Query 028237
Match_columns 211
No_of_seqs 120 out of 1848
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.2E-43 7.5E-48 263.7 19.8 167 5-171 12-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-38 5.3E-43 236.0 23.1 173 3-175 5-177 (206)
3 3cpj_B GTP-binding protein YPT 100.0 1.1E-37 3.9E-42 234.2 19.7 178 1-178 8-185 (223)
4 3tkl_A RAS-related protein RAB 100.0 1.5E-35 5E-40 218.0 24.7 173 3-175 13-185 (196)
5 1vg8_A RAS-related protein RAB 100.0 3.9E-36 1.3E-40 223.0 19.0 170 3-173 5-179 (207)
6 2bov_A RAla, RAS-related prote 100.0 5E-35 1.7E-39 216.7 23.2 167 5-172 13-180 (206)
7 2ew1_A RAS-related protein RAB 100.0 7E-35 2.4E-39 215.8 23.7 171 3-173 23-193 (201)
8 2bme_A RAB4A, RAS-related prot 100.0 1E-34 3.5E-39 211.8 24.3 174 3-176 7-180 (186)
9 2o52_A RAS-related protein RAB 100.0 3.6E-35 1.2E-39 217.1 21.8 176 1-176 20-195 (200)
10 2hup_A RAS-related protein RAB 100.0 5.1E-35 1.7E-39 216.5 22.5 171 2-172 25-196 (201)
11 2fu5_C RAS-related protein RAB 100.0 1.4E-35 4.8E-40 216.0 18.4 172 3-174 5-176 (183)
12 2a5j_A RAS-related protein RAB 100.0 1.1E-34 3.6E-39 213.0 23.2 172 3-174 18-189 (191)
13 1zbd_A Rabphilin-3A; G protein 100.0 1.8E-34 6.1E-39 213.6 24.5 174 1-174 3-176 (203)
14 2gf9_A RAS-related protein RAB 100.0 1.9E-34 6.4E-39 211.2 23.6 171 2-172 18-188 (189)
15 2oil_A CATX-8, RAS-related pro 100.0 2.4E-34 8.4E-39 211.2 23.9 171 2-172 21-191 (193)
16 1z0f_A RAB14, member RAS oncog 100.0 1.9E-34 6.4E-39 208.8 22.6 168 2-169 11-178 (179)
17 1z08_A RAS-related protein RAB 100.0 1.4E-34 4.7E-39 208.0 19.9 167 2-168 2-168 (170)
18 3dz8_A RAS-related protein RAB 100.0 2.4E-35 8.3E-40 216.4 15.7 171 2-172 19-189 (191)
19 2efe_B Small GTP-binding prote 100.0 6.6E-34 2.3E-38 206.5 22.9 168 3-170 9-176 (181)
20 3tw8_B RAS-related protein RAB 100.0 6.5E-34 2.2E-38 206.4 22.6 170 3-173 6-175 (181)
21 3t5g_A GTP-binding protein RHE 100.0 3.4E-34 1.2E-38 208.2 21.0 170 1-171 1-171 (181)
22 1r2q_A RAS-related protein RAB 100.0 8.4E-34 2.9E-38 203.7 22.7 165 3-167 3-167 (170)
23 3clv_A RAB5 protein, putative; 100.0 1.2E-33 3.9E-38 208.9 23.8 169 1-172 2-207 (208)
24 1z0j_A RAB-22, RAS-related pro 100.0 1.4E-33 4.8E-38 202.6 23.5 166 2-167 2-167 (170)
25 1g16_A RAS-related protein SEC 100.0 3.5E-34 1.2E-38 205.8 19.9 167 4-171 1-167 (170)
26 2g6b_A RAS-related protein RAB 100.0 1.2E-33 4E-38 205.1 22.7 168 3-170 7-175 (180)
27 2fg5_A RAB-22B, RAS-related pr 100.0 3.9E-34 1.3E-38 210.1 20.4 168 3-170 20-187 (192)
28 2f7s_A C25KG, RAS-related prot 100.0 1.8E-34 6.1E-39 215.7 18.4 173 2-174 21-204 (217)
29 2il1_A RAB12; G-protein, GDP, 100.0 5E-34 1.7E-38 209.6 20.4 168 3-170 23-191 (192)
30 3bc1_A RAS-related protein RAB 100.0 1.9E-33 6.5E-38 206.1 23.4 172 3-174 8-190 (195)
31 1z2a_A RAS-related protein RAB 100.0 6.4E-34 2.2E-38 204.0 20.4 166 3-169 2-167 (168)
32 3cph_A RAS-related protein SEC 100.0 1.7E-33 6E-38 209.6 23.2 172 3-175 17-188 (213)
33 1ek0_A Protein (GTP-binding pr 100.0 1.9E-33 6.6E-38 201.8 22.2 162 6-167 3-167 (170)
34 3kkq_A RAS-related protein M-R 100.0 2.6E-33 8.8E-38 203.9 22.8 165 4-169 16-182 (183)
35 2nzj_A GTP-binding protein REM 100.0 2.6E-33 8.7E-38 202.3 22.0 168 4-172 2-172 (175)
36 2p5s_A RAS and EF-hand domain 100.0 6.5E-34 2.2E-38 210.1 19.1 168 2-169 24-197 (199)
37 4dsu_A GTPase KRAS, isoform 2B 100.0 6.1E-33 2.1E-37 202.7 23.5 167 5-173 3-170 (189)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 7E-33 2.4E-37 200.4 23.5 166 3-169 4-174 (177)
39 2gf0_A GTP-binding protein DI- 100.0 7.8E-34 2.7E-38 209.2 18.6 164 4-169 6-171 (199)
40 2j0v_A RAC-like GTP-binding pr 100.0 3.4E-34 1.1E-38 213.5 16.2 169 1-171 4-182 (212)
41 2fn4_A P23, RAS-related protei 100.0 7.2E-33 2.4E-37 200.8 22.6 168 4-172 7-175 (181)
42 1z06_A RAS-related protein RAB 100.0 4.1E-33 1.4E-37 204.1 21.4 166 4-169 18-188 (189)
43 3c5c_A RAS-like protein 12; GD 100.0 2.8E-33 9.6E-38 204.8 20.2 165 3-169 18-186 (187)
44 2y8e_A RAB-protein 6, GH09086P 100.0 3.7E-33 1.3E-37 202.0 20.6 164 5-168 13-176 (179)
45 3q85_A GTP-binding protein REM 100.0 2.4E-33 8E-38 201.5 19.4 165 6-170 2-168 (169)
46 3oes_A GTPase rhebl1; small GT 100.0 9.9E-34 3.4E-38 209.4 17.5 171 1-172 19-190 (201)
47 3cbq_A GTP-binding protein REM 100.0 2.3E-33 7.9E-38 206.7 19.4 168 3-170 20-189 (195)
48 2hxs_A RAB-26, RAS-related pro 100.0 1.5E-33 5.3E-38 204.1 17.7 167 3-169 3-173 (178)
49 2atv_A RERG, RAS-like estrogen 100.0 1.1E-32 3.9E-37 202.9 22.0 170 1-172 23-194 (196)
50 3reg_A RHO-like small GTPase; 100.0 1.1E-32 3.8E-37 202.6 21.5 166 3-170 20-189 (194)
51 1u8z_A RAS-related protein RAL 100.0 1.3E-32 4.6E-37 196.9 21.3 163 6-169 4-167 (168)
52 2a9k_A RAS-related protein RAL 100.0 2.8E-32 9.5E-37 198.7 23.3 167 5-172 17-184 (187)
53 1ky3_A GTP-binding protein YPT 100.0 4.8E-33 1.6E-37 202.0 19.1 169 3-171 5-180 (182)
54 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-32 8.6E-37 197.8 22.1 166 1-173 2-173 (178)
55 1kao_A RAP2A; GTP-binding prot 100.0 1.8E-32 6E-37 196.1 20.9 163 6-169 3-166 (167)
56 2yc2_C IFT27, small RAB-relate 100.0 1.6E-33 5.6E-38 208.8 16.1 172 2-173 16-196 (208)
57 1c1y_A RAS-related protein RAP 100.0 1.6E-32 5.4E-37 196.6 20.7 162 6-168 3-166 (167)
58 1x3s_A RAS-related protein RAB 100.0 2.7E-32 9.3E-37 200.2 22.2 165 5-170 14-179 (195)
59 3q72_A GTP-binding protein RAD 100.0 1.7E-32 5.9E-37 196.4 20.5 163 6-170 2-165 (166)
60 2g3y_A GTP-binding protein GEM 100.0 2E-32 7E-37 203.7 21.1 168 3-171 34-205 (211)
61 3ihw_A Centg3; RAS, centaurin, 100.0 5.2E-32 1.8E-36 197.7 22.6 161 4-171 18-182 (184)
62 2atx_A Small GTP binding prote 100.0 5.6E-32 1.9E-36 198.8 21.9 164 3-168 15-192 (194)
63 2q3h_A RAS homolog gene family 100.0 5.5E-32 1.9E-36 199.8 21.6 168 3-172 17-198 (201)
64 3q3j_B RHO-related GTP-binding 100.0 1.9E-32 6.4E-37 204.6 19.2 167 4-172 25-206 (214)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 6.2E-32 2.1E-36 197.0 19.2 165 3-169 4-183 (184)
66 2f9l_A RAB11B, member RAS onco 100.0 8.9E-31 3E-35 193.3 24.2 173 3-175 2-174 (199)
67 4djt_A GTP-binding nuclear pro 100.0 4.4E-32 1.5E-36 202.9 17.1 172 3-174 8-180 (218)
68 3con_A GTPase NRAS; structural 100.0 7.8E-31 2.7E-35 191.9 23.4 165 5-171 20-185 (190)
69 2ce2_X GTPase HRAS; signaling 100.0 8.1E-31 2.8E-35 187.1 22.9 162 6-169 3-165 (166)
70 2gco_A H9, RHO-related GTP-bin 100.0 4.3E-31 1.5E-35 195.3 22.1 164 4-169 23-200 (201)
71 1gwn_A RHO-related GTP-binding 100.0 1.1E-31 3.6E-36 199.3 18.9 165 3-169 25-204 (205)
72 2erx_A GTP-binding protein DI- 100.0 2.1E-31 7E-36 191.5 19.6 161 6-167 3-165 (172)
73 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.5E-31 1.5E-35 192.3 21.2 162 5-168 4-179 (186)
74 3t1o_A Gliding protein MGLA; G 100.0 3E-32 1E-36 200.3 14.7 168 2-173 10-196 (198)
75 3l0i_B RAS-related protein RAB 100.0 1.2E-34 4.1E-39 214.0 1.2 167 3-169 30-196 (199)
76 2fv8_A H6, RHO-related GTP-bin 100.0 8.4E-31 2.9E-35 194.6 21.9 165 4-170 23-201 (207)
77 3bwd_D RAC-like GTP-binding pr 100.0 2.1E-32 7.1E-37 198.8 12.7 166 1-168 3-180 (182)
78 2j1l_A RHO-related GTP-binding 100.0 5.6E-31 1.9E-35 196.5 20.2 164 5-170 33-210 (214)
79 2cjw_A GTP-binding protein GEM 100.0 1.1E-30 3.7E-35 191.9 21.3 167 4-171 4-174 (192)
80 3gj0_A GTP-binding nuclear pro 100.0 1.6E-31 5.3E-36 200.4 14.1 165 3-170 12-176 (221)
81 4gzl_A RAS-related C3 botulinu 100.0 9.9E-31 3.4E-35 193.8 18.0 162 4-167 28-203 (204)
82 1oix_A RAS-related protein RAB 100.0 1.6E-29 5.5E-34 185.5 22.5 165 3-167 26-190 (191)
83 4bas_A ADP-ribosylation factor 100.0 4.5E-31 1.5E-35 194.4 14.0 163 3-171 14-191 (199)
84 1r8s_A ADP-ribosylation factor 100.0 1E-30 3.6E-35 186.7 12.0 157 7-170 1-163 (164)
85 2h57_A ADP-ribosylation factor 100.0 2.6E-29 8.7E-34 184.0 18.3 160 4-169 19-187 (190)
86 1ksh_A ARF-like protein 2; sma 100.0 5E-29 1.7E-33 181.7 19.5 160 4-170 16-181 (186)
87 1zd9_A ADP-ribosylation factor 100.0 1.4E-29 4.7E-34 185.3 16.3 160 4-169 20-185 (188)
88 1m2o_B GTP-binding protein SAR 100.0 2.5E-29 8.7E-34 184.2 17.8 155 5-166 22-189 (190)
89 1upt_A ARL1, ADP-ribosylation 100.0 4.4E-30 1.5E-34 184.5 13.2 158 5-169 6-169 (171)
90 1f6b_A SAR1; gtpases, N-termin 100.0 8.6E-30 2.9E-34 188.0 15.0 155 5-166 24-196 (198)
91 1zj6_A ADP-ribosylation factor 100.0 5.7E-29 2E-33 181.7 16.7 160 4-170 14-179 (187)
92 2b6h_A ADP-ribosylation factor 100.0 3.3E-30 1.1E-34 189.3 9.9 158 4-168 27-190 (192)
93 1fzq_A ADP-ribosylation factor 100.0 6E-29 2.1E-33 180.9 15.6 160 4-170 14-179 (181)
94 2wkq_A NPH1-1, RAS-related C3 100.0 3.8E-28 1.3E-32 192.2 21.2 163 5-169 154-330 (332)
95 2h17_A ADP-ribosylation factor 100.0 5E-29 1.7E-33 181.2 14.0 156 4-166 19-180 (181)
96 2zej_A Dardarin, leucine-rich 100.0 7.1E-30 2.4E-34 186.2 9.3 164 6-170 2-179 (184)
97 2x77_A ADP-ribosylation factor 100.0 7.2E-30 2.5E-34 186.7 9.3 160 4-170 20-185 (189)
98 1moz_A ARL1, ADP-ribosylation 100.0 9.2E-29 3.1E-33 179.7 14.0 160 4-170 16-181 (183)
99 3th5_A RAS-related C3 botulinu 99.9 2.4E-31 8.3E-36 197.0 0.0 162 4-167 28-203 (204)
100 3llu_A RAS-related GTP-binding 100.0 9.5E-29 3.2E-33 182.0 11.8 159 4-167 18-195 (196)
101 2wji_A Ferrous iron transport 100.0 5.7E-28 2E-32 173.1 14.9 153 6-167 3-163 (165)
102 2fh5_B SR-beta, signal recogni 100.0 4.7E-28 1.6E-32 180.4 12.3 159 3-166 4-213 (214)
103 2qu8_A Putative nucleolar GTP- 100.0 5.2E-27 1.8E-31 176.6 18.0 167 4-173 27-209 (228)
104 2lkc_A Translation initiation 100.0 1.1E-27 3.8E-32 173.1 13.0 160 4-172 6-174 (178)
105 3c5h_A Glucocorticoid receptor 99.9 1.1E-28 3.8E-33 188.8 6.4 164 3-168 16-254 (255)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 8E-27 2.7E-31 182.9 14.4 160 5-168 2-180 (307)
107 3o47_A ADP-ribosylation factor 99.9 3.8E-28 1.3E-32 192.1 6.8 158 5-169 164-327 (329)
108 1svi_A GTP-binding protein YSX 99.9 8.1E-27 2.8E-31 171.1 13.1 158 3-167 20-193 (195)
109 3lvq_E ARF-GAP with SH3 domain 99.9 2.3E-27 7.8E-32 197.5 11.2 162 4-172 320-487 (497)
110 2cxx_A Probable GTP-binding pr 99.9 7.2E-27 2.5E-31 170.6 12.0 156 7-171 2-186 (190)
111 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-26 4.5E-31 169.0 12.9 158 5-171 6-171 (188)
112 2dyk_A GTP-binding protein; GT 99.9 5.8E-26 2E-30 161.4 13.6 150 7-167 2-160 (161)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 1.8E-27 6E-32 185.7 6.0 157 8-171 1-176 (331)
114 2gj8_A MNME, tRNA modification 99.9 1.4E-26 4.7E-31 167.1 10.0 154 5-168 3-165 (172)
115 3a1s_A Iron(II) transport prot 99.9 9.1E-26 3.1E-30 172.7 14.4 155 5-168 4-166 (258)
116 3b1v_A Ferrous iron uptake tra 99.9 3.3E-26 1.1E-30 176.2 11.1 153 5-167 2-162 (272)
117 3iby_A Ferrous iron transport 99.9 3.7E-26 1.3E-30 174.7 10.1 151 7-166 2-164 (256)
118 3dpu_A RAB family protein; roc 99.9 1.7E-26 5.7E-31 193.7 8.9 165 2-170 37-209 (535)
119 3pqc_A Probable GTP-binding pr 99.9 2E-25 6.8E-30 163.4 13.6 157 3-169 20-194 (195)
120 3iev_A GTP-binding protein ERA 99.9 4.5E-25 1.5E-29 173.0 16.1 161 4-168 8-181 (308)
121 3k53_A Ferrous iron transport 99.9 4.9E-25 1.7E-29 170.0 12.5 156 6-169 3-166 (271)
122 4dhe_A Probable GTP-binding pr 99.9 2.8E-25 9.4E-30 166.4 10.6 164 4-171 27-213 (223)
123 3i8s_A Ferrous iron transport 99.9 1.7E-25 5.8E-30 172.7 9.6 153 6-167 3-167 (274)
124 1nrj_B SR-beta, signal recogni 99.9 4.6E-25 1.6E-29 164.7 6.4 144 3-155 9-170 (218)
125 2hjg_A GTP-binding protein ENG 99.9 5.4E-24 1.9E-28 174.3 12.9 161 5-171 174-351 (436)
126 3gee_A MNME, tRNA modification 99.9 2.2E-23 7.7E-28 171.6 14.9 156 6-168 233-397 (476)
127 2e87_A Hypothetical protein PH 99.9 5.9E-23 2E-27 164.1 16.5 162 5-171 166-338 (357)
128 4dcu_A GTP-binding protein ENG 99.9 1.6E-23 5.3E-28 172.5 12.9 163 4-172 193-372 (456)
129 1mky_A Probable GTP-binding pr 99.9 5.9E-23 2E-27 168.3 16.1 177 7-196 2-192 (439)
130 1wf3_A GTP-binding protein; GT 99.9 1.9E-23 6.5E-28 163.1 11.4 153 6-167 7-171 (301)
131 1cip_A Protein (guanine nucleo 99.9 1E-23 3.6E-28 167.4 10.0 125 46-172 186-347 (353)
132 1lnz_A SPO0B-associated GTP-bi 99.9 8.8E-24 3E-28 167.3 9.5 158 7-169 159-330 (342)
133 1xzp_A Probable tRNA modificat 99.9 7.4E-23 2.5E-27 168.6 14.0 154 6-170 243-406 (482)
134 3qq5_A Small GTP-binding prote 99.9 5E-24 1.7E-28 172.8 6.1 157 4-169 32-196 (423)
135 1s0u_A EIF-2-gamma, translatio 99.9 6.1E-22 2.1E-26 160.9 18.0 161 1-167 3-196 (408)
136 3ohm_A Guanine nucleotide-bind 99.9 2.8E-22 9.4E-27 157.2 13.7 125 46-172 160-321 (327)
137 3sjy_A Translation initiation 99.9 2.5E-21 8.6E-26 157.0 19.4 163 2-167 4-190 (403)
138 3lxx_A GTPase IMAP family memb 99.9 8.1E-22 2.8E-26 149.2 14.9 162 4-169 27-214 (239)
139 1wb1_A Translation elongation 99.9 5.5E-22 1.9E-26 164.0 14.7 155 5-168 18-188 (482)
140 2ywe_A GTP-binding protein LEP 99.9 9.9E-22 3.4E-26 165.2 16.2 161 1-167 1-182 (600)
141 2xtz_A Guanine nucleotide-bind 99.9 2.2E-22 7.6E-27 159.8 11.6 120 53-172 181-348 (354)
142 3cb4_D GTP-binding protein LEP 99.9 9.5E-22 3.3E-26 165.5 15.4 158 4-167 2-180 (599)
143 2hjg_A GTP-binding protein ENG 99.9 4.9E-23 1.7E-27 168.7 6.8 173 7-194 4-185 (436)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 3.1E-21 1.1E-25 154.0 16.9 160 8-170 181-355 (364)
145 1kk1_A EIF2gamma; initiation o 99.9 9E-22 3.1E-26 160.0 14.0 159 3-167 7-198 (410)
146 1zcb_A G alpha I/13; GTP-bindi 99.9 8.4E-22 2.9E-26 157.0 12.7 124 47-172 195-356 (362)
147 3p26_A Elongation factor 1 alp 99.9 3.4E-22 1.2E-26 165.6 10.4 153 5-159 32-228 (483)
148 3t5d_A Septin-7; GTP-binding p 99.9 1.8E-22 6.2E-27 155.8 8.2 161 2-166 4-201 (274)
149 3lxw_A GTPase IMAP family memb 99.9 1.4E-21 4.8E-26 148.6 12.7 165 4-170 19-209 (247)
150 2xtp_A GTPase IMAP family memb 99.9 1.4E-21 4.9E-26 149.7 12.6 161 5-170 21-209 (260)
151 3geh_A MNME, tRNA modification 99.9 1.8E-22 6.2E-27 165.6 8.0 152 6-169 224-384 (462)
152 3j2k_7 ERF3, eukaryotic polype 99.9 2.5E-21 8.5E-26 158.5 14.3 156 4-161 15-217 (439)
153 4fid_A G protein alpha subunit 99.9 5.1E-22 1.7E-26 156.2 9.6 119 53-171 159-330 (340)
154 1ega_A Protein (GTP-binding pr 99.9 5.7E-22 1.9E-26 154.9 9.0 155 6-167 8-173 (301)
155 1mky_A Probable GTP-binding pr 99.9 5.2E-21 1.8E-25 156.8 14.7 160 5-170 179-356 (439)
156 2qag_A Septin-2, protein NEDD5 99.9 1.4E-22 5E-27 161.9 4.9 169 4-177 35-241 (361)
157 3izy_P Translation initiation 99.9 1.1E-23 3.7E-28 175.0 -2.2 159 5-168 3-167 (537)
158 1jny_A EF-1-alpha, elongation 99.9 1.9E-22 6.5E-27 165.0 4.7 160 1-161 1-205 (435)
159 2elf_A Protein translation elo 99.9 2.3E-21 7.7E-26 155.3 10.4 147 8-170 23-181 (370)
160 1zun_B Sulfate adenylate trans 99.8 5.6E-21 1.9E-25 156.3 11.8 155 4-162 22-217 (434)
161 2c78_A Elongation factor TU-A; 99.8 2.8E-21 9.5E-26 156.9 9.8 148 4-155 9-180 (405)
162 1azs_C GS-alpha; complex (lyas 99.8 1.4E-20 4.7E-25 151.2 13.5 124 47-172 211-388 (402)
163 1d2e_A Elongation factor TU (E 99.8 3.2E-21 1.1E-25 156.1 9.8 157 6-166 3-192 (397)
164 1g7s_A Translation initiation 99.8 1.3E-20 4.6E-25 158.7 13.2 160 5-171 4-220 (594)
165 2ged_A SR-beta, signal recogni 99.8 9.1E-21 3.1E-25 138.6 10.5 115 4-127 46-172 (193)
166 4dcu_A GTP-binding protein ENG 99.8 3.3E-21 1.1E-25 158.7 8.0 153 6-168 23-184 (456)
167 3tr5_A RF-3, peptide chain rel 99.8 1.4E-20 4.8E-25 156.7 11.0 115 5-125 12-148 (528)
168 1r5b_A Eukaryotic peptide chai 99.8 1.5E-21 5E-26 161.0 4.8 157 4-160 41-243 (467)
169 1zo1_I IF2, translation initia 99.8 2.7E-22 9.1E-27 165.4 -1.1 152 5-165 3-163 (501)
170 3izq_1 HBS1P, elongation facto 99.8 1.1E-20 3.6E-25 160.1 7.8 156 5-160 166-363 (611)
171 1pui_A ENGB, probable GTP-bind 99.8 5.7E-20 2E-24 136.1 10.9 157 4-169 24-199 (210)
172 2aka_B Dynamin-1; fusion prote 99.8 1.7E-20 5.9E-25 146.3 7.2 166 5-173 25-257 (299)
173 1f60_A Elongation factor EEF1A 99.8 2.3E-20 7.8E-25 153.5 8.1 156 1-159 1-202 (458)
174 3avx_A Elongation factor TS, e 99.8 3.9E-20 1.3E-24 163.1 9.5 157 5-165 295-482 (1289)
175 2dy1_A Elongation factor G; tr 99.8 5.9E-19 2E-23 151.0 14.3 117 4-124 7-139 (665)
176 1udx_A The GTP-binding protein 99.8 4.4E-19 1.5E-23 143.5 12.8 160 7-170 158-326 (416)
177 3def_A T7I23.11 protein; chlor 99.8 1.4E-18 4.7E-23 133.2 14.3 125 5-131 35-171 (262)
178 3t34_A Dynamin-related protein 99.8 3.4E-19 1.2E-23 142.5 7.8 159 6-166 34-258 (360)
179 3mca_A HBS1, elongation factor 99.8 5.7E-20 1.9E-24 155.2 2.9 147 4-157 175-371 (592)
180 2qnr_A Septin-2, protein NEDD5 99.8 8.5E-20 2.9E-24 142.5 3.6 165 4-173 16-218 (301)
181 2h5e_A Peptide chain release f 99.8 3.7E-18 1.3E-22 142.3 13.3 118 4-125 11-148 (529)
182 1dar_A EF-G, elongation factor 99.8 3.6E-18 1.2E-22 146.6 12.5 117 3-125 9-143 (691)
183 1h65_A Chloroplast outer envel 99.8 3.5E-18 1.2E-22 131.5 11.1 126 5-131 38-174 (270)
184 2j69_A Bacterial dynamin-like 99.8 6.1E-18 2.1E-22 145.3 13.7 163 5-170 68-326 (695)
185 1jwy_B Dynamin A GTPase domain 99.8 3.5E-18 1.2E-22 134.2 10.9 112 55-169 131-262 (315)
186 1wxq_A GTP-binding protein; st 99.7 2.2E-18 7.4E-23 139.1 7.4 85 7-91 1-114 (397)
187 2rdo_7 EF-G, elongation factor 99.7 1E-16 3.5E-21 137.8 17.0 118 4-125 8-148 (704)
188 1u0l_A Probable GTPase ENGC; p 99.7 1E-18 3.5E-23 136.4 4.2 133 21-164 32-168 (301)
189 2xex_A Elongation factor G; GT 99.7 9.8E-17 3.4E-21 137.8 16.5 116 4-125 8-141 (693)
190 2qag_C Septin-7; cell cycle, c 99.7 7.4E-18 2.5E-22 136.4 7.1 159 4-166 29-224 (418)
191 2wsm_A Hydrogenase expression/ 99.7 2.2E-17 7.6E-22 123.1 5.6 155 5-170 29-215 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 1.6E-17 5.5E-22 132.5 4.6 158 6-166 31-255 (353)
193 1jal_A YCHF protein; nucleotid 99.7 9.9E-16 3.4E-20 121.5 14.6 146 7-152 3-240 (363)
194 3vqt_A RF-3, peptide chain rel 99.6 3.6E-15 1.2E-19 124.9 15.2 114 6-125 31-166 (548)
195 1n0u_A EF-2, elongation factor 99.6 9.1E-16 3.1E-20 134.3 10.2 118 3-124 16-163 (842)
196 2hf9_A Probable hydrogenase ni 99.6 6.1E-17 2.1E-21 121.1 1.5 154 5-169 37-224 (226)
197 2dby_A GTP-binding protein; GD 99.6 2.5E-15 8.4E-20 119.9 10.5 156 7-162 2-255 (368)
198 3p32_A Probable GTPase RV1496/ 99.6 2.5E-16 8.6E-21 125.6 4.2 106 54-170 171-285 (355)
199 2qpt_A EH domain-containing pr 99.6 1.5E-15 5.1E-20 127.3 8.7 116 4-125 63-232 (550)
200 4a9a_A Ribosome-interacting GT 99.6 8.1E-14 2.8E-18 111.1 16.2 152 5-160 71-239 (376)
201 2www_A Methylmalonic aciduria 99.6 9.9E-16 3.4E-20 121.8 4.0 104 54-169 166-279 (349)
202 3j25_A Tetracycline resistance 99.6 2.2E-15 7.7E-20 128.4 5.5 116 6-125 2-133 (638)
203 1yrb_A ATP(GTP)binding protein 99.5 7.6E-14 2.6E-18 106.6 11.5 110 55-169 109-257 (262)
204 4fn5_A EF-G 1, elongation fact 99.5 4.4E-13 1.5E-17 115.7 16.1 117 4-124 11-150 (709)
205 2p67_A LAO/AO transport system 99.5 1.7E-14 5.9E-19 114.4 6.3 104 54-168 148-260 (341)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 5.3E-14 1.8E-18 120.8 9.0 156 5-166 50-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.4 3.7E-13 1.3E-17 105.0 7.4 97 65-164 66-164 (302)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.4E-11 4.7E-16 98.9 16.0 85 6-90 20-127 (392)
209 2qm8_A GTPase/ATPase; G protei 99.4 1.5E-12 5.1E-17 103.0 9.5 104 54-168 147-260 (337)
210 3l82_B F-box only protein 4; T 99.4 4.2E-13 1.4E-17 97.6 4.8 103 63-168 110-222 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 7.5E-13 2.6E-17 106.0 6.4 86 6-91 22-129 (396)
212 3l2o_B F-box only protein 4; s 99.3 1.4E-11 4.6E-16 93.9 8.0 106 62-169 194-308 (312)
213 3h2y_A GTPase family protein; 99.1 3.9E-10 1.3E-14 90.1 8.7 96 64-166 55-157 (368)
214 2qag_B Septin-6, protein NEDD5 99.0 2.4E-09 8.1E-14 86.6 8.7 140 6-150 42-217 (427)
215 3ec1_A YQEH GTPase; atnos1, at 98.9 6.4E-11 2.2E-15 94.7 -1.2 140 7-156 163-318 (369)
216 3ec1_A YQEH GTPase; atnos1, at 98.9 2.6E-09 9E-14 85.4 7.7 98 63-167 56-160 (369)
217 3h2y_A GTPase family protein; 98.9 4.7E-11 1.6E-15 95.5 -3.1 136 7-150 161-311 (368)
218 1tq4_A IIGP1, interferon-induc 98.9 4.7E-08 1.6E-12 79.0 14.2 153 6-167 69-251 (413)
219 1puj_A YLQF, conserved hypothe 98.9 3E-09 1E-13 82.0 6.8 102 59-170 3-107 (282)
220 2j37_W Signal recognition part 98.9 3.9E-10 1.3E-14 93.2 1.7 151 5-166 100-310 (504)
221 3sop_A Neuronal-specific septi 98.8 1.1E-08 3.8E-13 78.3 7.9 137 6-147 2-178 (270)
