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999874
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=3.1e-22 Score=142.71 Aligned_cols=146 Identities=18% Similarity=0.099 Sum_probs=100.6
Q ss_pred EEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hhHHhhcCCc
Q 028237 10 IIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------ITRSYYRGAA 80 (211)
Q Consensus 10 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 80 (211)
+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||+..+.. ....+++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 12222223333333444444 6899999999877543 3345678899
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~ 159 (211)
++++|+|..+..+.... .+...+.. .+.|+++++||+|+.+.... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875543332 12222222 26999999999998653221 223334555 6899999999999999
Q ss_pred HHHHHHH
Q 028237 160 FIKTAAT 166 (211)
Q Consensus 160 ~~~l~~~ 166 (211)
|++|++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 163
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.4e-21 Score=160.27 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=115.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhh---HHhhcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSIT---RSYYRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~ 78 (211)
...|+|+|.+|||||||+++|++........+.++.....-.+.+.+ .++.+||+||... ...+. ..++++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46899999999999999999998766544444445555444555554 6899999999632 11222 234677
Q ss_pred CcEEEEEEECCCH----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028237 79 AAGALLVYDITRR----ETFNHLASWLEDARQHA-----------NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL 143 (211)
Q Consensus 79 ~d~~i~v~d~~~~----~~~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (211)
+|++|+|+|+++. +.+..+..+..++..+. ..++|++||+||+|+.+.... .+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 9999999999753 34455555555554443 137899999999998643221 2233334455678
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237 144 IFMEASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 144 ~~~~~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
+++++||+++.|+++++.+|.+.+....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999887654
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=7.9e-22 Score=163.68 Aligned_cols=162 Identities=20% Similarity=0.148 Sum_probs=113.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhhh-
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSIT- 72 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~- 72 (211)
..++|+|+|.+|+|||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988653 34444445555555566666 45679999995 2333332
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHH-HHHHcCCcEEEEe
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQ-FAKEHGLIFMEAS 149 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s 149 (211)
..+++.+|++|+|+|+++..+...+. ++..+.. .+.|+++|+||+|+.+.... ...++.. +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34678999999999999887766653 3333332 47899999999999642211 0111221 2222346899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 028237 150 AKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
|++|.|++++|..+.+.+.+...
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999987765543
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=8.6e-22 Score=162.02 Aligned_cols=148 Identities=24% Similarity=0.236 Sum_probs=111.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh--------hHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--------TRSYY 76 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 76 (211)
.++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||.+.+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987642 33444445566566666665 57899999998654332 23468
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
+.+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 89999999999998877665433332 3478999999999996432211 334567999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIYK 169 (211)
Q Consensus 157 ~~~~~~l~~~~~~ 169 (211)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.8e-21 Score=164.61 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=115.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCC------CceeEEEEEEEEE-----CCEEEEEEEEeCCCcch
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMITI-----DNKPIKLQIWDTAGQES 67 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~ 67 (211)
.-+|+|+|+.++|||||+++|+... +...+.. ..+.++....+.+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998742 1122211 2255555444333 45568999999999999
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---c
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL---I 144 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 144 (211)
|...+..+++.+|++|+|+|+++..+.+....|+..+. .+.|+++++||+|+.+.. ......++.+..++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998666555555543332 378999999999985422 12223455555565 3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 028237 145 FMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
++++||++|.|+.++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999988765
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=2.4e-21 Score=157.81 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--hhhhH------HhhcC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--RSITR------SYYRG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~ 78 (211)
++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+ ...+.+|||+|.... ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998776554444445555555566654 236789999997332 22222 34688
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~ 157 (211)
+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.+... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998877776665555554445799999999999854211 1111 1123455 5889999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
+++++|.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988554
No 168
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-22 Score=140.37 Aligned_cols=162 Identities=25% Similarity=0.343 Sum_probs=123.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhC-------CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDK-------RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 75 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 75 (211)
....+.|+|+|..++|||||+..+... -......++++.+.....+ ....+.+||..|++..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHH
Confidence 344578999999999999999886432 1123344455555543333 24688999999999999999999
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHH---HHH---cCCcEEEE
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQF---AKE---HGLIFMEA 148 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~ 148 (211)
|..+|++|+++|+++++.++.....++.+..+ .-.+.|+++.+||.|+.+. +..+++... ++. ...++.++
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999988877766555433 3379999999999999663 333443332 222 34679999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
||.+|+||.+...|++..+..+
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999988776
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=8.3e-22 Score=146.61 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=101.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCCceeEEEEEEEEEC---------------------------C----
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMITID---------------------------N---- 52 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 52 (211)
++|+++|+.|+|||||+..+.+... ..+.....+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 11111111111111111110 0
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--C
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S 130 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~ 130 (211)
...++.+||+||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++++||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1268999999999998888888888999999999998742111112222222222 13479999999998642111 1
Q ss_pred HHHHHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 131 TEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 131 ~~~~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.+.++.+.+.. +++++++||++|.|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23333444332 57799999999999999999987643
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=3.3e-21 Score=142.65 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=107.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhhhH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSITR 73 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~ 73 (211)
+..++|+|+|.+|+|||||+++|++..+.....++.+.+.....+.. ...+.+||+||. +.+..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999999987655555555555544433333 368999999994 34444555
Q ss_pred HhhcCC---cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCcEEEE
Q 028237 74 SYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEA 148 (211)
Q Consensus 74 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~ 148 (211)
.++... +++++|+|..++.+.... .+...+.. .+.|+++++||+|+.+..+. ..+.+..+......+++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 565544 578888998775443221 11222221 37899999999998543211 1222444444446789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~ 168 (211)
||+++.|++++++.|.+.+.
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999887653
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.9e-21 Score=154.38 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=116.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-------hhhhHHhhcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RSITRSYYRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 78 (211)
...|+|+|.+|||||||+|+|++........+.++.....-.+.+.+ ...+.++|+||...- .......++.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 44799999999999999999998766544444444444444454443 346899999996431 1112234788
Q ss_pred CcEEEEEEECC---CHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecC
Q 028237 79 AAGALLVYDIT---RRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAK 151 (211)
Q Consensus 79 ~d~~i~v~d~~---~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 151 (211)
+|++++|+|+. +.+.++....|+.++..+.. .++|+++|+||+|+.+.... .+.+..+.+..+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 45566777777777766543 47899999999998643222 334445555544 468999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~~~~ 170 (211)
++.|++++++.|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999887654
No 172
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=2e-21 Score=141.89 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=101.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----------hhhhhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 72 (211)
.+..++|+|+|.+|+|||||+|+|.+..+...+.++.+.+.....+..++ .+.+||+||.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46678999999999999999999998764444444555555444444443 68999999952 344444
Q ss_pred HHhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--CcE
Q 028237 73 RSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHG--LIF 145 (211)
Q Consensus 73 ~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~ 145 (211)
..|++. ++++++|+|..++.+.... .++..+.. .+.|+++++||+|+.+... ...++++......+ +++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 556553 5799999999875544433 22333322 3789999999999864321 12344555555544 479
Q ss_pred EEEecCCCCCHH
Q 028237 146 MEASAKTAQNVE 157 (211)
Q Consensus 146 ~~~sa~~g~~v~ 157 (211)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999873
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=4.5e-21 Score=137.66 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=104.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYR 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 77 (211)
..+|+++|.+|+|||||+++|.+.................. .........+.+||+||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998765433322212222122 2233335789999999965432 23445688
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNV 156 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v 156 (211)
.+|++++|+|+.++.+. ....+...+... +.|+++++||+|+........+....+....+ .+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987221 112222333322 68999999999986432222333344444443 67999999999999
Q ss_pred HHHHHHHHHH
Q 028237 157 EEAFIKTAAT 166 (211)
Q Consensus 157 ~~~~~~l~~~ 166 (211)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=4.2e-21 Score=158.16 Aligned_cols=160 Identities=22% Similarity=0.098 Sum_probs=109.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-----------h
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-----------T 72 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 72 (211)
..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||...+... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987543 22333333333334444444 47899999997543221 2
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-E----HGLIFME 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (211)
..+++.+|++|+|+|+.++.+..... ++..+.. .+.|+++++||+|+.+ .....++...... . .++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEE
Confidence 34688999999999999876655432 2233322 3789999999999862 1111222222222 1 2478999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
+||++|.|+.++|+++.+.+.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998776543
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=4.4e-21 Score=162.05 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.|+++|+.++|||||+++|++. .++.+..++++.+.....+.+++ ..+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46999999999999999999963 34445555666666666666655 78999999999999888888999999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC--CHHHHHHHHHHc----CCcEEEEecCCC
Q 028237 84 LVYDITR---RETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV--STEEGEQFAKEH----GLIFMEASAKTA 153 (211)
Q Consensus 84 ~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~g 153 (211)
+|+|+++ +++.+.+. .+.. .+.| ++|++||+|+.+.... ..+++..+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999997 44444432 2222 2677 9999999999653321 123455555544 478999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATIYKK 170 (211)
Q Consensus 154 ~~v~~~~~~l~~~~~~~ 170 (211)
.|+++++..|.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999987765543
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=6.1e-21 Score=138.03 Aligned_cols=155 Identities=22% Similarity=0.138 Sum_probs=103.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----------hh-hhH
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----------RS-ITR 73 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~~~ 73 (211)
.++|+++|.+|+|||||+++|++..... ...+..+.......+..++ ..+.+||+||.... .. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999876432 2223323333333344444 45789999996432 11 122
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHHHc----CCcEEEE
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-FAKEH----GLIFMEA 148 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~ 148 (211)
.++..+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+.+......+.... +.+.. +.+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356789999999999987664443 22222222 378999999999986543222333222 22332 3679999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~ 166 (211)
||+++.|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.1e-20 Score=155.81 Aligned_cols=173 Identities=21% Similarity=0.174 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHhhc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYYR 77 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 77 (211)
++|+|+|.+|+|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||+.. .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987653 23333344555555566665 7899999999876 2333456788
Q ss_pred CCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCC
Q 028237 78 GAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQ 154 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~ 154 (211)
.+|++|+|+|+.+..+.. .+..|+. . .+.|+++++||+|..+. ......+ ...++. ++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998754332 2233332 2 27899999999996431 1222233 345654 8999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCC
Q 028237 155 NVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSG 197 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (211)
|+.++|+.+.+..... .........++++-.|.|+..+
T Consensus 149 gv~~l~~~I~~~~~~~-----~~~~~~~~~~~v~ivG~~n~GK 186 (435)
T PRK00093 149 GIGDLLDAILEELPEE-----EEEDEEDEPIKIAIIGRPNVGK 186 (435)
T ss_pred CHHHHHHHHHhhCCcc-----ccccccccceEEEEECCCCCCH
Confidence 9999999998733211 1111133467787777775543
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=7.4e-21 Score=163.81 Aligned_cols=150 Identities=22% Similarity=0.255 Sum_probs=112.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
....|+|+|+.++|||||+++|....+.....+..+.+.....+.+.+ ..+.||||||++.|..++..++..+|++|+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 467899999999999999999998777665555444444444455544 689999999999999999999999999999
Q ss_pred EEECCCH---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-------HHHHcC--CcEEEEecCC
Q 028237 85 VYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-------FAKEHG--LIFMEASAKT 152 (211)
Q Consensus 85 v~d~~~~---~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~~ 152 (211)
|||+++. ++.+.+ . .....+.|++|++||+|+.+. +.+.+.. ++..++ ++++++||++
T Consensus 367 VVdAddGv~~qT~e~i----~---~a~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 367 VVAADDGVMPQTIEAI----N---HAKAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEECCCCCCHhHHHHH----H---HHHhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999873 333321 2 222247999999999998642 2222221 223333 6799999999
Q ss_pred CCCHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAAT 166 (211)
Q Consensus 153 g~~v~~~~~~l~~~ 166 (211)
|.|++++|++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998764
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=5.4e-21 Score=163.35 Aligned_cols=156 Identities=20% Similarity=0.201 Sum_probs=112.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE--EEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....|+|+|+.++|||||+++|....+.....+..+.+.. ...+...+....+.||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4579999999999999999999988776554443333322 22333344568999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHH-------HHHcC--CcEEEEecCCC
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF-------AKEHG--LIFMEASAKTA 153 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa~~g 153 (211)
|+|+|+++....+.... +..+ ...+.|++|++||+|+.+. ..+.+... ...++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999987422221111 1222 2247899999999998652 22222222 22233 68999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATI 167 (211)
Q Consensus 154 ~~v~~~~~~l~~~~ 167 (211)
.|++++|++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999988764
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.8e-21 Score=156.91 Aligned_cols=173 Identities=20% Similarity=0.154 Sum_probs=116.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCc--------chhhhhhHHhhcC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--------ESFRSITRSYYRG 78 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 78 (211)
+|+|+|.+|+|||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876432 2333334444445555555 57999999996 3344556677899
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~ 157 (211)
+|++++|+|..+..+... ..+...+.. .++|+++|+||+|+.+.... ... ....++ +++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987543322 122233332 27899999999998653321 122 234566 69999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCC
Q 028237 158 EAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGP 195 (211)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (211)
++++.+.+.+.+.. .........++++-.|.|+.
T Consensus 150 ~ll~~i~~~l~~~~----~~~~~~~~~~~v~ivG~~~~ 183 (429)
T TIGR03594 150 DLLDAILELLPEEE----EEEEEEDGPIKIAIIGRPNV 183 (429)
T ss_pred HHHHHHHHhcCccc----ccccccCCceEEEEECCCCC
Confidence 99999887764321 11122233456666665544
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.4e-20 Score=147.55 Aligned_cols=158 Identities=20% Similarity=0.158 Sum_probs=106.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYR 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 77 (211)
.-.|+|+|.+|||||||+|+|++...........++......+... ...++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4569999999999999999999887654333332333322223222 23789999999964322 23344678
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNV 156 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v 156 (211)
.+|++++|+|+++..+. ........+. ..+.|+++|+||+|+.............+.+..+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 89999999999883221 1122222232 2368999999999986322222334445554444 56999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIY 168 (211)
Q Consensus 157 ~~~~~~l~~~~~ 168 (211)
++++++|.+.+.
T Consensus 160 ~~L~~~L~~~l~ 171 (292)
T PRK00089 160 DELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHhCC
Confidence 999999988764
No 182
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=3.3e-21 Score=131.50 Aligned_cols=164 Identities=24% Similarity=0.486 Sum_probs=142.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||.++|.+..|||||+-.+.++.+.+.+..+.|.++-.+++.+++.+..+.|||.+|++++..+......++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 47899999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----CC-CCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH----RR-AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~----~~-~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
+||++.+.++..+..|+++-+......+| |+|++|.|.-- +. .....+.+.+++-.+++++.+|+....|+..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 99999999999999999987666554455 56799999621 11 11234467788888999999999999999999
Q ss_pred HHHHHHHHHH
Q 028237 160 FIKTAATIYK 169 (211)
Q Consensus 160 ~~~l~~~~~~ 169 (211)
|..+..++..
T Consensus 178 FK~vlAklFn 187 (205)
T KOG1673|consen 178 FKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHhC
Confidence 9998887764
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=2.1e-20 Score=158.24 Aligned_cols=162 Identities=22% Similarity=0.249 Sum_probs=115.5
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCC--CC-----CC------CCCceeEEEEEEEEE-----CCEEEEEEEEeC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP-----VH------DLTIGVEFGARMITI-----DNKPIKLQIWDT 62 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~ 62 (211)
|..+..-+|+|+|+.++|||||+.+|+...- .. .. ....+.++....+.+ ++..+.+++|||
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT 81 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT 81 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence 3455667999999999999999999986321 11 00 112244444333332 455789999999
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG 142 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (211)
||+..|...+..+++.+|++|+|+|+++....+....|.... ..+.|+++++||+|+.+.. .......+.+..+
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg 155 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIG 155 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhC
Confidence 999999999999999999999999998865544444443322 2378999999999985422 1222334444455
Q ss_pred Cc---EEEEecCCCCCHHHHHHHHHHHHH
Q 028237 143 LI---FMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 143 ~~---~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
++ ++++||++|.|+.+++++|.+.+.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 54 899999999999999999987653
No 184
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=9.5e-24 Score=148.05 Aligned_cols=170 Identities=35% Similarity=0.622 Sum_probs=148.2
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE-EEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
+.+..++++|+|..|+|||+++.++....++..+..+++.++...+...+++ .+++++||..|+++|..+...|++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 3567889999999999999999999999999999999999998888888654 478899999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCc-EEEEecCCCC
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEHGLI-FMEASAKTAQ 154 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~sa~~g~ 154 (211)
+.++|||+++..+++....|.+.+..... ...|++++.||+|....... ...+...+.+++|+. .+++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999998854432 46788999999998543222 246678889999875 9999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIYKKI 171 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~~ 171 (211)
++.|+.+.|++++.-.-
T Consensus 181 ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVND 197 (229)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999999988764
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=2.1e-20 Score=158.13 Aligned_cols=146 Identities=19% Similarity=0.197 Sum_probs=110.2
Q ss_pred cCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh------hHHhh--cCCcEEEE
Q 028237 13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL 84 (211)
Q Consensus 13 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 84 (211)
|.+|+|||||+|+|++..+.....+..+.+.....+.+++ .++++||+||+.++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999887666666666666555666655 56899999998876542 34443 37899999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|+|.++.+.. ..+..++. +.+.|+++++||+|+.++.... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874421 12222222 2479999999999986544443 356788888899999999999999999999998
Q ss_pred HHH
Q 028237 165 ATI 167 (211)
Q Consensus 165 ~~~ 167 (211)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 186
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.3e-21 Score=135.76 Aligned_cols=162 Identities=29% Similarity=0.541 Sum_probs=144.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++++++|..|.||||++++++.+.|...+.++.+.........-+....++..|||.|++.+..+...|+-...+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999999999999999988877666557999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
.||++..-++.++..|...+.+... ++|+++++||.|..+.. .......+.+..++.+++.||+.+-|....|.|+.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 9999999999999999999877665 79999999999986543 23444566677789999999999999999999999
Q ss_pred HHHHH
Q 028237 165 ATIYK 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+++..
T Consensus 166 rKl~G 170 (216)
T KOG0096|consen 166 RKLTG 170 (216)
T ss_pred hhhcC
Confidence 97754
No 187
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=126.89 Aligned_cols=156 Identities=21% Similarity=0.316 Sum_probs=118.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|..++|||||+..|...... ...++ ..+..+.+.+.+ ++++++||.+|+...+..|..||.++|.+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT--~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPT--NGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hcccc--CCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 45799999999999999999999865432 23333 344445555555 789999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQ-----FAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~g~~v~ 157 (211)
+|+|.+|...++++...+-++.. ..-...|+.+..||.|+.-. ...+++.. ..+..-+.+.++||+.++|+.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 99999999888888776655543 33368999999999998542 22222211 112223568899999999999
Q ss_pred HHHHHHHH
Q 028237 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~l~~ 165 (211)
...+|+..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 99998765
No 188
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=6e-20 Score=139.09 Aligned_cols=161 Identities=20% Similarity=0.131 Sum_probs=115.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYY 76 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 76 (211)
..--|+|+|.||+|||||+|++.+......+...+++......+...+ +.++.++||||...-. ......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 445799999999999999999999999887777777777777776665 7899999999953222 1233447
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQN 155 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~ 155 (211)
..+|+++||+|++++....+ ...++.+.. .+.|+++++||+|..............+..... ..++++||++|.|
T Consensus 84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 88999999999998543211 222333333 368999999999986543322333333333333 3599999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKK 170 (211)
Q Consensus 156 v~~~~~~l~~~~~~~ 170 (211)
++.+.+.+...+.+.
T Consensus 160 ~~~L~~~i~~~Lpeg 174 (298)
T COG1159 160 VDTLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999998887765543
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.6e-20 Score=132.50 Aligned_cols=151 Identities=20% Similarity=0.137 Sum_probs=104.3
Q ss_pred EEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhcCCcEE
Q 028237 11 IIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRGAAGA 82 (211)
Q Consensus 11 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~ 82 (211)
|+|+.|+|||||++++.+.... .......+............ ...+.+||+||..... .....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987555 33333333333333333322 5689999999976553 3445578999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE---EGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
++|+|..+........ +..... ..+.|+++++||+|+......... .........+++++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877655544 222222 248999999999998653322111 112233334678999999999999999
Q ss_pred HHHHHHH
Q 028237 160 FIKTAAT 166 (211)
Q Consensus 160 ~~~l~~~ 166 (211)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999875
No 190
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=1.3e-20 Score=138.66 Aligned_cols=159 Identities=23% Similarity=0.211 Sum_probs=107.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..++|+++|+.++|||||+++|+........ ....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3679999999999999999999865422111 1111222222223212456899999999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHH-HHHHHc---
Q 028237 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGE-QFAKEH--- 141 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 141 (211)
.|.......++.+|++|+|+|+.+..... ....+..+... +.|++|++||+|+...+. ...+++. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99888888899999999999998653322 22333333333 789999999999862110 0112222 333333
Q ss_pred ---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 142 ---GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 142 ---~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.++++++||.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999999988764
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=6.6e-20 Score=158.79 Aligned_cols=154 Identities=21% Similarity=0.151 Sum_probs=104.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 75 (211)
...+|+|+|.+|+|||||+|+|++..... ...+ |.+..............+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p--GvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTP--GVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCC--CeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34689999999999999999999876432 2233 3333333333222246789999999653 23445567
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~ 154 (211)
++.+|++|+|+|..+...... ..|...+.. .+.|+++|+||+|+.+.. .....+.. .+. ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence 899999999999976322111 233444433 389999999999985421 12222222 233 36789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIYK 169 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~ 169 (211)
|+.++|++|++.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988744
No 192
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.3e-21 Score=130.65 Aligned_cols=160 Identities=22% Similarity=0.323 Sum_probs=119.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|..|+||||++.++.-... ....|+++.+. .++..+.+++.+||..|+-.....|+.||.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 4678999999999999999888765544 33344445554 333346799999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHH-HHHhcCCCCcEEEEEecCCCCCCCCCCHHHH-----HHHHHHcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEG-----EQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~-l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
+|+|..|.+..-.....+-. +.+..-.+..++|++||.|.... ....++ ..-.++.-+.++++||.+|+|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999998876665554333 33322246778999999998542 222222 22233334679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
+.++||.+.+.++
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.4e-19 Score=156.58 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=114.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh----------hhHHh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS----------ITRSY 75 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 75 (211)
.++|+++|.+|||||||+|+|++........+ |.+...+...+...+.++.+||+||..++.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 37899999999999999999998876544443 5555555555555668899999999876532 12334
Q ss_pred h--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 76 Y--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 76 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
+ ..+|++++|+|.++.+... .+..++.+ .+.|+++++||+|+.+.+.. ..+.+++.+..+++++++|+.+|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 3 4789999999998855422 23333333 37999999999998654433 45567888889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATI 167 (211)
Q Consensus 154 ~~v~~~~~~l~~~~ 167 (211)
.|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887654
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=144.63 Aligned_cols=176 Identities=20% Similarity=0.135 Sum_probs=119.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--h-------hhHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--S-------ITRSYY 76 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-------~~~~~~ 76 (211)
..|+|+|.||+|||||+|+|++.+.... ..+.++.+.......+.+ ..|.++||+|.+... . .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999999887643 334444444444455554 669999999976332 1 233457
Q ss_pred cCCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCC
Q 028237 77 RGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTA 153 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g 153 (211)
..+|++|||+|....-+ -+.+..++ . . .++|+++|+||+|-.. .+....-.-.+|. ..+.+||.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~--~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKIL---R-R--SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-h--cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence 88999999999876332 22233332 2 1 2799999999999642 2222222334454 4899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCC
Q 028237 154 QNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGG 198 (211)
Q Consensus 154 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (211)
.|+.++++.+++.+. .+...+...+...++++-.|.|.-.++
T Consensus 151 ~Gi~dLld~v~~~l~---~~e~~~~~~~~~~ikiaiiGrPNvGKS 192 (444)
T COG1160 151 RGIGDLLDAVLELLP---PDEEEEEEEETDPIKIAIIGRPNVGKS 192 (444)
T ss_pred cCHHHHHHHHHhhcC---CcccccccccCCceEEEEEeCCCCCch
Confidence 999999999888764 111112222256789999998865544
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=2.1e-19 Score=151.22 Aligned_cols=157 Identities=21% Similarity=0.182 Sum_probs=105.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC----------------CEEEEEEEEeCCCcchhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID----------------NKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~ 69 (211)
..-|+++|++++|||||+++|.+..+........+.+.....+..+ .....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999887654433322221111111111 011238899999999999
Q ss_pred hhhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC------------CHHHH
Q 028237 70 SITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV------------STEEG 134 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~ 134 (211)
.++..+++.+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+.+.... ....+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 44444332 2221 37899999999998531100 00000
Q ss_pred ------------HHHHH------------Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 135 ------------EQFAK------------EH--GLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 135 ------------~~~~~------------~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
..+.+ .+ .++++++||++|+|+++++.+|......