222 1puj_A YLQF, conserved hypothe 98.6 4.8E-08 1.6E-12 75.2 5.2 58 5-66 119-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 3.4E-08 1.2E-12 75.3 2.7 57 7-67 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.4 1.6E-06 5.6E-11 70.4 9.2 86 55-150 183-274 (443)
225 3cnl_A YLQF, putative uncharac 98.4 7.1E-08 2.4E-12 73.5 0.9 93 62-165 4-97 (262)
226 1f5n_A Interferon-induced guan 98.2 1.5E-06 5E-11 73.2 6.2 63 5-67 37-103 (592)
227 3szr_A Interferon-induced GTP- 98.2 6E-06 2.1E-10 70.1 9.6 26 7-32 46-71 (608)
228 1j8m_F SRP54, signal recogniti 98.2 5.9E-06 2E-10 64.0 8.3 92 54-158 180-280 (297)
229 2v3c_C SRP54, signal recogniti 98.2 7.5E-06 2.6E-10 66.6 9.2 84 54-148 180-271 (432)
230 1t9h_A YLOQ, probable GTPase E 98.2 4.2E-07 1.4E-11 70.6 1.6 90 70-162 78-170 (307)
231 3kl4_A SRP54, signal recogniti 98.2 5.3E-06 1.8E-10 67.4 8.0 91 54-156 179-277 (433)
232 2rcn_A Probable GTPase ENGC; Y 98.1 9.4E-06 3.2E-10 64.3 7.6 84 75-162 127-212 (358)
233 3e70_C DPA, signal recognition 97.9 2.6E-05 8.9E-10 61.2 7.0 93 55-159 212-310 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.8 1.6E-06 5.6E-11 71.4 -1.8 109 6-119 39-157 (469)
235 3q5d_A Atlastin-1; G protein, 97.7 5.6E-05 1.9E-09 61.6 5.5 24 6-29 67-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.6 4E-05 1.4E-09 54.7 3.3 23 7-29 1-23 (178)
237 3asz_A Uridine kinase; cytidin 97.5 7.2E-05 2.5E-09 54.6 3.4 29 1-29 1-29 (211)
238 2rcn_A Probable GTPase ENGC; Y 97.4 0.00011 3.6E-09 58.3 3.7 24 8-31 217-240 (358)
239 1kgd_A CASK, peripheral plasma 97.4 9.9E-05 3.4E-09 52.6 3.1 22 8-29 7-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.4 9.8E-05 3.3E-09 53.6 3.1 23 7-29 5-27 (198)
241 2yv5_A YJEQ protein; hydrolase 97.3 0.00039 1.3E-08 53.9 6.4 22 8-30 167-188 (302)
242 2j41_A Guanylate kinase; GMP, 97.3 0.00012 4.1E-09 53.1 3.3 30 1-30 1-30 (207)
243 1t9h_A YLOQ, probable GTPase E 97.3 6.2E-05 2.1E-09 58.4 1.7 23 8-30 175-197 (307)
244 3a00_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 52.6 3.0 21 9-29 4-24 (186)
245 3tr0_A Guanylate kinase, GMP k 97.3 0.00013 4.4E-09 52.9 3.1 22 8-29 9-30 (205)
246 1znw_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 53.2 3.1 23 8-30 22-44 (207)
247 2xxa_A Signal recognition part 97.3 0.0021 7.1E-08 52.3 10.2 82 54-146 183-271 (433)
248 4gp7_A Metallophosphoesterase; 97.2 0.00014 4.7E-09 51.5 2.6 20 8-27 11-30 (171)
249 1zp6_A Hypothetical protein AT 97.2 0.00018 6.2E-09 51.5 3.3 24 6-29 9-32 (191)
250 4eun_A Thermoresistant glucoki 97.2 0.00018 6.2E-09 52.1 3.2 25 5-29 28-52 (200)
251 1htw_A HI0065; nucleotide-bind 97.2 0.00018 6.3E-09 50.2 3.1 23 8-30 35-57 (158)
252 1s96_A Guanylate kinase, GMP k 97.2 0.00018 6E-09 53.2 3.1 23 8-30 18-40 (219)
253 1z6g_A Guanylate kinase; struc 97.2 0.00017 5.9E-09 53.1 3.1 23 8-30 25-47 (218)
254 3tif_A Uncharacterized ABC tra 97.2 0.00018 6.2E-09 53.7 3.0 23 8-30 33-55 (235)
255 2pcj_A ABC transporter, lipopr 97.2 0.00021 7.3E-09 52.9 2.9 22 8-29 32-53 (224)
256 3c8u_A Fructokinase; YP_612366 97.2 0.00022 7.5E-09 52.0 3.0 25 5-29 21-45 (208)
257 2onk_A Molybdate/tungstate ABC 97.1 0.00026 8.8E-09 53.0 3.2 23 8-30 26-48 (240)
258 3ney_A 55 kDa erythrocyte memb 97.1 0.00032 1.1E-08 50.8 3.4 23 7-29 20-42 (197)
259 1sgw_A Putative ABC transporte 97.1 0.00027 9.4E-09 51.9 3.0 22 8-29 37-58 (214)
260 3gfo_A Cobalt import ATP-bindi 97.1 0.00027 9.2E-09 54.0 3.0 23 8-30 36-58 (275)
261 3tau_A Guanylate kinase, GMP k 97.1 0.00029 9.8E-09 51.5 3.1 24 7-30 9-32 (208)
262 1b0u_A Histidine permease; ABC 97.1 0.00027 9.4E-09 53.6 3.0 23 8-30 34-56 (262)
263 1g6h_A High-affinity branched- 97.1 0.00029 9.9E-09 53.3 3.0 23 8-30 35-57 (257)
264 2cbz_A Multidrug resistance-as 97.1 0.0003 1E-08 52.5 3.0 22 8-29 33-54 (237)
265 2bdt_A BH3686; alpha-beta prot 97.1 0.00033 1.1E-08 50.1 3.1 21 8-28 4-24 (189)
266 2pze_A Cystic fibrosis transme 97.0 0.00033 1.1E-08 52.0 3.0 23 8-30 36-58 (229)
267 2olj_A Amino acid ABC transpor 97.0 0.00032 1.1E-08 53.2 3.0 23 8-30 52-74 (263)
268 1ji0_A ABC transporter; ATP bi 97.0 0.00033 1.1E-08 52.4 3.0 22 8-29 34-55 (240)
269 1vpl_A ABC transporter, ATP-bi 97.0 0.00034 1.2E-08 52.9 3.0 23 8-30 43-65 (256)
270 4g1u_C Hemin import ATP-bindin 97.0 0.00044 1.5E-08 52.6 3.7 23 8-30 39-61 (266)
271 1knq_A Gluconate kinase; ALFA/ 97.0 0.00048 1.6E-08 48.6 3.6 23 6-28 8-30 (175)
272 2ff7_A Alpha-hemolysin translo 97.0 0.00034 1.2E-08 52.6 3.0 23 8-30 37-59 (247)
273 3b85_A Phosphate starvation-in 97.0 0.00028 9.7E-09 51.6 2.5 22 8-29 24-45 (208)
274 2i3b_A HCR-ntpase, human cance 97.0 0.00037 1.3E-08 50.2 3.0 22 8-29 3-24 (189)
275 1kag_A SKI, shikimate kinase I 97.0 0.00039 1.3E-08 48.9 3.1 23 7-29 5-27 (173)
276 1mv5_A LMRA, multidrug resista 97.0 0.00039 1.3E-08 52.1 3.3 23 8-30 30-52 (243)
277 2qi9_C Vitamin B12 import ATP- 97.0 0.00036 1.2E-08 52.5 3.0 23 8-30 28-50 (249)
278 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00038 1.3E-08 52.4 3.1 22 8-29 31-52 (250)
279 2zu0_C Probable ATP-dependent 97.0 0.00039 1.4E-08 52.9 3.2 22 8-29 48-69 (267)
280 2ghi_A Transport protein; mult 97.0 0.0004 1.4E-08 52.6 3.0 22 8-29 48-69 (260)
281 1ex7_A Guanylate kinase; subst 97.0 0.00046 1.6E-08 49.6 3.1 21 9-29 4-24 (186)
282 2nq2_C Hypothetical ABC transp 97.0 0.00043 1.5E-08 52.2 3.0 23 8-30 33-55 (253)
283 2ixe_A Antigen peptide transpo 97.0 0.00043 1.5E-08 52.8 3.0 23 8-30 47-69 (271)
284 2ihy_A ABC transporter, ATP-bi 97.0 0.00057 1.9E-08 52.3 3.7 23 8-30 49-71 (279)
285 2yz2_A Putative ABC transporte 96.9 0.00043 1.5E-08 52.6 3.0 23 8-30 35-57 (266)
286 2qor_A Guanylate kinase; phosp 96.9 0.00048 1.6E-08 50.0 3.1 23 7-29 13-35 (204)
287 2bbw_A Adenylate kinase 4, AK4 96.9 0.00051 1.7E-08 51.4 3.3 21 7-27 28-48 (246)
288 3lw7_A Adenylate kinase relate 96.9 0.00053 1.8E-08 48.0 3.1 20 7-26 2-21 (179)
289 3fb4_A Adenylate kinase; psych 96.9 0.00051 1.7E-08 50.2 3.1 22 7-28 1-22 (216)
290 2eyu_A Twitching motility prot 96.9 0.00049 1.7E-08 52.1 3.0 22 8-29 27-48 (261)
291 1y63_A LMAJ004144AAA protein; 96.9 0.00058 2E-08 48.8 3.2 28 2-29 6-33 (184)
292 1qf9_A UMP/CMP kinase, protein 96.9 0.00069 2.4E-08 48.3 3.7 28 1-28 1-28 (194)
293 2v9p_A Replication protein E1; 96.9 0.00054 1.8E-08 53.1 3.2 22 8-29 128-149 (305)
294 3dl0_A Adenylate kinase; phosp 96.9 0.00055 1.9E-08 50.1 3.1 22 7-28 1-22 (216)
295 2pjz_A Hypothetical protein ST 96.9 0.0006 2.1E-08 51.7 3.3 23 8-30 32-54 (263)
296 2if2_A Dephospho-COA kinase; a 96.9 0.00062 2.1E-08 49.3 3.2 22 7-28 2-23 (204)
297 3aez_A Pantothenate kinase; tr 96.9 0.00056 1.9E-08 53.2 3.1 25 5-29 89-113 (312)
298 1ly1_A Polynucleotide kinase; 96.9 0.00069 2.4E-08 47.8 3.4 22 7-28 3-24 (181)
299 2ehv_A Hypothetical protein PH 96.9 0.0006 2E-08 50.8 3.1 20 8-27 32-51 (251)
300 1cke_A CK, MSSA, protein (cyti 96.9 0.00069 2.4E-08 49.8 3.4 22 7-28 6-27 (227)
301 3kb2_A SPBC2 prophage-derived 96.9 0.00065 2.2E-08 47.6 3.1 22 8-29 3-24 (173)
302 4a74_A DNA repair and recombin 96.8 0.00059 2E-08 50.2 3.0 22 8-29 27-48 (231)
303 1u0l_A Probable GTPase ENGC; p 96.8 0.00075 2.6E-08 52.2 3.6 24 8-31 171-194 (301)
304 2jeo_A Uridine-cytidine kinase 96.8 0.00076 2.6E-08 50.5 3.5 23 6-28 25-47 (245)
305 1np6_A Molybdopterin-guanine d 96.8 0.00073 2.5E-08 47.9 3.1 23 7-29 7-29 (174)
306 1jjv_A Dephospho-COA kinase; P 96.8 0.00087 3E-08 48.6 3.5 22 7-28 3-24 (206)
307 3lnc_A Guanylate kinase, GMP k 96.8 0.00045 1.5E-08 51.2 2.0 22 8-29 29-51 (231)
308 2bbs_A Cystic fibrosis transme 96.8 0.00066 2.3E-08 52.2 2.9 22 8-29 66-87 (290)
309 3t61_A Gluconokinase; PSI-biol 96.8 0.00075 2.6E-08 48.8 3.0 23 7-29 19-41 (202)
310 2jaq_A Deoxyguanosine kinase; 96.8 0.00082 2.8E-08 48.4 3.2 21 8-28 2-22 (205)
311 3ec2_A DNA replication protein 96.8 0.00064 2.2E-08 48.2 2.6 23 7-29 39-61 (180)
312 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00094 3.2E-08 52.9 3.7 23 8-30 32-54 (359)
313 3tui_C Methionine import ATP-b 96.8 0.00077 2.6E-08 53.5 3.2 23 8-30 56-78 (366)
314 3sr0_A Adenylate kinase; phosp 96.8 0.00088 3E-08 48.9 3.2 22 7-28 1-22 (206)
315 1lw7_A Transcriptional regulat 96.7 0.0007 2.4E-08 53.8 2.8 24 6-29 170-193 (365)
316 3vaa_A Shikimate kinase, SK; s 96.7 0.00091 3.1E-08 48.3 3.2 22 7-28 26-47 (199)
317 3nh6_A ATP-binding cassette SU 96.7 0.00054 1.9E-08 53.1 2.1 22 8-29 82-103 (306)
318 1z47_A CYSA, putative ABC-tran 96.7 0.0008 2.7E-08 53.2 3.1 23 8-30 43-65 (355)
319 1nn5_A Similar to deoxythymidy 96.7 0.00085 2.9E-08 48.8 3.1 24 5-28 8-31 (215)
320 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.7E-08 47.1 3.6 23 6-28 4-26 (186)
321 3uie_A Adenylyl-sulfate kinase 96.7 0.00071 2.4E-08 48.9 2.6 24 6-29 25-48 (200)
322 1e4v_A Adenylate kinase; trans 96.7 0.00085 2.9E-08 49.0 3.0 22 7-28 1-22 (214)
323 1qhx_A CPT, protein (chloramph 96.7 0.00089 3E-08 47.2 3.0 23 7-29 4-26 (178)
324 1nks_A Adenylate kinase; therm 96.7 0.001 3.4E-08 47.5 3.3 22 7-28 2-23 (194)
325 2yyz_A Sugar ABC transporter, 96.7 0.00086 2.9E-08 53.2 3.1 23 8-30 31-53 (359)
326 3rlf_A Maltose/maltodextrin im 96.7 0.00089 3E-08 53.4 3.2 23 8-30 31-53 (381)
327 2it1_A 362AA long hypothetical 96.7 0.0009 3.1E-08 53.1 3.2 23 8-30 31-53 (362)
328 2f1r_A Molybdopterin-guanine d 96.7 0.00047 1.6E-08 48.8 1.4 22 8-29 4-25 (171)
329 1kht_A Adenylate kinase; phosp 96.7 0.001 3.6E-08 47.3 3.2 22 7-28 4-25 (192)
330 1g29_1 MALK, maltose transport 96.7 0.00097 3.3E-08 53.2 3.1 23 8-30 31-53 (372)
331 1v43_A Sugar-binding transport 96.7 0.001 3.4E-08 53.0 3.2 23 8-30 39-61 (372)
332 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 3.9E-08 46.2 3.1 22 7-28 1-22 (168)
333 2rhm_A Putative kinase; P-loop 96.6 0.0012 4.1E-08 47.1 3.2 23 6-28 5-27 (193)
334 3jvv_A Twitching mobility prot 96.6 0.0011 3.7E-08 52.6 3.0 22 8-29 125-146 (356)
335 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 47.2 3.4 24 6-29 4-27 (204)
336 3tlx_A Adenylate kinase 2; str 96.6 0.0014 4.7E-08 49.1 3.4 24 5-28 28-51 (243)
337 2qt1_A Nicotinamide riboside k 96.6 0.0016 5.6E-08 47.2 3.7 24 6-29 21-44 (207)
338 3trf_A Shikimate kinase, SK; a 96.6 0.0013 4.6E-08 46.7 3.1 22 7-28 6-27 (185)
339 3d31_A Sulfate/molybdate ABC t 96.6 0.00081 2.8E-08 53.1 2.1 23 8-30 28-50 (348)
340 1sq5_A Pantothenate kinase; P- 96.6 0.0012 4.1E-08 51.2 3.0 24 6-29 80-103 (308)
341 1aky_A Adenylate kinase; ATP:A 96.6 0.0013 4.5E-08 48.2 3.1 23 6-28 4-26 (220)
342 1tev_A UMP-CMP kinase; ploop, 96.6 0.0015 5.1E-08 46.6 3.4 23 6-28 3-25 (196)
343 1rz3_A Hypothetical protein rb 96.6 0.0017 5.8E-08 47.0 3.7 24 5-28 21-44 (201)
344 2cdn_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 47.4 3.1 23 6-28 20-42 (201)
345 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.7E-08 48.3 3.1 22 7-28 1-22 (223)
346 2plr_A DTMP kinase, probable t 96.5 0.0016 5.5E-08 47.1 3.4 22 7-28 5-26 (213)
347 3gd7_A Fusion complex of cysti 96.5 0.0013 4.4E-08 52.8 3.0 22 8-29 49-70 (390)
348 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0013 4.4E-08 51.6 3.0 23 8-30 173-195 (330)
349 2kjq_A DNAA-related protein; s 96.5 0.001 3.5E-08 45.9 2.1 22 8-29 38-59 (149)
350 1rj9_A FTSY, signal recognitio 96.5 0.0014 4.6E-08 50.9 3.1 22 7-28 103-124 (304)
351 3b9q_A Chloroplast SRP recepto 96.5 0.0014 4.7E-08 50.8 3.1 22 7-28 101-122 (302)
352 1ukz_A Uridylate kinase; trans 96.5 0.0018 6.2E-08 46.7 3.6 24 5-28 14-37 (203)
353 3tqc_A Pantothenate kinase; bi 96.5 0.0019 6.4E-08 50.4 3.8 24 5-28 91-114 (321)
354 2x8a_A Nuclear valosin-contain 96.5 0.0014 4.8E-08 50.0 3.0 22 8-29 46-67 (274)
355 1via_A Shikimate kinase; struc 96.5 0.0014 4.9E-08 46.1 2.9 21 8-28 6-26 (175)
356 1vht_A Dephospho-COA kinase; s 96.5 0.0018 6.1E-08 47.4 3.5 23 6-28 4-26 (218)
357 1uj2_A Uridine-cytidine kinase 96.5 0.0016 5.6E-08 48.8 3.3 26 3-28 19-44 (252)
358 3iij_A Coilin-interacting nucl 96.5 0.0017 5.8E-08 46.0 3.2 22 7-28 12-33 (180)
359 1zd8_A GTP:AMP phosphotransfer 96.5 0.0015 5.1E-08 48.2 3.0 23 6-28 7-29 (227)
360 1xjc_A MOBB protein homolog; s 96.5 0.0017 6E-08 45.7 3.1 23 6-28 4-26 (169)
361 2gza_A Type IV secretion syste 96.5 0.0014 4.8E-08 52.0 2.9 22 8-29 177-198 (361)
362 3co5_A Putative two-component 96.5 0.0076 2.6E-07 41.0 6.2 23 7-29 28-50 (143)
363 1oxx_K GLCV, glucose, ABC tran 96.4 0.00081 2.8E-08 53.2 1.3 23 8-30 33-55 (353)
364 1zak_A Adenylate kinase; ATP:A 96.4 0.0014 4.9E-08 48.1 2.6 23 6-28 5-27 (222)
365 2vp4_A Deoxynucleoside kinase; 96.4 0.0013 4.5E-08 48.7 2.4 24 6-29 20-43 (230)
366 2pbr_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 46.2 3.1 21 8-28 2-22 (195)
367 2ewv_A Twitching motility prot 96.4 0.0018 6E-08 51.7 3.2 22 8-29 138-159 (372)
368 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0046 1.6E-07 50.4 5.6 23 5-27 66-88 (457)
369 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0015 5.2E-08 53.5 2.9 23 7-29 139-161 (460)
370 2z0h_A DTMP kinase, thymidylat 96.4 0.0019 6.5E-08 46.2 3.1 22 8-29 2-23 (197)
371 3uc9_A Increased recombination 96.4 0.0041 1.4E-07 45.9 4.8 22 8-29 29-52 (233)
372 1gvn_B Zeta; postsegregational 96.4 0.0022 7.5E-08 49.2 3.5 24 5-28 32-55 (287)
373 1p9r_A General secretion pathw 96.4 0.0017 5.9E-08 52.5 3.0 22 8-29 169-190 (418)
374 3kta_A Chromosome segregation 96.4 0.002 6.7E-08 45.7 3.0 21 8-28 28-48 (182)
375 1odf_A YGR205W, hypothetical 3 96.4 0.0025 8.5E-08 49.0 3.8 24 5-28 30-53 (290)
376 1nij_A Hypothetical protein YJ 96.4 0.0014 4.8E-08 51.1 2.4 25 6-30 4-28 (318)
377 3be4_A Adenylate kinase; malar 96.4 0.002 6.7E-08 47.2 3.0 23 6-28 5-27 (217)
378 2obl_A ESCN; ATPase, hydrolase 96.4 0.002 6.8E-08 50.9 3.2 23 8-30 73-95 (347)
379 2c95_A Adenylate kinase 1; tra 96.4 0.0021 7.1E-08 46.0 3.0 23 6-28 9-31 (196)
380 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.002 7E-08 47.2 3.1 22 8-29 25-46 (235)
381 2bwj_A Adenylate kinase 5; pho 96.4 0.002 6.9E-08 46.2 2.9 22 7-28 13-34 (199)
382 4e22_A Cytidylate kinase; P-lo 96.4 0.0022 7.4E-08 48.2 3.2 21 7-27 28-48 (252)
383 2ze6_A Isopentenyl transferase 96.4 0.0021 7.2E-08 48.4 3.1 21 8-28 3-23 (253)
384 2yvu_A Probable adenylyl-sulfa 96.3 0.0027 9.3E-08 45.2 3.5 23 6-28 13-35 (186)
385 1ixz_A ATP-dependent metallopr 96.3 0.0027 9.1E-08 47.6 3.6 22 8-29 51-72 (254)
386 2wwf_A Thymidilate kinase, put 96.3 0.0021 7.3E-08 46.6 3.0 23 6-28 10-32 (212)
387 2oap_1 GSPE-2, type II secreti 96.3 0.002 6.8E-08 53.6 3.1 23 8-30 262-284 (511)
388 1gtv_A TMK, thymidylate kinase 96.3 0.00087 3E-08 48.8 0.8 21 8-28 2-22 (214)
389 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0027 9.2E-08 47.9 3.5 23 6-28 4-26 (260)
390 2og2_A Putative signal recogni 96.3 0.0023 7.8E-08 50.7 3.1 22 7-28 158-179 (359)
391 2pez_A Bifunctional 3'-phospho 96.3 0.0026 8.8E-08 45.0 3.1 23 6-28 5-27 (179)
392 1uf9_A TT1252 protein; P-loop, 96.3 0.0028 9.6E-08 45.5 3.3 25 5-29 7-31 (203)
393 1e6c_A Shikimate kinase; phosp 96.3 0.0025 8.7E-08 44.6 3.0 22 7-28 3-24 (173)
394 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0035 1.2E-07 52.5 4.2 24 8-31 49-72 (538)
395 1ak2_A Adenylate kinase isoenz 96.3 0.0027 9.3E-08 47.0 3.2 23 6-28 16-38 (233)
396 3ozx_A RNAse L inhibitor; ATP 96.2 0.0032 1.1E-07 52.7 3.9 24 8-31 27-50 (538)
397 2iyv_A Shikimate kinase, SK; t 96.2 0.0023 8E-08 45.4 2.7 22 7-28 3-24 (184)
398 2yhs_A FTSY, cell division pro 96.2 0.0025 8.5E-08 52.5 3.1 92 55-158 376-479 (503)
399 2p5t_B PEZT; postsegregational 96.2 0.0022 7.5E-08 48.2 2.6 25 5-29 31-55 (253)
400 1cr0_A DNA primase/helicase; R 96.2 0.0025 8.7E-08 48.9 3.0 22 8-29 37-58 (296)
401 1sxj_E Activator 1 40 kDa subu 96.2 0.015 5.2E-07 45.6 7.5 21 8-28 38-58 (354)
402 1in4_A RUVB, holliday junction 96.2 0.0027 9.1E-08 49.8 3.1 23 7-29 52-74 (334)
403 2vli_A Antibiotic resistance p 96.2 0.0019 6.5E-08 45.7 2.1 23 6-28 5-27 (183)
404 1jbk_A CLPB protein; beta barr 96.2 0.0033 1.1E-07 44.3 3.3 23 7-29 44-66 (195)
405 1iy2_A ATP-dependent metallopr 96.2 0.0037 1.3E-07 47.6 3.7 22 8-29 75-96 (278)
406 3umf_A Adenylate kinase; rossm 96.2 0.0031 1.1E-07 46.3 3.1 20 9-28 32-51 (217)
407 3j16_B RLI1P; ribosome recycli 96.1 0.0039 1.3E-07 52.9 4.0 24 8-31 105-128 (608)
408 1zuh_A Shikimate kinase; alpha 96.1 0.0036 1.2E-07 43.7 3.2 22 7-28 8-29 (168)
409 3euj_A Chromosome partition pr 96.1 0.0031 1.1E-07 51.9 3.1 21 8-28 31-51 (483)
410 1n0w_A DNA repair protein RAD5 96.1 0.0034 1.2E-07 46.5 3.1 22 8-29 26-47 (243)
411 2cvh_A DNA repair and recombin 96.1 0.0034 1.2E-07 45.7 3.1 21 8-28 22-42 (220)
412 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0038 1.3E-07 43.0 3.1 19 9-27 26-44 (149)
413 2dpy_A FLII, flagellum-specifi 96.1 0.0035 1.2E-07 51.0 3.2 23 8-30 159-181 (438)
414 3nwj_A ATSK2; P loop, shikimat 96.1 0.0035 1.2E-07 47.1 3.0 22 7-28 49-70 (250)
415 2grj_A Dephospho-COA kinase; T 96.1 0.0049 1.7E-07 44.4 3.6 25 5-29 11-35 (192)
416 1m7g_A Adenylylsulfate kinase; 96.0 0.0039 1.3E-07 45.4 3.1 23 6-28 25-47 (211)
417 3r20_A Cytidylate kinase; stru 96.0 0.0041 1.4E-07 46.2 3.1 23 6-28 9-31 (233)
418 3bk7_A ABC transporter ATP-bin 96.0 0.0052 1.8E-07 52.2 4.1 24 8-31 119-142 (607)
419 3gmt_A Adenylate kinase; ssgci 96.0 0.0043 1.5E-07 46.0 3.1 24 5-28 7-30 (230)
420 4eaq_A DTMP kinase, thymidylat 96.0 0.0051 1.7E-07 45.5 3.5 25 5-29 25-49 (229)
421 3b60_A Lipid A export ATP-bind 96.0 0.0039 1.3E-07 52.7 3.2 22 8-29 371-392 (582)
422 2f6r_A COA synthase, bifunctio 96.0 0.0045 1.5E-07 47.3 3.3 23 6-28 75-97 (281)
423 1lv7_A FTSH; alpha/beta domain 95.9 0.0046 1.6E-07 46.4 3.1 24 6-29 45-68 (257)
424 3ozx_A RNAse L inhibitor; ATP 95.9 0.0051 1.8E-07 51.4 3.6 24 8-31 296-319 (538)
425 3bk7_A ABC transporter ATP-bin 95.9 0.0053 1.8E-07 52.1 3.7 24 8-31 384-407 (607)
426 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0059 2E-07 51.1 3.9 24 8-31 314-337 (538)
427 3b5x_A Lipid A export ATP-bind 95.9 0.0057 2E-07 51.7 3.8 23 8-30 371-393 (582)
428 2p65_A Hypothetical protein PF 95.9 0.0041 1.4E-07 43.7 2.5 23 7-29 44-66 (187)
429 1ltq_A Polynucleotide kinase; 95.8 0.0057 1.9E-07 47.0 3.4 22 7-28 3-24 (301)
430 1svm_A Large T antigen; AAA+ f 95.8 0.005 1.7E-07 49.1 3.1 22 7-28 170-191 (377)
431 1nlf_A Regulatory protein REPA 95.8 0.0049 1.7E-07 46.9 3.0 21 8-28 32-52 (279)
432 3bos_A Putative DNA replicatio 95.8 0.0058 2E-07 44.9 3.3 24 6-29 52-75 (242)
433 4dzz_A Plasmid partitioning pr 95.8 0.016 5.4E-07 41.6 5.5 85 55-146 76-162 (206)
434 2yl4_A ATP-binding cassette SU 95.8 0.004 1.4E-07 52.8 2.5 22 8-29 372-393 (595)
435 2w58_A DNAI, primosome compone 95.7 0.0069 2.4E-07 43.6 3.3 23 7-29 55-77 (202)
436 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0058 2E-07 48.5 3.1 19 9-27 26-44 (365)
437 1a7j_A Phosphoribulokinase; tr 95.7 0.0031 1.1E-07 48.5 1.5 27 1-28 1-27 (290)
438 3qf4_B Uncharacterized ABC tra 95.7 0.0046 1.6E-07 52.4 2.6 23 8-30 383-405 (598)
439 4a82_A Cystic fibrosis transme 95.7 0.0039 1.3E-07 52.6 2.1 22 8-29 369-390 (578)
440 3j16_B RLI1P; ribosome recycli 95.7 0.0071 2.4E-07 51.3 3.7 23 9-31 381-403 (608)
441 3ake_A Cytidylate kinase; CMP 95.7 0.0084 2.9E-07 43.2 3.5 21 8-28 4-24 (208)
442 3cwq_A Para family chromosome 95.6 0.068 2.3E-06 38.7 8.3 86 54-146 67-153 (209)
443 3qf4_A ABC transporter, ATP-bi 95.6 0.0053 1.8E-07 51.9 2.4 22 8-29 371-392 (587)
444 1njg_A DNA polymerase III subu 95.5 0.0079 2.7E-07 44.0 3.0 21 8-28 47-67 (250)
445 1pzn_A RAD51, DNA repair and r 95.5 0.0074 2.5E-07 47.6 3.0 22 8-29 133-154 (349)
446 2px0_A Flagellar biosynthesis 95.5 0.0078 2.7E-07 46.4 3.0 86 54-149 182-273 (296)
447 3zvl_A Bifunctional polynucleo 95.5 0.0082 2.8E-07 48.6 3.1 24 6-29 258-281 (416)
448 3n70_A Transport activator; si 95.5 0.0091 3.1E-07 40.7 2.9 24 6-29 24-47 (145)
449 1q3t_A Cytidylate kinase; nucl 95.5 0.0093 3.2E-07 44.1 3.2 23 6-28 16-38 (236)
450 3b9p_A CG5977-PA, isoform A; A 95.4 0.0083 2.8E-07 45.9 3.0 24 6-29 54-77 (297)
451 2chg_A Replication factor C sm 95.4 0.0091 3.1E-07 43.1 3.1 22 8-29 40-61 (226)
452 2dr3_A UPF0273 protein PH0284; 95.4 0.0089 3E-07 44.2 3.0 21 8-28 25-45 (247)
453 3h4m_A Proteasome-activating n 95.4 0.009 3.1E-07 45.4 3.0 24 6-29 51-74 (285)
454 2iw3_A Elongation factor 3A; a 95.4 0.01 3.5E-07 52.9 3.6 24 8-31 463-486 (986)