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 01111 11 3579999999999999999988765554
No 196
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.4e-19 Score=149.43 Aligned_cols=158 Identities=23% Similarity=0.137 Sum_probs=106.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------hh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----------IT 72 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~ 72 (211)
..++|+|+|.+|+|||||+|+|++... .....+..+.+.....+...+ ..+.+|||||...... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 468999999999999999999997653 233333333333333333443 6688999999643211 12
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH-HHHH----HcCCcEEE
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE-QFAK----EHGLIFME 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~ 147 (211)
..+++.+|++|+|+|+.++.+..... +...+.. .++|+++++||+|+.+... ..+.. .+.. ...+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 24678999999999999876655432 2233322 3789999999999863211 12221 1111 22478999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
+||++|.|+.++|+.+.+.+.+.
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988876554
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=4.4e-20 Score=151.65 Aligned_cols=159 Identities=19% Similarity=0.123 Sum_probs=106.9
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-----------------------------CCCCceeEEEEEEEEEC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITID 51 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 51 (211)
|+....++|+++|++++|||||+++|+...-... .....|++.......+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 6778899999999999999999999984321110 01122444444455555
Q ss_pred CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhH-HHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--
Q 028237 52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-- 128 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-- 128 (211)
...+++.+|||||++.|.......+..+|++|+|+|++++... .....++..+... ...|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHH
Confidence 5668999999999988876556667899999999999873111 1111222222222 1246899999999864221
Q ss_pred --CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 028237 129 --VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 129 --~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~ 161 (211)
...+++..+.+..+ ++++++||++|.|+.+++.
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11244555665555 4699999999999998653
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=122.60 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=119.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------CCCCC----CceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PVHDL----TIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
.-+..||+|.|+.++||||+++.+...... ..... |+..++. ...+.+ +..+.+++||||++|..
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHHH
Confidence 445789999999999999999999876641 11111 2222222 222222 46889999999999999
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEE
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEA 148 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~ 148 (211)
+|..+.+.+.++|+++|.+++..+ +....+..+.... ..|++|..||.|+.+ ....++++++.+.. .+++++.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999998887 4444444443332 299999999999965 46677777777665 7899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~ 166 (211)
+|.+++++.+.+..+..+
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999887764
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=1.2e-18 Score=132.04 Aligned_cols=151 Identities=23% Similarity=0.199 Sum_probs=103.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhcCCc
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRGAA 80 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 80 (211)
+|+|+|++|+|||||+++|++........+..+.+.....+.+.+ ..+++||+||..... .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998765433333334444444455554 689999999974322 22345789999
Q ss_pred EEEEEEECCCHh-hHHHHHHHHH-----------------------------------------HHHHhc----------
Q 028237 81 GALLVYDITRRE-TFNHLASWLE-----------------------------------------DARQHA---------- 108 (211)
Q Consensus 81 ~~i~v~d~~~~~-~~~~~~~~~~-----------------------------------------~l~~~~---------- 108 (211)
++++|+|++++. ..+.+...+. .+..+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 2322222221 111110
Q ss_pred -----------C---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 109 -----------N---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 109 -----------~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
. .-.|+++|+||+|+. ..++...++.. .+++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 236899999999984 34455555443 4689999999999999999988754
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=7.3e-19 Score=152.34 Aligned_cols=159 Identities=23% Similarity=0.183 Sum_probs=110.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhh-h
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSI-T 72 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 72 (211)
..++|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999988643 23334335555455556665 3567999999531 2222 2
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-E----HGLIFME 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (211)
..+++.+|++++|+|+++..+...... +..+.. .++|+++|+||+|+.+... .+..+.... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 344789999999999998777665543 333322 3789999999999964221 222222222 1 1346899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
+||++|.|+.++|+.+.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998877643
No 201
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=2.3e-19 Score=133.42 Aligned_cols=117 Identities=17% Similarity=0.329 Sum_probs=88.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCC-cEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY 86 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 86 (211)
+|+++|++|||||||+++|....+......+ ............+....+.+||+||+..+...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776554332 2222221121123457899999999999999899999998 9999999
Q ss_pred ECCCH-hhHHHHHHHHHHHHHh---cCCCCcEEEEEecCCCCC
Q 028237 87 DITRR-ETFNHLASWLEDARQH---ANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 87 d~~~~-~~~~~~~~~~~~l~~~---~~~~~p~ivv~nK~D~~~ 125 (211)
|..+. .++..+..++..+... ...+.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6677766665444322 225899999999999854
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2.2e-19 Score=151.64 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=111.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC--CCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
+|+|+|+.++|||||+++|+.. .+.... ....++++......+.+.++++.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221111 11235566655555555678999999999999999999
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHH-------HcCCcE
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAK-------EHGLIF 145 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~ 145 (211)
.+++.+|++++|+|+.+.. ......++..+.. .+.|+++++||+|+.+.+.. ..+++..+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998632 2333445554443 37899999999998653211 1233333332 235789
Q ss_pred EEEecCCCC----------CHHHHHHHHHHHH
Q 028237 146 MEASAKTAQ----------NVEEAFIKTAATI 167 (211)
Q Consensus 146 ~~~sa~~g~----------~v~~~~~~l~~~~ 167 (211)
+.+||++|. |+..+|+.+++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999995 7888887766644
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=4.4e-19 Score=127.62 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=100.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhhhHHhhc
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRSYYR 77 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 77 (211)
.|+++|.+|+|||||++.+.+........++.+.+.....+..+. .+.+||+||... +......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997666555555555555544444443 889999999533 3444444544
Q ss_pred ---CCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHH--HcCCcEEEE
Q 028237 78 ---GAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAK--EHGLIFMEA 148 (211)
Q Consensus 78 ---~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 148 (211)
+.+++++++|..+..+ ...+..|+.. . +.|+++++||+|+...... .........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4568899999886532 2222333322 2 6899999999998542211 1122222222 234579999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~ 166 (211)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=2e-19 Score=147.81 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=104.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhC--CCCC---------------------------CCCCCceeEEEEEEEEECCEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDK--RFQP---------------------------VHDLTIGVEFGARMITIDNKP 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+.+|+.. .... ......+.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45789999999999999999999852 1110 000112344444444455556
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC----
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRA---- 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---- 128 (211)
+.+.+||+||++.|......++..+|++|+|+|+++.++... ...++... ... ...|++|++||+|+.+...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHHH
Confidence 899999999999887766667889999999999998743211 11111112 222 1357999999999964221
Q ss_pred CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 028237 129 VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 129 ~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~ 161 (211)
....++..+++..+ ++++++||++|.|+.+++.
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11345566676665 5699999999999987553
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=1.4e-18 Score=146.75 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=114.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC--CCCCC------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..-+|+|+|+.++|||||+++|+.. .+... ...+.+.++......+....+++++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4579999999999999999999873 23221 123456777777777777789999999999999999
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcC
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAK-------EHG 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~ 142 (211)
.+..+++.+|++|+|+|+.+....+ ...++..+.. .+.|.++++||+|..+.+. ...+++..+.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998743222 2222333222 3789999999999865322 11233333332 235
Q ss_pred CcEEEEecCCCC----------CHHHHHHHHHHHHHHHHhcCc
Q 028237 143 LIFMEASAKTAQ----------NVEEAFIKTAATIYKKIQDGV 175 (211)
Q Consensus 143 ~~~~~~sa~~g~----------~v~~~~~~l~~~~~~~~~~~~ 175 (211)
+|++.+||.+|. ++..+++. +.+..+.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~----Ii~~iP~P~ 198 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQA----IVDHVPAPD 198 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHH----HHHhCCCCC
Confidence 789999999998 45666654 444455443
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=2.3e-19 Score=133.98 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=96.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------------------------CCCceeEEEEEEEEECCEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVEFGARMITIDNKPIKLQ 58 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 58 (211)
||+|+|++|+|||||+++|+...-.... ....+.+.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999754321110 00013333333344444457889
Q ss_pred EEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC----CHHHH
Q 028237 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV----STEEG 134 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~ 134 (211)
+|||||+..|......+++.+|++|+|+|+++...... ......+... ...++++++||+|+.+.... ...++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999999887667777899999999999987532221 1222222222 12357788999998643211 12334
Q ss_pred HHHHHHcCC---cEEEEecCCCCCHHHH
Q 028237 135 EQFAKEHGL---IFMEASAKTAQNVEEA 159 (211)
Q Consensus 135 ~~~~~~~~~---~~~~~sa~~g~~v~~~ 159 (211)
..+....+. +++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 455555553 4899999999998753
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=2.8e-18 Score=145.66 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
-|+++|+.++|||||+++|++. .+..+....++++.....+...+ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4899999999999999999963 33444444444444333333322 3468999999999998777788999999999
Q ss_pred EEECCC---HhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC--CHHHHHHHHHHcC---CcEEEEecCCCCC
Q 028237 85 VYDITR---RETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV--STEEGEQFAKEHG---LIFMEASAKTAQN 155 (211)
Q Consensus 85 v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~g~~ 155 (211)
|+|+++ +++.+.+ ..+... +.| ++|++||+|+.+.... ..+++..+....+ ++++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 3333332 222222 456 5799999998643211 1234455555444 6799999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATI 167 (211)
Q Consensus 156 v~~~~~~l~~~~ 167 (211)
++++++.|.+..
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999987644
No 208
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=1.4e-18 Score=131.93 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=82.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCC--------C--------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV--------H--------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|+.|+|||||+++|+...-... . ....+.+.......+....+++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999976421100 0 111233344444444555689999999999999988
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+..+++.+|++|+|+|..+.... ....++..+... +.|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 99999999999999999875432 334445544433 789999999999863
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=9.3e-19 Score=142.75 Aligned_cols=162 Identities=20% Similarity=0.164 Sum_probs=104.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCCceeEEEEEE--------------EEE----CC------EEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARM--------------ITI----DN------KPIK 56 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 56 (211)
+..++|+++|+.++|||||++.|.+..... +.....+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997542211 11111111111000 001 11 1468
Q ss_pred EEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHH
Q 028237 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEG 134 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 134 (211)
+.+||+||++.|...+...+..+|++|+|+|+++..........+..+... ...|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 999999999999888888888999999999998643111122222222222 13578999999998653211 12334
Q ss_pred HHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 135 EQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 135 ~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
..+.... +++++++||++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444432 57899999999999999999988754
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=5.4e-18 Score=143.19 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=103.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC------CEE-----E-----EEEEEeCCCcchh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID------NKP-----I-----KLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~~ 68 (211)
....|+++|++++|||||+++|.+...........+.+......... +.. + .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 45679999999999999999998765443333222212111111110 111 1 2689999999999
Q ss_pred hhhhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CC----------HH-
Q 028237 69 RSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VS----------TE- 132 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~----------~~- 132 (211)
..++..++..+|++|+|+|+++ +++++.+.. +.. .+.|+++++||+|+..... .. ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9999999999999999999987 555544332 222 3789999999999842100 00 00
Q ss_pred ----------HHHHHHHHc---------------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 133 ----------EGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 133 ----------~~~~~~~~~---------------~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
++....... .++++++||.+|.|+.+++..+.....+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 011111111 2569999999999999999988765543
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.3e-18 Score=141.97 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=103.2
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCC---CCCCCCceeEEEEEEEEE------------------C--C----EEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMITI------------------D--N----KPI 55 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~~~ 55 (211)
+...++|+++|+.++|||||+.+|.+.-.+ .+.....+.........+ + + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456789999999999999999999653211 111121222211111000 0 0 136
Q ss_pred EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHH
Q 028237 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEE 133 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 133 (211)
.+.+||+||++.|..........+|++++|+|+.++.........+..+... ...|+++++||+|+.+.... ..++
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 8999999999988766666677789999999999643111111112222222 12468999999998653221 1233
Q ss_pred HHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 134 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 134 ~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
+..+.+.. +++++++||++|.|++++++.|.+.+
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 44444432 47899999999999999999987755
No 212
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=2.8e-18 Score=136.85 Aligned_cols=163 Identities=24% Similarity=0.170 Sum_probs=114.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------hhH
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----------ITR 73 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 73 (211)
..++|+|+|.|++|||||+|+|++.......... |++.......++....++.++||+|...-.. -..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4699999999999999999999987665443333 5555555555554457888999999542211 233
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEA 148 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 148 (211)
..+..+|.+++|+|+..+-+.++..- ...+. +.+.++++++||+|+.+.+....++.+.-... ..++++.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRI-AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHH-HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 45778999999999998776444221 12222 24899999999999877544444444332222 24679999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 149 SAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
||.+|.++.++|+.+.+.+.....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHhcc
Confidence 999999999999998877665543
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.6e-18 Score=137.44 Aligned_cols=154 Identities=23% Similarity=0.220 Sum_probs=112.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhh--------HHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--------RSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 75 (211)
..++++++|.||+|||||+|.|++.... .+..+.++.+.-...+.++| +.+.+.||+|.++..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3689999999999999999999987665 44555556666666667776 788899999987654432 234
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
++.+|.+++|+|.+.+.+-..... +. ....++|+++|.||.|+...... ..+....+.+++.+|+++|.|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCccC
Confidence 788999999999998632222111 11 23358999999999999664321 111112234689999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKK 170 (211)
Q Consensus 156 v~~~~~~l~~~~~~~ 170 (211)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988887776
No 214
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=7e-18 Score=124.38 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=100.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
.++|+++|+.++|||||+++|++..... ......+.+.......+.....++.+.||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4799999999999999999998641100 00112245555555556666678999999999988877
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEH-----G 142 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 142 (211)
....+..+|++++|+|+...-.. .....+..+... +.| +|+++||+|+....+. ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 77888999999999999864321 122233333332 666 7789999998532211 123345555444 3
Q ss_pred CcEEEEecCCCCCHH
Q 028237 143 LIFMEASAKTAQNVE 157 (211)
Q Consensus 143 ~~~~~~sa~~g~~v~ 157 (211)
++++++||.+|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999999863
No 215
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=3.9e-18 Score=129.67 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=120.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhHHh---hcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITRSY---YRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~ 78 (211)
+..|+++|.||+|||||++.+..........+.++.....-++.+++ ...+.+-|.||.-+- +.+...| ++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence 34689999999999999999999888777777667777666666665 234899999995322 2233334 567
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCC
Q 028237 79 AAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKT 152 (211)
Q Consensus 79 ~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~ 152 (211)
++.++||+|++.. ..++.++.++.++..+.. .+.|.++|+||+|+++. ....+.++.+...-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence 8899999999988 778888888888766654 68999999999998632 223346667666555 99999999
Q ss_pred CCCHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAAT 166 (211)
Q Consensus 153 g~~v~~~~~~l~~~ 166 (211)
++++.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999988764
No 216
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=9.5e-18 Score=120.76 Aligned_cols=158 Identities=17% Similarity=0.206 Sum_probs=112.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhhH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSITR 73 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 73 (211)
+....|+++|.+|+|||||||.|++...-.....++|.|.....+.+++. +.+.|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 34578999999999999999999997755556666688887777888774 77999999 345666777
Q ss_pred HhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCc--
Q 028237 74 SYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HGLI-- 144 (211)
Q Consensus 74 ~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~-- 144 (211)
.|++. ..++++++|+..+-...+. ++++.+.. .+.|++|++||+|.....+.. ......++. ....
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccce
Confidence 77654 3488899998765443221 23333333 389999999999986644332 112222222 2233
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 145 FMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
++.+|+..+.|++++...|.+.+..
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999988876643
No 217
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=4.3e-18 Score=117.35 Aligned_cols=135 Identities=23% Similarity=0.294 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----cchhhhhhHHhhcCCcEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----QESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i 83 (211)
||+|+|+.|||||||+++|.+... .+..|+.+.+ .+ .++|||| ...+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------~~------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------YD------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------cc------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999997644 3444433333 11 2579999 3444544555677999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~ 162 (211)
+|.|++++.+.-- ..+ ... -++|+|=|+||+|+.. +..+.+..+++.+..|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-P~f----a~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGF----ASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-chh----hcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998653110 011 111 2689999999999973 234677788888888985 899999999999999998
Q ss_pred HH
Q 028237 163 TA 164 (211)
Q Consensus 163 l~ 164 (211)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=2.8e-18 Score=129.11 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=95.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCC-----------------------------CCCCCCceeEEEEEEEEECCEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQ-----------------------------PVHDLTIGVEFGARMITIDNKPIKLQ 58 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (211)
+|+++|+.++|||||+.+|+...-. .......+++.......+....+++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999998642110 00011123444444444544568999
Q ss_pred EEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh------HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC--CCC
Q 028237 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--AVS 130 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~ 130 (211)
+||+||+..|...+...++.+|++|+|+|+.+... .......+...... ...|+++++||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998887777777889999999999987421 11112222222221 136899999999986321 111
Q ss_pred ----HHHHHHHHHHcC-----CcEEEEecCCCCCHH
Q 028237 131 ----TEEGEQFAKEHG-----LIFMEASAKTAQNVE 157 (211)
Q Consensus 131 ----~~~~~~~~~~~~-----~~~~~~sa~~g~~v~ 157 (211)
.+++..+....+ ++++++||++|.|+.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122333344443 569999999999987
No 219
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=129.58 Aligned_cols=169 Identities=20% Similarity=0.140 Sum_probs=126.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 75 (211)
....|.++|..|+|||||+|.|++........-+.+.+...+.+.+.+ ...+.+.||.|.- .|.+ +..-
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 457899999999999999999998777665555556777777777775 5688899999943 2222 3333
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
...+|++++|+|+++|...+.+......+........|+|++.||+|+..... .........-..+.+||++|.|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcC
Confidence 56799999999999998888887777777776556799999999999754322 1222222211588899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCC
Q 028237 156 VEEAFIKTAATIYKKIQDGVFDVSN 180 (211)
Q Consensus 156 v~~~~~~l~~~~~~~~~~~~~~~~~ 180 (211)
++.+...|.+.+.............
T Consensus 344 l~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 344 LDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred HHHHHHHHHHHhhhcccceEEEcCc
Confidence 9999999999888776555444433
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=7.6e-18 Score=126.30 Aligned_cols=113 Identities=24% Similarity=0.306 Sum_probs=80.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------------CCCceeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------DLTIGVEFGARMITI-----DNKPIKLQIWDTAGQ 65 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 65 (211)
+|+|+|+.++|||||+++|+........ ....+.+.....+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433220 011122322222222 345689999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
..|......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888899999999999999987654432 233333322 368999999999974
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.7e-17 Score=136.87 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=117.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------hhhhHHhh--cC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------RSITRSYY--RG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~ 78 (211)
.+|+++|.||+|||||+|+|++.+.....++.++.+...-.....+ .++++.|+||.... ....++|+ ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 5699999999999999999999999999888666665555555554 56889999995433 23445554 35
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~ 158 (211)
+|++|-|+|+++-+.--.+...+.+ -+.|+++++|++|..++.-+ .-+.+++.+..|+|+++++|++|.|+++
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 7999999999987642222222222 28999999999998554333 3446778888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 159 AFIKTAATIYKKI 171 (211)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (211)
+.+.+.+...++.
T Consensus 155 l~~~i~~~~~~~~ 167 (653)
T COG0370 155 LKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHhccccc
Confidence 9998887555444
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.2e-17 Score=134.40 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=100.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC------C--------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF------Q--------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|++... . .......+++.....+.++....++.+|||||++.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 4578999999999999999999974310 0 0011113445555556666666789999999999987
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVS---TEEGEQFAKEHG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 142 (211)
.........+|++++|+|+.+....+ ....+..+... +.|.+ +++||+|+.+..+.. .++++.+....+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 76666778899999999998732211 12222223222 67765 689999986532211 234566666654
Q ss_pred --CcEEEEecCCCC-CHHHHH
Q 028237 143 --LIFMEASAKTAQ-NVEEAF 160 (211)
Q Consensus 143 --~~~~~~sa~~g~-~v~~~~ 160 (211)
++++++||.+|. +..++.
T Consensus 166 ~~~~ii~vSa~~g~~g~~~~~ 186 (394)
T TIGR00485 166 DDTPIIRGSALKALEGDAEWE 186 (394)
T ss_pred cCccEEECccccccccCCchh
Confidence 689999999885 333343
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.2e-17 Score=133.30 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=98.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|++..... ......+.+.......+......+.++|+||++.|..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 46899999999999999999998631100 0111235555555556655567889999999998877
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC----
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEHG---- 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 142 (211)
.....+..+|++++|+|+.+..... ....+..+... ++| +|+++||+|+.+..+.. .+++..+....+
T Consensus 91 ~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 166 (394)
T PRK12736 91 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD 166 (394)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence 6777788999999999998632211 12222333322 678 67889999986432211 234555555554
Q ss_pred -CcEEEEecCCCC
Q 028237 143 -LIFMEASAKTAQ 154 (211)
Q Consensus 143 -~~~~~~sa~~g~ 154 (211)
++++++||++|.
T Consensus 167 ~~~ii~vSa~~g~ 179 (394)
T PRK12736 167 DIPVIRGSALKAL 179 (394)
T ss_pred CccEEEeeccccc
Confidence 579999999983
No 224
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.2e-17 Score=131.71 Aligned_cols=156 Identities=22% Similarity=0.220 Sum_probs=121.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
..+=|.+||+...|||||+..+-............+....-..+..+. ....+.|+|||||+.|..++.+...-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999999888877777666666666666542 2457889999999999999999999999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEecC
Q 028237 84 LVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG---------LIFMEASAK 151 (211)
Q Consensus 84 ~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~ 151 (211)
+|++++| |++.+. +......+.|++|.+||+|.++ .+...+..-.++++ ..++++||+
T Consensus 84 LVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 84 LVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred EEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 9999998 444333 3333334999999999999874 34444444444444 349999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~~~~ 170 (211)
+|+|+++|+..+.-+..-.
T Consensus 154 tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 154 TGEGIDELLELILLLAEVL 172 (509)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999876655544
No 225
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-17 Score=123.81 Aligned_cols=162 Identities=20% Similarity=0.180 Sum_probs=112.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch------h------hhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES------F------RSI 71 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~~~ 71 (211)
.+.++|+|+|.||+|||||.|.+.+.+.........+++...--+...+ ..++.++||||.-. + ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4678999999999999999999999999988888877777665555554 67999999999321 1 112
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC-------------CCC---HHHHH
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR-------------AVS---TEEGE 135 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------------~~~---~~~~~ 135 (211)
......++|.++.|+|+++....-. ...+..+..+. +.|-++++||+|..-.. +.+ .+-.+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3455778999999999996332111 12334445554 78999999999964321 111 11111
Q ss_pred HHHH---------HcCCc----EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 136 QFAK---------EHGLI----FMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 136 ~~~~---------~~~~~----~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
+|.. ..+++ +|.+||++|+|+.++-++|..+...
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 2221 11232 8999999999999999998875543
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=6.6e-17 Score=124.69 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=81.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC---------C-----------CceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---------L-----------TIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
-+|+|+|++|+|||||+++|+...-..... . ..+.++......++...+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 379999999999999999997532111000 0 11344444555566667999999999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
.|......+++.+|++|+|+|+++.... ....++..... .+.|+++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 9888778889999999999999874322 22333333322 3789999999999854
No 227
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=6.2e-17 Score=124.54 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=120.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhHHh---hcCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITRSY---YRGA 79 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 79 (211)
--|+++|.|++|||||++.++..+......+.++.....-++.+ .....|.+-|.||.-+- ..+-..| ++++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 35789999999999999999998887776666677766666666 33457899999995322 2244444 4567
Q ss_pred cEEEEEEECCCHh---hHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEE-EEecCCC
Q 028237 80 AGALLVYDITRRE---TFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM-EASAKTA 153 (211)
Q Consensus 80 d~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~g 153 (211)
.++++|+|++..+ ..++...+..++..+.. .++|.+|++||+|+....+........+.+..++... .+||.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 7999999998644 46667777788877765 6899999999999754333323333444444555422 2999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 028237 154 QNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 154 ~~v~~~~~~l~~~~~~~~~ 172 (211)
.|++++...+.+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999999998888763
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=9.1e-17 Score=130.73 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=97.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC-------CCC-------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK-------RFQ-------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|++. .+. .......+.+.......+.....++.++||||++.|..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 4689999999999999999999862 100 01111235555555555655567889999999998877
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCC---CHHHHHHHHHHcC----
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAV---STEEGEQFAKEHG---- 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 142 (211)
.....+..+|++++|+|+.+....+ ....+..+.. .++|.+ +++||+|+.+..+. ...++..+....+
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~ 166 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD 166 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence 6677788999999999998632211 2222333322 367866 57999998642211 1224555565543
Q ss_pred -CcEEEEecCCCCC
Q 028237 143 -LIFMEASAKTAQN 155 (211)
Q Consensus 143 -~~~~~~sa~~g~~ 155 (211)
++++++||.+|.+
T Consensus 167 ~~~ii~~Sa~~g~n 180 (396)
T PRK12735 167 DTPIIRGSALKALE 180 (396)
T ss_pred ceeEEecchhcccc
Confidence 6799999999853
No 229
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=1.2e-17 Score=125.25 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=103.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhh-----hhHHhhcCCcE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRS-----ITRSYYRGAAG 81 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 81 (211)
||++||+.+|||||..+.+..+..+.... ..+.+.......+. ...+.+.+||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999888777665443332 22333333333331 2357999999999876544 35778999999
Q ss_pred EEEEEECCCHhhHHHHHHHHH---HHHHhcCCCCcEEEEEecCCCCCCC--CC----CHHHHHHHHHHcC---CcEEEEe
Q 028237 82 ALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLAHRR--AV----STEEGEQFAKEHG---LIFMEAS 149 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~---~l~~~~~~~~p~ivv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~s 149 (211)
+|||+|+...+..+.+..+.. .+.++ .++..+.|+++|+|+...+ .. ..+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999995444444444433 33333 3689999999999985421 11 1222333444445 6799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhc
Q 028237 150 AKTAQNVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~~~~~~~ 173 (211)
..+ ..+.++|..+++.++...+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHH
Confidence 999 58999999999988876554
No 230
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=1.9e-16 Score=117.33 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=95.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCcee---EEEEEEEEECCEEEEEEEEeCCCcchhhhhhH-----Hhhc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMITIDNKPIKLQIWDTAGQESFRSITR-----SYYR 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~ 77 (211)
+++|+|+|.+|+|||||+|.|++.........+.+. +.....+... ....+.+||+||......... ..+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986554322222221 1111111111 124689999999754322222 2366
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-----------CCHHHHHHHH----HHcC
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-----------VSTEEGEQFA----KEHG 142 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~----~~~~ 142 (211)
.+|++++|.+- +.. ..-..++..+... +.|+++|+||+|+..... ...+++++.+ ...+
T Consensus 80 ~~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78888887542 111 1123445555443 689999999999832111 1112222222 2222
Q ss_pred ---CcEEEEecC--CCCCHHHHHHHHHHHHHHHH
Q 028237 143 ---LIFMEASAK--TAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 143 ---~~~~~~sa~--~g~~v~~~~~~l~~~~~~~~ 171 (211)
.++|.+|+. .+.++..+.+.|+..+.+..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 259999998 56899999999888877653
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=2e-16 Score=119.08 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=97.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC-----------------------ceeEEEEEE-------------EEEC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----------------------IGVEFGARM-------------ITID 51 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 51 (211)
||+++|+.++|||||+++|....+....... .+.+..... -.++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999876553321100 011100000 0112
Q ss_pred CEEEEEEEEeCCCcchhhhhhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237 52 NKPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.....+.+.|+||++.|.......+. .+|++++|+|+..... .....++..+.. .++|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 22467899999999988765555553 6899999999876433 122233333333 37899999999998543211
Q ss_pred --CHHHHHHHHHH--------------------------cCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 130 --STEEGEQFAKE--------------------------HGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 130 --~~~~~~~~~~~--------------------------~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
...++..+... ..+|++.+|+.+|.|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11222222221 1247999999999999999988754
No 232
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=4e-16 Score=127.47 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=100.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
...++|+++|++++|||||+++|++..... ......+++.......+.....++.+.||||+..|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 457899999999999999999998742110 011113455554445555556788999999999887
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 142 (211)
......+..+|++++|+|+.....-+ ....+..+.. .+.| +|+++||+|+.+..+. ..+++..+.+..+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77777788999999999998643211 2222333322 2678 7789999998653221 1234555555543
Q ss_pred --CcEEEEecCCCCCH
Q 028237 143 --LIFMEASAKTAQNV 156 (211)
Q Consensus 143 --~~~~~~sa~~g~~v 156 (211)
++++++||.+|.++
T Consensus 166 ~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 166 DDIPIVSGSALLALEA 181 (409)
T ss_pred CcceEEEcchhhcccc
Confidence 67999999999754
No 233
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=5.1e-16 Score=119.03 Aligned_cols=160 Identities=20% Similarity=0.180 Sum_probs=111.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-----hhhh----hhHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-----SFRS----ITRSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~----~~~~~ 75 (211)
....|+|.|+||+|||||++.+++......+.|.++ .....-+++....+++++||||.- +-.. .....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT--K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT--KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc--cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 356899999999999999999998877766666534 434444455445789999999931 1111 11122
Q ss_pred hcCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCC
Q 028237 76 YRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKT 152 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~ 152 (211)
-+-.++++|+||++... +.+....++.++.... +.|+++|+||+|..+. ...++.+......+.. ...+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE--EKLEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch--hHHHHHHHHHHhhccccccceeeee
Confidence 23457999999998743 5666677788887776 4899999999998643 2344444445444443 67788888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~~ 170 (211)
+.+++.+-..+.....+.
T Consensus 321 ~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 321 GCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhhHHHHHHHHHHHhhch
Confidence 888888777776654443
No 234
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=1e-16 Score=123.72 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=79.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCC----------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|++++|||||+++|+...-.. ......+++.......+....+++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421100 00111233444333444444589999999999989888
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+..+++.+|++|+|+|..+...... ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9999999999999999977432221 233333332 3789999999999864
No 235
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.71 E-value=5.1e-17 Score=132.28 Aligned_cols=162 Identities=25% Similarity=0.326 Sum_probs=121.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|..|+||||||-.|....|.+...+-...-.-...++-+ .+...|+|++...........-++.+|++.+|
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 5899999999999999999999998877655542222212223223 35578999987777666677889999999999
Q ss_pred EECCCHhhHHHHHH-HHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHH-HHHHHHHc-CCc-EEEEecCCCCCHHHH
Q 028237 86 YDITRRETFNHLAS-WLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEE-GEQFAKEH-GLI-FMEASAKTAQNVEEA 159 (211)
Q Consensus 86 ~d~~~~~~~~~~~~-~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~~-~~~~sa~~g~~v~~~ 159 (211)
|+++++++++.+.. |+..+++... .+.|+|+|+||+|..+......+. ...+.... .+. .+++||++-.++.++
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSEL 166 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhh
Confidence 99999999999885 6666655442 689999999999997665553333 33333333 243 899999999999999
Q ss_pred HHHHHHHHHH
Q 028237 160 FIKTAATIYK 169 (211)
Q Consensus 160 ~~~l~~~~~~ 169 (211)
|.+-.+.++.
T Consensus 167 fYyaqKaVih 176 (625)
T KOG1707|consen 167 FYYAQKAVIH 176 (625)
T ss_pred hhhhhheeec
Confidence 9987665543
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=5.1e-16 Score=129.80 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=82.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
..-+|+|+|+.++|||||+++|+...-... .....+.++......+....+++++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999974211000 001113444444455555568999999999
Q ss_pred cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+..|......+++.+|++|+|+|+.+.... ....++..... .+.|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 999988788889999999999999874322 22333333322 3899999999999743
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=3.4e-16 Score=129.72 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=98.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------------C-------------------CCceeEEEEEEEEECC
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------D-------------------LTIGVEFGARMITIDN 52 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~ 52 (211)
...++|+++|+.++|||||+.+|+...-.... . ..-+++.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45689999999999999999999754221110 0 0012333333334444
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 132 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
...++.+|||||++.|.......+..+|++++|+|+........ ...+..+.... ..|++|++||+|+.+.+....+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence 56789999999999887666666899999999999976422111 11111122221 2478999999998643221122
Q ss_pred ----HHHHHHHHc----CCcEEEEecCCCCCHHHHH
Q 028237 133 ----EGEQFAKEH----GLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 133 ----~~~~~~~~~----~~~~~~~sa~~g~~v~~~~ 160 (211)
++..+.... .++++++||++|.|+.++-
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222333333 3679999999999998753
No 238
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=7e-16 Score=124.95 Aligned_cols=158 Identities=19% Similarity=0.146 Sum_probs=121.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
.+.=|.|||+...|||||+..|-...........++..+.--.+... ....++|.|||||..|..|+.+...-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 35668999999999999999999988877777766666666667666 34789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEecCCCCC
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG---------LIFMEASAKTAQN 155 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~g~~ 155 (211)
|+.++|.- +.+..+.+......+.|++|.+||+|.++ .+.+.+.+-...+| +.++++||++|.|
T Consensus 231 VVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99998832 11223334444445999999999999865 34555444333333 3599999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKK 170 (211)
Q Consensus 156 v~~~~~~l~~~~~~~ 170 (211)
++.|-+.+.-+..-+
T Consensus 304 l~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 304 LDLLEEAILLLAEVM 318 (683)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999998776554444
No 239
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=4.5e-16 Score=120.65 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=93.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh----
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS---- 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 70 (211)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+++.+|||||...+..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876543 233444555555566677788999999999432211
Q ss_pred ---h-------------------hHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 71 ---I-------------------TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 71 ---~-------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
+ +...+. .+|+++++++.+...-...-..++..+ .. ++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l---~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL---SK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH---hc-cCCEEEEEECCCcCCH
Confidence 0 001222 467788888776422111112223333 22 6899999999998552
Q ss_pred C--CCCHHHHHHHHHHcCCcEEEEecCC
Q 028237 127 R--AVSTEEGEQFAKEHGLIFMEASAKT 152 (211)
Q Consensus 127 ~--~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (211)
. ......+.+.+..++++++......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 2 2334556777888899988766543
No 240
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=3.2e-16 Score=117.48 Aligned_cols=113 Identities=20% Similarity=0.198 Sum_probs=78.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCC----------------CCCCceeEEEEEEEEEC--------CEEEEEEEEeCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMITID--------NKPIKLQIWDTA 63 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 63 (211)
+|+|+|+.++|||||+.+|+...-... .....++........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999976432110 01111111112222333 347899999999
Q ss_pred CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
|+..|......+++.+|++++|+|+.+....+. ...+.... ..+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcc
Confidence 999999999999999999999999987654433 22222222 2368999999999975
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=9.5e-16 Score=126.70 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=99.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCC------CCC--------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------FQP--------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|++.. ... ......+.+.......++....++.++|+||++.|-.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~ 159 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 159 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence 46899999999999999999998521 111 1122234444444444544567889999999999987
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEH----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+..... ...++..+... ++| +++++||+|+.+..+. ..+++..+....
T Consensus 160 ~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~ 235 (478)
T PLN03126 160 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGD 235 (478)
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 7778888999999999988643222 22333333332 677 7789999998652211 122445555543
Q ss_pred CCcEEEEecCCCCCH
Q 028237 142 GLIFMEASAKTAQNV 156 (211)
Q Consensus 142 ~~~~~~~sa~~g~~v 156 (211)
+++++++|+.+|.++
T Consensus 236 ~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 236 DIPIISGSALLALEA 250 (478)
T ss_pred cceEEEEEccccccc
Confidence 467999999988543
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=4e-16 Score=127.28 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCC-------------------------------CCCceeEEEEEEEEECCEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMITIDNKPI 55 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (211)
++|+++|+.++|||||+.+|+...-.... +..-+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999643211000 00112333333344444557
Q ss_pred EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC----H
Q 028237 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS----T 131 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~----~ 131 (211)
++.++||||++.|.......+..+|++|+|+|+......+. ...+..+.... ..++++++||+|+.+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 89999999999987666678899999999999976432211 11122222221 34688999999986432211 1
Q ss_pred HHHHHHHHHcC---CcEEEEecCCCCCHHHH
Q 028237 132 EEGEQFAKEHG---LIFMEASAKTAQNVEEA 159 (211)
Q Consensus 132 ~~~~~~~~~~~---~~~~~~sa~~g~~v~~~ 159 (211)
++...+.+..+ ++++++||.+|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22333444444 46999999999999863
No 243
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.9e-16 Score=109.58 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=114.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.=|++++|..|+|||||++.|...+..... || .........+.+ .++.-+|.+|+......|+.|+..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 348999999999999999999877654322 21 122233344554 7889999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHH------HHHc--------C---CcEEE
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQF------AKEH--------G---LIFME 147 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~--------~---~~~~~ 147 (211)
+|+-|.+.+.+....++.+..... .+.|+++++||+|.+... .+++.+.. +... + +.++.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 999999998888877666644332 589999999999986643 34433221 1111 1 23778
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~ 166 (211)
+|...+.+--+.|.|+.+.
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 9999998888888887654
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=3.9e-16 Score=128.35 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=105.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCC-----------------------------CCCCCCceeEEEEEEEEECCEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------------------PVHDLTIGVEFGARMITIDNKP 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+.+|+...-. .......+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 34689999999999999999988642110 0011122555555556666677
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhH-------HHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLASWLEDARQHANANMT-IMLIGNKCDLAHR 126 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~ 126 (211)
+.+.++|+||++.|......++..+|++|+|+|+++. .+ ......+..+.. .++| ++|++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence 8999999999999999899999999999999999863 12 122222222222 2664 6888999997521
Q ss_pred C------CCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237 127 R------AVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (211)
Q Consensus 127 ~------~~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~ 158 (211)
. ....++++.+++..+ ++++++||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 112455667777666 5699999999999864
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=1.1e-15 Score=120.32 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=57.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE---------------------CC-EEEEEEEEeCCCc-
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---------------------DN-KPIKLQIWDTAGQ- 65 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 65 (211)
|+++|.+++|||||+|+|++........+..+.+...-...+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999988765433333332322222221 22 3478999999997
Q ss_pred ---chhhhhhHHh---hcCCcEEEEEEECC
Q 028237 66 ---ESFRSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 66 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
+.+..+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455555554 89999999999996
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.1e-15 Score=118.49 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=85.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----C-----------ceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+|+|++|+|||||+++|+.......... + .+.+.......+....+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999975322111000 0 011222222233334578999999999988888
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEE
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 146 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
+..+++.+|++++|+|+++....... ..+..+.. .+.|.++++||+|.... ...+....+....+.+++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~ 149 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVV 149 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeE
Confidence 88999999999999999875543322 22233322 37899999999998653 222334444444555433
No 247
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=4.7e-16 Score=127.68 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=103.8
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCCceeEEEEEEE---------------EECC-----------
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMI---------------TIDN----------- 52 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 52 (211)
..+..++|+++|+..+|||||+..|++... ..+.....+.+...... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346789999999999999999999986422 22222211111111100 0000
Q ss_pred -----EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 53 -----KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 53 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
....+.++|+||++.|-......+..+|++++|+|+.+..........+..+.... -.|++|++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence 02468999999999998777778889999999999986421111122222222221 24689999999986422
Q ss_pred CC--CHHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 128 AV--STEEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 128 ~~--~~~~~~~~~~~---~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.. ..+++..+... .+++++++||.+|.|+++|++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 11 12233333332 357899999999999998888877533
No 248
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=2.2e-15 Score=102.16 Aligned_cols=106 Identities=22% Similarity=0.177 Sum_probs=70.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh---------hhhhHHhhc
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------RSITRSYYR 77 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 77 (211)
+|+|+|.+|+|||||+|.|++... .....+..+.......+.+.+ ..+.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998543 233333334444344455666 45579999995321 111223348
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK 120 (211)
.+|++++|+|..++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887322 22334444442 48999999998
No 249
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=2.2e-15 Score=122.61 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=98.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|++.... .......+.+.......+.....++.+.||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 34789999999999999999999863110 0011123455555555565556788999999998887
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCC---CHHHHHHHHHHc----
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAV---STEEGEQFAKEH---- 141 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~---- 141 (211)
......+..+|++++|+|+.+.... ....++..+... +.|.+ +++||+|+.+..+. ...++..+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 7677778999999999999864321 222233333322 68876 58999998642211 112344444443
Q ss_pred -CCcEEEEecCCCCC
Q 028237 142 -GLIFMEASAKTAQN 155 (211)
Q Consensus 142 -~~~~~~~sa~~g~~ 155 (211)
+++++++||+++.+
T Consensus 166 ~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 166 DDTPIIRGSALKALE 180 (396)
T ss_pred cCCcEEEeecccccC
Confidence 36799999998753
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=1.5e-15 Score=124.98 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=101.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC--CC---------------------------CCCCCceeEEEEEEEEECCEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMITIDNKP 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+.+|+...- .. ......+.+.......++...
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4468999999999999999999875211 00 011122455555555566667
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEecCCCCC--
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLASWLEDARQHANANMT-IMLIGNKCDLAH-- 125 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~-- 125 (211)
+.+.|+|+||+..|.......+..+|++|+|+|+..... + ......+..+... ++| +||++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence 899999999999998888888999999999999986420 0 1122222222222 666 678999999532
Q ss_pred CCCCC----HHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237 126 RRAVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (211)
Q Consensus 126 ~~~~~----~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~ 158 (211)
..+.. .+++..+....+ ++++++|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 233444444333 5699999999999864
No 251
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=3.5e-15 Score=110.43 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=96.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhh---H
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SIT---R 73 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~---~ 73 (211)
++|+|+|.+|+|||||+|.+++........ +..+.........+. ...+.++||||..... .+. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543332 222333333333344 4689999999964331 111 1
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCC------CHHHHHHHHHHcCCcE
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAV------STEEGEQFAKEHGLIF 145 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 145 (211)
.....+|++|+|+++.+ .+... ...++.+..... .-.++++++|+.|....... .....+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22457899999999987 33222 223333333221 23578999999996543211 1244556666666555
Q ss_pred EEEec-----CCCCCHHHHHHHHHHHHHH
Q 028237 146 MEASA-----KTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 146 ~~~sa-----~~g~~v~~~~~~l~~~~~~ 169 (211)
+.++. ..+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 55554 3456677777776666554
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=1.9e-15 Score=131.10 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=83.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC--------CC-----C---CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------VH-----D---LTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------~~-----~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
+...+|+|+|+.++|||||+++|+...-.. .. . ...+.+.......+....+++++|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 456799999999999999999998532110 00 0 0012222222233333468999999999999
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
|...+..+++.+|++|+|+|.++.........| ..+.. .+.|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 999999999999999999999886655443333 33332 3789999999999854
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=4e-15 Score=122.37 Aligned_cols=147 Identities=15% Similarity=0.121 Sum_probs=93.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC------CCCC--------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK------RFQP--------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|.+. .... ......+++.......+.....++.++||||+..|-.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence 4689999999999999999999732 1000 0111134555555566666667899999999998876
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEH----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+....+ ....+..+.. .++| +++++||+|+.+..+.. ..++..+....
T Consensus 140 ~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~ 215 (447)
T PLN03127 140 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGD 215 (447)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6666677899999999997643211 2222233322 2788 57889999986422111 11223333332
Q ss_pred CCcEEEEecC---CCCC
Q 028237 142 GLIFMEASAK---TAQN 155 (211)
Q Consensus 142 ~~~~~~~sa~---~g~~ 155 (211)
.++++++|+. +|.|
T Consensus 216 ~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 216 EIPIIRGSALSALQGTN 232 (447)
T ss_pred cceEEEeccceeecCCC
Confidence 3578888775 4544
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=5.2e-15 Score=113.26 Aligned_cols=156 Identities=22% Similarity=0.148 Sum_probs=111.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYR 77 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~ 77 (211)
..-+|+++|+|++|||||++.|++........++++.+...-...+++ .++++.|+||.-.-. .......+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 456899999999999999999999887766666667777777777776 889999999843221 23445688
Q ss_pred CCcEEEEEEECCCHhh-HHHHHHHHH-----------------------------------------HHHHhc-------
Q 028237 78 GAAGALLVYDITRRET-FNHLASWLE-----------------------------------------DARQHA------- 108 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~-~~~~~~~~~-----------------------------------------~l~~~~------- 108 (211)
++|++|+|+|+....+ .+.+...+. .+..+.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999985443 333322221 011000
Q ss_pred -----------------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 109 -----------------NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 109 -----------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
..-+|.+++.||+|+.. .++...+.+.. +.+.+||..+.|++++.+.|.+.+--
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 01278999999999854 44455555444 78999999999999999988886643
No 255
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.65 E-value=3.9e-15 Score=127.90 Aligned_cols=151 Identities=20% Similarity=0.156 Sum_probs=96.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------------CC-------------------CceeEEEEEEEEECCE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMITIDNK 53 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~~ 53 (211)
..++|+++|++++|||||+++|+...-.... .. .-+.+.......+...
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4689999999999999999999864321110 00 0122222333344444
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-- 131 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 131 (211)
..++.++||||++.|.......+..+|++++|+|+......+. ...+..+.... ..|++|++||+|+.+......
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHHHHH
Confidence 5788999999999887666667889999999999976432111 11122222221 357889999999864222111
Q ss_pred --HHHHHHHHHcC---CcEEEEecCCCCCHHH
Q 028237 132 --EEGEQFAKEHG---LIFMEASAKTAQNVEE 158 (211)
Q Consensus 132 --~~~~~~~~~~~---~~~~~~sa~~g~~v~~ 158 (211)
.++..+....+ ++++++||++|.|+.+
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22333444544 4599999999999885
No 256
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.6e-15 Score=119.74 Aligned_cols=172 Identities=22% Similarity=0.194 Sum_probs=120.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-------------CCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCcch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------VHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~ 67 (211)
+..-++.|+-+...|||||..+|+...-.. ...+.-|++...++..+ .+..+.++++|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 445689999999999999999987532211 11122255555554333 35569999999999999
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHHcCCcEE
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAKEHGLIFM 146 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~ 146 (211)
|.....+.+..++++|+|+|+...-..+.+..++.-+. .+..+|.|+||+|++..+... ..++..+....+.+++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999998665555555444433 377899999999997643211 2223333333445699
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCc
Q 028237 147 EASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESY 183 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~ 183 (211)
.+||++|.|+.++++. ++++.+.+....+.+..
T Consensus 214 ~vSAK~G~~v~~lL~A----II~rVPpP~~~~d~plr 246 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEA----IIRRVPPPKGIRDAPLR 246 (650)
T ss_pred EEEeccCccHHHHHHH----HHhhCCCCCCCCCcchH
Confidence 9999999999996555 45566666655555443
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=3.2e-15 Score=112.20 Aligned_cols=162 Identities=18% Similarity=0.256 Sum_probs=107.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-------hhhhhHHhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYY 76 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 76 (211)
..+++|+++|..|+|||||||+|+.+...+...-..+.+........-+ ...+.|||+||..+ +..+...++
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4578999999999999999999997665554433334433333332222 26789999999554 677788889
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC-------CCCHHHHHHHHHHc--------
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR-------AVSTEEGEQFAKEH-------- 141 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~-------- 141 (211)
...|.++++.++.|+.---. ..+++.+.... .+.++++++|.+|....- ......++++.++.
T Consensus 116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998763222 22233332221 258999999999984431 11112222222211
Q ss_pred --CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 142 --GLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 142 --~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
=.|++.++...+-|+.++...+++.+-
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 146888888999999999998887665
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=1.7e-14 Score=125.02 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=81.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----CCC-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
+.+.+|+|+|+.++|||||+++|+...-.. ... ...+++.......+....+++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 457799999999999999999997531100 000 1113333333333333458899999999998
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+...+...++.+|++|+|+|+.+....+. ...+..+.. .++|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888899999999999999987543222 222333322 3789999999999864
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=1.5e-14 Score=125.36 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=82.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----CCC-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
+..-+|+|+|+.++|||||+++|+...-.. ... ...+++.......+....+++.+|||||+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 345699999999999999999997422110 000 0113333333334444458999999999998
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+...+..+++.+|++|+|+|+.+....+.. .++..+.. .+.|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888888999999999999999875443322 22333332 3789999999999865
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.61 E-value=1.8e-14 Score=120.60 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=83.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEeCC
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMITIDNKPIKLQIWDTA 63 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 63 (211)
....+|+|+|++++|||||+++|+...-... .....+.++......++...+++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3456999999999999999999864211000 00112445555555666667899999999
Q ss_pred CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
|+..|......++..+|++|+|+|..+... .....++..+.. .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 999888777778999999999999986321 122334433322 3789999999999854
No 261
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=5.1e-14 Score=114.02 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=59.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---------------------D-NKPIKLQIWDTAG 64 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 64 (211)
++|+|+|.+++|||||+|+|++........+..+.+.....+.+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988775443343343333322221 1 1236789999999
Q ss_pred c----chhhhhhHHh---hcCCcEEEEEEECC
Q 028237 65 Q----ESFRSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 65 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 2334455556 88999999999996
No 262
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=4.5e-14 Score=111.64 Aligned_cols=119 Identities=19% Similarity=0.254 Sum_probs=88.2
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLIGNKC 121 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~ 121 (211)
..+.+.+||++|+...+..|.+++.+++++|||+|+++. ..+.+....+..+..... .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 358899999999999999999999999999999999874 345554555555544433 689999999999
Q ss_pred CCCCC--------------C--CCCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237 122 DLAHR--------------R--AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 122 D~~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
|+-.+ . ..+.+.+..+... ..+....++|.+..++..+|..+.+.+.+..