455 1qhl_A Protein (cell division 95.4 0.0013 4.5E-08 48.7 -1.7 23 9-31 30-52 (227)
456 3cf0_A Transitional endoplasmi 95.4 0.0092 3.2E-07 46.0 3.0 23 7-29 50-72 (301)
457 1tue_A Replication protein E1; 95.4 0.0081 2.8E-07 43.7 2.5 21 8-28 60-80 (212)
458 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.0099 3.4E-07 44.4 3.1 23 7-29 40-62 (262)
459 1vma_A Cell division protein F 95.3 0.01 3.5E-07 45.9 3.1 86 55-150 187-284 (306)
460 3qks_A DNA double-strand break 95.3 0.011 3.8E-07 42.8 3.1 19 9-27 26-44 (203)
461 3ld9_A DTMP kinase, thymidylat 95.3 0.012 4.3E-07 43.3 3.4 27 2-28 17-43 (223)
462 2iw3_A Elongation factor 3A; a 95.3 0.0071 2.4E-07 53.9 2.4 23 8-30 701-723 (986)
463 3pfi_A Holliday junction ATP-d 95.3 0.044 1.5E-06 42.6 6.8 23 7-29 56-78 (338)
464 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.8E-07 42.7 2.9 24 7-30 35-58 (205)
465 2ga8_A Hypothetical 39.9 kDa p 95.3 0.015 5.1E-07 45.9 3.9 22 6-27 24-45 (359)
466 3ea0_A ATPase, para family; al 95.3 0.12 4E-06 38.1 8.7 91 54-152 118-208 (245)
467 1l8q_A Chromosomal replication 95.3 0.01 3.6E-07 46.0 3.0 23 7-29 38-60 (324)
468 4f4c_A Multidrug resistance pr 95.2 0.013 4.6E-07 54.1 4.0 22 8-29 1107-1128(1321)
469 2qby_A CDC6 homolog 1, cell di 95.2 0.011 3.8E-07 46.6 3.0 24 6-29 45-68 (386)
470 3t15_A Ribulose bisphosphate c 95.1 0.013 4.3E-07 45.0 3.1 24 6-29 36-59 (293)
471 1p5z_B DCK, deoxycytidine kina 95.1 0.0094 3.2E-07 44.9 2.3 25 5-29 23-47 (263)
472 1sxj_C Activator 1 40 kDa subu 95.1 0.013 4.4E-07 45.9 3.0 22 8-29 48-69 (340)
473 1tf7_A KAIC; homohexamer, hexa 95.0 0.012 4.1E-07 49.0 3.0 20 9-28 42-63 (525)
474 3d3q_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 46.0 2.9 22 7-28 8-29 (340)
475 1fnn_A CDC6P, cell division co 95.0 0.014 4.7E-07 46.3 3.1 22 8-29 46-67 (389)
476 2h92_A Cytidylate kinase; ross 95.0 0.014 4.9E-07 42.4 3.0 22 7-28 4-25 (219)
477 3cr8_A Sulfate adenylyltranfer 95.0 0.0084 2.9E-07 50.3 1.9 24 6-29 369-392 (552)
478 3syl_A Protein CBBX; photosynt 95.0 0.015 5.2E-07 44.6 3.2 22 7-28 68-89 (309)
479 2ocp_A DGK, deoxyguanosine kin 95.0 0.017 5.7E-07 42.9 3.3 24 6-29 2-25 (241)
480 3crm_A TRNA delta(2)-isopenten 95.0 0.017 5.9E-07 44.9 3.5 23 7-29 6-28 (323)
481 1c9k_A COBU, adenosylcobinamid 94.9 0.017 5.7E-07 41.1 3.0 21 9-29 2-22 (180)
482 3tqf_A HPR(Ser) kinase; transf 94.9 0.02 7E-07 40.4 3.3 24 7-30 17-40 (181)
483 2o5v_A DNA replication and rep 94.9 0.016 5.6E-07 45.9 3.1 21 8-28 28-48 (359)
484 4fcw_A Chaperone protein CLPB; 94.9 0.016 5.5E-07 44.5 3.1 23 7-29 48-70 (311)
485 1ofh_A ATP-dependent HSL prote 94.9 0.016 5.6E-07 44.3 3.1 24 6-29 50-73 (310)
486 3lda_A DNA repair protein RAD5 94.9 0.015 5.2E-07 46.7 3.0 21 8-28 180-200 (400)
487 3ux8_A Excinuclease ABC, A sub 94.8 0.01 3.5E-07 51.0 2.0 19 8-26 350-368 (670)
488 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.016 5.6E-07 45.1 3.0 23 7-29 46-68 (322)
489 1d2n_A N-ethylmaleimide-sensit 94.8 0.022 7.6E-07 43.0 3.7 25 5-29 63-87 (272)
490 3qkt_A DNA double-strand break 94.8 0.017 5.9E-07 45.3 3.1 19 9-27 26-44 (339)
491 3exa_A TRNA delta(2)-isopenten 94.8 0.019 6.5E-07 44.5 3.2 23 7-29 4-26 (322)
492 4edh_A DTMP kinase, thymidylat 94.8 0.018 6.3E-07 42.0 2.9 22 7-28 7-28 (213)
493 3a8t_A Adenylate isopentenyltr 94.8 0.02 6.7E-07 44.9 3.2 22 8-29 42-63 (339)
494 1w1w_A Structural maintenance 94.7 0.018 6E-07 46.8 3.1 20 9-28 29-48 (430)
495 4b4t_K 26S protease regulatory 94.7 0.018 6.3E-07 46.6 3.1 23 7-29 207-229 (428)
496 1e69_A Chromosome segregation 94.7 0.014 4.8E-07 45.4 2.3 21 8-28 26-46 (322)
497 4b4t_M 26S protease regulatory 94.7 0.02 6.7E-07 46.5 3.1 24 6-29 215-238 (434)
498 3eie_A Vacuolar protein sortin 94.6 0.021 7.1E-07 44.4 3.2 23 7-29 52-74 (322)
499 4aby_A DNA repair protein RECN 94.6 0.0062 2.1E-07 49.0 0.2 20 8-27 62-81 (415)
500 1sxj_D Activator 1 41 kDa subu 94.6 0.02 6.8E-07 44.8 3.1 22 8-29 60-81 (353)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.2e-43 Score=263.66 Aligned_cols=167 Identities=41% Similarity=0.716 Sum_probs=146.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+|+|.+|+|||||+++|..+.|...+.+|++.++....+.+++..+++.||||+|+++|..++..|++.++++|+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++++++++.++++|+++||++|.||+++|..|+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999888878899999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 165 ATIYKKI 171 (211)
Q Consensus 165 ~~~~~~~ 171 (211)
+.+....
T Consensus 172 ~~i~~~~ 178 (216)
T 4dkx_A 172 AALPGME 178 (216)
T ss_dssp HHC----
T ss_pred HHHHhhh
Confidence 9886543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.6e-38 Score=236.01 Aligned_cols=173 Identities=45% Similarity=0.835 Sum_probs=160.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 67889999999999999999999999999888888989999888899999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|.+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877777888899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 028237 163 TAATIYKKIQDGV 175 (211)
Q Consensus 163 l~~~~~~~~~~~~ 175 (211)
|.+.+.+......
T Consensus 165 l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 165 MARQIKESMSQQN 177 (206)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999988765544
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=234.24 Aligned_cols=178 Identities=50% Similarity=0.842 Sum_probs=148.9
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 35677899999999999999999999999998888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
++|+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766689999999999998767778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccC
Q 028237 161 IKTAATIYKKIQDGVFDV 178 (211)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~ 178 (211)
.+|.+.+.++........
T Consensus 168 ~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 168 EELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHHTTCC-------
T ss_pred HHHHHHHHHHhhhcccCc
Confidence 999999988776665543
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=218.00 Aligned_cols=173 Identities=51% Similarity=0.908 Sum_probs=159.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 45789999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+.+.++...+++++++||++|.|++++|.+
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887778999999999999888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 028237 163 TAATIYKKIQDGV 175 (211)
Q Consensus 163 l~~~~~~~~~~~~ 175 (211)
|.+.+.++.....
T Consensus 173 l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 173 MAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHhcccc
Confidence 9999998866544
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.9e-36 Score=223.01 Aligned_cols=170 Identities=38% Similarity=0.674 Sum_probs=151.0
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45689999999999999999999999999888888888898888888888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~ 157 (211)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ......+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999888866543 478999999999997 34566788888887 667899999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 028237 158 EAFIKTAATIYKKIQD 173 (211)
Q Consensus 158 ~~~~~l~~~~~~~~~~ 173 (211)
++|++|.+.+.+....
T Consensus 164 ~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 164 QAFQTIARNALKQETE 179 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999877653
No 6
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=216.75 Aligned_cols=167 Identities=34% Similarity=0.545 Sum_probs=150.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 468999999999999999999999988888888766555 4567788888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++++|.+|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 589999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028237 164 AATIYKKIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
++.+.++..
T Consensus 172 ~~~i~~~~~ 180 (206)
T 2bov_A 172 MREIRARKM 180 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHccc
Confidence 999988644
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-35 Score=215.76 Aligned_cols=171 Identities=45% Similarity=0.815 Sum_probs=158.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 57789999999999999999999999999888888989999888899999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028237 163 TAATIYKKIQD 173 (211)
Q Consensus 163 l~~~~~~~~~~ 173 (211)
|.+.+.++...
T Consensus 183 l~~~i~~~~~~ 193 (201)
T 2ew1_A 183 LACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999887644
No 8
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1e-34 Score=211.79 Aligned_cols=174 Identities=57% Similarity=0.959 Sum_probs=160.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 56789999999999999999999999999888888889889888899999889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+.+.+++..+++++++||++|.|++++|.+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998888776678999999999999776778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcc
Q 028237 163 TAATIYKKIQDGVF 176 (211)
Q Consensus 163 l~~~~~~~~~~~~~ 176 (211)
|.+.+.++......
T Consensus 167 l~~~~~~~~~~~~~ 180 (186)
T 2bme_A 167 CARKILNKIESGEL 180 (186)
T ss_dssp HHHHHHHHHHSCC-
T ss_pred HHHHHHHHhhhcCC
Confidence 99999988776554
No 9
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=217.09 Aligned_cols=176 Identities=57% Similarity=0.941 Sum_probs=150.3
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
++++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 35678899999999999999999999999988888888888888888889998999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+++.+++..+++++++||++|.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766789999999999997767778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 028237 161 IKTAATIYKKIQDGVF 176 (211)
Q Consensus 161 ~~l~~~~~~~~~~~~~ 176 (211)
.+|.+.+.++......
T Consensus 180 ~~l~~~i~~~~~~~~~ 195 (200)
T 2o52_A 180 LKCARTILNKIDSGEL 195 (200)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999988776553
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=216.47 Aligned_cols=171 Identities=45% Similarity=0.799 Sum_probs=148.8
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 46778999999999999999999999999888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~~ 160 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..++ +++++||++|.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998877667899999999999987677888999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028237 161 IKTAATIYKKIQ 172 (211)
Q Consensus 161 ~~l~~~~~~~~~ 172 (211)
.+|++.+.++..
T Consensus 185 ~~l~~~i~~~~~ 196 (201)
T 2hup_A 185 LRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999999987644
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.4e-35 Score=215.96 Aligned_cols=172 Identities=49% Similarity=0.916 Sum_probs=129.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 57789999999999999999999999888878888888888888888899899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+..+...+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776668999999999999877777889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 028237 163 TAATIYKKIQDG 174 (211)
Q Consensus 163 l~~~~~~~~~~~ 174 (211)
|.+.+.++..+.
T Consensus 165 l~~~i~~~~~~~ 176 (183)
T 2fu5_C 165 LARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999998876643
No 12
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.1e-34 Score=212.97 Aligned_cols=172 Identities=85% Similarity=1.281 Sum_probs=154.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999999888888888888888899999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999776778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 028237 163 TAATIYKKIQDG 174 (211)
Q Consensus 163 l~~~~~~~~~~~ 174 (211)
|.+.+.++...+
T Consensus 178 l~~~i~~~~~~~ 189 (191)
T 2a5j_A 178 TAKEIYRKIQQG 189 (191)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999876643
No 13
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-34 Score=213.57 Aligned_cols=174 Identities=42% Similarity=0.789 Sum_probs=160.5
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
+.++..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 35678999999999999999999999999988888888888988888888998999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998887766689999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 028237 161 IKTAATIYKKIQDG 174 (211)
Q Consensus 161 ~~l~~~~~~~~~~~ 174 (211)
++|.+.+.++....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 14
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.9e-34 Score=211.22 Aligned_cols=171 Identities=41% Similarity=0.789 Sum_probs=157.4
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 35678999999999999999999999999988888888888888888889889999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999988877666899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028237 162 KTAATIYKKIQ 172 (211)
Q Consensus 162 ~l~~~~~~~~~ 172 (211)
+|.+.+.++..
T Consensus 178 ~l~~~i~~~~~ 188 (189)
T 2gf9_A 178 RLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 15
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=211.22 Aligned_cols=171 Identities=46% Similarity=0.826 Sum_probs=157.9
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 46778999999999999999999999999988888888898888888889999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|.
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888776667899999999999987667788889999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028237 162 KTAATIYKKIQ 172 (211)
Q Consensus 162 ~l~~~~~~~~~ 172 (211)
+|.+.+.++..
T Consensus 181 ~l~~~i~~~~~ 191 (193)
T 2oil_A 181 TVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.9e-34 Score=208.85 Aligned_cols=168 Identities=65% Similarity=1.088 Sum_probs=154.8
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 35678999999999999999999999999888888888888888888899989999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988887767899999999999977777788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 162 KTAATIYK 169 (211)
Q Consensus 162 ~l~~~~~~ 169 (211)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988754
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.4e-34 Score=208.02 Aligned_cols=167 Identities=36% Similarity=0.692 Sum_probs=146.3
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 46788999999999999999999999999888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888776656899999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 162 KTAATIY 168 (211)
Q Consensus 162 ~l~~~~~ 168 (211)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 18
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-35 Score=216.36 Aligned_cols=171 Identities=42% Similarity=0.797 Sum_probs=158.3
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 36788999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....++.+.+++..+++++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028237 162 KTAATIYKKIQ 172 (211)
Q Consensus 162 ~l~~~~~~~~~ 172 (211)
+|.+.+.++..
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999988754
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=6.6e-34 Score=206.53 Aligned_cols=168 Identities=39% Similarity=0.738 Sum_probs=153.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999999888888888888888888999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999988877678999999999999877777889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 163 TAATIYKK 170 (211)
Q Consensus 163 l~~~~~~~ 170 (211)
|.+.+.+.
T Consensus 169 l~~~~~~~ 176 (181)
T 2efe_B 169 IARRLPRV 176 (181)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhc
Confidence 99876543
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=206.36 Aligned_cols=170 Identities=45% Similarity=0.772 Sum_probs=155.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 67789999999999999999999999998888889989999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++|++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999998887654 47999999999999887778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028237 163 TAATIYKKIQD 173 (211)
Q Consensus 163 l~~~~~~~~~~ 173 (211)
|.+.+.+...+
T Consensus 165 l~~~~~~~~~~ 175 (181)
T 3tw8_B 165 ITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999887654
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.4e-34 Score=208.24 Aligned_cols=170 Identities=32% Similarity=0.455 Sum_probs=152.7
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....++|+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN 79 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence 6677889999999999999999999999988888888877777 777788999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999988866554 58999999999999887888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 160 FIKTAATIYKKI 171 (211)
Q Consensus 160 ~~~l~~~~~~~~ 171 (211)
|.+|++.+.+..
T Consensus 160 ~~~l~~~~~~~~ 171 (181)
T 3t5g_A 160 FRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999887653
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=8.4e-34 Score=203.68 Aligned_cols=165 Identities=41% Similarity=0.774 Sum_probs=152.2
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999999998888888889998888898999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....++.+.++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999776677888899999999999999999999999999999
Q ss_pred HHHHH
Q 028237 163 TAATI 167 (211)
Q Consensus 163 l~~~~ 167 (211)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98754
No 23
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-33 Score=208.86 Aligned_cols=169 Identities=35% Similarity=0.657 Sum_probs=152.6
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEE--------------------------
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP-------------------------- 54 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 54 (211)
|+++..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 788899999999999999999999999999988888888888888888777655
Q ss_pred -----------EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237 55 -----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123 (211)
Q Consensus 55 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 123 (211)
+.+.+||+||++.+..++..+++.+|++|+|||++++.+++.+..|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence 899999999999999999999999999999999999999999999998887765 499999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
.....+..++++.+++..+++++++||++|.|++++|++|.+.+.++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 4556678899999999999999999999999999999999999988764
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.4e-33 Score=202.62 Aligned_cols=166 Identities=41% Similarity=0.733 Sum_probs=153.8
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 35678999999999999999999999999888888888999988889999989999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+++..++.+.+++..+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999998887667899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHH
Q 028237 162 KTAATI 167 (211)
Q Consensus 162 ~l~~~~ 167 (211)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998865
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.5e-34 Score=205.76 Aligned_cols=167 Identities=48% Similarity=0.883 Sum_probs=145.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
+|||++++.+++.+..|+..+......+.|+++|+||+|+. .+....++.+.+++..+++++++||++|.|++++|.+|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998888776789999999999994 44567888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 164 AATIYKKI 171 (211)
Q Consensus 164 ~~~~~~~~ 171 (211)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99887653
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=205.07 Aligned_cols=168 Identities=45% Similarity=0.836 Sum_probs=145.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++..++|+|+|.+|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 567899999999999999999999998885 4667788888888888889989999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.|++++|.
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988877667899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028237 162 KTAATIYKK 170 (211)
Q Consensus 162 ~l~~~~~~~ 170 (211)
+|.+.+.++
T Consensus 167 ~l~~~~~~~ 175 (180)
T 2g6b_A 167 AIAKELKRR 175 (180)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999988654
No 27
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-34 Score=210.14 Aligned_cols=168 Identities=38% Similarity=0.671 Sum_probs=153.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 56789999999999999999999999998888888889998888888888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999988776668999999999999776677889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 163 TAATIYKK 170 (211)
Q Consensus 163 l~~~~~~~ 170 (211)
|.+.+.+.
T Consensus 180 l~~~i~~~ 187 (192)
T 2fg5_A 180 ISRQIPPL 187 (192)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhh
Confidence 99876543
No 28
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.8e-34 Score=215.73 Aligned_cols=173 Identities=38% Similarity=0.728 Sum_probs=154.1
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE----------EEEEEEEeCCCcchhhhh
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK----------PIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~ 71 (211)
.++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||+||++.+..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 5678999999999999999999999999887777777777777777777765 789999999999999999
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (211)
+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999988887765543 58999999999999877777888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcC
Q 028237 151 KTAQNVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~~~~~~~ 174 (211)
++|.|++++|++|.+.+.++....
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~~ 204 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQC 204 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999998876643
No 29
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=209.62 Aligned_cols=168 Identities=45% Similarity=0.776 Sum_probs=147.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 46689999999999999999999999988888888888899888899999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~ 161 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|++++|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998888776678999999999999877777888888998874 78999999999999999999
Q ss_pred HHHHHHHHH
Q 028237 162 KTAATIYKK 170 (211)
Q Consensus 162 ~l~~~~~~~ 170 (211)
+|.+.+.++
T Consensus 183 ~l~~~i~~~ 191 (192)
T 2il1_A 183 KLVDDILKK 191 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988754
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.9e-33 Score=206.12 Aligned_cols=172 Identities=38% Similarity=0.713 Sum_probs=155.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE-EEEEEECCE---------EEEEEEEeCCCcchhhhhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMITIDNK---------PIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~ 72 (211)
++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ...+.+.+. .+.+.+||+||++.+..++
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 567899999999999999999999999988888888888887 666666665 7899999999999999999
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (211)
..+++.+|++|+|||++++.+++.+..|+..+..+.. .+.|+++|+||+|+.+.+.+..++++.++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999999999999999998877665 689999999999998766778889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC
Q 028237 152 TAQNVEEAFIKTAATIYKKIQDG 174 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~~~~~~~~~ 174 (211)
+|.|++++|.+|.+.+.++..+.
T Consensus 168 ~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999998876643
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=6.4e-34 Score=204.02 Aligned_cols=166 Identities=35% Similarity=0.599 Sum_probs=151.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 45789999999999999999999999999888888888888888888999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999988887665 58999999999999876677888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 163 TAATIYK 169 (211)
Q Consensus 163 l~~~~~~ 169 (211)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 32
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-33 Score=209.55 Aligned_cols=172 Identities=46% Similarity=0.869 Sum_probs=154.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 35579999999999999999999999998888888888888888899999889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+ .......++.+.++...+++++++||++|.|++++|.+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998888776668999999999999 44556788889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 028237 163 TAATIYKKIQDGV 175 (211)
Q Consensus 163 l~~~~~~~~~~~~ 175 (211)
|.+.+.++.....
T Consensus 176 l~~~~~~~~~~~~ 188 (213)
T 3cph_A 176 LAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhh
Confidence 9999988875443
No 33
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=201.77 Aligned_cols=162 Identities=40% Similarity=0.759 Sum_probs=149.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999998888888889998888888999899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
||++++.+++.+..|+..+......+.|+++++||+|+.+. ..+..++.+.+++..+++++++||++|.|++++|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999888776678999999999999654 567788889999999999999999999999999999
Q ss_pred HHHHH
Q 028237 163 TAATI 167 (211)
Q Consensus 163 l~~~~ 167 (211)
|.+.+
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 98754
No 34
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.6e-33 Score=203.93 Aligned_cols=165 Identities=33% Similarity=0.543 Sum_probs=151.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999998888888877776 777788998999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC-CCCCHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK-TAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~g~~v~~~~~ 161 (211)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+ +|.|++++|.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 9999999999999999998886644 3689999999999998877888999999999999999999999 9999999999
Q ss_pred HHHHHHHH
Q 028237 162 KTAATIYK 169 (211)
Q Consensus 162 ~l~~~~~~ 169 (211)
+|.+.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998875
No 35
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=202.27 Aligned_cols=168 Identities=30% Similarity=0.448 Sum_probs=138.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--hhhhhHHhhcCCcE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--FRSITRSYYRGAAG 81 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 81 (211)
+..++|+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457899999999999999999999887765544 457777777888899899999999999987 56778888999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 2579999999999998777788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028237 161 IKTAATIYKKIQ 172 (211)
Q Consensus 161 ~~l~~~~~~~~~ 172 (211)
++|.+.+.++..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999999877654
No 36
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=210.07 Aligned_cols=168 Identities=38% Similarity=0.669 Sum_probs=139.9
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999999888888888888888888999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC------CCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA------HRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++.+.++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999988877766689999999999995 3456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYK 169 (211)
Q Consensus 156 v~~~~~~l~~~~~~ 169 (211)
++++|.+|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=6.1e-33 Score=202.67 Aligned_cols=167 Identities=33% Similarity=0.576 Sum_probs=146.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999998887777775 44555667788989999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....+..+.++...+++++++||++|.|++++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988877554 5899999999999974 4567888999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028237 164 AATIYKKIQD 173 (211)
Q Consensus 164 ~~~~~~~~~~ 173 (211)
.+.+.+....
T Consensus 161 ~~~~~~~~~~ 170 (189)
T 4dsu_A 161 VREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9999887654
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=7e-33 Score=200.42 Aligned_cols=166 Identities=36% Similarity=0.656 Sum_probs=147.2
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999999888888889998888899999889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~ 157 (211)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ......++++.+++ ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988876654 578999999999997 45567888888888 567899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYK 169 (211)
Q Consensus 158 ~~~~~l~~~~~~ 169 (211)
++|++|++.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 39
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.8e-34 Score=209.24 Aligned_cols=164 Identities=30% Similarity=0.468 Sum_probs=143.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4578999999999999999999999988877777766555 345667888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....++...++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888877766543 4789999999999975 45667888899999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 162 KTAATIYK 169 (211)
Q Consensus 162 ~l~~~~~~ 169 (211)
+|.+.+.+
T Consensus 164 ~l~~~~~~ 171 (199)
T 2gf0_A 164 ELLTLETR 171 (199)
T ss_dssp HHHHHCSS
T ss_pred HHHHHHhh
Confidence 99886644
No 40
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=3.4e-34 Score=213.51 Aligned_cols=169 Identities=30% Similarity=0.593 Sum_probs=145.2
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 6667789999999999999999999999988877778876555 455667888899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCC--------CCHHHHHHHHHHcCC-cEEEEec
Q 028237 81 GALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRA--------VSTEEGEQFAKEHGL-IFMEASA 150 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa 150 (211)
++|+|||++++.+++.+. .|+..+..+. .+.|+++|+||+|+.+... +..++++.++...++ +++++||
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999987 7888887664 3899999999999865432 367888899999986 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~~~~ 171 (211)
++|.|++++|++|++.+.+..
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999887653
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.2e-33 Score=200.85 Aligned_cols=168 Identities=34% Similarity=0.567 Sum_probs=151.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45789999999999999999999999888888888777765 66778888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999988885443 468999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028237 163 TAATIYKKIQ 172 (211)
Q Consensus 163 l~~~~~~~~~ 172 (211)
|.+.+.+...
T Consensus 166 l~~~~~~~~~ 175 (181)
T 2fn4_A 166 LVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4.1e-33 Score=204.06 Aligned_cols=166 Identities=41% Similarity=0.780 Sum_probs=148.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-hhhHHhhcCCcEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~ 82 (211)
...+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 457999999999999999999999999988888888888888889999989999999999999998 8899999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC---CCHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA---QNVEE 158 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g---~~v~~ 158 (211)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++.+.+++..+++++++||+++ .|+.+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999999887775 468999999999999877778888999999999999999999999 99999
Q ss_pred HHHHHHHHHHH
Q 028237 159 AFIKTAATIYK 169 (211)
Q Consensus 159 ~~~~l~~~~~~ 169 (211)
+|.+|++.+.+
T Consensus 178 l~~~l~~~i~~ 188 (189)
T 1z06_A 178 IFMTLAHKLKS 188 (189)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 43
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=204.82 Aligned_cols=165 Identities=30% Similarity=0.486 Sum_probs=143.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999998888888877666 455778888999999999999988775 6799999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec-CCCCCHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA-KTAQNVEE 158 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~g~~v~~ 158 (211)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++..+++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 999999999999999999988876642 58999999999999877778889999999999999999999 89999999
Q ss_pred HHHHHHHHHHH
Q 028237 159 AFIKTAATIYK 169 (211)
Q Consensus 159 ~~~~l~~~~~~ 169 (211)
+|++|++.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 44
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.7e-33 Score=202.03 Aligned_cols=164 Identities=41% Similarity=0.744 Sum_probs=151.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999999988888888889988889999989999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999888777666899999999999987777788889999999999999999999999999999998
Q ss_pred HHHH
Q 028237 165 ATIY 168 (211)
Q Consensus 165 ~~~~ 168 (211)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 8653
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.4e-33 Score=201.46 Aligned_cols=165 Identities=27% Similarity=0.416 Sum_probs=135.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-hhHHhhcCCcEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL 84 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 84 (211)
.+||+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877777767767888888888999999999999999998876 78888999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877654 489999999999998777888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 164 AATIYKK 170 (211)
Q Consensus 164 ~~~~~~~ 170 (211)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988754
No 46
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=209.43 Aligned_cols=171 Identities=29% Similarity=0.485 Sum_probs=145.7
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4455689999999999999999999999999888888877766 566666777899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+.+.+++..+++++++||++|.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999988876543 57899999999999877788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028237 160 FIKTAATIYKKIQ 172 (211)
Q Consensus 160 ~~~l~~~~~~~~~ 172 (211)
|.+|.+.+.+...
T Consensus 178 ~~~l~~~i~~~~~ 190 (201)
T 3oes_A 178 FTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhh
Confidence 9999998876643
No 47
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=206.66 Aligned_cols=168 Identities=27% Similarity=0.387 Sum_probs=145.2
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-hhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 81 (211)
.+..++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 45679999999999999999999986555444445556666677788899999999999999988765 78889999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 9999999999999999999988876654 589999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028237 161 IKTAATIYKK 170 (211)
Q Consensus 161 ~~l~~~~~~~ 170 (211)
.+|++.+.+.
T Consensus 180 ~~l~~~i~~~ 189 (195)
T 3cbq_A 180 EGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988643
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.5e-33 Score=204.05 Aligned_cols=167 Identities=35% Similarity=0.530 Sum_probs=147.9
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+||+||++.+..++..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999888777777878888888888876 67999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCc-EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHAN--ANMT-IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~ 158 (211)
+|+|||++++.+++.+..|+..+..... .+.| +++|+||+|+.+.+.+..++++.+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888866432 2455 899999999987677788899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 159 AFIKTAATIYK 169 (211)
Q Consensus 159 ~~~~l~~~~~~ 169 (211)
+|.+|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 49
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=202.88 Aligned_cols=170 Identities=37% Similarity=0.523 Sum_probs=148.9
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ..++..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 4455679999999999999999999999998888888866655 55577888899999999999988 778899999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEE 158 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~-~v~~ 158 (211)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|. |+++
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence 99999999999999999999988877553 589999999999998767788899999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHh
Q 028237 159 AFIKTAATIYKKIQ 172 (211)
Q Consensus 159 ~~~~l~~~~~~~~~ 172 (211)
+|++|++.+.++.+
T Consensus 181 l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 181 IFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999987643
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.1e-32 Score=202.58 Aligned_cols=166 Identities=27% Similarity=0.537 Sum_probs=147.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456799999999999999999999999988888888777765 4677888899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC--CCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHH
Q 028237 83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEE 158 (211)
Q Consensus 83 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~ 158 (211)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++++.+++..+++ ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 56777776553 57999999999999653 567789999999999998 99999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 159 AFIKTAATIYKK 170 (211)
Q Consensus 159 ~~~~l~~~~~~~ 170 (211)
+|++|.+.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (194)
T 3reg_A 178 VFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.3e-32 Score=196.88 Aligned_cols=163 Identities=35% Similarity=0.562 Sum_probs=144.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999988877777766555 45567888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++...++++.+++..+++++++||++|.|++++|++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 999999999999999988877654 5899999999999987777888899999999999999999999999999999999
Q ss_pred HHHHH
Q 028237 165 ATIYK 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+.+.+
T Consensus 163 ~~i~~ 167 (168)
T 1u8z_A 163 REIRA 167 (168)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98753
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.8e-32 Score=198.71 Aligned_cols=167 Identities=34% Similarity=0.545 Sum_probs=150.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988877777766555 4556788888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.++++++++||+++.|++++|++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877664 589999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028237 164 AATIYKKIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
.+.+.++..
T Consensus 176 ~~~i~~~~~ 184 (187)
T 2a9k_A 176 MREIRARKM 184 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999987654
No 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=4.8e-33 Score=201.96 Aligned_cols=169 Identities=35% Similarity=0.641 Sum_probs=136.5
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 5668999999999999999999999999888888888888888878776 567899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEecCCCCC
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAH-RRAVSTEEGEQFAK-EHGLIFMEASAKTAQN 155 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~ 155 (211)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.+++ ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876653 5899999999999954 34567888888888 5678899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKKI 171 (211)
Q Consensus 156 v~~~~~~l~~~~~~~~ 171 (211)
++++|++|.+.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 54
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.5e-32 Score=197.84 Aligned_cols=166 Identities=16% Similarity=0.294 Sum_probs=141.7
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....+||+|+|.+|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+||++|++. ..+++++|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 666678999999999999999999999998876 667766544 66677888899999999999886 45788899
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEecCCCC
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQ 154 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~ 154 (211)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++.++... +++++++||++|.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 99999999999999999998766655433 589999999999994 44567788889898876 6899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 028237 155 NVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~~~~ 173 (211)
|++++|++|++.+.+....
T Consensus 155 ~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999877553
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.8e-32 Score=196.08 Aligned_cols=163 Identities=34% Similarity=0.557 Sum_probs=146.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999988877777755444 66778888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++...++.+.+++..+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999888876554 5899999999999977777788889999999999999999999999999999999
Q ss_pred HHHHH
Q 028237 165 ATIYK 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
No 56
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.6e-33 Score=208.77 Aligned_cols=172 Identities=28% Similarity=0.512 Sum_probs=116.1
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEECCE--EEEEEEEeCCCcchhhhhhHHhhc
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITIDNK--PIKLQIWDTAGQESFRSITRSYYR 77 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 77 (211)
.....++|+|+|.+|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+..++..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456789999999999999999999998 777777778777787888888876 899999999999999999999999
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCC-
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKT- 152 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~- 152 (211)
.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.+++..+++++++||++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence 99999999999999999999999999988765 6899999999999977 667788999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q 028237 153 AQNVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~~~~~ 173 (211)
|.|++++|++|.+.+.+....
T Consensus 176 ~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 176 GKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999998876543
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.6e-32 Score=196.57 Aligned_cols=162 Identities=35% Similarity=0.591 Sum_probs=144.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999988888888876665 35566788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~l 163 (211)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999999999888876543 58999999999999877777888899999887 7899999999999999999999
Q ss_pred HHHHH
Q 028237 164 AATIY 168 (211)
Q Consensus 164 ~~~~~ 168 (211)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98763
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-32 Score=200.24 Aligned_cols=165 Identities=48% Similarity=0.835 Sum_probs=150.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 46899999999999999999999999988888888999988889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ..+..++.+.+++..+++++++||+++.|++++|++|
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999888866543 5799999999999954 4567888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 164 AATIYKK 170 (211)
Q Consensus 164 ~~~~~~~ 170 (211)
.+.+.+.
T Consensus 173 ~~~~~~~ 179 (195)
T 1x3s_A 173 VEKIIQT 179 (195)
T ss_dssp HHHHHTS
T ss_pred HHHHHhh
Confidence 9988754
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.7e-32 Score=196.38 Aligned_cols=163 Identities=27% Similarity=0.411 Sum_probs=124.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|.+|+|||||+++|.+...... .++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 57999999999999999999987665433 33435554 45677889999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887654 36899999999999988778889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 028237 165 ATIYKK 170 (211)
Q Consensus 165 ~~~~~~ 170 (211)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=203.70 Aligned_cols=168 Identities=25% Similarity=0.352 Sum_probs=141.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhhHHhhcCC
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGA 79 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~ 79 (211)
++..+||+|+|.+|+|||||+++|.+... ...+ ++++.++....+.+++..+.+.+||++|.+. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 45679999999999999999999996443 3333 3456677777788899999999999999887 556777888999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237 80 AGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~ 158 (211)
|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988776543 25799999999999977667788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 159 AFIKTAATIYKKI 171 (211)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (211)
+|.+|++.+..+.
T Consensus 193 lf~~l~~~i~~~~ 205 (211)
T 2g3y_A 193 LFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 61
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.2e-32 Score=197.66 Aligned_cols=161 Identities=17% Similarity=0.324 Sum_probs=142.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|.+|||||||+++|++..+...+.++ +..+ ...+.+++..+.+.+||++|++.+. +++.+|+++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 45799999999999999999999999988877776 4344 4778889999999999999998877 788899999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEA 159 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~ 159 (211)
+|||++++.+++.+..|+..+..... .+.|+++++||+|+. +.+.+..++++.+++..+ ++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 99999999999999999999877654 579999999999994 456678899999999987 89999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 160 FIKTAATIYKKI 171 (211)
Q Consensus 160 ~~~l~~~~~~~~ 171 (211)
|.+|++.+.+..
T Consensus 171 f~~l~~~i~~~~ 182 (184)
T 3ihw_A 171 FQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 62
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-32 Score=198.76 Aligned_cols=164 Identities=27% Similarity=0.524 Sum_probs=144.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 45679999999999999999999999988888888766655 45566777889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028237 83 LLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..+++..++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 6888887664 38999999999999653 35778889999999997 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~ 168 (211)
||++|.|++++|++|++.+.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998765
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=199.83 Aligned_cols=168 Identities=26% Similarity=0.464 Sum_probs=139.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45679999999999999999999999888777777766554 45677888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEE
Q 028237 83 LLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
|+|||++++.+++.+. .|+..+..+.. +.|+++|+||+|+.+ .+.+..++...++...++ +++++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999987 68888876653 899999999999965 245678889999999887 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 149 SAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
||++|.|++++|++|++.+.+...
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999987654
No 64
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.9e-32 Score=204.59 Aligned_cols=167 Identities=25% Similarity=0.455 Sum_probs=145.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3468999999999999999999999999888888877776 456667788899999999999999999999999999999
Q ss_pred EEEECCCHhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++. +..|+..+.... .+.|+++|+||+|+.+. +.+..++++.+++..++ +++++|
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 9999999999998 688988887765 48999999999999652 56888999999999999 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHh
Q 028237 150 AKTAQN-VEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 150 a~~g~~-v~~~~~~l~~~~~~~~~ 172 (211)
|++|.| ++++|.+|++.+.+...
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC---
T ss_pred cCCCcccHHHHHHHHHHHHhccCc
Confidence 999998 99999999998876644
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.2e-32 Score=197.04 Aligned_cols=165 Identities=26% Similarity=0.486 Sum_probs=143.1
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 46789999999999999999999999998888888877666 44567788889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEE
Q 028237 83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (211)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++++.+++..+ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67888876654 48999999999999642 4577888999999887 689999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q 028237 149 SAK-TAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 149 sa~-~g~~v~~~~~~l~~~~~~ 169 (211)
||+ ++.|++++|+.+.+.+.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999988753
No 66
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=8.9e-31 Score=193.28 Aligned_cols=173 Identities=53% Similarity=0.880 Sum_probs=153.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 36789999999999999999999999998888888888888888899999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
++|||+++..+++.+..|+..+......+.|+++++||+|+.+.......+++.++...++.++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999998888888776655567899999999999776677788899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 028237 163 TAATIYKKIQDGV 175 (211)
Q Consensus 163 l~~~~~~~~~~~~ 175 (211)
|.+.+.+......
T Consensus 162 l~~~~~~~~~~~~ 174 (199)
T 2f9l_A 162 ILTEIYRIVSQKQ 174 (199)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcc
Confidence 9999988765443
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.4e-32 Score=202.88 Aligned_cols=172 Identities=31% Similarity=0.465 Sum_probs=148.8
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+..+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+... +..+.+.+||+||++.+..++..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999988887777887777776666554 344899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~ 161 (211)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..++.+.++...+++++++||++|.|++++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999999887776799999999999987767888888999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 028237 162 KTAATIYKKIQDG 174 (211)
Q Consensus 162 ~l~~~~~~~~~~~ 174 (211)
+|.+.+.+.....
T Consensus 168 ~l~~~~~~~~~~~ 180 (218)
T 4djt_A 168 HLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHCCTTCC
T ss_pred HHHHHHhcccccc
Confidence 9999987765443
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7.8e-31 Score=191.95 Aligned_cols=165 Identities=34% Similarity=0.578 Sum_probs=135.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 358999999999999999999999988777777755444 4567788888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....++++++++..+++++++||++|.|++++|.+|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999888876654 5799999999999976 4567888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 164 AATIYKKI 171 (211)
Q Consensus 164 ~~~~~~~~ 171 (211)
.+.+.+..
T Consensus 178 ~~~~~~~~ 185 (190)
T 3con_A 178 VREIRQYR 185 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99987653
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=8.1e-31 Score=187.10 Aligned_cols=162 Identities=33% Similarity=0.581 Sum_probs=143.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999988777777755444 56677888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
||++++.+++.+..|+..+..... .+.|+++++||+|+.+ .....++.+++++..+++++++||++|.|++++|.+|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876654 4799999999999976 45668888999999999999999999999999999999
Q ss_pred HHHHH
Q 028237 165 ATIYK 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88753
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=4.3e-31 Score=195.30 Aligned_cols=164 Identities=30% Similarity=0.543 Sum_probs=144.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45789999999999999999999999988888888776664 34677888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++++.+++..++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 56777776654 48999999999999664 45677888999999988 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 028237 150 AKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~~~ 169 (211)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987753
No 71
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=199.26 Aligned_cols=165 Identities=26% Similarity=0.490 Sum_probs=143.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45689999999999999999999999999888888877666 44566778889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CcEEEE
Q 028237 83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHG-LIFMEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 148 (211)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+ .+.+..++++.+++..+ ++++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 67888887654 4799999999999964 24577888999999887 689999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q 028237 149 SAK-TAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 149 sa~-~g~~v~~~~~~l~~~~~~ 169 (211)
||+ ++.|++++|..|++.+..
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998764
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-31 Score=191.51 Aligned_cols=161 Identities=32% Similarity=0.482 Sum_probs=141.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 58999999999999999999999888777777766555 34566788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237 86 YDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l 163 (211)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+.+.++...+++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence 999999999998888888766543 479999999999997777777888889999999999999999999999999999
Q ss_pred HHHH
Q 028237 164 AATI 167 (211)
Q Consensus 164 ~~~~ 167 (211)
.+.+
T Consensus 162 ~~~~ 165 (172)
T 2erx_A 162 LNLE 165 (172)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8754
No 73
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=4.5e-31 Score=192.27 Aligned_cols=162 Identities=28% Similarity=0.564 Sum_probs=142.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999988877777766555 4556788889999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEec
Q 028237 85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASA 150 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 150 (211)
|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..++...+++..++ +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 68887776543 8999999999998653 45677888899999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~ 168 (211)
++|.|++++|.+|.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHh
Confidence 999999999999998775
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=3e-32 Score=200.29 Aligned_cols=168 Identities=19% Similarity=0.244 Sum_probs=136.6
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------CCCceeEEEEEEE-EECCEEEEEEEEeCCCcchhh
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DLTIGVEFGARMI-TIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++..+||+|+|.+|+|||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3567899999999999999999766654 33332 2344444444444 556778999999999999999
Q ss_pred hhhHHhhcCCcEEEEEEECC------CHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028237 70 SITRSYYRGAAGALLVYDIT------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL 143 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (211)
.++..+++++|++|+|||++ +..+++.+..|+..+. ....+.|+++|+||+|+.+ .+..++++.+++..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 4566677777776652 2235899999999999965 3778899999999999
Q ss_pred -cEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237 144 -IFMEASAKTAQNVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 144 -~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~ 173 (211)
+++++||++|.|++++|++|.+.+.++..+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988764
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=214.04 Aligned_cols=167 Identities=52% Similarity=0.921 Sum_probs=142.8
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46789999999999999999999999988888888888888888899999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|.+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999987776678999999999999877667677788899999999999999999999999999
Q ss_pred HHHHHHH
Q 028237 163 TAATIYK 169 (211)
Q Consensus 163 l~~~~~~ 169 (211)
|.+.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 9886643
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-31 Score=194.57 Aligned_cols=165 Identities=28% Similarity=0.534 Sum_probs=138.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999999888777776666643 4678888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 56777776654 48999999999999654 45677888899999888 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 028237 150 AKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~~~~ 170 (211)
|++|.|++++|++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2.1e-32 Score=198.78 Aligned_cols=166 Identities=28% Similarity=0.578 Sum_probs=126.3
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+....+||+|+|.+|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 56667899999999999999999999998887777776554442 23445666788999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCC----------CCHHHHHHHHHHcCC-cEEEE
Q 028237 81 GALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA 148 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (211)
++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... +..++++.+++..++ +++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999987 6888877664 3899999999999865432 467888899999886 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~ 168 (211)
||++|.|++++|++|.+.+.
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998763
No 78
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.98 E-value=5.6e-31 Score=196.54 Aligned_cols=164 Identities=28% Similarity=0.568 Sum_probs=123.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 368999999999999999999999888777777765444 5567788889999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEec
Q 028237 85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASA 150 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 150 (211)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..++++.+++..++ +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999987 6888876654 47999999999999654 25677888999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~~~ 170 (211)
++|.|++++|.+|.+.+.+.