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 96221 1 2334454444332 1234567999999999999999999888764
No 263
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.5e-14 Score=95.63 Aligned_cols=136 Identities=20% Similarity=0.200 Sum_probs=97.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----chhhhhhHHhhcCCcEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----ESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i 83 (211)
|++++|..|+|||||.+.|.+... .+..|+. +.+.+.. .+||||- ..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999987633 2333322 2222222 5699993 333333445577899999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~ 162 (211)
+|-.++++++.-- ..+... -.+|+|-|++|.|+.+ ....+..++|..+-|.. +|++|+.++.|+++++.+
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999999875211 011111 2567999999999975 34567788888888874 999999999999999999
Q ss_pred HHH
Q 028237 163 TAA 165 (211)
Q Consensus 163 l~~ 165 (211)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 875
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-14 Score=116.64 Aligned_cols=167 Identities=22% Similarity=0.231 Sum_probs=108.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-h--------hhHH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-S--------ITRS 74 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~--------~~~~ 74 (211)
+..++|+|+|+||+|||||+|.|............ |++.......++-..+++.+.||+|..+.. . ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 45689999999999999999999988765433332 444444444444444889999999976511 1 2234
Q ss_pred hhcCCcEEEEEEECCCHhh--HHHHHHHHHHHHHh------cCCCCcEEEEEecCCCCCC-CCCCHHHHHHHHHHcC---
Q 028237 75 YYRGAAGALLVYDITRRET--FNHLASWLEDARQH------ANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEHG--- 142 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~------~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~--- 142 (211)
-++.+|++++|+|+....+ ...+...+...... ...+.|++++.||.|+... .+..... ..+....+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcc
Confidence 4778999999999944332 22223333333221 1245899999999998654 2222211 11222222
Q ss_pred Cc-EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 143 LI-FMEASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 143 ~~-~~~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
.+ +.++|+++++|+.++...+...+.....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 22 6679999999999999998887776644
No 265
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.58 E-value=6e-14 Score=107.45 Aligned_cols=160 Identities=16% Similarity=0.302 Sum_probs=121.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE--CCEEEEEEEEeCCCcchhhhhhHHhhcCCc----
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DNKPIKLQIWDTAGQESFRSITRSYYRGAA---- 80 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d---- 80 (211)
-+|+|+|..++||||||.+|-+.. .+.+..+..|....+.- ++.-.++.+|-..|...+..+..+.+...+
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 479999999999999999998764 45555566666655544 334477899999999999988888876553
Q ss_pred EEEEEEECCCHhh-HHHHHHHHHHHHHhcC--------------------------------------------------
Q 028237 81 GALLVYDITRRET-FNHLASWLEDARQHAN-------------------------------------------------- 109 (211)
Q Consensus 81 ~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~-------------------------------------------------- 109 (211)
+||++.|+++|.+ ++.+..|...+.++.+
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 8999999999965 5556666654443322
Q ss_pred -----------CCCcEEEEEecCCCCC----C-------CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 110 -----------ANMTIMLIGNKCDLAH----R-------RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 110 -----------~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.++|++||.+|+|... + .......+++||..+|+.++.+|+++..|++-+..+|.+.+
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 0277999999999832 1 11223457889999999999999999999999999999877
Q ss_pred HH
Q 028237 168 YK 169 (211)
Q Consensus 168 ~~ 169 (211)
+.
T Consensus 290 yG 291 (473)
T KOG3905|consen 290 YG 291 (473)
T ss_pred cC
Confidence 54
No 266
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.56 E-value=2.2e-14 Score=103.34 Aligned_cols=115 Identities=22% Similarity=0.364 Sum_probs=71.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhh-hHH--hhcCCcEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSI-TRS--YYRGAAGA 82 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~-~~~--~~~~~d~~ 82 (211)
-.|+|+|+.|||||+|+.+|..+....+...- .... .+.+ ......+.++|+||+.+.+.. ... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998554333322 1111 1222 223457889999999987753 333 47889999
Q ss_pred EEEEECCC-HhhHHHHHHH-HHHHHHhc--CCCCcEEEEEecCCCCC
Q 028237 83 LLVYDITR-RETFNHLASW-LEDARQHA--NANMTIMLIGNKCDLAH 125 (211)
Q Consensus 83 i~v~d~~~-~~~~~~~~~~-~~~l~~~~--~~~~p~ivv~nK~D~~~ 125 (211)
|||+|... +.....+.++ +..+.... ....|++|+.||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 4445555554 44443222 36899999999999854
No 267
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.56 E-value=7.9e-14 Score=111.31 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=123.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
.-+|+|+-+...|||||+..|+.+.-.. .-...-|+++..+...+.+++++++|.|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999998753221 11223478888888888888899999999999999999
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHH-------cCC
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKE-------HGL 143 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~ 143 (211)
..+.+..+|++++++|+.+.. +.+....+.+....+.+.|||+||+|.+..+.. -.+++..+..+ .++
T Consensus 85 VERvl~MVDgvlLlVDA~EGp----MPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP----MPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC----CCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 999999999999999998733 222233444444558889999999998765422 13344444333 456
Q ss_pred cEEEEecCCCC------CHHHHHHHHHHHHHHHHhcCcccCCCCCc
Q 028237 144 IFMEASAKTAQ------NVEEAFIKTAATIYKKIQDGVFDVSNESY 183 (211)
Q Consensus 144 ~~~~~sa~~g~------~v~~~~~~l~~~~~~~~~~~~~~~~~~~~ 183 (211)
|++..|++.|. +-.+-+.-|.+.+++..+.+..+.+.+.+
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ 206 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQ 206 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeE
Confidence 88889988772 22333555566666677777755555443
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.8e-14 Score=110.50 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=105.9
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCC-----------------------------CCCCCCceeEEEEEEEEECCE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------------------PVHDLTIGVEFGARMITIDNK 53 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (211)
....++++++|+..+|||||+-+|+...-. ....+.-|.++......++-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 345789999999999999999998543110 011112366666666777666
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHH---HHH--HHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH---LAS--WLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~---~~~--~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
.+.+.|.|+||+..|-......+..+|+.|+|+|+.+.+.... -.+ ....+.+... -..+||++||+|..+-++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence 7889999999999998888888999999999999987631111 111 1122222222 356888999999977443
Q ss_pred CCHHH----HHHHHHHcC-----CcEEEEecCCCCCHHHH
Q 028237 129 VSTEE----GEQFAKEHG-----LIFMEASAKTAQNVEEA 159 (211)
Q Consensus 129 ~~~~~----~~~~~~~~~-----~~~~~~sa~~g~~v~~~ 159 (211)
...++ +..+.+..| ++++++|+..|.|+.+-
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 32222 334455544 45999999999998753
No 269
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.54 E-value=4.4e-13 Score=106.91 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=87.1
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEecCC
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 122 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D 122 (211)
.+.+.+||.+|+...+..|.+++.+++++|||+|+++. ..+......+..+..... .+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 47789999999999999999999999999999999873 244555555555544333 5899999999999
Q ss_pred CCCC--------------C-CCCHHHHHHHHHH-----c------CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 123 LAHR--------------R-AVSTEEGEQFAKE-----H------GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 123 ~~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
+..+ . ..+.+.+..+... . .+.+..++|.+..++..+|..+.+.+.+...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 7321 0 1234444443322 1 1346679999999999999999988887653
No 270
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=2.4e-13 Score=108.90 Aligned_cols=169 Identities=22% Similarity=0.206 Sum_probs=118.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC---------------CCCCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCc
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF---------------QPVHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 65 (211)
+..-++.|+-+-..|||||..+|+...- +.+..+.+++.-......+ ++..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3455889999999999999999865321 1222232233333333333 457899999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH-HHHHHHcCCc
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG-EQFAKEHGLI 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~ 144 (211)
-.|.....+.+..+.++++|+|++..-..+.+...+.-+.. +.-++-|+||+|++..+ .+.+ .++-.-.|++
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhCCC
Confidence 99988888888999999999999986666666666655543 66789999999997633 3333 3333445654
Q ss_pred ---EEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCc
Q 028237 145 ---FMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESY 183 (211)
Q Consensus 145 ---~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~ 183 (211)
.+.+||++|.|++++++.|++ +.|.+..+.+.+..
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~----~iP~P~g~~~~pLk 197 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVE----KIPPPKGDPDAPLK 197 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHh----hCCCCCCCCCCcce
Confidence 888999999999998776665 45555544444433
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.53 E-value=1.2e-12 Score=109.46 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=73.5
Q ss_pred EEEEEEeCCCcch-----hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237 55 IKLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.++.+.||||... ........+..+|+++||+|.....+..+ ......+.... .+.|+++|+||+|..+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 4578999999643 22234457999999999999987433222 12233333321 13599999999998644333
Q ss_pred CHHHHHHHHHH----cCC---cEEEEecCCCCCHHHHHHHHHH
Q 028237 130 STEEGEQFAKE----HGL---IFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 130 ~~~~~~~~~~~----~~~---~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
..+.+..+... ..+ .+|++||+.|.|++++++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 45555555432 222 4999999999999999998876
No 272
>PRK00007 elongation factor G; Reviewed
Probab=99.53 E-value=2.2e-13 Score=118.13 Aligned_cols=144 Identities=19% Similarity=0.129 Sum_probs=91.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----CCC-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
+.+.+|+|+|++++|||||+++|+...-.. ... ...+++.......+....+++.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 456799999999999999999997421100 000 1113333333333433458999999999998
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC----
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL---- 143 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---- 143 (211)
|.......++.+|++++|+|+...-..+. ...+..+.. .+.|.++++||+|+.+.. .....+++.+..+.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPVP 161 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCeee
Confidence 87777778899999999999876433332 222233333 378999999999986532 22333444444433
Q ss_pred cEEEEecCCC
Q 028237 144 IFMEASAKTA 153 (211)
Q Consensus 144 ~~~~~sa~~g 153 (211)
..+++|+.++
T Consensus 162 ~~ipisa~~~ 171 (693)
T PRK00007 162 IQLPIGAEDD 171 (693)
T ss_pred EEecCccCCc
Confidence 2445555544
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=5.3e-13 Score=115.70 Aligned_cols=110 Identities=21% Similarity=0.180 Sum_probs=75.2
Q ss_pred EcCCCCCHHHHHHHHhhCCCCCCC-----C-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh
Q 028237 12 IGDTGVGKSCLLLQFTDKRFQPVH-----D-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 75 (211)
Q Consensus 12 ~G~~~~GKStli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 75 (211)
+|+.++|||||+++|+...-.... . ...+.+.......+....+.+++|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653211000 0 001233333333333345899999999999888888889
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+..+|++++|+|+++........ .+..+.. .+.|+++++||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 99999999999998765444332 2233322 3789999999999853
No 274
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=110.52 Aligned_cols=170 Identities=13% Similarity=0.091 Sum_probs=118.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-----hh----hhHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-----RS----ITRSYY 76 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~----~~~~~~ 76 (211)
.-.++|+|.+++|||||+|.++.......+.++++..... -+++.+-..|+++||||.-.. .. ......
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhh--hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 4578999999999999999999777766666654444433 334445588999999994221 10 112223
Q ss_pred cCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCcEEEEecC
Q 028237 77 RGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE---GEQFAKEHGLIFMEASAK 151 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~sa~ 151 (211)
+--.+|+|++|++... +......++..+..... ++|.|+|+||+|....+....+. +..+...-+++++++|..
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~ 324 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV 324 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence 3445999999998744 45555667777765543 89999999999997655554432 344444556899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcccC
Q 028237 152 TAQNVEEAFIKTAATIYKKIQDGVFDV 178 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~~~~~~~~~~~~ 178 (211)
+.+||.++-...++.+....-......
T Consensus 325 ~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 325 QEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred chhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 999999998888877776655444333
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=5.6e-13 Score=99.79 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------h-hhH---
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------S-ITR--- 73 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~~~--- 73 (211)
++|+|+|..||||||++|.+++........ ..++..+......+++ ..+.++||||..... . +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987654432 2234444444455666 778899999943211 1 111
Q ss_pred HhhcCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-------HHHHHHHHHHcCCc
Q 028237 74 SYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-------TEEGEQFAKEHGLI 144 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 144 (211)
......|++++|+.+.. -+..+ +..++..+.... .-..++||+|..|........ ...+..+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12456889999999983 22222 222222222111 234688999998865433210 11244556666766
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHHH
Q 028237 145 FMEASAK------TAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 145 ~~~~sa~------~g~~v~~~~~~l~~~~~~~ 170 (211)
|..++.. ....+.+++..+-+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 7767666 2234666666655544443
No 276
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.49 E-value=5.4e-13 Score=103.31 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=109.8
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-------------------------------CCCCCceeEEEEEEEEE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------------------------VHDLTIGVEFGARMITI 50 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 50 (211)
+....+|++-+|...-||||||-+|+...... ..+..+|+++......+
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 44567999999999999999999986542100 11223577777666666
Q ss_pred CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHH--HHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS--WLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
.-...+|.+-|||||+.|.+.......-+|++|+++|+-..- ++..+. ++..+.. =+.++|.+||+|+.+..+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeecccccCH
Confidence 666789999999999999998888899999999999995321 222221 2222221 245788889999988654
Q ss_pred CCH----HHHHHHHHHcCCc---EEEEecCCCCCHHH
Q 028237 129 VST----EEGEQFAKEHGLI---FMEASAKTAQNVEE 158 (211)
Q Consensus 129 ~~~----~~~~~~~~~~~~~---~~~~sa~~g~~v~~ 158 (211)
... ++...|+.+.++. ++++||..|+||..
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 433 4456688888764 99999999998863
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.49 E-value=1.7e-12 Score=115.13 Aligned_cols=145 Identities=27% Similarity=0.272 Sum_probs=99.8
Q ss_pred CHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEE----------------EEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP----------------IKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 18 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+||||+..+.+..........++.......+..+... -.+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999988877666665655555555443210 128999999999999888888999999
Q ss_pred EEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC----------------HHHHH----H--
Q 028237 82 ALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS----------------TEEGE----Q-- 136 (211)
Q Consensus 82 ~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~-- 136 (211)
+++|+|+++ +++.+.+. .+.. .+.|+++++||+|+....... ..++. .
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 44444332 2222 268999999999985321100 01110 0
Q ss_pred --HHH------------Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 137 --FAK------------EH--GLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 137 --~~~------------~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
+.+ .+ .++++++||++|.|+++++..|......
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 111 11 3579999999999999999887655443
No 278
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=1.2e-12 Score=101.49 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-------hHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-------TRSYY 76 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~ 76 (211)
..++|+|+|.+|+||||++|+|++...... .....+.+......... ..++.+|||||....... ...++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 468999999999999999999998765322 22222222222223333 478999999997644221 22222
Q ss_pred --cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCC
Q 028237 77 --RGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH 125 (211)
Q Consensus 77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~ 125 (211)
...|+++||..++.....+.-...+..+.... ..-.+.||++|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 25889999976653211111112233332221 12357899999999754
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.48 E-value=2.4e-13 Score=118.24 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=81.0
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCC---------------CCCC---CCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR---------------FQPV---HDLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
.+...+|+|+|+.++|||||+++|+... +... ...+.........+.+++..+++.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3456799999999999999999997531 1000 011212222222234567789999999999
Q ss_pred cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+..|......+++.+|++|+|+|+.+....+.. ..+..+. ..+.|.++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH---HcCCCEEEEEEChhccc
Confidence 999988888899999999999999764322221 1122222 23678899999999853
No 280
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=1.2e-12 Score=99.94 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=72.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEeCCCcchhh---h-------hh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAGQESFR---S-------IT 72 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~-------~~ 72 (211)
+..++|+|+|.+|+|||||+|.|++......... ..+..........++ ..+.+|||||..... . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4578999999999999999999999765433222 223333332333333 678999999965441 0 12
Q ss_pred HHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCC
Q 028237 73 RSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (211)
Q Consensus 73 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~ 125 (211)
..++. ..|++++|..++.......-..+++.+..... .-.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 22333 56788888766643211111123333332211 1257999999999743
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.48 E-value=1.3e-13 Score=105.22 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=77.4
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+++..+.+.+++++|.+++|||+.++. ++..+..|+..+.. .+.|+++|+||+|+.+......+..+.+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 667778888999999999999999887 78889898876543 4799999999999965443333344444 457889
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 028237 145 FMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~~~~l~~ 165 (211)
++++||++|.|++++|..+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988753
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=2.1e-12 Score=103.79 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=61.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF 68 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 68 (211)
...++|+|+|.||+|||||+|.|++........+.++.......+.+.+. +.++.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34679999999999999999999988776665566565555555555432 235899999995421
Q ss_pred ----hhhhHH---hhcCCcEEEEEEECC
Q 028237 69 ----RSITRS---YYRGAAGALLVYDIT 89 (211)
Q Consensus 69 ----~~~~~~---~~~~~d~~i~v~d~~ 89 (211)
..+... .++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 122223 367899999999973
No 283
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.3e-12 Score=94.50 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=100.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc---CCcEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR---GAAGAL 83 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 83 (211)
-.|+++|+.+||||+|+-+|..+....... ++......+.+.. -.++++|.||+.+.+.-...++. ++-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 469999999999999999999874433222 3344444444443 23789999999998876777766 788999
Q ss_pred EEEECCC-HhhHHHHHH-HHHHHHHh--cCCCCcEEEEEecCCCCCCCC------CCHHHH-------------------
Q 028237 84 LVYDITR-RETFNHLAS-WLEDARQH--ANANMTIMLIGNKCDLAHRRA------VSTEEG------------------- 134 (211)
Q Consensus 84 ~v~d~~~-~~~~~~~~~-~~~~l~~~--~~~~~p~ivv~nK~D~~~~~~------~~~~~~------------------- 134 (211)
||+|..- .....++.+ ++..+... ...+.|+++.-||.|+.-... ..+.++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999753 223344444 34444333 246889999999999833110 000111
Q ss_pred ---------H--HHHHH--cCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 135 ---------E--QFAKE--HGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 135 ---------~--~~~~~--~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
+ +|..- ..+.+.+.|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1 11111 1244788999988 899999998875
No 284
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.1e-13 Score=102.77 Aligned_cols=172 Identities=18% Similarity=0.156 Sum_probs=112.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEEEE------------------EC------CEEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMIT------------------ID------NKPIK 56 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~------------------~~------~~~~~ 56 (211)
+..++|+++|+...|||||.+.|.+- +++++..+.+++...+.... +. .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45789999999999999999999763 22222222222222111110 01 11367
Q ss_pred EEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHH
Q 028237 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEG 134 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~ 134 (211)
+.|.|.||++-.-+.......-.|++++|++++.+..-....+.+.-+.-.. -+.++++-||+|+..++. .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8899999999777666666667799999999998443323333232232222 356889999999966432 356777
Q ss_pred HHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCC
Q 028237 135 EQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181 (211)
Q Consensus 135 ~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (211)
.+|.+-. ++|++++||..+.|++-+++.|.+. .+.+..+.+.+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~----IptP~rd~~~~ 211 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKY----IPTPERDLDKP 211 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHh----CCCCccCCCCC
Confidence 7787653 6789999999999999888776654 44454444443
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=5.5e-12 Score=93.33 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=64.2
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 134 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (211)
....+.++.|......... .-+|.+|.|+|+.+.+.... .....+ ...-++++||+|+.+......+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 3455677777322222211 12578999999987655321 111111 222389999999975323345554
Q ss_pred HHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 135 EQFAKE--HGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 135 ~~~~~~--~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.+..+. .+.+++++|+++|.|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 555544 457899999999999999999998654
No 286
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=6.9e-12 Score=98.57 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=90.1
Q ss_pred EEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh----------HHHHHHHHHHHHHhcC-CCCcEEE
Q 028237 48 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET----------FNHLASWLEDARQHAN-ANMTIML 116 (211)
Q Consensus 48 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~l~~~~~-~~~p~iv 116 (211)
+.+.-+...+.+.|.+|+.....-|.+.+.+++++|||+++++.+. +.+...++..+..+.+ .+.++|+
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 3333344889999999999999999999999999999999886332 2223334555555554 6899999
Q ss_pred EEecCCCCCC--------------C-CCCHHHHHHHHHH--------c--CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237 117 IGNKCDLAHR--------------R-AVSTEEGEQFAKE--------H--GLIFMEASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 117 v~nK~D~~~~--------------~-~~~~~~~~~~~~~--------~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
++||.|+-++ . ....+++..+.+. . .+.+..++|.+..+|..+|..+.+.+.+..
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 9999998321 1 1234444443332 1 233556899999999999999999998876
Q ss_pred hc
Q 028237 172 QD 173 (211)
Q Consensus 172 ~~ 173 (211)
.+
T Consensus 348 lk 349 (354)
T KOG0082|consen 348 LK 349 (354)
T ss_pred HH
Confidence 54
No 287
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.41 E-value=8.4e-12 Score=102.65 Aligned_cols=161 Identities=16% Similarity=0.298 Sum_probs=112.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEeCCCcchhhhhhHHhhcCC----c
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID--NKPIKLQIWDTAGQESFRSITRSYYRGA----A 80 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d 80 (211)
-.|+|+|..++||||||.+|.+. +.+.++.+..|....+.-+ +...++.+|...|...+..+....+... -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 47999999999999999998754 3445566666666554332 2235789999998777888776665532 2
Q ss_pred EEEEEEECCCHhhH-HHHHHHHHHH-------------------------HHhcC-------------------------
Q 028237 81 GALLVYDITRRETF-NHLASWLEDA-------------------------RQHAN------------------------- 109 (211)
Q Consensus 81 ~~i~v~d~~~~~~~-~~~~~~~~~l-------------------------~~~~~------------------------- 109 (211)
++|+|+|++.|..+ +.+..|+..+ +.+.+
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 89999999988763 3333333211 11100
Q ss_pred ------------CCCcEEEEEecCCCCC---CC-C-------CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 110 ------------ANMTIMLIGNKCDLAH---RR-A-------VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 110 ------------~~~p~ivv~nK~D~~~---~~-~-------~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
.++|++||.+|.|... .+ . .....++.||..+|+.++.+|++...+++.++.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 1379999999999732 11 1 12334678888999999999999999999999998877
Q ss_pred HHHH
Q 028237 167 IYKK 170 (211)
Q Consensus 167 ~~~~ 170 (211)
+...
T Consensus 263 l~~~ 266 (472)
T PF05783_consen 263 LYGF 266 (472)
T ss_pred hccC
Confidence 6543
No 288
>PRK13768 GTPase; Provisional
Probab=99.39 E-value=5.1e-12 Score=96.96 Aligned_cols=110 Identities=19% Similarity=0.213 Sum_probs=69.5
Q ss_pred EEEEEeCCCcchh---hhhhHHhhcC-----CcEEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 56 KLQIWDTAGQESF---RSITRSYYRG-----AAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 56 ~~~i~D~~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+.+||+||+.+. ...+..+++. .+++++|+|.....+..... .++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6889999997653 3344333332 78999999996543322221 1211211111247999999999998654
Q ss_pred CCCCHHHHHH----------------------------HHHHcC--CcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 127 RAVSTEEGEQ----------------------------FAKEHG--LIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.+. +.... ..+..+ .+++++|++++.|+++++++|.+.+
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 221 11111 122233 4789999999999999999998765
No 289
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.1e-11 Score=93.49 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=105.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCC----CCCC---CCCCceeEEEEEEEEE-------CCEEEEEEEEeCCCcchh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR----FQPV---HDLTIGVEFGARMITI-------DNKPIKLQIWDTAGQESF 68 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~----~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~ 68 (211)
....++++++|+..||||||.++|..-. |+.. ..+..+.+...-...+ .+..+++.+.|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4457899999999999999999996421 2211 1222222222222222 345678899999999987
Q ss_pred hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCC--CCCCHHH-HHHHHHH---c
Q 028237 69 RSITRSYYRGAAGALLVYDITRRETFNHLASW-LEDARQHANANMTIMLIGNKCDLAHR--RAVSTEE-GEQFAKE---H 141 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~-~~~~~~~---~ 141 (211)
-+.......-.|..++|+|+......+.++.+ +.++. -...+||+||+|...+ +....++ ..+..+. .
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 77666677778999999999875544444433 23332 2346888888887432 2222222 2222222 2
Q ss_pred ----CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCC
Q 028237 142 ----GLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 179 (211)
Q Consensus 142 ----~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~ 179 (211)
+.|++++||..|.--.+-...|.+.+.++.-.+..+..
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~ 200 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE 200 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence 36899999999955555555555555555555444433
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=3.4e-11 Score=95.80 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=59.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCcchh---
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESF--- 68 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~--- 68 (211)
++|+|+|.||+|||||+|+|++........+.++.+.....+.+.+.. .++.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999987655555554555555555554421 35899999995421
Q ss_pred -hhhhHHh---hcCCcEEEEEEECC
Q 028237 69 -RSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 69 -~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
..+...+ ++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1233333 57899999999974
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=3.6e-12 Score=95.10 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=42.1
Q ss_pred CCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 111 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
..|.++++||+|+.+.............+.. .++++++|++++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999653322334444444443 3789999999999999999999874
No 292
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=3.8e-12 Score=112.41 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=80.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCC----------------CCCCCceeEEEEEEEEE--------------CC
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMITI--------------DN 52 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~ 52 (211)
.+.+.+|+|+|+.++|||||+++|+...-.. +.....++........+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4556799999999999999999997643210 00111122211222222 22
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
..+.++++||||+..|.......++.+|++|+|+|+...-...... .+..+.. .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH---CCCCEEEEEECCccc
Confidence 3678999999999999888888899999999999998754332222 2222322 378999999999985
No 293
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5.9e-12 Score=105.55 Aligned_cols=161 Identities=21% Similarity=0.216 Sum_probs=109.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC----------------EEEEEEEEeCCCcchhhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----------------KPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~ 70 (211)
.=++|+|+..+|||-|+..+.+..........++..+....+...+ +.--+.++||||++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 4589999999999999999988776665554433333222222211 012367899999999999
Q ss_pred hhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-------CCC------CCCH---
Q 028237 71 ITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLA-------HRR------AVST--- 131 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~-------~~~------~~~~--- 131 (211)
++.++...+|.+|+|+|+.. +++.+. +...+..+.|+||.+||+|.. +.. ....
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqtiES-------i~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTIES-------INLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchhHH-------HHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 99999999999999999976 433332 222233489999999999952 100 0000
Q ss_pred HH--------HHHHHHH-cC-------------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Q 028237 132 EE--------GEQFAKE-HG-------------LIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 132 ~~--------~~~~~~~-~~-------------~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~ 174 (211)
.+ +.+|++. ++ +.++++||..|+||.+|+.+|+++.+..+...