T Consensus 191 ~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=1.1e-30 Score=191.89 Aligned_cols=167 Identities=25% Similarity=0.370 Sum_probs=138.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhhHHhhcCCc
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAA 80 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 80 (211)
+..+||+|+|.+|+|||||+++|.+... ...+ ++++.++....+.+++..+.+.+||++|.+. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3568999999999999999999996432 3333 3456677777788899999999999999876 5567788899999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 81 GALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776653 357999999999999766677788888888889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 160 FIKTAATIYKKI 171 (211)
Q Consensus 160 ~~~l~~~~~~~~ 171 (211)
|.+|++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886654
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.6e-31 Score=200.38 Aligned_cols=165 Identities=30% Similarity=0.566 Sum_probs=147.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 35679999999999999999999888877777888888999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+...+++..+++++++||++|.|++++|.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887765 4899999999999976443 22566778888999999999999999999999
Q ss_pred HHHHHHHH
Q 028237 163 TAATIYKK 170 (211)
Q Consensus 163 l~~~~~~~ 170 (211)
|.+.+...
T Consensus 169 l~~~l~~~ 176 (221)
T 3gj0_A 169 LARKLIGD 176 (221)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988655
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=9.9e-31 Score=193.81 Aligned_cols=162 Identities=28% Similarity=0.542 Sum_probs=138.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|.+|+|||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 3468999999999999999999999988877777754 444566777888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...+++..++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 6888777665 589999999999986532 2677888899999986 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028237 150 AKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~ 167 (211)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 82
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.6e-29 Score=185.46 Aligned_cols=165 Identities=54% Similarity=0.900 Sum_probs=150.4
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 56789999999999999999999999999888899999999888999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~ 162 (211)
++|+|+++..+++.+..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.++.++|++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999988888888776655567899999999999776667788899999999999999999999999999999
Q ss_pred HHHHH
Q 028237 163 TAATI 167 (211)
Q Consensus 163 l~~~~ 167 (211)
|.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=4.5e-31 Score=194.41 Aligned_cols=163 Identities=16% Similarity=0.290 Sum_probs=130.2
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
....++|+|+|.+|||||||+++|.+..+.. .+.++.+.... .+. ...+.+.+||+||++.+..++..+++.+|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 3567899999999999999999999999887 77777774443 333 345899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHHhcC--------CCCcEEEEEecCCCCCCCCCCHHHHHHH------HHHcCCcEEE
Q 028237 82 ALLVYDITRRETFNHLASWLEDARQHAN--------ANMTIMLIGNKCDLAHRRAVSTEEGEQF------AKEHGLIFME 147 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~ 147 (211)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ..+++... ++..++++++
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEE
Confidence 9999999999999999888887755422 278999999999996542 22322221 1446778999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
+||++|.|++++|++|.+.+.+..
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1e-30 Score=186.72 Aligned_cols=157 Identities=19% Similarity=0.339 Sum_probs=122.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|.+|+|||||+++|.+..+.. +.++.+. ....+.. ..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887754 4555553 2333333 3478999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHH
Q 028237 87 DITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~~~ 160 (211)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....++.... ...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999888887776542 358999999999999653 2333332221 1234579999999999999999
Q ss_pred HHHHHHHHHH
Q 028237 161 IKTAATIYKK 170 (211)
Q Consensus 161 ~~l~~~~~~~ 170 (211)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999877543
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=184.00 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=130.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
...++|+|+|.+|+|||||+++|.+.. +...+.++.+ +....+.+++ +.+.+||+||++.+..++..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 357899999999999999999999887 5555666655 3444555554 7899999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCC
Q 028237 83 LLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQ 154 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~ 154 (211)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....+++..+.. ..+++++++||++|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999998888766543 4899999999999965 345566666553 235689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATIYK 169 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~ 169 (211)
|++++|++|.+.+.+
T Consensus 173 gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 173 GLQEGVDWLQDQIQT 187 (190)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987654
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=5e-29 Score=181.74 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=129.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.+.. ...+.++.+.. ...+.++ .+.+.+||+||++.+..++..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999887 56666665644 3445555 478999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988887776543 258999999999999653 33444433322 245679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.4e-29 Score=185.27 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=129.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++.. +... .+.+.+||+||++.+..++..+++.+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 357899999999999999999999998887777877776643 3333 588999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ....++..... ..+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999998887776543 258999999999999653 23333322211 234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYK 169 (211)
Q Consensus 158 ~~~~~l~~~~~~ 169 (211)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.5e-29 Score=184.24 Aligned_cols=155 Identities=22% Similarity=0.264 Sum_probs=127.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|.+..+.. +.++.+.+ ...+.+++ +.+.+||+||++.+..++..+++.+|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999987753 44554543 45566666 889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEecC
Q 028237 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------------HGLIFMEASAK 151 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~ 151 (211)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.++... .+++++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999888876543 25899999999999965 4566666665543 34679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028237 152 TAQNVEEAFIKTAAT 166 (211)
Q Consensus 152 ~g~~v~~~~~~l~~~ 166 (211)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999999764
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=4.4e-30 Score=184.54 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=126.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+.. +.++.+.. ...+.++ ...+.+||+||++.+..++..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 46899999999999999999999887753 44554433 3445555 4789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~g~~v~~ 158 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ...++... +...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 9999999999988888877655432 589999999999996532 23333222 223456799999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 159 AFIKTAATIYK 169 (211)
Q Consensus 159 ~~~~l~~~~~~ 169 (211)
+|++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=8.6e-30 Score=187.95 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=122.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|||||||+++|.+..+. .+.++.+.+ ...+.+++ +.+.+|||||++.+..++..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999988764 344554444 34556666 799999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCcEE
Q 028237 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIFM 146 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (211)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++..++.. .+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999988876543 25899999999999965 4667777776653 345799
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 028237 147 EASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~ 166 (211)
++||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-29 Score=181.68 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=125.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.+..++..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 35789999999999999999999988776 455555533 33445554 89999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++..... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988876653 25899999999999965 234555554432 235689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
++|++|++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876443
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=3.3e-30 Score=189.26 Aligned_cols=158 Identities=18% Similarity=0.314 Sum_probs=119.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|..+.+.. +.++.+ +....+... .+.+.+||+||++.+..++..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 457899999999999999999999877653 334434 333344444 488999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....++..... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988887775543 258999999999999653 23333322211 234579999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 158 EAFIKTAATIY 168 (211)
Q Consensus 158 ~~~~~l~~~~~ 168 (211)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=6e-29 Score=180.85 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=124.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+|+|++|+|||||+++|.+..+. .+.++.+.+ ...+.++ .+.+.+||+||++.+..++..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987542 334444433 3445555 478999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.. ..+++..... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999888887764432 2589999999999996542 3333333221 234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876543
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=3.8e-28 Score=192.18 Aligned_cols=163 Identities=29% Similarity=0.558 Sum_probs=143.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 358999999999999999999999988888887765555 5567788889999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEec
Q 028237 85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASA 150 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 150 (211)
|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..+++..++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 67777766544 8999999999998543 45778889999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~~ 169 (211)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987753
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=5e-29 Score=181.17 Aligned_cols=156 Identities=27% Similarity=0.363 Sum_probs=125.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+||+||++.+..++..+++.+|++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3468999999999999999999999877 44455555443 3444554 88999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988887776543 358999999999999652 34455544432 234579999999999999
Q ss_pred HHHHHHHHH
Q 028237 158 EAFIKTAAT 166 (211)
Q Consensus 158 ~~~~~l~~~ 166 (211)
++|++|.+.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999764
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=7.1e-30 Score=186.19 Aligned_cols=164 Identities=21% Similarity=0.400 Sum_probs=121.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (211)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.+ .+..+.+.+||++|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 455556777777776665544 235678999999999999999999999999
Q ss_pred EEEEEEECCCH-hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC---HHHHHHHHHHcCCc----EEEEecCC
Q 028237 81 GALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS---TEEGEQFAKEHGLI----FMEASAKT 152 (211)
Q Consensus 81 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~ 152 (211)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+..... .+..+.+++..+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57888889998876654 478999999999986533221 22344556566776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHH
Q 028237 153 AQ-NVEEAFIKTAATIYKK 170 (211)
Q Consensus 153 g~-~v~~~~~~l~~~~~~~ 170 (211)
+. ++.++++.|.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 8999998888776543
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=7.2e-30 Score=186.71 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=127.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|....+.. +.++.+.. ...+.++ .+.+.+||+||++.+..++..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 44554533 3345555 478999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.. ...++.... ...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999999988888877755432 589999999999996532 233333222 2234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9.2e-29 Score=179.70 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=125.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|.+..+ ..+.++.+.. ...+.+++ ..+.+||+||++.+..++..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 4445555533 34455554 88999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++...... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888776543 358999999999999653 344554444322 23579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.4e-31 Score=196.96 Aligned_cols=162 Identities=28% Similarity=0.564 Sum_probs=136.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4578999999999999999999998888777777654444 445566777888999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028237 84 LVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGL-IFMEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. .+..+++..+++..++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999998887 67777665443 78999999999996532 3455667788888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028237 150 AKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 150 a~~g~~v~~~~~~l~~~~ 167 (211)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=9.5e-29 Score=181.98 Aligned_cols=159 Identities=23% Similarity=0.291 Sum_probs=120.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE--EEEEEEC-CEEEEEEEEeCCCcchhhhhh---HHhhc
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITID-NKPIKLQIWDTAGQESFRSIT---RSYYR 77 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~ 77 (211)
+..+||+|+|.+|||||||++++.+. +... ++.+.++. .....+. +..+.+.+||++|++.|..+. ..+++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 45789999999999999999988764 3222 23233332 2223333 566899999999999987776 89999
Q ss_pred CCcEEEEEEECCCH--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-------CCCCHHHHHHHHH----HcCCc
Q 028237 78 GAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-------RAVSTEEGEQFAK----EHGLI 144 (211)
Q Consensus 78 ~~d~~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~~ 144 (211)
.+|++|+|||+++. ++++.+..|+..+... ..+.|+++|+||+|+.+. +.+...+...+++ ..+++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 99999999999997 6667777777666433 348999999999998542 2333445667777 66789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 028237 145 FMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
++++||++ .|++++|..|++.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999999865
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=5.7e-28 Score=173.09 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=116.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------hhhHHhhc--
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------SITRSYYR-- 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 77 (211)
.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998876655555555555555566665 689999999988764 44566665
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.+...+.. +.+.+++..+++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998654 3346655544 3789999999999865433332 3677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 028237 158 EAFIKTAATI 167 (211)
Q Consensus 158 ~~~~~l~~~~ 167 (211)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=4.7e-28 Score=180.44 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=114.6
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE-EEEEEEEeCCCcchhhh-hhHHhhcCCc
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRS-ITRSYYRGAA 80 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d 80 (211)
....++|+|+|.+|+|||||+++|++..+...+.++ +..+.. +.+++. .+.+.+|||||++.+.. ++..|++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 345789999999999999999999998877666543 444433 555543 58899999999999988 8899999999
Q ss_pred EEEEEEECCCHh-hHHHHHHHHH-HHHHh--cCCCCcEEEEEecCCCCCCCCCCHHHHHH----HHH-------------
Q 028237 81 GALLVYDITRRE-TFNHLASWLE-DARQH--ANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAK------------- 139 (211)
Q Consensus 81 ~~i~v~d~~~~~-~~~~~~~~~~-~l~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~------------- 139 (211)
++|+|||+++.. ++..+..++. .+... ...+.|+++|+||+|+.+... .+.... ...
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccc
Confidence 999999999854 4555555444 33331 235799999999999965432 221111 111
Q ss_pred --------------------Hc--CCcEEEEecCCC------CCHHHHHHHHHHH
Q 028237 140 --------------------EH--GLIFMEASAKTA------QNVEEAFIKTAAT 166 (211)
Q Consensus 140 --------------------~~--~~~~~~~sa~~g------~~v~~~~~~l~~~ 166 (211)
.. +++++++||++| .|++++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=5.2e-27 Score=176.63 Aligned_cols=167 Identities=17% Similarity=0.105 Sum_probs=118.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc------chh---hhhhHH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ------ESF---RSITRS 74 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~ 74 (211)
+..++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||+ +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 3468999999999999999999998876533333333344333444444 78999999998 331 122345
Q ss_pred hhcCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHcC--CcEEE
Q 028237 75 YYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE---EGEQFAKEHG--LIFME 147 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 147 (211)
++..+|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+.+.+.+... ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5788999999999999876542 23344444332 137999999999999776555544 4566777777 88999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237 148 ASAKTAQNVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~~~~~~ 173 (211)
+||++|.|++++|++|.+.+.+....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877543
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.1e-27 Score=173.14 Aligned_cols=160 Identities=21% Similarity=0.197 Sum_probs=122.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+||+||++.+..++..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999988877777666666666677776 46789999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-------C--CcEEEEecCCCC
Q 028237 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-------G--LIFMEASAKTAQ 154 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~sa~~g~ 154 (211)
+|||++++..... +..+......+.|+++|+||+|+.+. ..++........ + ++++++||++|.
T Consensus 84 ~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 9999988432211 11222222347899999999999652 233333333322 2 479999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 028237 155 NVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 155 ~v~~~~~~l~~~~~~~~~ 172 (211)
|++++|++|.+.+.....
T Consensus 157 gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhhhhhcc
Confidence 999999999988776543
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=188.81 Aligned_cols=164 Identities=26% Similarity=0.408 Sum_probs=121.9
Q ss_pred cceeeeEEEEcCC---------CCCHHHHHHHHhh---CCCCCCCCCCc-eeEEEEEE--------------EEECCEEE
Q 028237 3 YAYLFKYIIIGDT---------GVGKSCLLLQFTD---KRFQPVHDLTI-GVEFGARM--------------ITIDNKPI 55 (211)
Q Consensus 3 ~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~ 55 (211)
.+..+||+|+|.+ |+|||||+++|.+ ..+...+.+++ +.++.... ..+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4557999999999 9999999999998 45555555543 23322111 12456678
Q ss_pred EEEEEe-----------------------CCCcchhhhhhHHhhc---------------------CCcEEEEEEECCCH
Q 028237 56 KLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLVYDITRR 91 (211)
Q Consensus 56 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~ 91 (211)
.+.||| ++|++.+..++..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 5566666667777777 79999999999998
Q ss_pred --hhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 92 --ETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 92 --~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.+++.+..|+..+... ...+.|+++|+||+|+.+.+. .++++.+++. .+++++++||++|.|++++|.+|.+.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999888665 335899999999999865433 2567777776 488999999999999999999998876
Q ss_pred H
Q 028237 168 Y 168 (211)
Q Consensus 168 ~ 168 (211)
.
T Consensus 254 ~ 254 (255)
T 3c5h_A 254 D 254 (255)
T ss_dssp H
T ss_pred c
Confidence 3
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=8e-27 Score=182.95 Aligned_cols=160 Identities=19% Similarity=0.314 Sum_probs=126.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-----hhhhHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-----RSITRSYY 76 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 76 (211)
..+||+|+|.+|+|||||+++|+++.... .+.+|.+..+. .+.+.+ .+.+.+||+||++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 35899999999999999999998874332 34444444443 344444 689999999999988 67889999
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCC--CCC----CCHHHHHHHHHHcC---CcE
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH--RRA----VSTEEGEQFAKEHG---LIF 145 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 145 (211)
+++|++|+|||++++.+++.+..|...+.... ..+.|+++++||+|+.+ .+. ...++++++++.++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765554322 35899999999999965 332 44567788888887 689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 028237 146 MEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 146 ~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
+++||++ .++.++|..+++.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999998887543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.8e-28 Score=192.09 Aligned_cols=158 Identities=18% Similarity=0.306 Sum_probs=119.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|.+|+|||||+++|.+..+... .+|.+..+ ..+... .+.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 357999999999999999999998876433 23434333 233333 4789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~ 158 (211)
|||++++.+++.+..++..+..... .+.|++||+||+|+.+.. ..+++...... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999999999998888776654433 589999999999996532 33333332221 245699999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 159 AFIKTAATIYK 169 (211)
Q Consensus 159 ~~~~l~~~~~~ 169 (211)
+|++|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=8.1e-27 Score=171.11 Aligned_cols=158 Identities=15% Similarity=0.208 Sum_probs=109.9
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (211)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++ ++.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34578999999999999999999999876665566656665555555544 689999999 67778888
Q ss_pred HHhhcCC---cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--HHHHH-HHHHcCCcEE
Q 028237 73 RSYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--EEGEQ-FAKEHGLIFM 146 (211)
Q Consensus 73 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 146 (211)
..+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+...... +++.+ +....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 8888777 9999999999876655432 2222222 4789999999999976443221 22222 2223457899
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028237 147 EASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~~ 167 (211)
++||++|.|++++|++|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999998865
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=2.3e-27 Score=197.48 Aligned_cols=162 Identities=20% Similarity=0.356 Sum_probs=127.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|++..+. .+.+|.+.++. .+.+ ..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999998854 34455555543 2333 4578999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237 84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~ 157 (211)
+|||++++.+++.+..|+..+..... .++|++||+||+|+.+. ....++..... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999988888765443 58999999999999653 23333333221 123469999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 028237 158 EAFIKTAATIYKKIQ 172 (211)
Q Consensus 158 ~~~~~l~~~~~~~~~ 172 (211)
++|++|.+.+.+..+
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999987765544
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=7.2e-27 Score=170.56 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=118.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC-----------cchhhhhhHHh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-----------QESFRSITRSY 75 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 75 (211)
++|+|+|.+|+|||||+++|.+..+...+.++.+.. ...+.+. .+.+||+|| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 699999999999999999999988876666654333 3333333 688999999 66777888888
Q ss_pred hcC-CcEEEEEEECCCHhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237 76 YRG-AAGALLVYDITRRETFNHL-ASWLED--------A-RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 144 (211)
Q Consensus 76 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
++. ++++++||++.+..+++.+ ..|... + ......+.|+++|+||+|+.+.. .+..+.+++..+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 887 7777777777777777665 445432 1 22223589999999999986543 56677888888764
Q ss_pred -------EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237 145 -------FMEASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 145 -------~~~~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
++++||++|.|++++|++|.+.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999886643
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.3e-26 Score=169.04 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=123.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------hhhHHhhc-
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------SITRSYYR- 77 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 77 (211)
..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+|||||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 358999999999999999999998766555556656666666676665 789999999988764 45666664
Q ss_pred -CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 78 -GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 78 -~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
.+|++++|+|.++. +....|+..+.. .+.|+++++||+|+.+..... ...+.+++..+++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchhH---HHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 58999999999863 444556655544 478999999999986544333 3567788888999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIYKKI 171 (211)
Q Consensus 157 ~~~~~~l~~~~~~~~ 171 (211)
+++|++|.+.+.+..
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998876543
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=5.8e-26 Score=161.42 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-------hhhhhHHhhcC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYYRG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 78 (211)
.||+|+|.+|+|||||+++|.+..+. ....++.+.+.....+..++ ..+.+||+||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 23333334455555566666 4789999999876 45567778999
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~ 157 (211)
+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.. ++.++++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998543322 112222222 378999999999996542 2334445 5677 79999999999999
Q ss_pred HHHHHHHHHH
Q 028237 158 EAFIKTAATI 167 (211)
Q Consensus 158 ~~~~~l~~~~ 167 (211)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.8e-27 Score=185.70 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=118.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh---hhHHhhcCCcE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS---ITRSYYRGAAG 81 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 81 (211)
||+++|..|+|||||++++.+..++. ...+|.+.++.. ++ ..++++||||+|+++|.. ++..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654432 245666666642 33 358999999999999964 46899999999
Q ss_pred EEEEEECCCH--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-------CCCCHHHHHHHHHH----cCCcEEEE
Q 028237 82 ALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-------RAVSTEEGEQFAKE----HGLIFMEA 148 (211)
Q Consensus 82 ~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 148 (211)
+|+|||++++ +.......|+..+... .++.|+++++||+|+.+. +++..++.+++++. .++++++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333333444444333 358999999999999653 23445556667765 57889999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
||++ .+|.++|..+++.+....
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhH
Confidence 9998 589999999998766543
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.4e-26 Score=167.05 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=113.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------h--hHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------I--TRSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~--~~~~ 75 (211)
..++|+|+|.+|+|||||+++|.+.... ....++.+.++....+.+++ ..+.+|||||++.+.. + ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3579999999999999999999987643 23334445556666677776 4588999999864321 1 1245
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
++.+|++++|||++++.+++ ...|+..+......+.|+++|+||+|+.+... .++...+++++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 88999999999999877765 34676666665555799999999999854211 11222467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIY 168 (211)
Q Consensus 156 v~~~~~~l~~~~~ 168 (211)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=9.1e-26 Score=172.72 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=119.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------hhHHhh--
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------ITRSYY-- 76 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 76 (211)
..++|+|+|.+|||||||+|+|++..+.....+.++.......+...+ ..+.+||+||+..+.. +...|+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999877655555555555554555444 7899999999887654 335565
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
..+|++|+|+|+++.++.. .|...+.. .+.|+++++||+|+.+...... +...+++..+++++++||++|.|+
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence 5899999999999866432 34444433 3799999999999865444432 367788889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIY 168 (211)
Q Consensus 157 ~~~~~~l~~~~~ 168 (211)
+++|++|.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=3.3e-26 Score=176.18 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=117.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------hhhHHhhc-
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------SITRSYYR- 77 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 77 (211)
..++|+++|.+|||||||+|+|++........+ |.+.......+.. ...+.+|||||+..+. .+...|+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999998775555554 3444444455555 6789999999988775 45666765
Q ss_pred -CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 78 -GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 78 -~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
.+|++|+|+|+++.++. ..|...+.. .+.|+++++||+|+.+..... .+...+++..+++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986543 334444443 389999999999986543333 3457788888999999999999999
Q ss_pred HHHHHHHHHHH
Q 028237 157 EEAFIKTAATI 167 (211)
Q Consensus 157 ~~~~~~l~~~~ 167 (211)
+++|.+|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=3.7e-26 Score=174.67 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=119.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh----------hhHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS----------ITRSYY 76 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 76 (211)
.+|+|+|.+|||||||+|+|++..+.....++++.+.....+.+.+ ..+.+|||||...+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999999877666677767777777777776 4899999999876653 566777
Q ss_pred --cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237 77 --RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (211)
Q Consensus 77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~ 154 (211)
+.+|++|+|+|+++.++...+..++. ..+.|+++++||+|+.+..... .....+.+..+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998665444333322 2389999999999985543222 22456777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAAT 166 (211)
Q Consensus 155 ~v~~~~~~l~~~ 166 (211)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.7e-26 Score=193.73 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=125.2
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEE------EEE--CCEEEEEEEEeCCCcchhhhhhH
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM------ITI--DNKPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
.....+||+|+|.+|||||||+++|++..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456799999999999999999999999888888888777775442 112 33468999999999999999999
Q ss_pred HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
.+++.+|++|+|||+++.+ .+..|+..+..+.. +.|+++|+||+|+.+...+..++++.++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 9999999999999998654 45677777776653 7999999999999877777888888898889999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATIYKK 170 (211)
Q Consensus 154 ~~v~~~~~~l~~~~~~~ 170 (211)
.|++++|..|.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999877553
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=2e-25 Score=163.43 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=113.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (211)
....++|+|+|.+|+|||||+++|++.... ...++.+.+........+. ++.+||+|| .+.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 345689999999999999999999988743 3334445555444444443 577999999 66677788
Q ss_pred HHhhcCC---cEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHc-CCc
Q 028237 73 RSYYRGA---AGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEH-GLI 144 (211)
Q Consensus 73 ~~~~~~~---d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~-~~~ 144 (211)
..+++.+ |++++|+|..+..+.. .+..|+.. .+.|+++|+||+|+.+... ...+++..++... +++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 8887766 8999999998754332 22333322 2789999999999864322 2234455666653 478
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 145 FMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
++++||++|.|++++|++|.+.+.+
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999987753
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=4.5e-25 Score=173.03 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=123.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh----------hhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR----------SIT 72 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~ 72 (211)
...-.|+|+|.+|||||||+|+|++..+..... +..+........... ...++.+|||||+..+. ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 445689999999999999999999988764333 222333322333333 14789999999985433 566
Q ss_pred HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEec
Q 028237 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASA 150 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa 150 (211)
..+++.+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+........+....+.+..+ .+++++||
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA 163 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 7788999999999999998777776666666654 378999999999997434455666777877775 77999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028237 151 KTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 151 ~~g~~v~~~~~~l~~~~~ 168 (211)
++|.|++++|++|.+.+.
T Consensus 164 ~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 164 LKGANLDELVKTILKYLP 181 (308)
T ss_dssp TTTBSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCc
Confidence 999999999999988763
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=4.9e-25 Score=170.02 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=121.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------hhHHhh--c
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------ITRSYY--R 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~ 77 (211)
.++|+|+|++|||||||+|+|++..+.....++.+.+.....+.+.+ ..+.+||+||+..+.. +...|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 48999999999999999999999887666777777777777777766 4699999999887665 566666 6
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
.+|++|+|+|+++.+. ...++..+.... ..|+++++||+|+.+....... ...+.+..+++++++||++|.|+.
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 8999999999998642 223333333331 3899999999997543322222 677788889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYK 169 (211)
Q Consensus 158 ~~~~~l~~~~~~ 169 (211)
++|..+.+.+.+
T Consensus 155 ~l~~~i~~~~~~ 166 (271)
T 3k53_A 155 ELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=2.8e-25 Score=166.37 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=111.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCc----------chhhhhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQ----------ESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~ 72 (211)
...++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.+|||||. +.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999999986322222233334444444444 44578999999994 4456666
Q ss_pred HHhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH-------
Q 028237 73 RSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKE------- 140 (211)
Q Consensus 73 ~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~------- 140 (211)
..|++. +|++|+|+|+.+..+.. ...++..+.. .+.|+++|+||+|+.+.... ..+...+....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 677666 77899999998754322 2233344333 37899999999998653221 11222222222
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237 141 HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 141 ~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
.+++++++||++|.|+.++|++|.+.+....