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 00 1112211 11 24788999999999999999999988876654
No 294
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=6.4e-12 Score=110.86 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=79.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC----------------CCCCCceeEEEEEEEEEC--------CEEEEEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMITID--------NKPIKLQI 59 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i 59 (211)
+...+|+|+|+.++|||||+++|+...-.. +.....++........+. +..+.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445699999999999999999998632110 001111111111222232 22578999
Q ss_pred EeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
+||||+..|.......++.+|++|+|+|+.+.-.... ...+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999999998888888999999999999987433222 223333333 368999999999985
No 295
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.34 E-value=3.8e-11 Score=104.85 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=78.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC----------------CCCceeEEEEEEE--EECCEEEEEEEEeCCCc
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMI--TIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~ 65 (211)
+..-+|+|+|+.++|||||+.+|+...-.... ....++......+ .+.+.++.++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 44568999999999999999999753211100 0001111111122 23445788999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
..|.......++.+|++|+|+|....-.... ...+...... +.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc---CCCeEEEEECchhh
Confidence 9998888888999999999999876433222 2222222222 56889999999975
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=2.5e-11 Score=82.82 Aligned_cols=114 Identities=31% Similarity=0.418 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+++..+.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998777654443 3322 233344567788999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
++.++..+++.+ |...+........|.++++||.|+.+......++.. .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999988765 766665554457889999999998443333333332 34567788888874
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.33 E-value=2.6e-11 Score=95.74 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=70.8
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CH
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--ST 131 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 131 (211)
.+.+.|.||+|....... ....+|.+++|.+....+.+..+. ..+... .-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----hheEEeehhcccchhHHHHHH
Confidence 467899999997633322 466799999997755444443322 212222 23899999998653211 12
Q ss_pred HHHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCc
Q 028237 132 EEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 175 (211)
Q Consensus 132 ~~~~~~~~~-------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~ 175 (211)
.++...... +..+++.+|+.++.|++++++.|.+.+....+.+.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~ 267 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGE 267 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCCh
Confidence 223322222 23579999999999999999999987765544443
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.32 E-value=5.5e-11 Score=89.78 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=81.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
...|+|+|++|+|||||++.+.............+. + .+ ......++.++|+||.- .. .....+.+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEE
Confidence 467999999999999999999865222111111121 1 11 11245678899999854 22 22346889999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCCCHHH----HHH-HHHH--cCCcEEEEecCCCCC
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVSTEE----GEQ-FAKE--HGLIFMEASAKTAQN 155 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~----~~~-~~~~--~~~~~~~~sa~~g~~ 155 (211)
+|......... ..++..+.. .+.|.+ +++||+|+.+... ..++ ++. +..+ .+.+++.+||+++..
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~-~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNK-TLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHH-HHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99976443222 223333332 257754 5999999864221 1122 222 2222 245799999998843
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=2.2e-11 Score=96.96 Aligned_cols=156 Identities=11% Similarity=0.133 Sum_probs=76.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC---ceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh-----h
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY-----Y 76 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~ 76 (211)
..++|+|+|.+|+|||||||.|.+-...+..... +.++.....+..... -.+.+||.||......-...| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4689999999999999999999864333222222 122333333333322 258899999954332223333 4
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CC-----CCCCC----HHHHHHHHHH----c
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL--AH-----RRAVS----TEEGEQFAKE----H 141 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~--~~-----~~~~~----~~~~~~~~~~----~ 141 (211)
..-|.+|++.+-.=.+. + ..+...+... ++|+++|-+|+|. .+ ....+ .+++++.+.+ .
T Consensus 113 ~~yD~fiii~s~rf~~n--d-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSERFTEN--D-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESSS--HH--H-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCCCCchh--h-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 55677777666432221 1 1222333333 8999999999995 11 11222 2333443332 2
Q ss_pred CC---cEEEEecCCCC--CHHHHHHHHHHHH
Q 028237 142 GL---IFMEASAKTAQ--NVEEAFIKTAATI 167 (211)
Q Consensus 142 ~~---~~~~~sa~~g~--~v~~~~~~l~~~~ 167 (211)
++ ++|.+|..+-. ++..+.+.|.+.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 43 48899988764 3555665555444
No 300
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.31 E-value=6.4e-11 Score=97.19 Aligned_cols=159 Identities=21% Similarity=0.293 Sum_probs=119.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++..|+|+.++|||.|++.|++..+......+....+....+...+....+.+-|.+-. ....+...- ..+|++.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 4678999999999999999999999988877777777887788877777778888888764 222222222 67899999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~l 163 (211)
+||.+++.++......++.-... .+.|+++|++|+|+.+..+...-+-.+++++.+++ .+.+|...... .++|..|
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 99999999998877765443222 48999999999999665433222227899999986 45566554333 8888888
Q ss_pred HHHHH
Q 028237 164 AATIY 168 (211)
Q Consensus 164 ~~~~~ 168 (211)
..+..
T Consensus 579 ~~~A~ 583 (625)
T KOG1707|consen 579 ATMAQ 583 (625)
T ss_pred HHhhh
Confidence 77654
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.31 E-value=2.4e-10 Score=91.31 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=86.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC----CCCC----------CCCCCce---eEEE-------EEEEEE-CCEEEEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK----RFQP----------VHDLTIG---VEFG-------ARMITI-DNKPIKLQIW 60 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~----~~~~----------~~~~~~~---~~~~-------~~~~~~-~~~~~~~~i~ 60 (211)
.+.|+|+|+.++|||||||+|.+. .... -+....| ++.. ...+.. ++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999887 2220 0111112 1111 222322 4556789999
Q ss_pred eCCCcchhhh-------h----------------------hHHhhc-CCcEEEEEE-ECC--C---HhhHHHHHHHHHHH
Q 028237 61 DTAGQESFRS-------I----------------------TRSYYR-GAAGALLVY-DIT--R---RETFNHLASWLEDA 104 (211)
Q Consensus 61 D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~--~---~~~~~~~~~~~~~l 104 (211)
||+|...-.+ - .+..+. ++|..|+|. |.+ + ....+.-..++.++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999421111 0 233344 889888888 663 1 11222233455555
Q ss_pred HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237 105 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (211)
Q Consensus 105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (211)
... ++|+++++|+.|.... ...+....+...++++++.+|..
T Consensus 177 k~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 177 KEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred Hhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence 544 8999999999995321 24444556667778887777654
No 302
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=6.7e-11 Score=101.42 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=87.8
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-----C-----------CCCceeEEEEEEEEECCE-EEEEEEEeCCCc
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----H-----------DLTIGVEFGARMITIDNK-PIKLQIWDTAGQ 65 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~ 65 (211)
.+..-+|+|+|+-.+|||||..+++...-... . ...-|++.....+.+..+ ++.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45677999999999999999999865321111 0 011256666666666555 599999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
-.|.......++-.|++++|+|+...-..+.-..| ..... .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADK---YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhh---cCCCeEEEEECccccc
Confidence 99999999999999999999999874433332233 22233 3899999999999754
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.29 E-value=9.2e-11 Score=90.45 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=58.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh----h
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF----R 69 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~----~ 69 (211)
|+|+|.|++|||||+|+|++........+.++.......+.+.+. ...+.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999998876655565565665555655542 235899999995421 2
Q ss_pred hhhHHh---hcCCcEEEEEEECC
Q 028237 70 SITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 70 ~~~~~~---~~~~d~~i~v~d~~ 89 (211)
.+...+ ++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 233333 56799999999863
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=1.1e-11 Score=93.07 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=68.4
Q ss_pred EEEEEEEeCCCcchh------hhhhHHhhcC--CcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 54 PIKLQIWDTAGQESF------RSITRSYYRG--AAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~------~~~~~~~~~~--~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
.+...++||||+-+. ..++...+.. ..++++|+|..+..+ .-.+..++--+.-....+.|+|+++||.|+.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 366899999997432 2333333333 347777777643221 1112222222222223489999999999996
Q ss_pred CCCCCC--HHHHHHH---HH---------------------HcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 125 HRRAVS--TEEGEQF---AK---------------------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 125 ~~~~~~--~~~~~~~---~~---------------------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
+..... ..+.+.| .+ -.++..+.+|+.+|.|.+++|..+-+.+.+...
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 532100 0001111 11 014568899999999999999988877766533
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=1e-10 Score=84.36 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=44.5
Q ss_pred EEEEEeCCCcch----hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237 56 KLQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121 (211)
Q Consensus 56 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 121 (211)
.+.|+|+||... ...++..|++.+|++|+|.++....+......+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 378999999643 3467888899999999999999866555444444443333 44589999984
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.8e-11 Score=99.30 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=103.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCC--------------------C---------CCCCCCCceeEEEEEEEEECCEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKR--------------------F---------QPVHDLTIGVEFGARMITIDNKPI 55 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~--------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..+.++++|+..+|||||+.+|+..- . .....+.-|++.......++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 36789999999999999999985321 0 011222336666666777777778
Q ss_pred EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh---hHHH---HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNH---LASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~---~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.++|.|+||+..|..........+|++++|+|++-.+ .++. +... ..+.+... -..+||.+||+|+.+-.+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccCccHH
Confidence 9999999999999888888889999999999997422 1111 1111 22222222 4568999999999763322
Q ss_pred CHHH----HHHHH-HHcC-----CcEEEEecCCCCCHHHH
Q 028237 130 STEE----GEQFA-KEHG-----LIFMEASAKTAQNVEEA 159 (211)
Q Consensus 130 ~~~~----~~~~~-~~~~-----~~~~~~sa~~g~~v~~~ 159 (211)
..++ +..|. +..| +.++++|+..|+|+...
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2222 33444 4444 45999999999987643
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.26 E-value=1e-10 Score=84.05 Aligned_cols=55 Identities=24% Similarity=0.126 Sum_probs=45.9
Q ss_pred cEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 113 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.-++|+||.|+...-..+.+...+-+++. +.+++++|+++|+|++++++|+..+.
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 35899999999887777778777777765 47899999999999999999987653
No 308
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=9.1e-12 Score=91.28 Aligned_cols=145 Identities=20% Similarity=0.299 Sum_probs=87.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----hhHHhhcCCc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----ITRSYYRGAA 80 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d 80 (211)
-||+++|..|||||++=-.+..+... +...++.++++.--.+.+-| ..-+.+||.+|++.+-. .....+++++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 48999999999999953333322211 22222222333322333333 47789999999985532 4556789999
Q ss_pred EEEEEEECCCHhhHHHHHH---HHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCH----HHHHHHHHHcCCcEEEEecC
Q 028237 81 GALLVYDITRRETFNHLAS---WLEDARQHANANMTIMLIGNKCDLAHRRA--VST----EEGEQFAKEHGLIFMEASAK 151 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~---~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~sa~ 151 (211)
++|+|||+...+-..++.. .++.+.++. +...+..+++|+|+..... ... +..+.+....++.++++|.+
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999987664444443 334444443 4677888899999965322 111 22233333344567888877
Q ss_pred CC
Q 028237 152 TA 153 (211)
Q Consensus 152 ~g 153 (211)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 64
No 309
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.24 E-value=1.4e-11 Score=93.53 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=58.2
Q ss_pred EEEEEeCCCcchhhhhhHHhh--------cCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+.|+|||||-++...+.... ...-++++++|...... ...+..++..+......+.|.+.++||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 688999999987765444433 33458899999764332 122222222222222238999999999999652
Q ss_pred CC-------------------CCHHHHHHHHHHc---C-C-cEEEEecCCCCCHHHHHHHHHHHH
Q 028237 127 RA-------------------VSTEEGEQFAKEH---G-L-IFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 127 ~~-------------------~~~~~~~~~~~~~---~-~-~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.. ......+.+++-. + . .++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0011111222221 2 3 699999999999999999876643
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.6e-10 Score=86.70 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=109.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCC-------------C-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-------------Q-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+.+|+...|||||...++..-. + .-....-|+++....+.++-...++-..|+||+..|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 368999999999999999988753210 0 11112236777777777766678888999999999987
Q ss_pred hhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCCCC---CHHHHHHHHHHcCC
Q 028237 71 ITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRRAV---STEEGEQFAKEHGL 143 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 143 (211)
.......+.|+.|+|++++| |++-+++.. .++ -+.|. ++++||+|+.+..+. -..+++.+...+++
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLl----arq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILL----ARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhh----hhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 77777788999999999987 444333211 112 26764 556699999763322 13446677777765
Q ss_pred -----cEEEEecCCCC-C---HHHHHHHHHHHHHHHHhcCcccCCCC
Q 028237 144 -----IFMEASAKTAQ-N---VEEAFIKTAATIYKKIQDGVFDVSNE 181 (211)
Q Consensus 144 -----~~~~~sa~~g~-~---v~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (211)
|++.-||..-. + -.+....|.+.+.+..+.+..+..++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkP 210 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKP 210 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCccccc
Confidence 47777765331 2 22333444555555566665555443
No 311
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.21 E-value=6.2e-11 Score=96.59 Aligned_cols=160 Identities=18% Similarity=0.353 Sum_probs=121.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+|++|+|..++|||+|+++++.+.+.....+. +-.+ .+++.+++..+.+.+.|.+|.. ...|...+|++|||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCc-Cccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 479999999999999999999988887666655 4444 4556677778889999988844 34577889999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCC--CCCCCHHHHHH-HHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH--RRAVSTEEGEQ-FAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~-~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
|.+.+..+++.+..+...+..+.. ...|+++++++.-... .+.+..+..++ .++...+.+|++++.+|.++..+|.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 999999999988887776654443 4677888777654321 22333444444 4455567899999999999999999
Q ss_pred HHHHHHHHHHh
Q 028237 162 KTAATIYKKIQ 172 (211)
Q Consensus 162 ~l~~~~~~~~~ 172 (211)
.++.++.....
T Consensus 183 ~~~~k~i~~~~ 193 (749)
T KOG0705|consen 183 EVAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHHh
Confidence 99988877644
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=2e-10 Score=90.46 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=64.2
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-- 131 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 131 (211)
.+.+.|.||+|..... ......+|.++++...... +++......+ .++|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4778899999854222 2346677888877544322 3333333222 2577899999999864321110
Q ss_pred H----HHHHHHH---HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 132 E----EGEQFAK---EHGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 132 ~----~~~~~~~---~~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
. ....+.. .+..+++.+|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0011111 12346999999999999999999988644
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.20 E-value=4.3e-11 Score=91.97 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=104.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--------hhhhHHhhcC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RSITRSYYRG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~ 78 (211)
.-|.|+|..||||||||+.|+.........-+-+.+......+... ...+.+.||.|.-.- ......-...
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 4689999999999999999996655444444434444444454443 356778899994321 1223333567
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc----EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMT----IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~ 154 (211)
+|.++.|.|+++|...+.....+..+....-...| ++=|-||+|+...... .+.+ ..+.+|+.+|.
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n--~~v~isaltgd 327 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKN--LDVGISALTGD 327 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccC--CccccccccCc
Confidence 89999999999998776666666666555333333 3445577776432111 1112 26789999999
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q 028237 155 NVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~~~~~ 174 (211)
|++++...+-.++.....-.
T Consensus 328 gl~el~~a~~~kv~~~t~~~ 347 (410)
T KOG0410|consen 328 GLEELLKAEETKVASETTVD 347 (410)
T ss_pred cHHHHHHHHHHHhhhhheee
Confidence 99999999888877765443
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.19 E-value=1.2e-09 Score=92.12 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=72.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hh---hH
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SI---TR 73 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~ 73 (211)
..++|+|+|.+|+||||++|.|++....... ....++..........+ ..+.++||||..... .+ ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 4579999999999999999999997644332 22223333222233343 678999999965421 11 22
Q ss_pred Hhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCC
Q 028237 74 SYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (211)
Q Consensus 74 ~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~ 125 (211)
.++. .+|++|+|..++.......-..++..+..... .-..+|||+|+.|..+
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 47899999987643221111233333433222 2356899999999754
No 315
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.18 E-value=1.4e-09 Score=84.47 Aligned_cols=141 Identities=15% Similarity=0.219 Sum_probs=75.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC----------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------ 68 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 68 (211)
..++|+|+|..|+|||||||.|++....... ..+..+......+.-++..+.+.++||||....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999886543332 122233333334444678899999999993211
Q ss_pred -hhhh-------HHh-------------hcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 69 -RSIT-------RSY-------------YRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 69 -~~~~-------~~~-------------~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
..+. ..+ =.++|++++.++++... .-.+ +..|.... ..+++|-|+.|.|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D----i~~mk~Ls-~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD----IEFMKRLS-KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH----HHHHHHHT-TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH----HHHHHHhc-ccccEEeEEecccccCH
Confidence 0000 001 02467999999987532 1111 22233322 36889999999997442
Q ss_pred CCC--CHHHHHHHHHHcCCcEEEEec
Q 028237 127 RAV--STEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~~~sa 150 (211)
.+. ....+..-.+..+++++....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHcCceeecccc
Confidence 211 123344555667787665443
No 316
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.18 E-value=1e-09 Score=89.59 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=81.2
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh----------hHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHAN-ANMTIMLIGNKC 121 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~ 121 (211)
....+.++|++|+...+.-|.+++.+++++|||+++.+-+ .+.+...++..+..... .+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 3478999999999999999999999999999999986422 24444445555544443 689999999999
Q ss_pred CCCC-----C-----------C--CCCHHHHHHHHHHc------------CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 122 DLAH-----R-----------R--AVSTEEGEQFAKEH------------GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 122 D~~~-----~-----------~--~~~~~~~~~~~~~~------------~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
|+-. . . ..+.+.+..+.... .+.+..++|.+..++..+|..+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9621 0 0 13445555555432 12355899999999999998887643
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.17 E-value=6.5e-10 Score=84.14 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=44.0
Q ss_pred EEEEEEeCCCcch-------------hhhhhHHhhcCC-cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237 55 IKLQIWDTAGQES-------------FRSITRSYYRGA-AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120 (211)
Q Consensus 55 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK 120 (211)
..+.++|+||... ...+...|+++. +++++|+|+...-.......+...+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 5688999999642 123566677754 58899998764322222222222232 247899999999
Q ss_pred CCCCCC
Q 028237 121 CDLAHR 126 (211)
Q Consensus 121 ~D~~~~ 126 (211)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 318
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.4e-09 Score=84.39 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=62.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC----------------EEEEEEEEeCCCcc---
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----------------KPIKLQIWDTAGQE--- 66 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~--- 66 (211)
.++++|+|.||+|||||.|.++.........|.++++...-.+.+.. ....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999999887666666667766665555432 13568899999843
Q ss_pred -hhhhhhHHh---hcCCcEEEEEEECC
Q 028237 67 -SFRSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 67 -~~~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
.-..+...| ++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 233455555 67899999999965
No 319
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.4e-10 Score=88.72 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=81.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCC--------------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
-..+|+-+|.+|||||-..|+.-.-.... ...-|+....-..+++..+..++|.|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 45789999999999999997532110000 0012555556666666667899999999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.|..-.-+.+-.+|..++|+|+...-.. ...++++.++- .+.|++=++||+|...+
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcrl---R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCRL---RDIPIFTFINKLDREGR 148 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHhh---cCCceEEEeeccccccC
Confidence 9998888888999999999998752211 12333344332 38999999999997543
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.9e-10 Score=88.73 Aligned_cols=153 Identities=18% Similarity=0.087 Sum_probs=105.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
-|+..|+-..|||||++.+++..- ++.....++.+.... ..+..+..+.+.|.||++++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~--y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFY--YRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeE--eccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 478899999999999999987543 334444444444433 334344588999999999998888888889999999
Q ss_pred EEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 85 VYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 85 v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
|++.++ +++.+.+.- +... .-...++++||+|..+.... ...++.......+.+++.+|+.+|.|++++
T Consensus 80 vV~~deGl~~qtgEhL~i----Ldll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 80 VVAADEGLMAQTGEHLLI----LDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred EEeCccCcchhhHHHHHH----HHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence 999965 444333222 2221 13345999999998653211 112222222233567999999999999999
Q ss_pred HHHHHHHHH
Q 028237 160 FIKTAATIY 168 (211)
Q Consensus 160 ~~~l~~~~~ 168 (211)
-+.|.+...
T Consensus 154 k~~l~~L~~ 162 (447)
T COG3276 154 KNELIDLLE 162 (447)
T ss_pred HHHHHHhhh
Confidence 999999884
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.7e-10 Score=83.60 Aligned_cols=163 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh---hhHHhhcCCcEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i 83 (211)
.+|++||...|||||+.+.......+.+...--.+.. ...-++.+.-+.+.+||.||+-.+.. -....++.+-++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5799999999999998877766654433222111111 11112233457899999999765433 2445688999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHH-hc-CCCCcEEEEEecCCCCCCCC--CCHHHHH-----HHH----HHcCCcEEEEec
Q 028237 84 LVYDITRRETFNHLASWLEDARQ-HA-NANMTIMLIGNKCDLAHRRA--VSTEEGE-----QFA----KEHGLIFMEASA 150 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~-~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~-----~~~----~~~~~~~~~~sa 150 (211)
||+|..+.. .+.+..+...+.+ +. .+++.+=|++.|.|-...+. .....+. .++ ....+.++.+|.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999997643 3344443333322 22 37889999999999644221 1111111 111 112234777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 028237 151 KTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
.+ ..+.|.|..+++++..+++
T Consensus 186 yD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhch
Confidence 66 4799999999999988765
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=8e-10 Score=92.14 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=84.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----------------CceeEEEEEEEE---ECCEEEEEEEEeC
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------TIGVEFGARMIT---IDNKPIKLQIWDT 62 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~ 62 (211)
.+...+|+++|+-++|||+|+..|.....+..... .+++.-...++. .+++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 56778999999999999999999977654433111 112222222222 2567788999999
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 123 (211)
||+-.|.......++.+|++++|+|+.+.-.+.. ...+... ...+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHH
Confidence 9999999999999999999999999987554333 2222222 2247899999999996
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.10 E-value=6.3e-11 Score=91.42 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=41.1
Q ss_pred CCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 111 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
..+-++|+||+|+........+...+..+.. +++++++|+++|.|++++++||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3556999999999653322344444444433 5779999999999999999999874
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=1.2e-09 Score=80.50 Aligned_cols=94 Identities=22% Similarity=0.156 Sum_probs=66.5
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcC
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHG 142 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 142 (211)
+..++..+++++|++++|+|+.++... |...+... ..+.|+++|+||+|+.... ........+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 577888999999999999999875421 11222111 2368999999999986532 2333344443 2333
Q ss_pred C---cEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 143 L---IFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 143 ~---~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
. +++++||+++.|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999999988763
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.09 E-value=4.9e-10 Score=79.86 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=65.8
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 147 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
+..+.+++.+++|++|+|+|+.++..... ..+...+. ..+.|+++++||+|+.+... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 46678889999999999999987653222 11222221 23689999999999853211 11122333445678999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~ 168 (211)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999877654
No 326
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.07 E-value=2.9e-09 Score=83.49 Aligned_cols=163 Identities=13% Similarity=0.208 Sum_probs=95.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh---h
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---S 70 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~ 70 (211)
...+.|+++|+.|.|||||+|.|++...... ..+++.+..+...+.-++..+.++++||||...+- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4578999999999999999999988733222 22333444444445556777889999999942210 0
Q ss_pred -----------hhHHh-------h-------cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 71 -----------ITRSY-------Y-------RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 71 -----------~~~~~-------~-------~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
....| . .++|++++.+.++.-. +..+. +..|.... ..+.+|-|+.|.|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~D--Ie~Mk~ls-~~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLD--IEAMKRLS-KRVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHH--HHHHHHHh-cccCeeeeeeccccCC
Confidence 11111 1 1467999999877532 11111 11222222 3577899999999844
Q ss_pred CCC--CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 126 RRA--VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 126 ~~~--~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
..+ ...+.+.+....+++++|. ..+.+.-..-.....+.+....|
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P 223 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP 223 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence 322 2234566677788899884 34544433233333444444444
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-08 Score=76.25 Aligned_cols=86 Identities=23% Similarity=0.186 Sum_probs=63.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhcC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRG 78 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 78 (211)
.-||+++|.|.+|||||+-.++............+.++.+-.+.+++ ..+++.|.||.-+-. +......+-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 35899999999999999999987655443334447777777788877 678888999943221 223345678
Q ss_pred CcEEEEEEECCCHhh
Q 028237 79 AAGALLVYDITRRET 93 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~ 93 (211)
+|.+++|.|++..+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=99.04 E-value=7.3e-10 Score=88.53 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=66.2
Q ss_pred hhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028237 69 RSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 147 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
..+.+..+.++|.+++|+|+.++. ....+..|+.... ..+.|+++|+||+|+....+ ..........++++++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 345556689999999999998765 3444556655442 24799999999999953211 12223334567888999
Q ss_pred EecCCCCCHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~ 165 (211)
+||.++.|+++++..|..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998854
No 329
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.99 E-value=2e-09 Score=81.26 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=95.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (211)
+..++++++|..++|||+|+|.++.......... ..+.+.....+.+.. ++.+.|.|| ...+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999987654432222 445555544455544 778999999 23445566
Q ss_pred HHhhcCCc---EEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-----------CCHHHHHH
Q 028237 73 RSYYRGAA---GALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-----------VSTEEGEQ 136 (211)
Q Consensus 73 ~~~~~~~d---~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~ 136 (211)
..|+.+.+ .+++++|++-+-. -.....|+.+ .++|+.+|+||+|..-... ++....-+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 66655444 5555666554221 1112233332 3899999999999732110 11111112
Q ss_pred HHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 137 FAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 137 ~~~~~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
-......|.+.+|+.++.|.++++-.|.+
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 22223356778999999999998877654
No 330
>PRK12288 GTPase RsgA; Reviewed
Probab=98.99 E-value=2.1e-09 Score=85.85 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=66.0
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAKEHGLIFMEASAKTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~g~ 154 (211)
..++|.+++|+++....++..+..|+..... .++|+++|+||+|+.+..+ ..........+..+++++++||.++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888888888888765432 3789999999999964321 11122333445678899999999999
Q ss_pred CHHHHHHHHHH
Q 028237 155 NVEEAFIKTAA 165 (211)
Q Consensus 155 ~v~~~~~~l~~ 165 (211)
|+++++..|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 331
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.5e-09 Score=81.71 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=98.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC---------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------ 68 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 68 (211)
...+.++++|..|.|||||||.|+...+... ...+.........+.-++..+.+++.||||....
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3468999999999999999999987644322 2223333443444444667788899999993211
Q ss_pred ------------hh-------hhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 69 ------------RS-------ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 69 ------------~~-------~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.. +.+.-+. ++|++++.+.++.-. +..+. +..+... ...+++|-|+.|.|.....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~D--i~~Mk~l-~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLD--IEFMKKL-SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhh--HHHHHHH-hccccccceeeccccCCHH
Confidence 00 1111122 578999999877532 11111 1222222 2367889999999975432
Q ss_pred CC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Q 028237 128 AV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~ 174 (211)
+. ....+.+-+..+++++|....-.. ++.+....+.+....|-.
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~PFA 220 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIPFA 220 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCCeE
Confidence 22 234456667778888776665544 555555566666655543
No 332
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-09 Score=80.76 Aligned_cols=118 Identities=13% Similarity=0.204 Sum_probs=80.1
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCC
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 122 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D 122 (211)
.++++++|.+|+...+.-|...+..+.++|||...+. ...+++...++..+..+.+ ..+.+|+++||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 4779999999999999999999999999999998764 2224444445555555554 5688999999999
Q ss_pred CCCCC----------------------------CCCH--HHHHHHHHHc-------------CCcEEEEecCCCCCHHHH
Q 028237 123 LAHRR----------------------------AVST--EEGEQFAKEH-------------GLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 123 ~~~~~----------------------------~~~~--~~~~~~~~~~-------------~~~~~~~sa~~g~~v~~~ 159 (211)
+..+. .... .....|.+.. .+..-.++|.+.+++..+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 84310 0111 0111122211 123445889999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 160 FIKTAATIYKKI 171 (211)
Q Consensus 160 ~~~l~~~~~~~~ 171 (211)
|....+.|+...
T Consensus 361 FnDcrdiIqr~h 372 (379)
T KOG0099|consen 361 FNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999777666543
No 333
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.6e-10 Score=86.36 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=106.7
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEE---EEECC----------------------
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARM---ITIDN---------------------- 52 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~---~~~~~---------------------- 52 (211)
|+++.+++|+-+|+...||||+++.+.+- +|..+-.+.+++...... +.+++
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 56788999999999999999999888543 222222222222111111 11110
Q ss_pred ----------EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 028237 53 ----------KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLASWLEDARQHANANMTIMLIG 118 (211)
Q Consensus 53 ----------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~l~~~~~~~~p~ivv~ 118 (211)
-..++.+.|+||++..-+.......-.|++++++..+. |++.+++... +. .. =+.++++-
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-ei-M~----LkhiiilQ 186 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EI-MK----LKHIIILQ 186 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HH-hh----hceEEEEe
Confidence 12568899999999876655555666788888888776 4444444332 11 11 24578899
Q ss_pred ecCCCCCCCC--CCHHHHHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 119 NKCDLAHRRA--VSTEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 119 nK~D~~~~~~--~~~~~~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
||+|+..+.+ ...+++..|.+.. ++|++++||.-..|++-+.++|+.++
T Consensus 187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 9999965443 2356677777765 56899999999999999988887765
No 334
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.95 E-value=1.8e-09 Score=82.60 Aligned_cols=111 Identities=15% Similarity=0.105 Sum_probs=69.4
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (211)
.+.+.|++|.|--... -.....+|.+++|.-..-.+..+.+.. -+.+.. -++++||.|....+ ....+
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~A~-~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKGAE-KAARE 210 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhhHH-HHHHH
Confidence 3668888888743332 224556898888887765555444333 233333 38999999964321 11111
Q ss_pred HHH---HH----HH--cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 028237 134 GEQ---FA----KE--HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176 (211)
Q Consensus 134 ~~~---~~----~~--~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~ 176 (211)
... +. .. |..+++.+||.+|+|++++++.+.+........+.+
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 111 11 11 234699999999999999999998887777666544
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=5.3e-09 Score=82.25 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=62.7
Q ss_pred hhcCCcEEEEEEECCCHhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 75 YYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
.+.++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+... .........+..+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988765443 4556555433 3789999999999853211 122334455667889999999999
Q ss_pred CCHHHHHHHH
Q 028237 154 QNVEEAFIKT 163 (211)
Q Consensus 154 ~~v~~~~~~l 163 (211)
.|+++++..+
T Consensus 153 ~gi~~L~~~l 162 (298)
T PRK00098 153 EGLDELKPLL 162 (298)
T ss_pred ccHHHHHhhc
Confidence 9999999876
No 336
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.91 E-value=3.4e-09 Score=78.12 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=88.2
Q ss_pred CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEEEEEe
Q 028237 51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGN 119 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~ivv~n 119 (211)
+-....+.+.|.+|+.....-|.+.++++..++|++.++. ...+++...++..+..+.+ .+.++|+++|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 3344667799999999999999999999998888877653 4445555566666766766 7899999999
Q ss_pred cCCCCCCC----------------CCCHHHHHHHHHHc----CC------cEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 120 KCDLAHRR----------------AVSTEEGEQFAKEH----GL------IFMEASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 120 K~D~~~~~----------------~~~~~~~~~~~~~~----~~------~~~~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
|.|+.++. ..+..-.++|+.+. +. .--.++|.+.+|+.-+|..+.+.+.+...
T Consensus 275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 99986532 12223344444332 21 12358899999999999999999887654
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.90 E-value=1.3e-09 Score=82.16 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=87.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCC-----------CCCCCCC---------------ceeEEEEEEEEECCE-----
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------QPVHDLT---------------IGVEFGARMITIDNK----- 53 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~----- 53 (211)
..+.|+|-|+||+|||||++.|...-. ++....+ .....+.+..-.++.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 357899999999999999999843210 0110000 012222333333221
Q ss_pred -------------EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237 54 -------------PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120 (211)
Q Consensus 54 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK 120 (211)
.+.+.|.+|.|--... ......+|.+++|+.+.-.+..+.+..= +.+.. -++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEia-----Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAG---IMEIA-----DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhh---hhhhc-----cEEEEeC
Confidence 3667788887632222 1246678999999988765543333322 22222 3899999
Q ss_pred CCCCCCCCCCHHHHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Q 028237 121 CDLAHRRAVSTEEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 121 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~ 174 (211)
.|....+ ....+++..... |..|++.+||.++.|++++++.|.+........+
T Consensus 177 aD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg 236 (266)
T PF03308_consen 177 ADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESG 236 (266)
T ss_dssp -SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence 9964321 122233333221 2347999999999999999999887665554443
No 338
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.86 E-value=1.3e-08 Score=79.55 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237 73 RSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (211)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. .......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 34588999999999999887 77777777766543 378999999999995431 1112233345578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAA 165 (211)
Q Consensus 152 ~g~~v~~~~~~l~~ 165 (211)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887753
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.84 E-value=8.6e-09 Score=72.21 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=40.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
+++++|.+|+|||||+|+|.+........ ..+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999877643322 234555555566654 5789999995
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.82 E-value=1.3e-08 Score=73.65 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=41.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
.++|+++|.+|+|||||+|+|.+........ ..|++.....+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEeCC---CEEEEECcC
Confidence 4799999999999999999999876533322 235666666665543 578999998
No 341
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=4.8e-08 Score=72.50 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=81.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCC---------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh---hh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---RS 70 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~~ 70 (211)
..-.++|.|+|.+|.|||||+|.|....... ....|..+.....++.-++..+++.++||||...+ ..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 3446899999999999999999987643322 11112222222333444566788999999994321 11
Q ss_pred hhH-----------Hh------------hc--CCcEEEEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 71 ITR-----------SY------------YR--GAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 71 ~~~-----------~~------------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
.|. .| +. .+++.++.+..+.-. +..+ ..++..+.+ -+.++-|+.|.|-.
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE----VVNVVPVIAKADTL 197 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh----hheeeeeEeecccc
Confidence 111 11 11 466888888777532 1111 112222222 35577778899963
Q ss_pred C--CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 125 H--RRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 125 ~--~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
. ++....+.+++-...+++.+++--..+-
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 2 2222233444455567787776555543
No 342
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1e-07 Score=74.11 Aligned_cols=171 Identities=22% Similarity=0.199 Sum_probs=110.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC----C------CC----CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK----R------FQ----PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~----~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+-+|+...|||||--.++.- . +. ......-|+++....+.++-...+.-=.|+||+..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 3579999999999999998877431 0 00 01111237777777787777677788889999999987
Q ss_pred hhHHhhcCCcEEEEEEECCCH---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-C--HHHHHHHHHHcC--
Q 028237 71 ITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-S--TEEGEQFAKEHG-- 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~--~~~~~~~~~~~~-- 142 (211)
........-|+.|+|+..+|. ++-+++. .-++.. -..++|++||.|+.+..+. . +-+++++..+++
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlL----LArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLL----LARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHH----HHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 777778889999999999983 3333221 111111 2457778899999743222 1 223456666665
Q ss_pred ---CcEEEEec---CCCCCHH---HHHHHHHHHHHHHHhcCcccCCCC
Q 028237 143 ---LIFMEASA---KTAQNVE---EAFIKTAATIYKKIQDGVFDVSNE 181 (211)
Q Consensus 143 ---~~~~~~sa---~~g~~v~---~~~~~l~~~~~~~~~~~~~~~~~~ 181 (211)
+|++.-|| .+|.+-+ +....|.+.+-+..+.++.+.+++
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~p 254 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKP 254 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCC
Confidence 46887665 4553222 345556666666666666665554
No 343
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=6.2e-08 Score=78.16 Aligned_cols=95 Identities=26% Similarity=0.328 Sum_probs=70.3
Q ss_pred cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH----HHHHH
Q 028237 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE----QFAKE 140 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 140 (211)
.+.|..+...+++.++++++|+|+.+.. ..|...+..+.. +.|+++|+||+|+.+.. ...+.+. +++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 5678888889999999999999997754 234444444432 67999999999986532 3344444 34566
Q ss_pred cCC---cEEEEecCCCCCHHHHHHHHHHH
Q 028237 141 HGL---IFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 141 ~~~---~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
.++ .++.+||++|.|++++|+.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998653
No 344
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.75 E-value=1.3e-07 Score=86.82 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=70.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc--------hhhhhhHH
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE--------SFRSITRS 74 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 74 (211)
.+|+|++|+||||+|+.- +..++-.. ...++.+.....+..+ +-.++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~----~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD----EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC----CEEEEcCCCccccCCCcccccHHHHHH
Confidence 578999999999999886 33332211 1112222223333222 34499999922 22334555
Q ss_pred hh---------cCCcEEEEEEECCC-----Hhh----HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 75 YY---------RGAAGALLVYDITR-----RET----FNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 75 ~~---------~~~d~~i~v~d~~~-----~~~----~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
++ +..+++|+++|+.+ ++. ...++..+.++........|++|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 53 35789999999754 221 23445566777777778999999999999854
No 345
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=4.6e-08 Score=69.62 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=56.5
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.+.... ......+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988765432 12221 1122247899999999998532110 11112233333556899999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 160 FIKTAATIYKK 170 (211)
Q Consensus 160 ~~~l~~~~~~~ 170 (211)
++.+.+...+.
T Consensus 77 ~~~i~~~~~~~ 87 (155)
T cd01849 77 ESAFTKQTNSN 87 (155)
T ss_pred HHHHHHHhHHH
Confidence 99998775544
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=3.8e-08 Score=70.21 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=38.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
.++|+++|.+|+|||||+|+|.+......... .+.+.....+.... .+.+.||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEEcCC---CEEEEECcC
Confidence 57899999999999999999998655333222 24444444444432 367999999
No 347
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=1.6e-07 Score=75.07 Aligned_cols=83 Identities=19% Similarity=0.079 Sum_probs=61.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh--
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF-- 68 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~-- 68 (211)
++++|+|.|++|||||++.|+.... .....+.++.......+.+.+. ...+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999877 5555555555665656665542 246889999995432
Q ss_pred -----hhhhHHhhcCCcEEEEEEECC
Q 028237 69 -----RSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 69 -----~~~~~~~~~~~d~~i~v~d~~ 89 (211)
.......++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 112334478899999999974
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=7.2e-08 Score=68.76 Aligned_cols=91 Identities=14% Similarity=0.063 Sum_probs=57.1
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~ 154 (211)
.++.+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+.+... .......+.+......+.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence 467899999999999864321 1122222222 233589999999999854221 1111222222222335789999999
Q ss_pred CHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIY 168 (211)
Q Consensus 155 ~v~~~~~~l~~~~~ 168 (211)
|++++++.+.+...
T Consensus 82 ~~~~L~~~l~~~~~ 95 (157)
T cd01858 82 GKGSLIQLLRQFSK 95 (157)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999876543
No 349
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3e-07 Score=72.37 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=78.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCCceeEEEEEEEEE------CCE----------------------
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITI------DNK---------------------- 53 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~------~~~---------------------- 53 (211)
.+....|+++|.=..||||||+.|+.+.++... -+..+++.......- .+.
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 345678999999999999999999998776321 112222222222111 110
Q ss_pred -----------EEEEEEEeCCCc-----------chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCC
Q 028237 54 -----------PIKLQIWDTAGQ-----------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 111 (211)
Q Consensus 54 -----------~~~~~i~D~~G~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~ 111 (211)
--++.|+||||. -.|.....-|...+|.+|++||+..-+--++....+..+..+ .
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c
Confidence 034889999993 134556667889999999999987655444445555555444 4
Q ss_pred CcEEEEEecCCCCC
Q 028237 112 MTIMLIGNKCDLAH 125 (211)
Q Consensus 112 ~p~ivv~nK~D~~~ 125 (211)
-.+-||+||.|..+
T Consensus 212 dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 212 DKIRVVLNKADQVD 225 (532)
T ss_pred ceeEEEeccccccC
Confidence 45778899999754
No 350
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.71 E-value=8.5e-07 Score=71.31 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=83.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCC--------------CCCCC-------Cc---eeEEEEEEEEE-CCEEEEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDL-------TI---GVEFGARMITI-DNKPIKLQIW 60 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~-------~~---~~~~~~~~~~~-~~~~~~~~i~ 60 (211)
-+-|+|+|+..+||||||++|...-.. +-+.. |+ .+.-....+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 467999999999999999998432110 00000 00 12222333444 4668999999
Q ss_pred eCCCcc-------------------hhhhh-----------hHHhhcCCc-EEEEEEECC--C--HhhHHHHH-HHHHHH
Q 028237 61 DTAGQE-------------------SFRSI-----------TRSYYRGAA-GALLVYDIT--R--RETFNHLA-SWLEDA 104 (211)
Q Consensus 61 D~~G~~-------------------~~~~~-----------~~~~~~~~d-~~i~v~d~~--~--~~~~~~~~-~~~~~l 104 (211)
|+.|.- +|... .+-.-.++. ++++.-|-+ + ++.+..+. ..+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999821 11110 001112222 555555533 2 22333322 344555
Q ss_pred HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 028237 105 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT 152 (211)
Q Consensus 105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (211)
... ++|+++++|-.+.. .....+...++.++++++++.++...
T Consensus 177 k~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 444 89999999999863 33456777888889999988877553
No 351
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.71 E-value=5.9e-07 Score=71.12 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=97.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC--------------ceeEEEEEEEEECC-E---------------
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT--------------IGVEFGARMITIDN-K--------------- 53 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~--------------- 53 (211)
...+.|+++|+.++|||||+-.|..+..+...-.+ .+-+.+...+-+++ +
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 34688999999999999999888766554432221 13333333343332 1
Q ss_pred -----EEEEEEEeCCCcchhhh--hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 54 -----PIKLQIWDTAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 54 -----~~~~~i~D~~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
+.-+.+.|+.|++.|-+ +....-+..|..++++.+++.-+-- ..+.+..+.. -..|++|++||+|+...
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcH
Confidence 23477899999999865 4444456789999999998854311 1122222222 38999999999999653
Q ss_pred CCCC--HHHHHH----------------------HHHHcC---CcEEEEecCCCCCHHHHHHHHH
Q 028237 127 RAVS--TEEGEQ----------------------FAKEHG---LIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 127 ~~~~--~~~~~~----------------------~~~~~~---~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
+... .+++.+ .+.+.+ +|+|.+|+.+|+|++-+.+.+.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 2110 111111 111112 4799999999999876655443
No 352
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2e-08 Score=79.99 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=97.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC--------CCCC--------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR--------FQPV--------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
-+|+|+.+-.+||||...+++.-. .+.. ....-|++....-+.++++.++++++||||+-.|.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 479999999999999999975421 1111 111237888888899999999999999999999998
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 144 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
...+.++-.|+++.|||.+-.-..+.+..|.+ ....+.|.+.++||+|..... ....+...-++.++.
T Consensus 118 everclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an--fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN--FENAVDSIEEKLGAK 185 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh--hhhHHHHHHHHhCCc
Confidence 89999999999999999986544444555543 333589999999999985432 122334444555553
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=6.7e-08 Score=69.95 Aligned_cols=57 Identities=28% Similarity=0.386 Sum_probs=41.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..++++++|.+|+|||||+|+|.+..+... ....+++.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 347899999999999999999998776422 2223455555555554 35789999994
No 354
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.5e-07 Score=78.12 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=84.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCC----------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.-+|+++-+-.+||||+-++.+...-... ....-+++....-..+.+.+++++++||||+-.|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 34788899999999999999754321110 11122666666666666678999999999999999
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
-.....++-.|++++|++....-.-+....|.+ +.++ ++|.+.++||+|..
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRM 169 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhc
Confidence 888899999999999999876443333444433 3444 89999999999974
No 355
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.65 E-value=1.3e-07 Score=73.53 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=65.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcch---
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQES--- 67 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 67 (211)
.++++|+|.|++|||||+|.|+.........|.++++.....+.+... +..++++|++|.-.
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 479999999999999999999999998888888888887776666432 45689999998432
Q ss_pred -hhhhhHHh---hcCCcEEEEEEECC
Q 028237 68 -FRSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 68 -~~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
-..+...| ++.+|+++.|+++.
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEec
Confidence 23344555 67899999999864
No 356
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.4e-06 Score=73.50 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=82.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEE-----------------------------------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----------------------------------------- 43 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 43 (211)
...||++.|..++||||++|.++....-+.....++.-+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 468999999999999999999976544222111100000
Q ss_pred --EEEEEEECCE-----EEEEEEEeCCCcc---hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc
Q 028237 44 --GARMITIDNK-----PIKLQIWDTAGQE---SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 113 (211)
Q Consensus 44 --~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p 113 (211)
....+.+++. .-.+.+.|.||.. ..+.-...+...+|++|||.+..+..+..+. ++ +......+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~F---f~~vs~~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QF---FHKVSEEKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HH---HHHhhccCCc
Confidence 0011111111 0136788999954 4555666778899999999999876643331 22 2222222445
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHcCC--------cEEEEecCC
Q 028237 114 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGL--------IFMEASAKT 152 (211)
Q Consensus 114 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~~ 152 (211)
+.++.||.|.........+++.+=..+... .++.+||+.
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 666668889754433333444333333321 277888664
No 357
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.64 E-value=1.1e-06 Score=72.46 Aligned_cols=135 Identities=16% Similarity=0.266 Sum_probs=86.0
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc-------------------------------------------
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------------------------------------------- 39 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~------------------------------------------- 39 (211)
.+...+|+|+|...+||||.+..+...+..+.-....
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 4667899999999999999999875433221111100
Q ss_pred ---------eeEEE--EEEEEECCE-EEEEEEEeCCCc-------------chhhhhhHHhhcCCcEEEEEEECCCHhh-
Q 028237 40 ---------GVEFG--ARMITIDNK-PIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRET- 93 (211)
Q Consensus 40 ---------~~~~~--~~~~~~~~~-~~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~- 93 (211)
|.+.. ....++.|. --+..+.|.||. +....+..+|..+.+++|+|+-=...+.
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 22222 222333332 245789999992 3445688899999999999985332221
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028237 94 FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 140 (211)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
-..+.++...+ ...+...|+|++|+|+.+..-.+++.++++..-
T Consensus 465 RSnVTDLVsq~---DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 465 RSIVTDLVSQM---DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhHHHHHHhc---CCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 11222332222 234888999999999988777778888777654
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=1.6e-07 Score=73.59 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=42.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..++++|+|.+|+|||||+|.|.+....... ...+.+.....+.++. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 4579999999999999999999987653332 2335555555565543 57799999953
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.62 E-value=8.9e-08 Score=70.47 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=40.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
.+++++|.+|+|||||+|.|.+.... .......+++.....+.++. .+.++||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 57999999999999999999975431 12223335666666666653 4689999993
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.5e-07 Score=67.05 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=39.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
...+++++|.+|+|||||+|+|.+... ....++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 357899999999999999999996543 23334445554444333333 688999999
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.61 E-value=1.4e-07 Score=73.52 Aligned_cols=57 Identities=30% Similarity=0.479 Sum_probs=42.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..++++|+|.+|+|||||+|+|.+........ ..+.+.....+.+.. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence 35789999999999999999999876443322 235555555666543 5689999996
No 362
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.3e-07 Score=78.79 Aligned_cols=117 Identities=20% Similarity=0.197 Sum_probs=82.8
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.+.+-+|+++.+...|||||...|....-. .....+-|++...-.+....+++.++++|+|||-.|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 455678999999999999999998754321 111222344444444545456799999999999999
Q ss_pred hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 123 (211)
.+......+-+|++++++|+...-..+. +..+++....+...++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence 9999999999999999999986332222 22222222236678999999993
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=2.2e-07 Score=67.25 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=61.7
Q ss_pred hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028237 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA 148 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.......++++|++++|+|+.++...... .+... . .++|+++|+||+|+.+... .....++.+..+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~---~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI---L--GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH---h--cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34456678899999999999876542211 11111 1 2579999999999853211 111222333344568999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~~ 169 (211)
|++++.|++++...+.+.+..
T Consensus 82 Sa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred ECCCcccHHHHHHHHHHHHHH
Confidence 999999999999998887643
No 364
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=1e-07 Score=75.63 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=46.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
.++++|+|.+|+|||||||+|.+........ ..|.|.....+.+... +.++||||.-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEcCCC---eEEecCCCcC
Confidence 4789999999999999999999987743333 3389998888888763 7799999943
No 365
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=5.7e-07 Score=70.98 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=93.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC----------------C-------ceeEEEEEEEEECC---------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------T-------IGVEFGARMITIDN--------- 52 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~~~~~~--------- 52 (211)
..+|++|+|...+|||||+-.|+.+..+...-. + .|.+-....+.+..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 368999999999999999988876544322111 1 12222222222211
Q ss_pred -EEEEEEEEeCCCcchhhhhhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC--
Q 028237 53 -KPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR-- 127 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-- 127 (211)
...-+.++|.+|+..|.....+.+. ..|...+|++++..-.+. .++.+..+.. -++|+.|+++|+|+.+..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 1234789999999998775555544 357888888887643221 1222222222 289999999999996641
Q ss_pred ----------------------CCCHHHHHHHHHHc----CCcEEEEecCCCCCHHHHHHH
Q 028237 128 ----------------------AVSTEEGEQFAKEH----GLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 128 ----------------------~~~~~~~~~~~~~~----~~~~~~~sa~~g~~v~~~~~~ 162 (211)
.-+.++.-..+++. =.|+|.+|...|+|++-+-..
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 11222333333332 147999999999998755443
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.54 E-value=8.3e-07 Score=69.17 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=62.6
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
......++.+|++++|+|+.++.+.+.. .+...+ .++|+++|+||+|+.+... .....+..+..+.+++.+|
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence 3456678899999999999876543221 111111 2689999999999853211 1111222233456789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 028237 150 AKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~~~~ 170 (211)
++++.|+.++.+.+.+.+.+.
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHh
Confidence 999999999999888776554
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.54 E-value=2.1e-06 Score=64.83 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=55.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEEC---CEEEEEEEEeCCCcchhh------hhhH
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITID---NKPIKLQIWDTAGQESFR------SITR 73 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~------~~~~ 73 (211)
...-|.|+|++++|||+|+|.|++. .+....... ..+......... +....+.++||+|..... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~-~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQ-QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCC-CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 3567999999999999999999998 665443322 222222222222 235789999999965332 2222
Q ss_pred HhhcC--CcEEEEEEECCCHh
Q 028237 74 SYYRG--AAGALLVYDITRRE 92 (211)
Q Consensus 74 ~~~~~--~d~~i~v~d~~~~~ 92 (211)
..+.. ++.+|+..+.+...