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999998876543
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.7e-25 Score=172.75 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=116.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh----------hhhHHh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR----------SITRSY 75 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 75 (211)
.++|+|+|.+|||||||+|+|++..+.....++++.+.....+...+ ..+.+|||||+..+. .+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999877666666666666666666554 578899999987665 234444
Q ss_pred h--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 76 Y--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 76 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
+ +.+|++|+|+|+++.+....+..+ +... +.|+++++||+|+.+..... .....+.+..+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 799999999999986654443333 3332 79999999999985433221 2246677888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATI 167 (211)
Q Consensus 154 ~~v~~~~~~l~~~~ 167 (211)
.|++++|++|.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987654
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.6e-25 Score=164.66 Aligned_cols=144 Identities=20% Similarity=0.296 Sum_probs=106.5
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcC-
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG- 78 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 78 (211)
....++|+|+|++|+|||||+++|.+..+... +.++.+..+ ....+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 34678999999999999999999999876542 333322221 45678999999999999888888877
Q ss_pred ---CcEEEEEEECC-CHhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHHcCCc
Q 028237 79 ---AAGALLVYDIT-RRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVS------TEEGEQFAKEHGLI 144 (211)
Q Consensus 79 ---~d~~i~v~d~~-~~~~~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 144 (211)
+|++|+|||++ ++.++..+..|+..+... ...+.|+++|+||+|+.+..... .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887776554 23589999999999997654433 34566777777788
Q ss_pred EEEEecCCCCC
Q 028237 145 FMEASAKTAQN 155 (211)
Q Consensus 145 ~~~~sa~~g~~ 155 (211)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998864
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=5.4e-24 Score=174.33 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=116.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhhhH
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSITR 73 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~ 73 (211)
..++|+|+|.+|+|||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+ +.|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 5689999999999999999999987654 33344445555555566666 46899999997 44554443
Q ss_pred -HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHHH----cCCcEEE
Q 028237 74 -SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-FAKE----HGLIFME 147 (211)
Q Consensus 74 -~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~ 147 (211)
.+++.+|++++|+|++++.+.+.. .|...+.. .+.|+++++||+|+.+.+....++..+ +.+. .++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 478899999999999998776664 45554443 479999999999997655444444332 2222 3678999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 028237 148 ASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 148 ~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
+||++|.|++++|..+.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EecccCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998887653
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=2.2e-23 Score=171.56 Aligned_cols=156 Identities=18% Similarity=0.131 Sum_probs=99.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhh--------HHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--------RSYY 76 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 76 (211)
.++|+|+|.+|+|||||+|+|++... .....++++.+.....+.+++ +.+.+|||||+..+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 57899999999999999999998753 344444445666666677776 679999999987765443 3468
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
+.+|++|+|+|++++.+++.+..+...+.... +.|+++|+||+|+.+.... ..+.+.+....+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999999877654333333333322 7899999999999654322 223444443478999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIY 168 (211)
Q Consensus 157 ~~~~~~l~~~~~ 168 (211)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=5.9e-23 Score=164.15 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=120.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh---------hhhHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---------SITRSY 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~ 75 (211)
..++|+++|.+|+|||||+++|.+........+..+.......+... ...+.+|||||..... .....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 46799999999999999999999876533322332333333333334 3679999999975421 122244
Q ss_pred hcCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237 76 YRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g 153 (211)
...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+... .++...++...+++++++||++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence 56799999999998876 66777778877766543 799999999999865322 34566677778899999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 154 ~~v~~~~~~l~~~~~~~~ 171 (211)
.|++++|++|.+.+....
T Consensus 321 ~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp BTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999886653
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.6e-23 Score=172.53 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=120.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (211)
+..++|+++|.+|+|||||+++|++... .....++++.+.....+.+++ ..+.+||||| ++.|..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3468999999999999999999997642 333444444554445566666 4889999999 56676665
Q ss_pred H-HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEE
Q 028237 73 R-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-----GLIFM 146 (211)
Q Consensus 73 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 146 (211)
. .+++.+|++|+|+|+++..+.. ...|...+.. .++|+++|+||+|+.+.+....+++.+.++.. +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 5 4789999999999998754322 2334444433 37999999999999876666667777666654 57899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237 147 EASAKTAQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~~~~~~~ 172 (211)
++||++|.|++++|..+.+.+.+...
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998876644
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=5.9e-23 Score=168.33 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhhhHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES---------FRSITRSYY 76 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 76 (211)
.+|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+.+ ..+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999988754 34444555556666677776 4688999999664 344567789
Q ss_pred cCCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH-HHHHHHcCC-cEEEEecCC
Q 028237 77 RGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG-EQFAKEHGL-IFMEASAKT 152 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~ 152 (211)
+.+|++|+|+|+.+..+.. .+..|+. . .++|+++++||+|+.+. . ..+. ..+. ..++ +++++||.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754432 2333322 2 27899999999997432 0 1222 3343 4566 689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCC
Q 028237 153 AQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPS 196 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (211)
|.|+.++|+++.+.+.+..... .....+...++++-.|.|+..
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~-~~~~~~~~~~kvaivG~~gvG 192 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDL-ESKPEITDAIKVAIVGRPNVG 192 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCS-SSCCCCCSCEEEEEECSTTSS
T ss_pred CCCHHHHHHHHHHhcccccccc-hhccccccCceEEEECCCCCC
Confidence 9999999999998876432110 011112345677766666543
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=1.9e-23 Score=163.07 Aligned_cols=153 Identities=20% Similarity=0.154 Sum_probs=107.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYY 76 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
..+|+|+|.+|+|||||+|+|++..+... ..+.++.......+... ..++.+|||||... +......++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 45799999999999999999999887643 23322222222222323 47899999999765 455667789
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHH-HHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCC
Q 028237 77 RGAAGALLVYDITRRETFNHLASWL-EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTA 153 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g 153 (211)
+.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+.+... .+...++.+ ..+++++||++|
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDE 157 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCH
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCC
Confidence 9999999999998764433 2333 3343322 4789999999999864321 023333332 246999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028237 154 QNVEEAFIKTAATI 167 (211)
Q Consensus 154 ~~v~~~~~~l~~~~ 167 (211)
.|++++|+.|.+.+
T Consensus 158 ~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 158 RQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999988754
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=1e-23 Score=167.43 Aligned_cols=125 Identities=17% Similarity=0.245 Sum_probs=103.4
Q ss_pred EEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcE
Q 028237 46 RMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTI 114 (211)
Q Consensus 46 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~ 114 (211)
..+.++ .+.+.+||++|++.+..+|.+|+++++++|||||+++ ..++++...|+..+..+.. .+.|+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 334444 4889999999999999999999999999999999998 4578888888888866543 58999
Q ss_pred EEEEecCCCCCCC---------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 115 MLIGNKCDLAHRR---------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 115 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
+|++||+|+.+.. .+..+++..++. ..++.+++|||+++.||.++|.++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999984321 356788888876 35677999999999999999999999988
Q ss_pred HHHh
Q 028237 169 KKIQ 172 (211)
Q Consensus 169 ~~~~ 172 (211)
+...
T Consensus 344 ~~~l 347 (353)
T 1cip_A 344 KNNL 347 (353)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7643
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=8.8e-24 Score=167.28 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=120.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhhHHhhc---CC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSITRSYYR---GA 79 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 79 (211)
.+|+|+|.+|||||||+++|+.........+..+.......+.+++ ...+.+||+||+.+ +..+...|++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4799999999999999999998765433333334444444455553 25789999999643 3345555554 49
Q ss_pred cEEEEEEECCC---HhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecCC
Q 028237 80 AGALLVYDITR---RETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAKT 152 (211)
Q Consensus 80 d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 152 (211)
|++|+|+|+++ +.+++.+..|+.++..+.. .++|+++|+||+|+.+. .+..+.+.+... ++++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7788888889888887653 48999999999998642 244566777766 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAATIYK 169 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~ 169 (211)
+.|++++|.+|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999987754
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=7.4e-23 Score=168.60 Aligned_cols=154 Identities=21% Similarity=0.163 Sum_probs=117.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-hhh--------hhhHHh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-SFR--------SITRSY 75 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~ 75 (211)
.++|+|+|.+|+|||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||.. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998754 344455556666667777776 578999999987 543 234567
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
++.+|++|+|+|++++.+.+... ++..+ .+.|+++|+||+|+.+. ...+++..+.. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 89999999999999877665432 22222 37899999999999653 34555555432 447899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKK 170 (211)
Q Consensus 156 v~~~~~~l~~~~~~~ 170 (211)
++++|++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987654
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=5e-24 Score=172.82 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=115.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-------hHHh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-------TRSY 75 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~ 75 (211)
...++|+|+|..|+|||||+++|++..+. ....+..+.+.....+.+.+. ..+.+|||||+..+..+ ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 45789999999999999999999988763 333444455555566666553 38999999999877554 4568
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~ 155 (211)
+..+|++|+|+|+..... ...|+..+... +.|+++|+||+|+.+.... +..+.+.+.++++++++||++|.|
T Consensus 111 l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence 899999999999943332 34555555554 7999999999999765443 556677777789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYK 169 (211)
Q Consensus 156 v~~~~~~l~~~~~~ 169 (211)
++++|++|.+.+.+
T Consensus 183 I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 183 FDDIGKTISEILPG 196 (423)
T ss_dssp TTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987743
No 135
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=6.1e-22 Score=160.91 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=106.0
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEE
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMITI-------------D--N----KPIK 56 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 56 (211)
|.....++|+++|+.++|||||+++|++.. +..+..+ |+...+....+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 455678999999999999999999998543 3333333 3333333333221 1 1 1378
Q ss_pred EEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CC
Q 028237 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VS 130 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~ 130 (211)
+.+||+||++.|.......+..+|++|+|+|+++ +++.+.+.. +... ...|+++++||+|+.+... ..
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHH
Confidence 9999999999998888888889999999999985 444444332 2222 1358999999999976433 23
Q ss_pred HHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 131 TEEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
.++++.++.. .+++++++||++|.|+++++++|.+.+
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 4566666665 357899999999999999999987654
No 136
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=2.8e-22 Score=157.18 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=101.7
Q ss_pred EEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC----------CHhhHHHHHHHHHHHHHhcC-CCCcE
Q 028237 46 RMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTI 114 (211)
Q Consensus 46 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~~-~~~p~ 114 (211)
..+.++ .+++.+||++|++.++.+|.+|+++++++|||||++ +..++.+...|+..+..... .+.|+
T Consensus 160 ~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i 237 (327)
T 3ohm_A 160 YPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 237 (327)
T ss_dssp EEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred EEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence 334444 489999999999999999999999999999999665 56678888888877765544 68999
Q ss_pred EEEEecCCCCCCC----------------CCCHHHHHHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 115 MLIGNKCDLAHRR----------------AVSTEEGEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 115 ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
++++||+|+.+++ ..+.+++..++. ..++.+++|||+++.||.++|..+.+.+.
T Consensus 238 iL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 238 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp EEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 9999999985432 457778877743 34567889999999999999999999998
Q ss_pred HHHh
Q 028237 169 KKIQ 172 (211)
Q Consensus 169 ~~~~ 172 (211)
+...
T Consensus 318 ~~~l 321 (327)
T 3ohm_A 318 QLNL 321 (327)
T ss_dssp HTTC
T ss_pred HHhH
Confidence 7643
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=2.5e-21 Score=157.04 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=113.7
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEE-------EE---------EE---CCEEEEEEEEeC
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------MI---------TI---DNKPIKLQIWDT 62 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~ 62 (211)
.....++|+++|++++|||||+++|++.......... ..+.... .+ .. ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 3556799999999999999999999975433211100 0000000 00 00 112378999999
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKE 140 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~ 140 (211)
||++.|......++..+|++|+|+|+++..++.....++..+.... ..|+++++||+|+.+.... ..+++..+...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998765566666666555442 3589999999998653211 11223333322
Q ss_pred c---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 141 H---GLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 141 ~---~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
. +++++++||++|.|++++|+.|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2 56899999999999999999988754
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=8.1e-22 Score=149.24 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=107.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC--CceeEEEEEEEEECCEEEEEEEEeCCCcc-----------hhhh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQIWDTAGQE-----------SFRS 70 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~ 70 (211)
+..++|+|+|.+|+|||||+|+|++..+.....+ +++..+....+.+.+ ..+.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4578999999999999999999999888665554 344445455555555 678999999943 3444
Q ss_pred hhHHhhcCCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHHcC
Q 028237 71 ITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS------TEEGEQFAKEHG 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~ 142 (211)
....+++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.+..... .+.++.+++..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 55566778899999999875333 22222222222221 246999999999986543222 235777888888
Q ss_pred CcEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 028237 143 LIFMEASAKTA-----QNVEEAFIKTAATIYK 169 (211)
Q Consensus 143 ~~~~~~sa~~g-----~~v~~~~~~l~~~~~~ 169 (211)
..++.++...+ .++.++|..+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888877644 5788888877666644
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=5.5e-22 Score=163.96 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=111.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR 77 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 77 (211)
..++|+++|+.++|||||+++|++.. +..+..+..+.+.....+.+++ ..+.+|||||++.|......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 36899999999999999999999876 2223333333333333444454 78999999999999999999999
Q ss_pred CCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHc----CCcEEEE
Q 028237 78 GAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEH----GLIFMEA 148 (211)
Q Consensus 78 ~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 148 (211)
.+|++|+|+|+++ +++.+.+. .+.. .+.|.++++||+|+.+... ...+++..++... +++++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999987 44444332 2222 2788999999999965211 1134455566555 5789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028237 149 SAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 149 sa~~g~~v~~~~~~l~~~~~ 168 (211)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999988775
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=9.9e-22 Score=165.20 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=114.1
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCC--CCCC-----C------CCCceeEEEE--EEEEE---CCEEEEEEEEeC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----H------DLTIGVEFGA--RMITI---DNKPIKLQIWDT 62 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~ 62 (211)
|..+...+|+|+|+.++|||||+++|+... .... . ....+++... ..+.+ ++..+.++||||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 445678899999999999999999997631 1110 0 0011222221 11222 455689999999
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG 142 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (211)
||+..|...+..+++.+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.+.+ ......++.+..+
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg 154 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG 154 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence 9999999999999999999999999998776666666654432 378999999999996532 2233455666666
Q ss_pred C---cEEEEecCCCCCHHHHHHHHHHHH
Q 028237 143 L---IFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 143 ~---~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
+ +++++||++|.|+.++|++|.+.+
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 6 499999999999999999987755
No 141
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=2.2e-22 Score=159.76 Aligned_cols=120 Identities=16% Similarity=0.246 Sum_probs=95.8
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC----------CHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIGNKC 121 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~ 121 (211)
..+.+.+||++|++.+..+|..|+++++++|+|||++ +..+++....|+..+..... .+.|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 77889999999888876543 689999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHH
Q 028237 122 DLAHRRA--V-------------------STEEGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 122 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
|+.++.. + ..+++..++.. ..+.+++|||+++.||.++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 14556666433 123468999999999999999999
Q ss_pred HHHHHHHh
Q 028237 165 ATIYKKIQ 172 (211)
Q Consensus 165 ~~~~~~~~ 172 (211)
+.+.+...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=9.5e-22 Score=165.53 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=109.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC--CC-----C------CCCCceeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP-----V------HDLTIGVEFGARMITI-----DNKPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 65 (211)
+...+|+|+|+.++|||||+++|+.... .. . .....+.+.....+.+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 3567999999999999999999986321 10 0 0112233443333322 455789999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-- 143 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 143 (211)
..|...+..+++.+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.+.+ ......++.+..++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999998666666666654432 378999999999996532 23334566666666
Q ss_pred -cEEEEecCCCCCHHHHHHHHHHHH
Q 028237 144 -IFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 144 -~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
+++++||++|.|+.++|++|.+.+
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ceEEEeecccCCCchhHHHHHhhcC
Confidence 499999999999999999888754
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=4.9e-23 Score=168.66 Aligned_cols=173 Identities=17% Similarity=0.131 Sum_probs=108.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc--------hhhhhhHHhhcC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE--------SFRSITRSYYRG 78 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 78 (211)
++|+|+|.+|+|||||+|+|.+..+... ..+.+.+.......+...+..+.+|||||++ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998776432 2333555444444555555789999999985 566777888999
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237 79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~ 157 (211)
+|++|+|+|+.+..+... .++..+.. ..++|+++++||+|+.+... +..++. ..++ +++++||.+|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999988655433 22222222 24789999999999864321 111222 3455 68999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCC
Q 028237 158 EAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPG 194 (211)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (211)
++++++.+.+.+. . ....+...++++-.|.|+
T Consensus 154 ~L~~~i~~~l~~~----~-~~~~~~~~~ki~lvG~~n 185 (436)
T 2hjg_A 154 DLLDAVAEHFKNI----P-ETKYNEEVIQFCLIGRPN 185 (436)
T ss_dssp HHHHHHHHTGGGC----C-SSCCCTTCEEEEEECSTT
T ss_pred HHHHHHHHhcCcc----c-cccccccCcEEEEEcCCC
Confidence 9999998876421 1 111223445666556553
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=3.1e-21 Score=154.03 Aligned_cols=160 Identities=24% Similarity=0.140 Sum_probs=110.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHHhhcC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSYYRG 78 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~ 78 (211)
.|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+++ ..+.+|||+|.. .+...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 399999999999999999998876544444445556667777877 568999999962 233332 35788
Q ss_pred CcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHc---CCcEEEEecCC
Q 028237 79 AAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEH---GLIFMEASAKT 152 (211)
Q Consensus 79 ~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~sa~~ 152 (211)
+|++++|+|++++. ..+.+..+...+......+.|+++|+||+|+.+.... ....+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5555656666665554457899999999998653210 011233334444 34689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028237 153 AQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~~ 170 (211)
+.|+++++++|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999998877654
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=9e-22 Score=160.03 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=110.9
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEEEE
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMITI-------------D--N----KPIKLQ 58 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 58 (211)
....++|+++|+.++|||||+++|++.. +..+..+ |+...+....+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 2333333 3333333322211 1 1 137899
Q ss_pred EEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHH
Q 028237 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTE 132 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 132 (211)
+||+||++.|.......+..+|++|+|+|+++ +++.+.+.. +.... ..|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 99999999998888888889999999999985 444444332 22221 358999999999865321 1233
Q ss_pred HHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237 133 EGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 133 ~~~~~~~~---~~~~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
++..+... .+++++++||++|.|+++++++|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 44555543 357899999999999999999887644
No 146
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=8.4e-22 Score=156.99 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=95.3
Q ss_pred EEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEE
Q 028237 47 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIM 115 (211)
Q Consensus 47 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~i 115 (211)
.+.++ .+.+.+||++|++.+..+|.+++++++++|||||+++ ..++.+...|+..+..... .+.|+|
T Consensus 195 ~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 195 DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 34444 4889999999999999999999999999999999999 6789998888888866543 689999
Q ss_pred EEEecCCCCCCC----------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 116 LIGNKCDLAHRR----------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 116 vv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
+++||+|+.++. .+..+++..++. ..++.+++|||+++.||.++|.++.+.+.
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999999985321 256777777662 34577899999999999999999999998
Q ss_pred HHHh
Q 028237 169 KKIQ 172 (211)
Q Consensus 169 ~~~~ 172 (211)
+...
T Consensus 353 ~~~l 356 (362)
T 1zcb_A 353 HDNL 356 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=3.4e-22 Score=165.57 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=100.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----------------------------CCCCCceeEEEEEEEEECCEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDNKPI 55 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..+||+++|++++|||||+++|++..... ......+++.......+....+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 46899999999999999999997651110 0011113333333344444567
Q ss_pred EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHH------HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.+.||||||++.|......++..+|++|+|+|+++...... ....+..+... ...|++|++||+|+.+.++.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence 89999999999999999999999999999999998643221 11222222221 13569999999999753322
Q ss_pred CHHH----HHHHHHHc-----CCcEEEEecCCCCCHHHH
Q 028237 130 STEE----GEQFAKEH-----GLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 130 ~~~~----~~~~~~~~-----~~~~~~~sa~~g~~v~~~ 159 (211)
..++ +..+.... +++++++||++|.|+.++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2232 33334333 357999999999999863
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.8e-22 Score=155.84 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=92.8
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-C-------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc-------
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-H-------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE------- 66 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------- 66 (211)
.....++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||..
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 345679999999999999999999887655433 2 4455555555555555666799999999973
Q ss_pred hhhhhh-------HHhhc-------------CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237 67 SFRSIT-------RSYYR-------------GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (211)
Q Consensus 67 ~~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+..+. ..|+. .+|+++++++.......+.-..++..+.. ++|+++|+||+|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 233333 33333 27789998877652211111223333322 7999999999998542
Q ss_pred CCC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 127 RAV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
.+. ....+.+.....+++++++|+.++.|+.+++.+|.+.
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 211 1133455566778999999999999999999888764
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.4e-21 Score=148.62 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=104.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCcee--EEEEEEEEECCEEEEEEEEeCCCc--------chhhhhhH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--EFGARMITIDNKPIKLQIWDTAGQ--------ESFRSITR 73 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~ 73 (211)
...++|+|+|.+|+|||||+|+|++.........+.+. ......+..++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45789999999999999999999998776544433223 33333444454 78999999996 33333233
Q ss_pred Hh----hcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC------CHHHHHHHHHHcC
Q 028237 74 SY----YRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV------STEEGEQFAKEHG 142 (211)
Q Consensus 74 ~~----~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~ 142 (211)
.+ .+.+|++|+|+|+++... ...+..++..+......+.|++|++||.|+.+.... ..+.++.+.+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 33 389999999999985321 112222332222111136899999999999653211 1134577778888
Q ss_pred CcEEEEecCC-----CCCHHHHHHHHHHHHHHH
Q 028237 143 LIFMEASAKT-----AQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 143 ~~~~~~sa~~-----g~~v~~~~~~l~~~~~~~ 170 (211)
..+..++... +.++.+++..|.+.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 8877777654 478899988887776653
No 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=1.4e-21 Score=149.67 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=107.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCC-ceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------h
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLT-IGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----------I 71 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~ 71 (211)
..++|+|+|.+|+|||||+++|++.. +.....++ ++.......+.+.+ ..+.||||||+..+.. .
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877 33333333 34444444455555 6799999999765422 2
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEe-cCCCCCCCCCCH-------HHHHHHHHHc
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGN-KCDLAHRRAVST-------EEGEQFAKEH 141 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~ 141 (211)
...+++.+|++|+|+|+++.... ...++..+..... ...|.++++| |+|+.... ... .++..+....
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHh
Confidence 23467899999999999862221 1122233333221 1457777777 99996421 111 2244466655
Q ss_pred CCc---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 142 GLI---F--MEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 142 ~~~---~--~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
+.. + +++||++|.|+.++|.+|.+.+...
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 532 2 7899999999999999999887653
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=1.8e-22 Score=165.60 Aligned_cols=152 Identities=19% Similarity=0.182 Sum_probs=103.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH--------Hhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITR--------SYY 76 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~ 76 (211)
.++|+|+|.+|+|||||+|+|++.... ....++.+.++....+.+++ ..+.+|||||+..+...+. .++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 578999999999999999999987543 34444445555555666776 5789999999876544333 357
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
+.+|++++|+|++++.+... ..++..+. ..|+++|+||+|+.+..... ..+.+. .+.+++++||++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 88999999999998765444 33444332 47999999999996644332 111111 3567999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIYK 169 (211)
Q Consensus 157 ~~~~~~l~~~~~~ 169 (211)
+++|++|.+.+..
T Consensus 372 ~eL~~~i~~~~~~ 384 (462)
T 3geh_A 372 DSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=2.5e-21 Score=158.48 Aligned_cols=156 Identities=23% Similarity=0.187 Sum_probs=104.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCC-------------------------------CCCCCCCceeEEEEEEEEECC
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMITIDN 52 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (211)
...++|+++|++++|||||+++|++... ..+..+ +++.......+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~~~~~ 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRAYFET 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEEEEec
Confidence 3468999999999999999999965421 111112 3444443444444
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---HHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCC-
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR- 127 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~- 127 (211)
....+.||||||++.|......++..+|++|+|+|+++... ++...++...+......+.| +++++||+|+.+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 45799999999999999999999999999999999987532 11001111111111123677 99999999985321
Q ss_pred -----CCCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 028237 128 -----AVSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 128 -----~~~~~~~~~~~~~~~------~~~~~~sa~~g~~v~~~~~ 161 (211)
+...+++..+++..+ ++++++||++|.|+.++++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 111233445555544 4699999999999999766
No 153
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=5.1e-22 Score=156.20 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=97.8
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC----------CHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIGNKC 121 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~ 121 (211)
..+.+.+||++|++.++.+|.+|+++++++|||||++ +..++.+...|+..+..... .+.|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 67788888888888766554 689999999999
Q ss_pred CCCCCC---------------CCCHHHHHHHHHHc---------------------------CCcEEEEecCCCCCHHHH
Q 028237 122 DLAHRR---------------AVSTEEGEQFAKEH---------------------------GLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 122 D~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~sa~~g~~v~~~ 159 (211)
|+.++. ..+.+++.+++... .+.++++||+++.||..+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 984311 12456665554332 366889999999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 160 FIKTAATIYKKI 171 (211)
Q Consensus 160 ~~~l~~~~~~~~ 171 (211)
|..+.+.+++.+
T Consensus 319 F~~v~~~Il~~l 330 (340)
T 4fid_A 319 FMLAVDVIMKNM 330 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999833
No 154
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=5.7e-22 Score=154.89 Aligned_cols=155 Identities=18% Similarity=0.110 Sum_probs=104.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-h--------hhhhhHHh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-S--------FRSITRSY 75 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~~ 75 (211)
..+|+|+|++|+|||||+|+|++..+... ..+..+.......+..+ ..++.+|||||+. . +......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 45899999999999999999998876422 22221222212223333 4689999999987 2 22334556
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~ 154 (211)
++.+|++++|+|.++ -+ ....++.... ...+.|+++++||+|+.+......+.+..+.+..++ .++++||+++.
T Consensus 86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WT--PDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCEEEEEEEEETTC-CC--HHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HhcCCEEEEEEeCCC-CC--HHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 788999999999976 22 1222322221 224789999999999864212223444555555666 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 028237 155 NVEEAFIKTAATI 167 (211)
Q Consensus 155 ~v~~~~~~l~~~~ 167 (211)
|++++++.+.+.+
T Consensus 161 ~v~~l~~~i~~~l 173 (301)
T 1ega_A 161 NVDTIAAIVRKHL 173 (301)
T ss_dssp THHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999988654
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=5.2e-21 Score=156.80 Aligned_cols=160 Identities=19% Similarity=0.110 Sum_probs=107.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI------------ 71 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------ 71 (211)
..++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||+|.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987642 233333344444555667774 6789999997543221
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHH----HcCCcEE
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-FAK----EHGLIFM 146 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~~ 146 (211)
...+++.+|++++|+|+.+..+.+.. .+...+.. .+.|+++++||+|+.+.+....++... +.+ ..+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 13467789999999999876554432 22222222 379999999999997654433443332 222 2357899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 028237 147 EASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
++||++|.|++++|+.+.+.+.+.