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33333 78888888776533
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.51 E-value=1.3e-07 Score=67.09 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=33.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCC------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQP------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++++|++|+|||||+|.|.+..... ......-++.....+.+.... .++||||...+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 57899999999999999999863221 111111222234445554323 488999976554
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=4.6e-07 Score=63.40 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=52.3
Q ss_pred HHhhcCCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237 73 RSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (211)
...+..+|++++|+|+.++.+.. .+..++.. . ..++|+++++||+|+.+.. ......+..+..+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence 34578899999999998876533 33333332 1 1478999999999985422 122334555566778999999
Q ss_pred CCCCC
Q 028237 151 KTAQN 155 (211)
Q Consensus 151 ~~g~~ 155 (211)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.46 E-value=5.2e-07 Score=64.21 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=38.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...+++++|.+|+|||||+|.|.+... .....+ +++.....+.+. ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCCC
Confidence 457899999999999999999998653 222222 333333344443 35789999983
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=3e-06 Score=60.46 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
+++.|+.|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998865
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=98.39 E-value=6.7e-07 Score=71.65 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=37.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCC------ceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------IGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
++|+|.+|+|||||||+|++.......... --++.....+.+.+.. .++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 689999999999999999976433221111 0123334445554322 389999987665
No 373
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.39 E-value=2.8e-06 Score=66.58 Aligned_cols=125 Identities=19% Similarity=0.183 Sum_probs=74.9
Q ss_pred CCCcc-hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028237 62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
.|||- .........+..+|++++|+|+.++.+.+. .++.... .++|+++|+||+|+.+.. .......+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~--~~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE--VTKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH--HHHHHHHHHHH
Confidence 35543 223345666889999999999987654322 1111111 168999999999985321 11122222334
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCC
Q 028237 141 HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGP 195 (211)
Q Consensus 141 ~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (211)
.+.+++.+|+.++.|+.++.+.+.+.+.+...... ........+++.-.|.|+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~G~pnv 132 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEKNERRK-AKGMRPRAIRAMIIGIPNV 132 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhh-hcccCcCceEEEEECCCCC
Confidence 46778999999999999999988887655432111 1111223455555566643
No 374
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=6.3e-06 Score=66.75 Aligned_cols=94 Identities=24% Similarity=0.332 Sum_probs=62.7
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH----HHHHc
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAKEH 141 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~ 141 (211)
+.|...........+.+++|+|+.|.. ..|...+.+... +.|+++|+||+|+... ....+.+.. +++..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 345554444443344999999998743 223444444332 6799999999999653 233344433 35555
Q ss_pred CC---cEEEEecCCCCCHHHHHHHHHHH
Q 028237 142 GL---IFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 142 ~~---~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998654
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.1e-06 Score=70.42 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=36.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCce-------eEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-------VEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
++|+|++|+|||||||.|.+.......... + ++.....+.+.+.. .++||||...+.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs-~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVS-GKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcccccccccc-CCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 799999999999999999975432221111 1 23333445454322 589999976544
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=98.31 E-value=3e-06 Score=68.34 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=57.1
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~ 154 (211)
..++|.+++|+++..+.....+..++..... .+.|.+||+||+|+.+.. .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 5789999999999744444444444444333 377889999999996431 112222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 028237 155 NVEEAFIKTA 164 (211)
Q Consensus 155 ~v~~~~~~l~ 164 (211)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999988874
No 377
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=6.8e-05 Score=52.74 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCC-Cc------------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA-GQ------------------ 65 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~------------------ 65 (211)
..+||.|-|+||+|||||+..+...-....+.-. -+...++.-.++..-|.+.|+. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg---Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG---GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee---eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999987643222222211 1222233344555555666655 21
Q ss_pred ---chhhh----hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 028237 66 ---ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA 138 (211)
Q Consensus 66 ---~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 138 (211)
+.+.. .....++.+|++ ++|=-.+..+. ...+...+........|++..+.+.+. ...+.++.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-------~P~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-------HPLVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-------ChHHHHhh
Confidence 11111 223334445544 45543332211 123444455555558898888877653 22233333
Q ss_pred HHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 139 KEHGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 139 ~~~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
...++.++ .+..|=+.++..+.+.+
T Consensus 151 ~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE----EccchhhHHHHHHHHHh
Confidence 33333333 44445456666666544
No 378
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=5.3e-06 Score=75.02 Aligned_cols=111 Identities=24% Similarity=0.316 Sum_probs=66.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCC-CCC-----CCceeEEEEEEEEECCEEEEEEEEeCCCc--------chhhhhhHH
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQP-VHD-----LTIGVEFGARMITIDNKPIKLQIWDTAGQ--------ESFRSITRS 74 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~ 74 (211)
.+|||++|+||||++..-- ..|+. ... ...+ +..+. .-+. -+-.++||.|. +.....|..
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cd-wwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCD-WWFT---DEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccC-cccc---cceEEEcCCcceecccCcchhhHHHHHH
Confidence 4688999999999885532 22211 111 1111 11111 1122 24458899982 123345554
Q ss_pred h---------hcCCcEEEEEEECCC-----Hhh----HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 75 Y---------YRGAAGALLVYDITR-----RET----FNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 75 ~---------~~~~d~~i~v~d~~~-----~~~----~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+ .+..+++|+.+|+.+ +.. ...++.-++++........|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 4 345789999999754 221 22344446667777778999999999999854
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=1.4e-05 Score=63.40 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=60.6
Q ss_pred EEEEEEEeCCCcchhhh----hhHHh--------hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSY--------YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 121 (211)
.+.+.|+||||...... ....+ -...+..++|+|++... +.+.+. ...... -.+.-+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEECC
Confidence 46789999999643221 11111 13467889999998532 222221 111111 13457889999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
|.... .-.+..+....++|+..++ +|++++++-..=.+.+.+.
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~~~ 312 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFVDA 312 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHHHH
Confidence 95322 3344555677789988887 7888877655444444443
No 380
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.6e-05 Score=59.78 Aligned_cols=161 Identities=22% Similarity=0.278 Sum_probs=97.5
Q ss_pred eeeEEEEcCCCC--CHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE--EEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--PIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 6 ~~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..-++|+|-.|+ ||.+|+.+|....+.........+.++..++.-... ++.+.|.- --+++.-......+...+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcish--icde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISH--ICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeec--ccchhccCCcccccceee
Confidence 356889999998 999999999988777666555444554443322221 22333221 112222122223444569
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-----------------------------------
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----------------------------------- 126 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----------------------------------- 126 (211)
+++|||++....+..+..|+.......- --++.++||+|...+
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 9999999999999999998754322210 124556788886431
Q ss_pred ------CC---CCHHHHHHHHHHcCCcEEEEecCCC------------CCHHHHHHHHHHHHHHH
Q 028237 127 ------RA---VSTEEGEQFAKEHGLIFMEASAKTA------------QNVEEAFIKTAATIYKK 170 (211)
Q Consensus 127 ------~~---~~~~~~~~~~~~~~~~~~~~sa~~g------------~~v~~~~~~l~~~~~~~ 170 (211)
.. ........|+.++++.+++.++... .||..+|..|-..+-..
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 00 1122246678888999999998533 36777777765544433
No 381
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=2e-06 Score=65.80 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=36.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++++|.+|+|||||+|.|.+....... ....-++.....+.+.+. .++||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence 6789999999999999999975432211 111112333344444432 599999976554
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.21 E-value=2.4e-06 Score=69.10 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=39.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCC----CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
.++.|+|.+|+|||||||+|..... .....+..|+|.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 3789999999999999999986431 1112233356666666666442 3699999964
No 383
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.21 E-value=3.5e-05 Score=59.90 Aligned_cols=102 Identities=19% Similarity=0.067 Sum_probs=58.9
Q ss_pred EEEEEEEeCCCcchhhhhh----HH---h-----hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237 54 PIKLQIWDTAGQESFRSIT----RS---Y-----YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 121 (211)
.+.+.++||+|....+... .. . -...|..++|+|++... +.+... ....... .+.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~-~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQA-KVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHH-HHHHhhC---CCCEEEEEcc
Confidence 4678999999965433211 11 1 12378999999997432 222221 2222111 2467889999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
|.... .-.+..+....++|+..++ +|.+++++-..=.+.+
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~~~ 267 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPFDADWF 267 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHHHH
Confidence 96432 3334555556688977777 7777776654333333
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.20 E-value=4.5e-06 Score=67.46 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=40.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC----CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++.++|.+|+|||||+|+|+..... .......+++.....+.+++ .+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCCh
Confidence 47999999999999999999975321 12223335555555555533 2469999996543
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=7.1e-06 Score=63.62 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=64.8
Q ss_pred hhHHhhcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028237 71 ITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
+.+--..+.|-.++|+.+.+|+- ...+..++-.... .++..++++||+|+.+......++.+......+.+++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 33344556788888888887763 3333333333222 3788888999999976544333456778888999999999
Q ss_pred cCCCCCHHHHHHHHHH
Q 028237 150 AKTAQNVEEAFIKTAA 165 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~ 165 (211)
++++.+++++...+..
T Consensus 149 ~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 149 AKNGDGLEELAELLAG 164 (301)
T ss_pred CcCcccHHHHHHHhcC
Confidence 9999999999887654
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=98.19 E-value=1e-05 Score=64.44 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=59.7
Q ss_pred EEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
+.+.|+||+|...... ....+ .-..|..++|+|+..... .+.+ ...... -..--+++||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~---~~~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA---VGIDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc---CCCCEEEEeeecCCCC-
Confidence 5689999999653221 11222 235788999999865332 1111 111111 1235778999997432
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
.--+..++...+.|+..++ +|.+++++...=.+.+.++
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~ 332 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDK 332 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHH
Confidence 2233444555688877776 7888887765444444443
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.18 E-value=2.6e-05 Score=63.95 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+.+.|+||+|...... ....+ ....+.+++|+|++-.....+.. ..+... -.+.-+|+||.|-...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~ar- 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHAK- 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCCC-
Confidence 46889999999653322 11122 23567899999987543222111 222111 2366888999996321
Q ss_pred CCCHHHHHHHHHHcCCcEEEE
Q 028237 128 AVSTEEGEQFAKEHGLIFMEA 148 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.-.+..+....+.|+..+
T Consensus 255 ---gG~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 255 ---GGGALSAVAATKSPIIFI 272 (429)
T ss_pred ---ccHHhhhHHHHCCCeEEE
Confidence 112334445556664443
No 388
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.15 E-value=1.1e-05 Score=60.92 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=52.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-------hhhhHHhhcCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RSITRSYYRGA 79 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 79 (211)
-++.++|.|.+|||||+..|.+...........+.+...-.+.+++ -++++.|.||.-+- ........+-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3899999999999999999987655433333323333333344444 67888999994221 11222335667
Q ss_pred cEEEEEEECCC
Q 028237 80 AGALLVYDITR 90 (211)
Q Consensus 80 d~~i~v~d~~~ 90 (211)
+.+++|.|+..
T Consensus 138 nli~~vld~~k 148 (358)
T KOG1487|consen 138 NLIFIVLDVLK 148 (358)
T ss_pred cEEEEEeeccC
Confidence 78888888654
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.14 E-value=4.6e-06 Score=64.63 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=37.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+++|++|+|||||+|+|..... .......-=++.....+.+.+... |.||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 467999999999999999986422 112211112333455566643232 88999987665
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.13 E-value=5.4e-06 Score=64.98 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=38.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC------CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.++++|++|+|||||+|.|.+........ ....++.....+...... .++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 368999999999999999998764432211 111233334445554322 489999987654
No 391
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.6e-05 Score=66.12 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=66.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
++=|+|+|++|+||||||+.|...--........| .. ..+.++..++.+.++|. + ... .....+-+|+++++
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~-D-l~~-miDvaKIaDLVlLl 140 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPS-D-LHQ-MIDVAKIADLVLLL 140 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChH-H-HHH-HHhHHHhhheeEEE
Confidence 56788999999999999998875322111111101 11 23567788999999993 2 222 23346678999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLA 124 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~ 124 (211)
+|.+-...++. ..+++.+..+ +.| ++-|+|..|+-
T Consensus 141 IdgnfGfEMET-mEFLnil~~H---GmPrvlgV~ThlDlf 176 (1077)
T COG5192 141 IDGNFGFEMET-MEFLNILISH---GMPRVLGVVTHLDLF 176 (1077)
T ss_pred eccccCceehH-HHHHHHHhhc---CCCceEEEEeecccc
Confidence 99875443333 2334444444 556 45567999983
No 392
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.08 E-value=4.5e-06 Score=68.40 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=45.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
.+.|++||.||+||||+||.|.+...- ....|.|-+...+++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 589999999999999999999987653 3444557888888887776 5668899994
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=98.07 E-value=8.6e-06 Score=64.19 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=36.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC------ceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------IGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++++|++|+|||||+|.|.+.......... .-++.....+.+.+. ..++||||...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 5889999999999999999876433221111 012233344444432 358999997644
No 394
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.04 E-value=1.4e-05 Score=58.17 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=43.7
Q ss_pred EEEEEEeCCCcchhhhh---hH--HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRSI---TR--SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~---~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
....+.++.|...-..+ .. ...-..+.+|.|+|+.+-.....+...+..-..++ -+|++||+|+.+.. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-h
Confidence 45667788885544433 01 11234579999999976433333333333323333 38899999986543 2
Q ss_pred CHHHHHHHHHHcC
Q 028237 130 STEEGEQFAKEHG 142 (211)
Q Consensus 130 ~~~~~~~~~~~~~ 142 (211)
..+..++..++.+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2355666665543
No 395
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.01 E-value=0.00019 Score=57.05 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=52.3
Q ss_pred EEEEEEeCCCcchhhhhhHHhhc--------CCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
....++++.|...-..+...++. ..+.+|.|+|+.+-.. .+.......++. .--+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 44577888887665555544422 2478999999875322 111111222222 12388999999865
Q ss_pred CCCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Q 028237 126 RRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~~v~~~~ 160 (211)
. .+.+++..+..+ ++++.+. ........+|
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 2 245555555543 5566544 3234444444
No 396
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=5.6e-05 Score=57.73 Aligned_cols=59 Identities=27% Similarity=0.465 Sum_probs=43.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC----ceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
.++|+-+|..|-|||||+..|.+..+...+.+. +..........-.+..+++.+.||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 589999999999999999999998876554442 22222222233356678899999998
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.94 E-value=6.6e-05 Score=52.95 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 122 (211)
.+.+.|.|++|..... ..++..+|.+|+|..+.--+.+.-+. ..+... --++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~~-----~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIMEI-----ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhhh-----cCEEEEeCCC
Confidence 4678899998854222 34888899999988887333222211 122222 2388899987
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00017 Score=58.22 Aligned_cols=139 Identities=15% Similarity=0.077 Sum_probs=71.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCC-C--CCCCceeEEE----------------EEEEEEC-----------CEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-V--HDLTIGVEFG----------------ARMITID-----------NKPIK 56 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~--~~~~~~~~~~----------------~~~~~~~-----------~~~~~ 56 (211)
-.++|+|++|+||||++..|....... . ....++.+.+ .....+. .....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 368899999999999999986532110 0 0000011110 0001111 12457
Q ss_pred EEEEeCCCcchhhhhh---HHhh---cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCC
Q 028237 57 LQIWDTAGQESFRSIT---RSYY---RGAAGALLVYDITR-RETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~---~~~~---~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~ 127 (211)
+.++||+|....+... ...+ ....-.++|++++. .+.+..+...+........ ..-+-=+|+||.|-.
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt--- 294 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA--- 294 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC---
Confidence 8899999966433211 1112 22345688888875 4444443332332211100 001346778999953
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 028237 128 AVSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (211)
...-.+..+....+.|+..++
T Consensus 295 -~~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 295 -SNLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred -CCccHHHHHHHHHCcCeEEEe
Confidence 234556677777788755444
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00037 Score=58.51 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCcchhhhhhHH---hh--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRSITRS---YY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
.+.+.|+||+|....+..... .+ ......++|++.+.. ...+...+..+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt---- 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDET---- 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCc----
Confidence 467899999996543321110 01 112356677776632 2222232222222 24677999999963
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 129 VSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
...-.+..+....+.++..++ +|..|
T Consensus 498 ~~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 498 GRFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred cchhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 234566677777788855554 44455
No 400
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.87 E-value=0.00061 Score=54.12 Aligned_cols=143 Identities=19% Similarity=0.178 Sum_probs=76.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCC------CCCCCceeE----------------EEEEEEEECC-------------E
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQP------VHDLTIGVE----------------FGARMITIDN-------------K 53 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~----------------~~~~~~~~~~-------------~ 53 (211)
.+|-|.-|||||||+|+++.+.... .....++++ -.....++++ .
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 4678999999999999998664311 000111111 0011111100 1
Q ss_pred EEEEEEEeCCCcchhhhhhHHhh--------cCCcEEEEEEECCCHhhHHH-HHH-HHHHHHHhcCCCCcEEEEEecCCC
Q 028237 54 PIKLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRETFNH-LAS-WLEDARQHANANMTIMLIGNKCDL 123 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~-~~~-~~~~l~~~~~~~~p~ivv~nK~D~ 123 (211)
.....++++.|...=......++ -..|++|-|+|+.+-..... +.. ...++. .+ -+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~A-----D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-FA-----DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-hC-----cEEEEecccC
Confidence 13455777777544333333232 23568999999876443222 222 233332 22 3899999999
Q ss_pred CCCCCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Q 028237 124 AHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~~v~~~~ 160 (211)
.+... .+..+...+..+ ++++.++. .+.+..+++
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 76542 555566666554 56888776 334444443
No 401
>PRK13695 putative NTPase; Provisional
Probab=97.85 E-value=0.0007 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
++|+|.|.+|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00051 Score=56.44 Aligned_cols=142 Identities=19% Similarity=0.161 Sum_probs=75.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCC-----CC-------CCCC-----------CceeEEEEEEEE-------ECCEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRF-----QP-------VHDL-----------TIGVEFGARMIT-------IDNKPIK 56 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~-----~~-------~~~~-----------~~~~~~~~~~~~-------~~~~~~~ 56 (211)
-.|+++|++|+||||++..|.+... .. .+.. ..+.......-. ..-.+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 4799999999999999997764310 00 0000 001111000000 0012356
Q ss_pred EEEEeCCCcchhhh----hhHHhh--cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237 57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (211)
Q Consensus 57 ~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
+.++||+|...... ....+. ...+-.++|++++- ...+..+...+ .. --.-=+|+||.|-..
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f------~~-~~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY------QG-HGIHGCIITKVDEAA---- 340 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh------cC-CCCCEEEEEeeeCCC----
Confidence 78999999554322 122221 22446788899874 44333322222 11 223467799999532
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCH-HHHHH
Q 028237 130 STEEGEQFAKEHGLIFMEASAKTAQNV-EEAFI 161 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~~ 161 (211)
..-.+..+....++|+..++ +|.+| +++..
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~ 371 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE 371 (420)
T ss_pred CccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence 34556677778888866554 55666 34433
No 403
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.83 E-value=1.6e-05 Score=63.40 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=43.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..++++|+|.+++||||+||+|.....-..- ...|.+..-+++..+. .+.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 4689999999999999999999987663222 2236677667776654 6678899993
No 404
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.83 E-value=0.00022 Score=51.52 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+.+.+.|++|...... ....+ ....+.+++|++...... ...+...+.... + ..-+++||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC-
Confidence 35678899999743221 11111 234889999999865432 122223322222 2 35677899997432
Q ss_pred CCCHHHHHHHHHHcCCcEEE
Q 028237 128 AVSTEEGEQFAKEHGLIFME 147 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (211)
.-.+...+...++|+..
T Consensus 155 ---~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 ---GGAALSIRAVTGKPIKF 171 (173)
T ss_pred ---cchhhhhHHHHCcCeEe
Confidence 22233366666777543
No 405
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=1.9e-05 Score=63.08 Aligned_cols=157 Identities=20% Similarity=0.140 Sum_probs=93.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC-----------------CC------------CCCCCceeEEEEEEEEECCEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------QP------------VHDLTIGVEFGARMITIDNKP 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~-----------------~~------------~~~~~~~~~~~~~~~~~~~~~ 54 (211)
...+++.++|+..+||||+-..+....- .. ...+.-+.+...-...++-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 3468999999999999998766532100 00 000111233333333344445
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh---hHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS 130 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~ 130 (211)
.++.+.|+||+..|-........++|..++|+++...+ .|+.-.+.......... .-...|+++||+|-+.. .++
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv-nWs 235 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV-NWS 235 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc-Ccc
Confidence 78899999999999877777788899999998874321 12222122211111111 24668999999996431 122
Q ss_pred -------HHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 028237 131 -------TEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 131 -------~~~~~~~~~~~~------~~~~~~sa~~g~~v~~~~~ 161 (211)
.+.+..|....+ ..++++|..+|.++.+...
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 222334444333 3489999999999887664
No 406
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.75 E-value=0.00022 Score=56.79 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|+|...+|||||+-.|++..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecc
Confidence 5799999999999999997776543
No 407
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.73 E-value=0.00016 Score=50.46 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=61.5
Q ss_pred EEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC
Q 028237 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 90 (211)
Q Consensus 11 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (211)
.-|..|+|||++--.+...-. .......-.+.. .......+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 456889999998766543211 011111001100 00011127789999998543 33456788999999999987
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237 91 RETFNHLASWLEDARQHANANMTIMLIGNKCDL 123 (211)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 123 (211)
..+...+...++.+.... ...++.+++|+.+.
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 444555455555554332 35678899999975
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.73 E-value=5.6e-05 Score=54.44 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=64.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT-AGQ--------------------- 65 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 65 (211)
+|.|-|.+|+|||||+++++..-..... +..| +....+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG-GEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC-ccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998754211111 1111 11122223333344444454 221
Q ss_pred -chhhh----hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC-CCCCCCCCCHHHHHHHHH
Q 028237 66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC-DLAHRRAVSTEEGEQFAK 139 (211)
Q Consensus 66 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~ 139 (211)
+.|.. .....+..+| ++|+|=-.+..+ ....|.+.+....+.++|++.++.+. +. .-+.++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 11111 1112123334 777772211100 01223444444444578888888766 32 22455666
Q ss_pred HcCCcEEEEecCCCCCHH
Q 028237 140 EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 140 ~~~~~~~~~sa~~g~~v~ 157 (211)
..++.+++++..+...+.
T Consensus 147 ~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDALP 164 (168)
T ss_dssp TTTSEEEE--TTTCCCHH
T ss_pred CCCcEEEEeChhHHhhHh
Confidence 778889998887766553
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.00085 Score=55.48 Aligned_cols=90 Identities=20% Similarity=0.132 Sum_probs=51.2
Q ss_pred EEEEEEEeCCCcchhh----hhhHHhhc---CCcEEEEEEECCCH-hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 54 PIKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
.+.+.|+||+|..... .....++. ...-+++|++.+-. ..+.. .+..+ ...+ +.-+++||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~---~~~~f---~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD---IYKHF---SRLP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH---HHHHh---CCCC-CCEEEEecccccc
Confidence 3678999999965432 12223333 23466788887542 22222 22222 1112 2368899999632
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
..-.+..+....++|+..++ +|.+|
T Consensus 372 ----~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ----SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ----cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 34457777888888866554 45554
No 410
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.72 E-value=0.00033 Score=46.09 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=50.6
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 9 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
|.+.| ..|+||||+...+...-.. . +... ..+..+. .+.+.++|+|+..... ....+..+|.+|++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~v--l~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRV--LLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcE--EEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 5689999998776543221 1 1111 1122222 2678899999865433 3367778999999998
Q ss_pred CCCHhhHHHHHHHHH
Q 028237 88 ITRRETFNHLASWLE 102 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~ 102 (211)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 86 445555555554
No 411
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00016 Score=59.53 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=72.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCC------------CCCCCCC--CceeEEEEEEEEE----------------CCEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------FQPVHDL--TIGVEFGARMITI----------------DNKP 54 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~------------~~~~~~~--~~~~~~~~~~~~~----------------~~~~ 54 (211)
..-++-|+.+...|||||...|.... |...... .-++++.+.-+.. ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 34578899999999999999985431 1111111 1122222111111 2235
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 123 (211)
+.++++|.||+-.|.+.....++-.|+.+.|+|..+.--.+.-..+.+-+. ..+..++++||+|.
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence 789999999999999999999999999999999876321111111222222 24455788999995
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.68 E-value=0.00019 Score=41.35 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=28.6
Q ss_pred cCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237 77 RGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCD 122 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 122 (211)
+-.++++|++|++... +.+.-..++.+++.... ++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 4467999999998744 45555566777766553 899999999998
No 413
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.68 E-value=0.00088 Score=49.52 Aligned_cols=89 Identities=21% Similarity=0.135 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
+.+.++||+|...... ....+ ....+-+++|++++.... .+.+...+ ... + +--+++||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~--~-~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF--G-IDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS--S-TCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc--c-CceEEEEeecCCC--
Confidence 5688999999654332 11122 125678999999876442 22222222 211 1 2356699999632
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
..-.+..+....+.|+-.++ +|.+|
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred --CcccceeHHHHhCCCeEEEE--CCCCh
Confidence 34556777788888866555 44444
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00018 Score=59.93 Aligned_cols=93 Identities=20% Similarity=0.138 Sum_probs=51.3
Q ss_pred EEEEEEeCCCcchhhh---hhHHhhcC---CcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
..+.++||+|...... .....+.. ..-.++|+|.+- ...+..+ +..+.. ....-+|+||.|-.