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877664
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-22 Score=161.87 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=94.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCC--------CCceeEEEEEEEEECCEEEEEEEEeCCCc-------ch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHD--------LTIGVEFGARMITIDNKPIKLQIWDTAGQ-------ES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 67 (211)
...++|+|+|++|+|||||+++|++.... ..+. ++.+.......+...+....+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45789999999999999999998765432 2221 33344443333444566778999999998 66
Q ss_pred hhhhhH-------HhhcCCcE-----------EEEEEECCC-HhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 68 FRSITR-------SYYRGAAG-----------ALLVYDITR-RETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 68 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
+..++. .|++.+++ .++||++++ ..++..+. .++..+ ..+.|+|+|+||+|+....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 666665 55544332 234444443 23333332 233322 3579999999999986543
Q ss_pred CCCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 028237 128 AVST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 177 (211)
Q Consensus 128 ~~~~--~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~ 177 (211)
++.. +++..++..++++++++||+++.+ ++.|.++.+.+.+..+.+...
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv~ 241 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVVG 241 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEECC
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEeC
Confidence 3322 456667777789999999999999 999999999998887765433
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.1e-23 Score=174.96 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=114.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|++++|||||+++|.+..+.....++.+.++....+...+ ...+.||||||++.|..++..+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467899999999999999999998766555555555554443343322 3478999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHH---HHHc--CCcEEEEecCCCCCHHH
Q 028237 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQF---AKEH--GLIFMEASAKTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~g~~v~~ 158 (211)
|+|+++....+.... +......+.|+++++||+|+.+..... ..+...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999998544333222 222223478999999999986532211 1111111 1122 24799999999999999
Q ss_pred HHHHHHHHHH
Q 028237 159 AFIKTAATIY 168 (211)
Q Consensus 159 ~~~~l~~~~~ 168 (211)
+|++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=1.9e-22 Score=165.05 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=106.2
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCCC---------------------------CCCceeEEEEEEEEEC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---------------------------DLTIGVEFGARMITID 51 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~ 51 (211)
|.....++|+++|+.++|||||+++|+.. .+.... ....+++.......+.
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 55567899999999999999999999864 222110 0011223322223344
Q ss_pred CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc----CCCC-cEEEEEecCCCCCC
Q 028237 52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----NANM-TIMLIGNKCDLAHR 126 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~----~~~~-p~ivv~nK~D~~~~ 126 (211)
...+++.||||||++.|...+..++..+|++|+|+|+++ .+++....|..+...+. ..+. |+++++||+|+.+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 445789999999999999999999999999999999998 56664433222221111 1244 68999999999652
Q ss_pred C------CCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 028237 127 R------AVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI 161 (211)
Q Consensus 127 ~------~~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~ 161 (211)
. +...++++.++...+ ++++++||++|.|+.+++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 111345666776665 6799999999999987654
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=2.3e-21 Score=155.26 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=107.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++++|||||+++|+ . .+++.......+......+.+|||||++.|......+++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~--~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------K--KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------E--EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------h--CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 1 1232222334444445689999999999998888888999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHcC---CcEEE--EecCC---CCC
Q 028237 88 ITRRETFNHLASWLEDARQHANANMTI-MLIGN-KCDLAHRRAVS--TEEGEQFAKEHG---LIFME--ASAKT---AQN 155 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~sa~~---g~~ 155 (211)
++ ........++..+... +.|. ++++| |+|+ +.+... .++++.+.+..+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3334444555444433 6777 88999 9998 432111 134555555443 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 028237 156 VEEAFIKTAATIYKK 170 (211)
Q Consensus 156 v~~~~~~l~~~~~~~ 170 (211)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887653
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=5.6e-21 Score=156.35 Aligned_cols=155 Identities=18% Similarity=0.141 Sum_probs=105.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC--C----------CCCC-------------------ceeEEEEEEEEECC
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--V----------HDLT-------------------IGVEFGARMITIDN 52 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--~----------~~~~-------------------~~~~~~~~~~~~~~ 52 (211)
...++|+++|+.++|||||+++|++..... . ...+ .+++.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999998654110 0 0011 01222222222333
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCCC--
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-TIMLIGNKCDLAHRRAV-- 129 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~~~~-- 129 (211)
...++.+|||||++.|...+..++..+|++|+|+|+++....+ ...++..+... +. |+++++||+|+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 4578999999999999998999999999999999998854222 23333333322 44 69999999999653211
Q ss_pred --CHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHHH
Q 028237 130 --STEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFIK 162 (211)
Q Consensus 130 --~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~~ 162 (211)
..+++..+++..+ ++++++||++|.|+.++|..
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1344566677777 67999999999999986543
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=2.8e-21 Score=156.92 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=104.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhC--------CCCCC-------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQPV-------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
...++|+++|++++|||||+++|++. .+... .....+.+.......+......+.+|||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999999873 11110 0012233333344445445578999999999999
Q ss_pred hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC--
Q 028237 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VSTEEGEQFAKEHG-- 142 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 142 (211)
......++..+|++|+|+|+++.... ....++..+... +.| +++++||+|+.+... ...++++.++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 99899999999999999999875432 234444444332 678 889999999864211 11234556666665
Q ss_pred ---CcEEEEecCCCCC
Q 028237 143 ---LIFMEASAKTAQN 155 (211)
Q Consensus 143 ---~~~~~~sa~~g~~ 155 (211)
++++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 6799999999987
No 162
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=1.4e-20 Score=151.18 Aligned_cols=124 Identities=14% Similarity=0.205 Sum_probs=99.6
Q ss_pred EEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEE
Q 028237 47 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIM 115 (211)
Q Consensus 47 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~i 115 (211)
.+.+++ +.+.+||++|++.+..+|..|+++++++|||||+++ ..+++.+..|+..+..... .+.|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 344444 889999999999999999999999999999999999 8899999999988876543 689999
Q ss_pred EEEecCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCcEEEEecCC
Q 028237 116 LIGNKCDLAHRRA---V---------------------------STEEGEQFA-----KE--------HGLIFMEASAKT 152 (211)
Q Consensus 116 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~ 152 (211)
|++||+|+.+... . ..+++..|+ +. .++.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999843211 1 134555553 22 245678999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 028237 153 AQNVEEAFIKTAATIYKKIQ 172 (211)
Q Consensus 153 g~~v~~~~~~l~~~~~~~~~ 172 (211)
+.||.++|.++.+.+.+...
T Consensus 369 ~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=3.2e-21 Score=156.13 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=107.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCC-------CCCC-------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPV-------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
.++|+++|+.++|||||+++|++.. +... .....+.+.....+.+......+.+|||||++.|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998741 1100 0012234444344445444578999999999999988
Q ss_pred hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC-----
Q 028237 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VSTEEGEQFAKEHG----- 142 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----- 142 (211)
...++..+|++|+|+|+++....+.. .++..+.. .+.| +++++||+|+.+... ...++++.+++..+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 89999999999999999984332222 22233332 2788 689999999864211 11245566777665
Q ss_pred CcEEEEecCCCCC----------HHHHHHHHHHH
Q 028237 143 LIFMEASAKTAQN----------VEEAFIKTAAT 166 (211)
Q Consensus 143 ~~~~~~sa~~g~~----------v~~~~~~l~~~ 166 (211)
++++++||++|.| +.++++.|.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 5899999999764 66666665543
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.3e-20 Score=158.67 Aligned_cols=160 Identities=21% Similarity=0.185 Sum_probs=108.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC----CCceeEEEEEEE------------EECCEEEEEEEEeCCCcchh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMI------------TIDNKPIKLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 68 (211)
..++|+|+|++++|||||+++|++..+..... .+.+..+..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765433221 122222211000 00001125899999999999
Q ss_pred hhhhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-------------H-
Q 028237 69 RSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-------------T- 131 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~- 131 (211)
..++..+++.+|++|+|+|+++ +++++.+.. +.. .+.|+++++||+|+.+..... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 666554332 222 378999999999986421110 0
Q ss_pred --H-------HHHHHHHHcC---------------CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237 132 --E-------EGEQFAKEHG---------------LIFMEASAKTAQNVEEAFIKTAATIYKKI 171 (211)
Q Consensus 132 --~-------~~~~~~~~~~---------------~~~~~~sa~~g~~v~~~~~~l~~~~~~~~ 171 (211)
+ +......+.+ ++++++||++|.|+.+++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111112222 37999999999999999999998776543
No 165
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.1e-21 Score=138.58 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=88.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcC--
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG-- 78 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 78 (211)
...++|+|+|++|||||||+++|.+..+... ..++.+. ......+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 3468999999999999999999999876441 2222111 1134678999999999988878877766
Q ss_pred --CcEEEEEEECC-CHhhHHHHHHHHHHHHHhc----CCCCcEEEEEecCCCCCCC
Q 028237 79 --AAGALLVYDIT-RRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 79 --~d~~i~v~d~~-~~~~~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~ 127 (211)
+|++|+|||++ ++.++..+..|+..+.... ..+.|+++|+||+|+.+..
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 8999988888877665442 3589999999999996543
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=3.3e-21 Score=158.66 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=102.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC--------cchhhhhhHHhhc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG--------QESFRSITRSYYR 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~ 77 (211)
..+|+|+|.+|||||||+|+|++..+... ..+.+.+.......+......+.+||||| ++.+......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 46899999999999999999998776522 23346666555666666667899999999 6677778889999
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCH
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNV 156 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v 156 (211)
.+|++|+|+|..+..+... .++..+.. ..++|+++++||+|+.+.. .....+. ..+. .++++||.+|.|+
T Consensus 102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HCSEEEEEEESSSCSCHHH--HHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTH
T ss_pred hCCEEEEEEeCCCCCChHH--HHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccch
Confidence 9999999999876433222 22222222 2489999999999985421 1111121 2233 4789999999999
Q ss_pred HHHHHHHHHHHH
Q 028237 157 EEAFIKTAATIY 168 (211)
Q Consensus 157 ~~~~~~l~~~~~ 168 (211)
.++++.+.+.+.
T Consensus 173 ~~L~~~i~~~l~ 184 (456)
T 4dcu_A 173 GDLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHHTTGG
T ss_pred HHHHHHHHhhcc
Confidence 999999987653
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=1.4e-20 Score=156.75 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=82.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC----------------------CCCCCceeEEEEEEEEECCEEEEEEEEeC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------------VHDLTIGVEFGARMITIDNKPIKLQIWDT 62 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 62 (211)
...+|+|+|++|+|||||+++|+...... +..+..+.......+.+. .+.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence 46799999999999999999996211100 000111222222333334 478999999
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
||+..|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999986655554433 33332 3789999999999854
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=1.5e-21 Score=160.99 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=90.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCC--CCC----------------------CC-----CCCceeEEEEEEEEECCEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP----------------------VH-----DLTIGVEFGARMITIDNKP 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~----------------------~~-----~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+++|+... +.. .. ....+.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 457899999999999999999997521 110 00 0011222222212222224
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh---hHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC--
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA-- 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~-- 128 (211)
.++.||||||++.|......++..+|++|+|+|+++.. +++...++...+......+.| ++|++||+|+.+...
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 78999999999999998999999999999999999852 222112222222222223777 999999999954211
Q ss_pred ----CCHHHHHHHHHHc-------CCcEEEEecCCCCCHHHHH
Q 028237 129 ----VSTEEGEQFAKEH-------GLIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 129 ----~~~~~~~~~~~~~-------~~~~~~~sa~~g~~v~~~~ 160 (211)
...+++..++... +++++++||++|.|+.++|
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1123456666655 3569999999999998876
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=2.7e-22 Score=165.41 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=107.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
...+|+++|+.++|||||+++|....+.....+..+.+.....+.++ ...+.||||||++.|..++..++..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 46799999999999999999998765544433333333322222233 3578999999999999999999999999999
Q ss_pred EEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHH--HHHHHHHHcC--CcEEEEecCCCCC
Q 028237 85 VYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTE--EGEQFAKEHG--LIFMEASAKTAQN 155 (211)
Q Consensus 85 v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~--~~~~~~~~~~--~~~~~~sa~~g~~ 155 (211)
|+|+++ +++.+.+ ..+.. .+.|+++++||+|+.+.+. +... +...++..++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999987 4443332 22222 3789999999999964211 1000 0001122233 6899999999999
Q ss_pred HHHHHHHHHH
Q 028237 156 VEEAFIKTAA 165 (211)
Q Consensus 156 v~~~~~~l~~ 165 (211)
++++|++|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999875
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-20 Score=160.07 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=102.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-----------------------------CCceeEEEEEEEEECCEEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------------------------LTIGVEFGARMITIDNKPI 55 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+|+|++++|||||+++|++........ ...|++.......+....+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46899999999999999999998763322110 0012233222233333457
Q ss_pred EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---HHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCCCC-
Q 028237 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVS- 130 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~~~- 130 (211)
.+.||||||++.|......+++.+|++|+|+|+++... +....++...+......+ .|++|++||+|+.+.....
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~ 325 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 325 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence 89999999999999999999999999999999987421 000111222222112224 4599999999996532222
Q ss_pred ---HHHHHHHHHHcC-----CcEEEEecCCCCCHHHHH
Q 028237 131 ---TEEGEQFAKEHG-----LIFMEASAKTAQNVEEAF 160 (211)
Q Consensus 131 ---~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~ 160 (211)
.+++..+....+ ++++++||++|.|+.++.
T Consensus 326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 233344444443 579999999999998773
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=5.7e-20 Score=136.12 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=99.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhhhH
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITR 73 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 73 (211)
....+|+|+|++|||||||+++|.+..+.....++.+.+.....+.+++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4467899999999999999999998764444445555555444444433 567999999742 333334
Q ss_pred Hhh---cCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--Cc
Q 028237 74 SYY---RGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHG--LI 144 (211)
Q Consensus 74 ~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 144 (211)
.++ ..++++++++|+.++.+... +..|+ .. .+.|+++++||+|+....+ .....++.++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 444 57889999999987654322 22222 11 3789999999999854211 11234455555554 46
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 145 FMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 145 ~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
++++|++++.++++++++|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999886543
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=1.7e-20 Score=146.30 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=105.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCCc-----------------e---eEEE--------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTI-----------------G---VEFG-------------- 44 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~-----------------~---~~~~-------------- 44 (211)
..++|+|+|.+|+|||||+|+|++..+.+.. .++. + .+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999998774221 1210 0 0000
Q ss_pred ---------EEEEEEC-CEEEEEEEEeCCCcc-------------hhhhhhHHhhcCCcEEE-EEEECCCHhhHHHHHHH
Q 028237 45 ---------ARMITID-NKPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLASW 100 (211)
Q Consensus 45 ---------~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~ 100 (211)
...+.+. .....+.+|||||.. .+..+...|++.++.+| +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0000000 012579999999963 45567778888888666 79999875443332233
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH--cC-CcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237 101 LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 101 ~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~ 173 (211)
+..+ ...+.|+++|+||+|+.+......+.++..... .+ .+++++||++|.|++++|+.|.+....-...
T Consensus 185 ~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~ 257 (299)
T 2aka_B 185 AKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSH 257 (299)
T ss_dssp HHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHC
T ss_pred HHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHhcC
Confidence 3333 234789999999999976443333322210001 12 3588999999999999999998854433333
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=2.3e-20 Score=153.55 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=103.1
Q ss_pred CC-cceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCC---------------C-------C-----CCceeEEEEEEEEE
Q 028237 1 MS-YAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---------------H-------D-----LTIGVEFGARMITI 50 (211)
Q Consensus 1 ~~-~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---------------~-------~-----~~~~~~~~~~~~~~ 50 (211)
|. ....++|+++|++++|||||+++|++. .+... . . ...+++.......+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 54 345789999999999999999999864 11110 0 0 00122222111233
Q ss_pred CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q 028237 51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDL 123 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~ 123 (211)
......+.||||||++.|......++..+|++|+|+|+++... ++ ....++..+.. .+.| +++++||+|+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl 157 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence 3345789999999999999999999999999999999997531 11 12222222222 2565 8999999999
Q ss_pred CCCCC----CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHH
Q 028237 124 AHRRA----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEA 159 (211)
Q Consensus 124 ~~~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~ 159 (211)
.+... ...+++..+++..+ ++++++||++|.|+.++
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 63211 11234555666655 67999999999999755
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=3.9e-20 Score=163.05 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=105.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCC-------CCC-------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQP-------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
..++|+++|++++|||||+++|++.. +.. ....+.|+++....+.++.....+.||||||++.|..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 46899999999999999999998631 100 1112334444433344555567899999999999998
Q ss_pred hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC----
Q 028237 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VSTEEGEQFAKEHG---- 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 142 (211)
....++..+|++|+|+|+++....+ ...++..+... ++| ++|++||+|+.+... ...+++..+....+
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 8899999999999999998753222 23333333332 678 789999999964211 11245566776665
Q ss_pred -CcEEEEecCCC--------CCHHHHHHHHHH
Q 028237 143 -LIFMEASAKTA--------QNVEEAFIKTAA 165 (211)
Q Consensus 143 -~~~~~~sa~~g--------~~v~~~~~~l~~ 165 (211)
++++++||++| .|+.++|+.|.+
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 57999999999 346666665554
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=5.9e-19 Score=150.98 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=82.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC----------------CceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------TIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
+...+|+|+|+.|+|||||+++|++......... ..++++......+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4567999999999999999999985432211100 012233333333333358899999999999
Q ss_pred hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
|......+++.+|++++|+|+++...... ..++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99999999999999999999876433222 234444433 378999999999986
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=4.4e-19 Score=143.48 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=111.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhhHHh---hcCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSITRSY---YRGA 79 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~ 79 (211)
-.|+|+|++|||||||++.|++........+..+.......+.+++ ...+.+||+||... +..+...+ .+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999998754322222222333333344443 35788999999742 22222222 4579
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237 80 AGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~ 157 (211)
+.+++++|++ ...+..+..+..++..+.. ...|.++++||+|+... ...+.+.......+++++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 5556666666666655432 36899999999998653 22344455555667899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028237 158 EAFIKTAATIYKK 170 (211)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (211)
+++++|.+.+.+.
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=1.4e-18 Score=133.23 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=85.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR------ 77 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 77 (211)
..++|+|+|.+|+|||||+|+|++..... ...+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 46899999999999999999999887532 2223323444444455555 68999999999877655444443
Q ss_pred ---CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCCCCCCH
Q 028237 78 ---GAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVST 131 (211)
Q Consensus 78 ---~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~~ 131 (211)
.+|++++|++++..........|+..+...... ..|+++|+||+|+.+.+....
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999998654222223566666554332 359999999999864444443
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=3.4e-19 Score=142.54 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=106.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEE---------------------------------------
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--------------------------------------- 46 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 46 (211)
..+|+|+|.+|||||||+|+|++..+.+.....++......
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 45999999999999999999999876433332221110000
Q ss_pred -------------EEEE-CCEEEEEEEEeCCCcchh-------------hhhhHHhhcCCcEEEEEEECCCHhhHHHHHH
Q 028237 47 -------------MITI-DNKPIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (211)
Q Consensus 47 -------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 99 (211)
.+.+ ......+.+|||||...+ ..+...|++.+|++|+|++..+.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 0000 011246899999997765 667888999999999999875433211 23
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 100 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
|+..+......+.|+++|+||+|+.+......+..+.+....+.+++++++..+.++.+.+..+...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 4444444444578999999999997655554554444445567789999999988887766554433
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=5.7e-20 Score=155.21 Aligned_cols=147 Identities=22% Similarity=0.199 Sum_probs=81.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-----------------------------CCCCceeEEEEEEEEECCEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDNKP 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+|+|++++|||||+++|++...... .....|++.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 3468999999999999999999964210000 00012333333334444445
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHANANMT-IMLIGNKCDL 123 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~ 123 (211)
..+.||||||++.|......++..+|++|+|+|+++. .+.+. +..+.. .+.| +||++||+|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~----l~~~~~---lgip~iIvviNKiDl 327 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH----AYLLRA---LGISEIVVSVNKLDL 327 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH----HHHHHH---SSCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH----HHHHHH---cCCCeEEEEEecccc
Confidence 7899999999999998888899999999999999853 22222 222222 2565 9999999998
Q ss_pred CCCCCCC----HHHHHHHH-HHcCC-----cEEEEecCCCCCHH
Q 028237 124 AHRRAVS----TEEGEQFA-KEHGL-----IFMEASAKTAQNVE 157 (211)
Q Consensus 124 ~~~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~g~~v~ 157 (211)
.+..... ..++..+. ...++ +++++||++|.|+.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 6522111 22334444 44454 69999999999998
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=8.5e-20 Score=142.49 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=88.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhC-CCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEeCCCc-------ch
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDK-RFQPVH--------DLTIGVEFGARMITIDNKPIKLQIWDTAGQ-------ES 67 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 67 (211)
+..++|+|+|++|+|||||+++|.+. .++... .++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 443322 111111111112222344578999999998 55
Q ss_pred hhhhhH-------HhhcC-------------CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 68 FRSITR-------SYYRG-------------AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 68 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
+..+.. .+++. +++++++.+++.. +++.+. ...+.... .+.|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 555544 44432 2345555554321 122221 12222222 367999999999986533
Q ss_pred CC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237 128 AV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173 (211)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~ 173 (211)
+. ..+++.++++.++++++++||+++ +++++|..+.+.+.+..+.
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 22 235678888999999999999999 9999999999988765543
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=3.7e-18 Score=142.30 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=79.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEeCC
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMITIDNKPIKLQIWDTA 63 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 63 (211)
+...+|+|+|++|+|||||+++|+....... .....+.+.......+....+.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3478999999999999999999986421110 00111222222222333334789999999
Q ss_pred CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
|+..|......+++.+|++|+|+|+++..... ...++..+ ...+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 99999988889999999999999998753222 12222222 224899999999999854
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=3.6e-18 Score=146.64 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=83.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------CC----------CCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PV----------HDLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (211)
.+...+|+|+|+.|+|||||+++|+..... .. .....+.......+.+. .+.+++|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence 356789999999999999999999842110 00 01111222222233333 47899999999
Q ss_pred cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+..|...+..+++.+|++|+|+|+++.........|.. +.. .+.|+++++||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99999999999999999999999998766665555443 333 3799999999999864
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=3.5e-18 Score=131.50 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=81.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH-------Hh--
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITR-------SY-- 75 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~-- 75 (211)
..++|+|+|.+|+|||||+|+|++..+...... .+.+.....+.+....+.+.+|||||+..+..+.. .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 468999999999999999999998775322211 12222222233333347899999999876543222 22
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCCCCCCH
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVST 131 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~~ 131 (211)
...+|++|+|+|++..........|+..+...... ..|+++|+||+|+...+....
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 34689999999987532111223566666544322 269999999999865443333
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=6.1e-18 Score=145.34 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=107.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEE-------EEEEEE--------------------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFG-------ARMITI-------------------------- 50 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~-------------------------- 50 (211)
..++|+|+|.+|+|||||+|+|++..... ...+++..... ..+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999877543 33333210000 001111
Q ss_pred --------------------CCEE--EEEEEEeCCCcch---hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHH
Q 028237 51 --------------------DNKP--IKLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 105 (211)
Q Consensus 51 --------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~ 105 (211)
.... ..+.||||||... .......+++.+|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 1000 3589999999765 34566788899999999999998877666555543332
Q ss_pred HhcCCCCcEEEEEecCCCCCCCCCCH---H-------HHHH-----HHHH--------cCCcEEEEecC-----------
Q 028237 106 QHANANMTIMLIGNKCDLAHRRAVST---E-------EGEQ-----FAKE--------HGLIFMEASAK----------- 151 (211)
Q Consensus 106 ~~~~~~~p~ivv~nK~D~~~~~~~~~---~-------~~~~-----~~~~--------~~~~~~~~sa~----------- 151 (211)
..+.|+++|+||+|+........ + .+.. +... ...+++++||+
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 23678999999999864321111 1 1111 1111 12369999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHH
Q 028237 152 ---TAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 152 ---~g~~v~~~~~~l~~~~~~~ 170 (211)
++.|+.+++..|.+.+...
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=3.5e-18 Score=134.20 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=69.4
Q ss_pred EEEEEEeCCCcch-------------hhhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237 55 IKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNK 120 (211)
Q Consensus 55 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK 120 (211)
..+.+|||||... +......++..+|++|+|+|..+.. .......+... ....+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~---~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE---VDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH---HCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHH---hCCCCCcEEEEEcC
Confidence 5799999999753 4567778899999999999974322 11111122222 22347899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCcEEEEecC---C---CCCHHHHHHHHHHHHHH
Q 028237 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAK---T---AQNVEEAFIKTAATIYK 169 (211)
Q Consensus 121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---g~~v~~~~~~l~~~~~~ 169 (211)
+|+.+......+.+.......+..++++++. + +.|+.+++..+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9997644322332221101112456665554 4 78889998887776643
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=2.2e-18 Score=139.08 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=47.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--I-------------------TIDN-KPIKLQIWDTAG 64 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G 64 (211)
++|+|+|.+|+|||||+|+|++........+.++.+..... + .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987743333332222222221 1 1222 257899999999
Q ss_pred cch----hhhhhH---HhhcCCcEEEEEEECCCH
Q 028237 65 QES----FRSITR---SYYRGAAGALLVYDITRR 91 (211)
Q Consensus 65 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 91 (211)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 233333 346889999999999875
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.73 E-value=1e-16 Score=137.84 Aligned_cols=118 Identities=18% Similarity=0.157 Sum_probs=82.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCC--CCCC-----------CC---CCceeEEEE--EEEEEC-----CEEEEEEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----------HD---LTIGVEFGA--RMITID-----NKPIKLQIW 60 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----------~~---~~~~~~~~~--~~~~~~-----~~~~~~~i~ 60 (211)
+...+|+|+|+.++|||||+++|+... +... .. ...+.+... ..+.+. +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999997531 1100 00 011222222 222222 234899999
Q ss_pred eCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
||||+..|...+..+++.+|++|+|+|+++.........| ..+.. .+.|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 9999999999999999999999999999986544433333 22222 3789999999999854
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=1e-18 Score=136.42 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=108.7
Q ss_pred HHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh-hHHHHH
Q 028237 21 CLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLA 98 (211)
Q Consensus 21 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 98 (211)
+|++++..+.|. ..+.+|++..+. .. +.... ++.+||+ ++++..++..|++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888888 888899885554 22 22222 7899999 8999999999999999999999999987 688888
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHH
Q 028237 99 SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 99 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
.|+..+.. .+.|+++|+||+|+.+... .++.+.+++.++ ++++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887654 3799999999999965332 245677777777 8999999999999999998875
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=9.8e-17 Score=137.83 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=82.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCC---C-------------CCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---H-------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
+...+|+|+|++|+|||||+++|+.. .+... . .+.++.......+.+. .+.++||||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 45789999999999999999999852 21100 0 0111122222223334 478999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
..|...+..+++.+|++|+|+|+++..+......|. .+.. .+.|+++++||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 999988999999999999999999866655544443 3333 3789999999999864
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=136.43 Aligned_cols=159 Identities=17% Similarity=0.224 Sum_probs=79.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------ 69 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 69 (211)
+..++|+|+|++|+|||||++.|.+..+.... .++.........+...+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45688999999999999999999987663211 1111211111111223334578999999976431
Q ss_pred -hh------------------hHHhhcCCcEEEEEEECCCH-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 70 -SI------------------TRSYYRGAAGALLVYDITRR-ETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 70 -~~------------------~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
.+ ...++.++++.+++|..... .+++... .|+..+. .+.|+|+|+||+|+....+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 11 12234445544444443321 1222222 3444442 3789999999999865433
Q ss_pred CCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237 129 VST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
+.. ..+..++..++++++++|+.++.++.++|..+.+.