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~-~~~~g~IlTKlDet--- 404 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRG-PGLAGCILTKLDEA--- 404 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhcc-CCCCEEEEeCCCCc---
Confidence 4578999999543321 11112221 233678888864 3322222 222222 22446778999953
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCH-HHHH
Q 028237 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAF 160 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~ 160 (211)
...-.+..+....++|+..++ +|.+| +++.
T Consensus 405 -~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 405 -ASLGGALDVVIRYKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred -ccchHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence 335556777888888866554 56666 4443
No 415
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00048 Score=60.33 Aligned_cols=98 Identities=20% Similarity=0.104 Sum_probs=53.9
Q ss_pred EEEEEEEeCCCcchhh----hhhHHh--hcCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 54 PIKLQIWDTAGQESFR----SITRSY--YRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+.+.|+||+|..... ...... ....+-.++|+|.+. .+.+.++...+... .. --+-=+|+||.|-..
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~-~~i~glIlTKLDEt~- 337 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AG-EDVDGCIITKLDEAT- 337 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---cc-CCCCEEEEeccCCCC-
Confidence 3568999999943322 111111 223557889999874 33333333222221 10 023467899999632
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCH-HHHHH
Q 028237 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFI 161 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~~ 161 (211)
..=.+..+....++|+..++ +|.+| +++..
T Consensus 338 ---~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 338 ---HLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred ---CccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence 34445667777788866554 56666 44433
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.58 E-value=0.00074 Score=43.33 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=45.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-hHHhhcCCcEEEEEEE
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD 87 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 87 (211)
+++.|..|+||||+...+...-... +. +...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998876542211 11 112222 6779999986543321 2456678899999998
Q ss_pred CCCHh
Q 028237 88 ITRRE 92 (211)
Q Consensus 88 ~~~~~ 92 (211)
.....
T Consensus 68 ~~~~~ 72 (99)
T cd01983 68 PEALA 72 (99)
T ss_pred Cchhh
Confidence 87543
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.58 E-value=0.0012 Score=49.43 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=38.5
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 144 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
...+.+|.+|.|+|++- .++..+....+..... + .++.+|+||.|-. .......+...+.+
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el---g~k~i~~V~NKv~e~------e~~~~~~~~~~~~~ 212 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL---GIKRIFVVLNKVDEE------EELLRELAEELGLE 212 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh---CCceEEEEEeeccch------hHHHHhhhhccCCe
Confidence 34678999999999984 3444444432222222 5 8999999999942 34445555555554
No 418
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.54 E-value=0.00058 Score=56.51 Aligned_cols=85 Identities=18% Similarity=0.047 Sum_probs=46.9
Q ss_pred EEEEEEeCCCcchhhhh----hHH--hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRSI----TRS--YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.|+||+|....... ... ....+|.+++|+|++... .+........... ...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence 47899999996544321 111 134678999999987642 1112222221111 12467789999632
Q ss_pred CCHHHHHHHHHHcCCcEEEEe
Q 028237 129 VSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (211)
..=.+..+....+.|+..++
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEe
Confidence 12334555666677755444
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.54 E-value=0.0023 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999998754
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=97.53 E-value=0.00055 Score=56.54 Aligned_cols=86 Identities=16% Similarity=0.045 Sum_probs=47.0
Q ss_pred EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+.+.|+||+|...... ....+ .-..+.+++|+|..... ++......+.... + ..-+|+||.|-...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~r- 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDAR- 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc-
Confidence 36789999999543211 11111 22567889999986532 2222222222211 1 24577899996322
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 028237 128 AVSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (211)
.-.+.......++|+..+.
T Consensus 256 ---gG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 2225566677778855544
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.50 E-value=0.0023 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00057 Score=55.20 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCcchhhh----hhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+.+.|+||+|...... ....+.. ..+.+++|+++... ..++...+ ..+.. --+--+|+||.|-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~---~~f~~-l~i~glI~TKLDET--- 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTIL---PKLAE-IPIDGFIITKMDET--- 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHH---HhcCc-CCCCEEEEEcccCC---
Confidence 36789999999743322 2222332 34566777766322 12222222 22221 22346779999963
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
...-.+..++...+.|+..++ +|.+|.
T Consensus 356 -~~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 356 -TRIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred -CCccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 234445667777888865554 344444
No 423
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.46 E-value=0.0031 Score=50.73 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=53.7
Q ss_pred EEEEEEeCCCcchhhhhhHHhh-------cCCcEEEEEEECCCHh---------hHH-------------HHHHH-HHHH
Q 028237 55 IKLQIWDTAGQESFRSITRSYY-------RGAAGALLVYDITRRE---------TFN-------------HLASW-LEDA 104 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~---------~~~-------------~~~~~-~~~l 104 (211)
....+.++.|...-..+...+. -..|++|.|+|+.+-. ... .+..+ ..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4566788888766555444431 2457899999986421 100 01111 2222
Q ss_pred HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cC-C-cEEEEecCCCCCHHHHHHH
Q 028237 105 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HG-L-IFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~-~~~~~sa~~g~~v~~~~~~ 162 (211)
...-+|++||+|+.+.. ..+.+++..+. ++ . +++++. ........+|..
T Consensus 173 ------~~AD~IvlnK~Dl~~~~--~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 173 ------ACADLVILNKADLLDAA--GLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred ------HhCCEEEEeccccCCHH--HHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 12248899999986532 23445555554 33 2 466554 344566666653
No 424
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.45 E-value=0.0094 Score=42.63 Aligned_cols=139 Identities=6% Similarity=0.040 Sum_probs=91.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEe-CCCcchhhhhhHHhhcCCcEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD-TAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.....|+++|..+.++..|...+...... ... +++.-- .|--.+.... -...|.+
T Consensus 13 ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l------------~Vh~a~sLPLp~e~~~l----RprIDlI 68 (176)
T PF11111_consen 13 LNTATILLVGTEEALLQQLAEAMLEEDKE--------FKL------------KVHLAKSLPLPSENNNL----RPRIDLI 68 (176)
T ss_pred cceeEEEEecccHHHHHHHHHHHHhhccc--------eeE------------EEEEeccCCCcccccCC----CceeEEE
Confidence 34678999999999999999999853110 111 111111 1111111111 2346999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
+|++|+....+++.++.-+..+....-. -.+.++.+-....+.-.+...++.+++..+++|++...-....+...+-+.
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqR 147 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQR 147 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHH
Confidence 9999999999998888776666333222 335666666666565667899999999999999998887776655555555
Q ss_pred HHHHH
Q 028237 163 TAATI 167 (211)
Q Consensus 163 l~~~~ 167 (211)
|.+.+
T Consensus 148 LL~~l 152 (176)
T PF11111_consen 148 LLRML 152 (176)
T ss_pred HHHHH
Confidence 54443
No 425
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.45 E-value=0.00029 Score=54.70 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=38.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC----CCCCCCceeEEEEEE-EEECCEEEEEEEEeCCC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARM-ITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G 64 (211)
..+++.|+|-||+|||||||.+...... ...-+..|.+....+ +.+... -.+.+.||||
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPG 205 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPG 205 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCC
Confidence 4678999999999999999997543221 222222344444444 444432 3578999999
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.44 E-value=0.00084 Score=44.47 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=57.4
Q ss_pred cCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh
Q 028237 13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92 (211)
Q Consensus 13 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 92 (211)
+..|+||||+...|...-....... .......... ...+.+.|+|+..... ....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~-----~~l~d~d~~~-~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRR-----VLLVDLDLQF-GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCc-----EEEEECCCCC-CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence 4578999998777643211110111 1011111111 1178899999865433 345678889999999877 44
Q ss_pred hHHHHHHHHHHHHHhcCC-CCcEEEEEec
Q 028237 93 TFNHLASWLEDARQHANA-NMTIMLIGNK 120 (211)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~-~~p~ivv~nK 120 (211)
+...+..+++.+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 566666666666554433 4567777774
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.44 E-value=0.001 Score=54.94 Aligned_cols=86 Identities=15% Similarity=0.032 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+.+.|.||+|...... ....+ .-..+.+++|+|..... .+......+.... ...-+|+||.|-...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~- 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR- 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc-
Confidence 35689999999543321 11111 23577889999987533 2233333332221 234677999995321
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 028237 128 AVSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (211)
.-.+..+....++|+..+.
T Consensus 255 ---~G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 255 ---GGAALSVRSVTGKPIKFIG 273 (428)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 2236666777788855544
No 428
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.40 E-value=0.00015 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 429
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00083 Score=53.79 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred EEEEEEEEeCCCcch-----hhhhhHH-hhcCCcEEEEEEECCCHhhHHHH
Q 028237 53 KPIKLQIWDTAGQES-----FRSITRS-YYRGAAGALLVYDITRRETFNHL 97 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~-----~~~~~~~-~~~~~d~~i~v~d~~~~~~~~~~ 97 (211)
..+.+.|.||.|... |..+..- -.-..|-+|||+|.+-.+..+..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 358899999999432 2222221 13458899999999875554433
No 430
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00016 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
+||+|+|++||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999866
No 431
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00023 Score=53.07 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
|..+...-|+|+|++|||||||++.+.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 66777888999999999999999999864
No 432
>PRK08118 topology modulation protein; Reviewed
Probab=97.35 E-value=0.00018 Score=51.80 Aligned_cols=23 Identities=48% Similarity=0.626 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
No 433
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.0021 Score=44.25 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
-.++|.|++|+|||+|++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999986643
No 434
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.34 E-value=0.0032 Score=45.72 Aligned_cols=86 Identities=26% Similarity=0.283 Sum_probs=60.9
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 132 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
..+.+.++|+|+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|+.|... ....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 4578999999975432 33456788999999999884 3555566666655543 567899999999643 2355
Q ss_pred HHHHHHHHcCCcEEE
Q 028237 133 EGEQFAKEHGLIFME 147 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~ 147 (211)
+.+++.++.+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.34 E-value=0.00017 Score=52.16 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.+|+|+|.+|||||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 436
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.34 E-value=0.00058 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~ 27 (211)
+-+.|+|+.||||||+++.+.
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred eeEEEEccCCCCcchHHHHHH
Confidence 568899999999999999874
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.33 E-value=0.00019 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|+++|++|||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.014 Score=47.77 Aligned_cols=107 Identities=17% Similarity=0.046 Sum_probs=58.0
Q ss_pred EEEEEEEeCCCcchhhh----hhHHhhcC--Cc-EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS----ITRSYYRG--AA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+.+.++||+|...... ....++.. .+ -.++|+|++... ..+.. .+..+.. -.+-=+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~---~~~~~~~-~~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKE---IFHQFSP-FSYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHH---HHHHhcC-CCCCEEEEEeccCCC-
Confidence 46789999999654321 12223332 23 588999987642 12222 2223321 124567899999532
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCH-HHHHHHHHHHHHHHHh
Q 028237 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKIQ 172 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~~~l~~~~~~~~~ 172 (211)
..-.+..++...+.|+..++ +|.+| +++...=.+.+.+.+.
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~l~ 368 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKKIN 368 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHhc
Confidence 34445666777788855444 56666 4444433444444443
No 439
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.31 E-value=0.0013 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-|++.|..|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998763
No 440
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0024 Score=52.41 Aligned_cols=132 Identities=21% Similarity=0.156 Sum_probs=68.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC-CCC---------CCC------------CCceeEEEEEE-E-----EECCEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR-FQP---------VHD------------LTIGVEFGARM-I-----TIDNKPIKLQ 58 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~-~~~---------~~~------------~~~~~~~~~~~-~-----~~~~~~~~~~ 58 (211)
.-++|+|++||||||++..|.... ... ... ...+....... . .+....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 358899999999999999886421 000 000 00111111000 0 0011245778
Q ss_pred EEeCCCcchhh----hhhHHhhc-----CCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 59 IWDTAGQESFR----SITRSYYR-----GAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 59 i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
++||+|..... ..+..++. ..+-.++|+|++... ....+...+ .. --+-=+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f------~~-~~~~glIlTKLDEt~--- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY------ES-LNYRRILLTKLDEAD--- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh------cC-CCCCEEEEEcccCCC---
Confidence 99999964221 11222222 234678899987543 333322222 11 123467799999532
Q ss_pred CCHHHHHHHHHHcCCcEEEEe
Q 028237 129 VSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (211)
..-.+..+....+.|+..++
T Consensus 374 -~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 23445666777788854444
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.29 E-value=0.00028 Score=41.63 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
..+|.|+.|+|||||+..+..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999887543
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00024 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999998763
No 443
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.29 E-value=0.013 Score=47.58 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=67.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCC---CCceeEEE-----------------EEEEEECC----------EEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD---LTIGVEFG-----------------ARMITIDN----------KPIKL 57 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~-----------------~~~~~~~~----------~~~~~ 57 (211)
-|+++|+.|+||||-+-.|.....-.... ..++++.+ ...+.... ..+.+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 58999999999999887775443301111 11111111 00000000 23678
Q ss_pred EEEeCCCcchhhh----hhHHhhcCC--cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH
Q 028237 58 QIWDTAGQESFRS----ITRSYYRGA--AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 131 (211)
Q Consensus 58 ~i~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~ 131 (211)
.++||.|...++. ....++..+ .-+.+|++++... +.+... +..++..+. --+++||.|-.. ..
T Consensus 285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei---~~~f~~~~i-~~~I~TKlDET~----s~ 354 (407)
T COG1419 285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEI---IKQFSLFPI-DGLIFTKLDETT----SL 354 (407)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHH---HHHhccCCc-ceeEEEcccccC----ch
Confidence 9999999765543 233333333 3566677776533 222222 233332122 246689999532 34
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028237 132 EEGEQFAKEHGLIFMEA 148 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ 148 (211)
-.+..+..+.+.|+-.+
T Consensus 355 G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 355 GNLFSLMYETRLPVSYV 371 (407)
T ss_pred hHHHHHHHHhCCCeEEE
Confidence 44556666666664333
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.25 E-value=0.00032 Score=50.58 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=24.7
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
|+.....-++|+|.+|||||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 55556667999999999999999999865
No 445
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.25 E-value=0.0023 Score=54.25 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
+++-||+||||||.++.|...
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999998764
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00032 Score=52.98 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|.|+|++|||||||+|.+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998764
No 447
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00036 Score=51.64 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=25.9
Q ss_pred HHHHHHHcCCcEE--EEecCCCCCHHHHHHHHHHHHHHH
Q 028237 134 GEQFAKEHGLIFM--EASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 134 ~~~~~~~~~~~~~--~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
++.++-+..+-+| +|||.+.+-+.|+++.+.+...+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 3444444444455 599999999999999888776554
No 448
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0049 Score=47.86 Aligned_cols=132 Identities=17% Similarity=0.075 Sum_probs=69.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCC----------C-----------CCCCceeEEEEEEE--E-------E-CCEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----------V-----------HDLTIGVEFGARMI--T-------I-DNKPI 55 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~----------~-----------~~~~~~~~~~~~~~--~-------~-~~~~~ 55 (211)
-+++++|++|+||||++..+...-... . +....+..+....- . . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 589999999999999998775431100 0 00001111111000 0 0 01146
Q ss_pred EEEEEeCCCcchhhh----hhHHhh--cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 56 KLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
.+.++||+|...... .+..++ ...+-.++|++++. ...... ++ ..+.. -.+-=+++||.|-..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~---~~---~~f~~-~~~~~~I~TKlDet~--- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE---II---TNFKD-IHIDGIVFTKFDETA--- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH---HH---HHhCC-CCCCEEEEEeecCCC---
Confidence 789999999653221 122222 24567899999863 332222 22 22222 233467799999643
Q ss_pred CCHHHHHHHHHHcCCcEEEEe
Q 028237 129 VSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (211)
..-.+..++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23445666777788855444
No 449
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.21 E-value=0.012 Score=42.41 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=52.0
Q ss_pred EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH
Q 028237 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 135 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 135 (211)
.+.++|+|+..... ....+..+|.+|++++.... +...+..+++.+.... .....+++|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 68899999854332 44557889999999988743 4444555555554421 2356789999986432 1222234
Q ss_pred HHHHHcCCcEE
Q 028237 136 QFAKEHGLIFM 146 (211)
Q Consensus 136 ~~~~~~~~~~~ 146 (211)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555677654
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.20 E-value=0.00029 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-|+|+|++|||||||+|.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998755
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.19 E-value=0.0004 Score=42.18 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998855
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.18 E-value=0.00024 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 453
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.16 E-value=0.00033 Score=53.61 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
++|+|++|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999763
No 454
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.16 E-value=0.001 Score=48.08 Aligned_cols=44 Identities=25% Similarity=0.161 Sum_probs=28.1
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
|++++|+|+.++.+... ..+...+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643221 12222211 1223689999999999954
No 455
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.16 E-value=0.00037 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998653
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.12 E-value=0.00053 Score=47.69 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 457
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.11 E-value=0.0027 Score=44.29 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=39.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEE-ECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT-IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
-|++-|.-|||||||.+.+...--......+++.+. ...+. -+..-+++.+|=....++...+...-+...+++.+|
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl-v~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~~gv~lI 104 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL-VEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDGDGICLI 104 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee-ehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCCCcEEEE
Confidence 478899999999999999876544332222222322 11121 123345555555544444333333333333444444
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.10 E-value=0.00037 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3556889999999999999999754
No 459
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.09 E-value=0.0035 Score=46.44 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~ 30 (211)
|+|+|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887653
No 460
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.09 E-value=0.0069 Score=50.85 Aligned_cols=87 Identities=8% Similarity=0.013 Sum_probs=45.5
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
.+|+|=|+-+....+....+...++.+.. ...|+|++++-+-..........-...+..+.++..+.++.....-+...
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~ 275 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF 275 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence 46788787665444333333333333332 47899999987765322111111123333555666666666655445555
Q ss_pred HHHHHHHH
Q 028237 160 FIKTAATI 167 (211)
Q Consensus 160 ~~~l~~~~ 167 (211)
+..++...
T Consensus 276 L~ric~~e 283 (634)
T KOG1970|consen 276 LKRICRIE 283 (634)
T ss_pred HHHHHHHh
Confidence 55554433
No 461
>PRK06217 hypothetical protein; Validated
Probab=97.08 E-value=0.0005 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 462
>PRK10646 ADP-binding protein; Provisional
Probab=97.07 E-value=0.0051 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-|++-|.-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999997653
No 463
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.07 E-value=0.00054 Score=51.89 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
|..-..++|+|+|++||||||+.+.|...
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45556789999999999999999998543
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=97.06 E-value=0.0006 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
-+++|+|.+|+|||||+|.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3689999999999999999987533
No 465
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00064 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~ 31 (211)
-+|+||+|||||||.+.+.+.+-
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 47899999999999999998743
No 466
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.06 E-value=0.00053 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~ 27 (211)
-.++|+|++|||||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999886
No 467
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.06 E-value=0.0086 Score=45.08 Aligned_cols=103 Identities=8% Similarity=0.076 Sum_probs=63.4
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 131 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~ 131 (211)
.+.+.|.|+.|..... ....+..+|.+|+=+-.+.-+. ......|+..+.+.....+|+-|+.|++.... .....
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence 3678999999866443 4556677899888776664332 22233455555444456899999999997421 11112
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 132 EEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
..+..+.+ ++|++.+...+..-..++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22233332 58888888777666666555
No 468
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00098 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~ 31 (211)
+.++|++||||||+++.+.+=..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999986533
No 469
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.04 E-value=0.00062 Score=47.50 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|+.|+|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 470
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.04 E-value=0.0019 Score=46.10 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.+++.|++|||||||++.+..-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5899999999999999998743
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.02 E-value=0.0006 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 472
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.00077 Score=50.77 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
+|+|+|++|||||||++.+.+-..
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccC
Confidence 799999999999999999887644
No 473
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00055 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 474
>PRK03839 putative kinase; Provisional
Probab=97.00 E-value=0.00059 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.00 E-value=0.00064 Score=44.91 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028237 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~ 27 (211)
.++|+|++|||||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999976
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.99 E-value=0.00064 Score=46.24 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 477
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00079 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~ 30 (211)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999997653
No 478
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00035 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
..-++|.|++|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999998765
No 479
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.00094 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 480
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.96 E-value=0.00087 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.96 E-value=0.00093 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998763
No 482
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.96 E-value=0.0059 Score=50.82 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=16.0
Q ss_pred eEEEEcCCCCCHHHHHH
Q 028237 8 KYIIIGDTGVGKSCLLL 24 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~ 24 (211)
-|+|+|++|||||||++
T Consensus 34 iv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 34 LLFLCGSSGDGKSEILA 50 (504)
T ss_pred EEEEECCCCCCHHHHHh
Confidence 48999999999999999
No 483
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.95 E-value=0.00092 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 484
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.95 E-value=0.00096 Score=49.79 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.....|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998764
No 485
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.94 E-value=0.0018 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-|++-|+-|||||||++.+...-
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999987643
No 486
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.94 E-value=0.014 Score=43.84 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~ 27 (211)
-.++|.|++++|||||++.+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 468999999999999999976
No 487
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.94 E-value=0.00092 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
=.++|+|++|||||||++.+.+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999764
No 488
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.94 E-value=0.0087 Score=46.42 Aligned_cols=84 Identities=25% Similarity=0.277 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
-|+|.|++||||||+++.++....... ......+ ...++.+.+ ..++.+....| ..+.......++.--=+|++-.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~-~~iitiE-dp~E~~~~~-~~q~~v~~~~~-~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPE-KNIITVE-DPVEYQIPG-INQVQVNEKAG-LTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCC-CeEEEEC-CCceecCCC-ceEEEeCCcCC-cCHHHHHHHHhccCCCEEEecc
Confidence 489999999999999999876532211 0000000 011111222 11222211111 2355555566665555666677
Q ss_pred CCCHhhHH
Q 028237 88 ITRRETFN 95 (211)
Q Consensus 88 ~~~~~~~~ 95 (211)
+.++++..
T Consensus 158 iR~~e~a~ 165 (264)
T cd01129 158 IRDAETAE 165 (264)
T ss_pred CCCHHHHH
Confidence 77776544
No 489
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.93 E-value=0.00084 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|+|.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 490
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.93 E-value=0.00089 Score=45.80 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~ 33 (211)
-.++|+|++|+||||+++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 368999999999999999998765443
No 491
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.93 E-value=0.00078 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..++++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998754
No 492
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.92 E-value=0.0087 Score=49.53 Aligned_cols=51 Identities=31% Similarity=0.322 Sum_probs=32.4
Q ss_pred hhhHHhhcCCcEEEEEEE-CCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237 70 SITRSYYRGAAGALLVYD-ITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d-~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 122 (211)
++.+..|++++.+|| | ++.--+..++..++..+......++.+|++-.|.+
T Consensus 150 EIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 150 EILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 355566777776654 3 23223445566677777666667888888887765
No 493
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.92 E-value=0.00078 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 494
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00065 Score=50.25 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 028237 9 YIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~ 28 (211)
.+++|++|||||||++.|-.
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 58999999999999988863
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0011 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 496
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0017 Score=52.44 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=50.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEEC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (211)
|-++|.+|||||||+.-|++-..+..- .+.++++++ |--..++|+.+....+.+-+.+=-+...
T Consensus 352 vFliG~NGsGKST~~~LLtGL~~PqsG-----------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLYQPQSG-----------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCCC-----------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 678999999999999999876443321 245566543 4344567777666665544433333344
Q ss_pred CCHhhHHHHHHHHHHHH
Q 028237 89 TRRETFNHLASWLEDAR 105 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ 105 (211)
....+.+.+..|++.+.
T Consensus 416 e~~as~q~i~~~LqrLe 432 (546)
T COG4615 416 EGKASPQLIEKWLQRLE 432 (546)
T ss_pred ccCCChHHHHHHHHHHH
Confidence 44456667777777663
No 497
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0041 Score=44.96 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.6
Q ss_pred HHHHHHHcCCcEE--EEecCCCCCHHHHHHHHHHHHHHH
Q 028237 134 GEQFAKEHGLIFM--EASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 134 ~~~~~~~~~~~~~--~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
.+.++-+..+-+| ++||.+.+=+-|++..|.+...+.
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 3444444445455 599999999999999888776654
No 498
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.91 E-value=0.0011 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 499
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.91 E-value=0.0008 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 500
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.91 E-value=0.00033 Score=56.14 Aligned_cols=82 Identities=22% Similarity=0.206 Sum_probs=47.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--hhhhhHHhhcCCcEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--FRSITRSYYRGAAGA 82 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~ 82 (211)
..|-|+++|.|++||||+||.|-....-...... |.+..=+.+++ -..+-++|+||.-- .+......+ -++
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---kGv 378 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---KGV 378 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCC-CcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---hce
Confidence 3578999999999999999999877654332222 22221111111 23567899999421 112122222 255
Q ss_pred EEEEECCCHhh
Q 028237 83 LLVYDITRRET 93 (211)
Q Consensus 83 i~v~d~~~~~~ 93 (211)
+=|=.+.+|+.
T Consensus 379 VRVenv~~pe~ 389 (572)
T KOG2423|consen 379 VRVENVKNPED 389 (572)
T ss_pred eeeeecCCHHH
Confidence 56666666553
Done!