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 332 56677788889999999999999999887776653
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.68 E-value=2.2e-17 Score=123.14 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=95.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEE------------EEEEEEEC------------------CEE
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------GARMITID------------------NKP 54 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~~ 54 (211)
...+|+|+|.+|+|||||+++|............+..++ ....+.++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 357899999999999999999986532111000000000 00011111 123
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 134 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (211)
..+.+|||+|..... ..+....+.+|+|+|+.+.... ...+... . +.|.++++||+|+.+......+++
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 568899999851110 1122356789999998764321 1111111 1 578999999999864333456666
Q ss_pred HHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 135 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 135 ~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
...+... +++++++||++|.|+.++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666554 46899999999999999999999877554
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=1.6e-17 Score=132.47 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=95.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC----cee----------------------EE----------------
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGV----------------------EF---------------- 43 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~----~~~----------------------~~---------------- 43 (211)
.++|+|+|.+|+|||||+|+|++..+.+..... .+. ++
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999998764222111 010 00
Q ss_pred -------EEEEEEEC-CEEEEEEEEeCCCcc-------------hhhhhhHHhhcCCc-EEEEEEECCCHhhHHHHHHHH
Q 028237 44 -------GARMITID-NKPIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLASWL 101 (211)
Q Consensus 44 -------~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~ 101 (211)
....+.+. .....+.||||||.. .+..+...|+...+ ++++|++.+....... +.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~~ 187 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---AL 187 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---HH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---HH
Confidence 00001111 113579999999953 34556777776666 5555666654322111 22
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH--HHHHcC-CcEEEEecCCCCCHHHHHHHHHHH
Q 028237 102 EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ--FAKEHG-LIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 102 ~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
..+......+.|+++|+||+|+.+......+..+. +....+ .+++++||+++.|+.++++.+.+.
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 22333334589999999999997543322222110 000122 247789999999999999998773
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=9.9e-16 Score=121.51 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=91.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchhh--
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESFR-- 69 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 69 (211)
++|+|+|.+|+|||||+|+|++..+.....+.++.......+.+.+. +..+.+||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999997754333332233322223444442 2579999999987653
Q ss_pred --hhh---HHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHH------------------------------
Q 028237 70 --SIT---RSYYRGAAGALLVYDITRR----------ETFNHLASWLEDA------------------------------ 104 (211)
Q Consensus 70 --~~~---~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l------------------------------ 104 (211)
.+. ..+++.+|++++|+|+++. +.++++..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 232 3357899999999999752 2222222111111
Q ss_pred ----------HH-------------------h-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 028237 105 ----------RQ-------------------H-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT 152 (211)
Q Consensus 105 ----------~~-------------------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (211)
.. + ....+|+++++|+.|..-......+.++.++...+++++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 0 013599999999999632112235667788888899999999763
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.65 E-value=3.6e-15 Score=124.88 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=80.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCC----------------------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRF----------------------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.=+|+|+|+.++|||||..+|+...- ..+..+ |+++....+.+.++++.++|+|||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreR--GITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERER--GISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHC--CCcEeeceEEEEECCEEEEEEeCC
Confidence 45899999999999999999863211 111122 333333333334445899999999
Q ss_pred CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
|+..|.......++-+|++|+|+|+...-..+....| ..+..+ +.|.++++||+|...
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence 9999999999999999999999999874433333333 344443 899999999999754
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=9.1e-16 Score=134.33 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=84.7
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhhCC------------CCC----CCCC--CceeEEEEEEEE------------ECC
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR------------FQP----VHDL--TIGVEFGARMIT------------IDN 52 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~~~------------~~~----~~~~--~~~~~~~~~~~~------------~~~ 52 (211)
.+...+|+|+|+.++|||||+++|+... +.. +..+ |+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3557899999999999999999998641 100 0111 111111111222 234
Q ss_pred EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
..+.++||||||+..|...+..+++.+|++|+|+|+++..+.+....|.... . .+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 4789999999999999999999999999999999999877666655554332 2 378999999999985
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=6.1e-17 Score=121.14 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=91.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE------------EEEEEEC-CEE-----------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMITID-NKP----------------- 54 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 54 (211)
..++|+|+|.+|||||||+++|....+.....++++.++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3689999999999999999999987655433333333322 1122221 111
Q ss_pred --EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237 55 --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 132 (211)
Q Consensus 55 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
..+.++|++|.-.. ...+-...+..+.++|......... ..... .+.|.++++||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 13444455442100 0011112334556666432111000 00011 15788999999998654345667
Q ss_pred HHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 133 EGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 133 ~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
++..++... +++++++||++|.|++++|++|.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777777654 5789999999999999999999887653
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=2.5e-15 Score=119.86 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=96.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-------------------EEEEEEEEeCCCcch
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-------------------KPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 67 (211)
++|+|+|.+|+|||||+|+|++........+..+.......+.+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998653222222212222222223321 246799999999765
Q ss_pred hh----hh---hHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHH--------------------------
Q 028237 68 FR----SI---TRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDA-------------------------- 104 (211)
Q Consensus 68 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l-------------------------- 104 (211)
.. .+ ...+++.+|++++|+|+.+. +..+++..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 22 23357899999999999751 1122111100000
Q ss_pred -------------HH-------------------hc-CCCCcEEEEEecCCC--CCC-CCCCHHHHHHHHHHcCCcEEEE
Q 028237 105 -------------RQ-------------------HA-NANMTIMLIGNKCDL--AHR-RAVSTEEGEQFAKEHGLIFMEA 148 (211)
Q Consensus 105 -------------~~-------------------~~-~~~~p~ivv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.. +. -..+|+++++|+.|. .+. .....+.++.+++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 00 124899999999984 221 1233567788888889999999
Q ss_pred ecCCCCCHHHHHHH
Q 028237 149 SAKTAQNVEEAFIK 162 (211)
Q Consensus 149 sa~~g~~v~~~~~~ 162 (211)
||+...++.+++..
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987666655543
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.61 E-value=2.5e-16 Score=125.64 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=70.4
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--H
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T 131 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 131 (211)
.+.+.||||||.... .......+|++|+|+|....+....+.. .-...|.++|+||+|+.+..... .
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHH
Confidence 367899999995432 2334588999999999876543322111 01246899999999985421110 1
Q ss_pred HHHHHHHH-------HcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 132 EEGEQFAK-------EHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 132 ~~~~~~~~-------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
.+...... .++.+++++||++|.|+++++++|.+.+...
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 11222111 1257899999999999999999999887664
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.60 E-value=1.5e-15 Score=127.31 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=80.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCCCC---CCCCCCceeEEEEEEEEECCE-----------------------E---
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMITIDNK-----------------------P--- 54 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~--- 54 (211)
+..++|+|+|.+|+|||||+|+|++..+. ....+++.... .+..... .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~---~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV---AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE---EEECCSSSEEECCC------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE---EEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 45689999999999999999999998764 33333321111 0100000 0
Q ss_pred --------------EEEEEEeCCCcch-----------hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC
Q 028237 55 --------------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 109 (211)
Q Consensus 55 --------------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~ 109 (211)
..+.||||||... +......++..+|++|+|+|+++....+....++..+. .
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~ 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---G 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---T
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---h
Confidence 2589999999764 55677788999999999999987544444445554443 2
Q ss_pred CCCcEEEEEecCCCCC
Q 028237 110 ANMTIMLIGNKCDLAH 125 (211)
Q Consensus 110 ~~~p~ivv~nK~D~~~ 125 (211)
.+.|+++|+||+|+.+
T Consensus 217 ~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVE 232 (550)
T ss_dssp CGGGEEEEEECGGGSC
T ss_pred cCCCEEEEEECCCccC
Confidence 3689999999999864
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8.1e-14 Score=111.14 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=100.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYR 77 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~ 77 (211)
...+|+|+|.||+|||||+|+|++........+.++.+.....+.+.+ .+++++|+||..... ......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999999877666667767777777788877 678899999963221 11223467
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCC--------CCCCCHHHHHHHHHHcCCcEEE
Q 028237 78 GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH--------RRAVSTEEGEQFAKEHGLIFME 147 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
.+|++++|+|+.+|.. ....+..++..... .+.|.++++||.|... ......+++..+...+.+..-+
T Consensus 149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 8999999999998753 22223333333221 4678899999999732 1234566666666665543222
Q ss_pred EecCCCCCHHHHH
Q 028237 148 ASAKTAQNVEEAF 160 (211)
Q Consensus 148 ~sa~~g~~v~~~~ 160 (211)
+-...+...+++.
T Consensus 227 v~~~~nv~eddl~ 239 (376)
T 4a9a_A 227 IAFRCDATVDDLI 239 (376)
T ss_dssp EEECSCCCHHHHH
T ss_pred eeecccCCHHHHH
Confidence 2223334444443
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=9.9e-16 Score=121.80 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (211)
.+.+.++||+|.... .......+|++++|+|+.++...+.+.. .+ ...|.++++||+|+.+.... ...
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 357889999996422 2334678999999999987543221111 11 24688999999998531100 011
Q ss_pred HHHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 134 GEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 134 ~~~~~~----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
...+.. .++.+++.+||++|.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 122211 224578999999999999999999887644
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=2.2e-15 Score=128.39 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=83.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCC--------CCC--C------CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PVH--D------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~--------~~~--~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
+-||+|+|+.++|||||..+|+...-. ... . ..-|++.....+.+..+++.++|+|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 358999999999999999998632110 000 0 001444444445555667899999999999999
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
......++-+|++|+|+|+...-..+. ...+..+..+ +.|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999987433222 2333444444 789999999999754
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=7.6e-14 Score=106.56 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=68.2
Q ss_pred EEEEEEeCCCcchhhhhhH------HhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+.+.||||||......... ..+.. +++++++|... +..+.....+.. ......+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL--LIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH--HHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH--HHhcccCCCeEEEEecccccc
Confidence 5789999999876543322 24455 88888888753 222222111111 111113689999999999864
Q ss_pred CCCCCHHHHHHH----------------------------HHHcC--CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 126 RRAVSTEEGEQF----------------------------AKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 126 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
... .++++.+ ++..+ ++++++||+++.|+++++++|.+.+..
T Consensus 186 ~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 321 1111111 23333 479999999999999999999877643
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.51 E-value=4.4e-13 Score=115.69 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=79.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhhCC--------CC----------CCCCCCceeEEEEEEEEECC-----EEEEEEEE
Q 028237 4 AYLFKYIIIGDTGVGKSCLLLQFTDKR--------FQ----------PVHDLTIGVEFGARMITIDN-----KPIKLQIW 60 (211)
Q Consensus 4 ~~~~~i~v~G~~~~GKStli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 60 (211)
+.+=+|+|+|+.++|||||..+|+... .. .+..+.+++.-....+.+.+ .++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 445699999999999999999986321 10 11122222222233334432 36899999
Q ss_pred eCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (211)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 124 (211)
|||||..|.......++-+|++|+|+|+...-..+.... +.....+ +.|.++++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHHH---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHHc---CCCeEEEEcccccc
Confidence 999999999999999999999999999987433333223 3333333 89999999999974
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=1.7e-14 Score=114.38 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=65.8
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--H
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T 131 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 131 (211)
.+.+.||||||....... ....+|++++|+|.......+.+.. .. .+.|.++|+||+|+.+..... .
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 367999999997654432 4689999999999976543211111 00 145789999999985421110 0
Q ss_pred HHHHHHHHHc-------CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 132 EEGEQFAKEH-------GLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 132 ~~~~~~~~~~-------~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
++........ ..+++++||++|.|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222222221 356899999999999999999998765
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=5.3e-14 Score=120.80 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=96.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeE-----------------------------------------
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVE----------------------------------------- 42 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~----------------------------------------- 42 (211)
...+|+|+|..++|||||+|.|++..+- ......+...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 3579999999999999999999997762 2221111000
Q ss_pred ---------EEEEEEEECCEEEEEEEEeCCCcch-------------hhhhhHHhh-cCCcEEEEEEECCCHhhHHHHHH
Q 028237 43 ---------FGARMITIDNKPIKLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLAS 99 (211)
Q Consensus 43 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 99 (211)
.....+...+ ...+.|+||||... ...+...|+ ..+|++++|+|++..........
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0001111111 23578999999543 233444454 57899999999987433222222
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----cC-CcEEEEecCCCCCHHHHHHHHHHH
Q 028237 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HG-LIFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 100 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
++.. ....+.|+++|+||+|+.+....... +.. .+. .+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~---L~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKE---VDPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHH---HCTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHH---HHhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2222 23347899999999999765433222 111 111 12 257789999999999999988764
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=3.7e-13 Score=104.96 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=78.6
Q ss_pred cchhhhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHHcC
Q 028237 65 QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAKEHG 142 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 142 (211)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...+++..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6677778888999999999999999986 78888888876654 389999999999996532211 344566677778
Q ss_pred CcEEEEecCCCCCHHHHHHHHH
Q 028237 143 LIFMEASAKTAQNVEEAFIKTA 164 (211)
Q Consensus 143 ~~~~~~sa~~g~~v~~~~~~l~ 164 (211)
++++++||++|.|++++|..+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998763
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.4e-11 Score=98.87 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=62.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcch--
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQES-- 67 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-- 67 (211)
..+|+|+|++|+|||||+|.|++... .....++++.......+.+.+. ...+.+||+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999999776 5555555555555556666542 14689999999542
Q ss_pred -----hhhhhHHhhcCCcEEEEEEECCC
Q 028237 68 -----FRSITRSYYRGAAGALLVYDITR 90 (211)
Q Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~~ 90 (211)
........++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455788999999999863
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=1.5e-12 Score=102.99 Aligned_cols=104 Identities=8% Similarity=0.026 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (211)
.+.+.|+||+|..... ......+|.+++|+|....+..+.+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 4678999999975432 1235789999999998654322111111 11 23557778999974311111111
Q ss_pred HHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 134 GEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 134 ~~~~~~~----------~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
.+++... ++.+++.+||+++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233221 2457899999999999999999988764
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=4.2e-13 Score=97.59 Aligned_cols=103 Identities=6% Similarity=-0.019 Sum_probs=69.4
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHH----HHhcC-CCCcEEEEEecC-CCCCCCCCCHHHHHH
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA----RQHAN-ANMTIMLIGNKC-DLAHRRAVSTEEGEQ 136 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l----~~~~~-~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 136 (211)
+|++..+.+|++||.++|++|||+|.+|.+..+ ....+..+ ..... .+.|++|++||. |+++ .++..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 378889999999999999999999999876543 22222222 22211 478999999995 6743 456666544
Q ss_pred HHHH----cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237 137 FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIY 168 (211)
Q Consensus 137 ~~~~----~~~~~~~~sa~~g~~v~~~~~~l~~~~~ 168 (211)
.... +.+.++.|||.+|+|+.+.++||.+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3322 3466999999999999999999987553
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=7.5e-13 Score=106.02 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=52.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchhhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESFRS 70 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~ 70 (211)
.++|+|+|.+|+|||||+|+|++..+.....++++.......+.+.+. ...+.+||+||......
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 578999999999999999999988765555555555555555555442 23599999999776443
Q ss_pred -------hhHHhhcCCcEEEEEEECCCH
Q 028237 71 -------ITRSYYRGAAGALLVYDITRR 91 (211)
Q Consensus 71 -------~~~~~~~~~d~~i~v~d~~~~ 91 (211)
.+..+++.+|++++|+|+.+.
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC---
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 456678999999999998753
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=93.92 Aligned_cols=106 Identities=6% Similarity=-0.009 Sum_probs=74.8
Q ss_pred CCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHH---HHHHHHHHHHHhc-CCCCcEEEEEec-CCCCCCCCCCHHHHHH
Q 028237 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFN---HLASWLEDARQHA-NANMTIMLIGNK-CDLAHRRAVSTEEGEQ 136 (211)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~l~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~ 136 (211)
.+|++..+.+|++||+++|++|||+|.+|.+.++ ++.++...+.... -.+.|++|++|| .|+++ .++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4578889999999999999999999999977544 2222212232221 248999999997 58754 456665544
Q ss_pred HHHH----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237 137 FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK 169 (211)
Q Consensus 137 ~~~~----~~~~~~~~sa~~g~~v~~~~~~l~~~~~~ 169 (211)
.... +.+.++.+||.+|+|+.+.++||.+.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 3322 34569999999999999999999987643
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=3.9e-10 Score=90.14 Aligned_cols=96 Identities=25% Similarity=0.331 Sum_probs=74.3
Q ss_pred CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHH----HH
Q 028237 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF----AK 139 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 139 (211)
..+.|.+.+..+++.++++++|+|+.++. ..|...+..... +.|+++|+||+|+.+.. ...+...++ ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 46789999999999999999999999864 345555555543 78999999999996533 334444433 56
Q ss_pred HcCC---cEEEEecCCCCCHHHHHHHHHHH
Q 028237 140 EHGL---IFMEASAKTAQNVEEAFIKTAAT 166 (211)
Q Consensus 140 ~~~~---~~~~~sa~~g~~v~~~~~~l~~~ 166 (211)
..++ +++.+||++|.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999998664
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=2.4e-09 Score=86.61 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=69.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC--CceeEEEEEEEEE--CCEEEEEEEEeCCCcchh-------------
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITI--DNKPIKLQIWDTAGQESF------------- 68 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~------------- 68 (211)
.++++|+|++|+|||||+|.|.+..+...... ..+.......+.. .+....+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 36799999999999999999998754221111 1112221222222 222347889999985321
Q ss_pred -hhhh----HHhh---------cC--Cc-EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-
Q 028237 69 -RSIT----RSYY---------RG--AA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS- 130 (211)
Q Consensus 69 -~~~~----~~~~---------~~--~d-~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~- 130 (211)
...+ ..+. .. +| +++|+.|....-+..+ +..+... ..+.|+|+|.||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccchHHHHH
Confidence 0111 1111 11 23 3556666654333222 1222222 2589999999999975422110
Q ss_pred -HHHHHHHHHHcCCcEEEEec
Q 028237 131 -TEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~sa 150 (211)
...+.......|++++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 11122222335677777774
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.93 E-value=6.4e-11 Score=94.74 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=83.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC------CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK------RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------IT 72 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~ 72 (211)
.+|+++|.+|+|||||+|+|++. .......+ +++.....+.+.. .+.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999976 22222222 3333344454443 267999999542221 12
Q ss_pred HHhh--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237 73 RSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 73 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (211)
..++ ...++++++++....-....+.. +......+.|+++++||.|..+... .....+.+.+..+..+...++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCCCCc
Confidence 2222 66789999998842210000000 1112234789999999999865332 233345566667777776666
Q ss_pred CCCCCH
Q 028237 151 KTAQNV 156 (211)
Q Consensus 151 ~~g~~v 156 (211)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 654444
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=2.6e-09 Score=85.40 Aligned_cols=98 Identities=22% Similarity=0.224 Sum_probs=72.6
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHH----H
Q 028237 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF----A 138 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~ 138 (211)
..++.|.+...++++.++++++|+|+.++.. .|...+..... +.|+++|+||+|+.+.. ...+..+.+ +
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 3578899999999999999999999999773 33444444332 78999999999996532 334444443 5
Q ss_pred HHcCC---cEEEEecCCCCCHHHHHHHHHHHH
Q 028237 139 KEHGL---IFMEASAKTAQNVEEAFIKTAATI 167 (211)
Q Consensus 139 ~~~~~---~~~~~sa~~g~~v~~~~~~l~~~~ 167 (211)
+..++ +++.+||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55676 689999999999999999887643
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.89 E-value=4.7e-11 Score=95.49 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=77.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC-----CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hhH
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-----PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------ITR 73 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~ 73 (211)
.+|+++|.+|+|||||+|+|++.... .......+++.....+.+... +.++||||...... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 57999999999999999999886321 111222344444555555442 77999999643221 111
Q ss_pred Hh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237 74 SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 74 ~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (211)
.+ ....+..+++++.........+. .+......+.|+++++||.|..+... .....+.+.+..+..+++.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence 22 35677888888874211000000 01112234789999999999865332 233344555666766555554
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=4.7e-08 Score=78.96 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=82.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc-eeEE--EEEEEEECCEEEEEEEEeCCCcchhhh-----hhHHhhc
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEF--GARMITIDNKPIKLQIWDTAGQESFRS-----ITRSYYR 77 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~ 77 (211)
...++|+|++|||||||+|.+.+...+..-.... +... ...... ......+.+||++|...... +....+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999999843322211111 1111 001111 11112578999998542211 1111233
Q ss_pred CCcEEEEEEECCC--HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-------CCCCCCHHHH----HHHH----HH
Q 028237 78 GAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLIGNKCDLA-------HRRAVSTEEG----EQFA----KE 140 (211)
Q Consensus 78 ~~d~~i~v~d~~~--~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~ 140 (211)
..+..++ ++... ..... +...+.. .+.|++++.||.|+. .-+.....++ .++. .+
T Consensus 148 ~~~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GCSEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3455554 77762 22211 1122222 278999999999963 1122233333 3333 12
Q ss_pred cC---CcEEEEec--CCCCCHHHHHHHHHHHH
Q 028237 141 HG---LIFMEASA--KTAQNVEEAFIKTAATI 167 (211)
Q Consensus 141 ~~---~~~~~~sa--~~g~~v~~~~~~l~~~~ 167 (211)
.+ ..++.+|+ ..+.|++++.+.+.+.+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 22 24788999 55567999888887665
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=3e-09 Score=82.00 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=70.6
Q ss_pred EEeCCCcc-hhhhhhHHhhcCCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH
Q 028237 59 IWDTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 135 (211)
Q Consensus 59 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 135 (211)
|-..||+. .........+..+|++++|+|+.+|.+.. .+..++ .++|.++++||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34578875 44556777789999999999999987654 233332 378999999999996421 112223
Q ss_pred HHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237 136 QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170 (211)
Q Consensus 136 ~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~ 170 (211)
++.+..+++++.+||.++.|+.+++..+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999888777654
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.88 E-value=3.9e-10 Score=93.23 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=83.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHh------hCCCC----CCCCCC-----------ceeEEEEEEEE-------------E
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFT------DKRFQ----PVHDLT-----------IGVEFGARMIT-------------I 50 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 50 (211)
....|+|+|.+||||||+++.|. +.+.. +.+.+. .+..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999997 32210 000000 01111110000 0
Q ss_pred CCEEEEEEEEeCCCcchhh-hhh---HHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q 028237 51 DNKPIKLQIWDTAGQESFR-SIT---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDL 123 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~ 123 (211)
....+.+.|+||||..... .+. ..+ +..+|.+++|+|........ .....+.. ..|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 0024678999999965322 111 111 23789999999998643311 11222222 1464 899999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCcE------------------EEEecCCCCC-HHHHHHHHHHH
Q 028237 124 AHRRAVSTEEGEQFAKEHGLIF------------------MEASAKTAQN-VEEAFIKTAAT 166 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~g~~-v~~~~~~l~~~ 166 (211)
..... . ........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g--~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG--G--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT--H--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH--H--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53221 1 222334445443 2368888988 98888888765
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=1.1e-08 Score=78.33 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=69.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-------CCceeEEEEEEEEEC--CEEEEEEEEeCCCcchh-------h
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMITID--NKPIKLQIWDTAGQESF-------R 69 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~-------~ 69 (211)
.++++|+|++|||||||+|.|.+...+..-. ...........+... +-...+.++|++|.... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998753322110 000000001111111 11236789999984210 0
Q ss_pred hh----h---HH--------------hhcCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 70 SI----T---RS--------------YYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 70 ~~----~---~~--------------~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+ . .. ....+++.++++|... +-.... ...+..+ ... .++++|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence 00 0 00 1123578888888542 211111 2222222 223 8999999999975432
Q ss_pred CC--CHHHHHHHHHHcCCcEEE
Q 028237 128 AV--STEEGEQFAKEHGLIFME 147 (211)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~ 147 (211)
+. ....+.......++.++.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 21 122334445566777654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.59 E-value=4.8e-08 Score=75.25 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=36.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..++|+++|.+|+|||||+|+|.+........ ..+++.....+.... .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 45899999999999999999999876432222 223333333344433 57899999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.52 E-value=3.4e-08 Score=75.26 Aligned_cols=57 Identities=26% Similarity=0.437 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+.... .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5899999999999999999998765322 22234444333343332 578999999654
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=1.6e-06 Score=70.44 Aligned_cols=86 Identities=16% Similarity=0.042 Sum_probs=51.8
Q ss_pred EEEEEEeCCCcchhhh-----hhH-HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
+.+.|+||+|...... +.. .....+|.+++|+|......... ....+... -.+..||+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcc---
Confidence 6788999999543221 111 12335789999999876433222 12222222 345679999999743
Q ss_pred CCHHHHHHHHHHcCCcEEEEec
Q 028237 129 VSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa 150 (211)
..-.+..+....+.|+..++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 233455666678889777765
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.36 E-value=7.1e-08 Score=73.50 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=62.0
Q ss_pred CCCcch-hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028237 62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
.||+.. ........+.++|++|+|+|+.+|.+..... +. .. ++|.++|+||+|+.+.. ..+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD----FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 466543 2345667789999999999999887643211 11 11 78999999999996421 11223344455
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHH
Q 028237 141 HGLIFMEASAKTAQNVEEAFIKTAA 165 (211)
Q Consensus 141 ~~~~~~~~sa~~g~~v~~~~~~l~~ 165 (211)
.++++ .+||.++.|+.+++..+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999998887654
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.24 E-value=1.5e-06 Score=73.23 Aligned_cols=63 Identities=21% Similarity=0.128 Sum_probs=40.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-CceeEEEEEEEE--E-CCEEEEEEEEeCCCcch
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMIT--I-DNKPIKLQIWDTAGQES 67 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~i~D~~G~~~ 67 (211)
..++|+|+|.+|+|||||+|+|++......... +.+.+.....+. . ......+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 467899999999999999999998764321111 112222222221 1 12345788999999653
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.22 E-value=6e-06 Score=70.15 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCCCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ 32 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~~~ 32 (211)
..|+|+|++|||||||++.+.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 35999999999999999999986433
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=5.9e-06 Score=64.00 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=56.5
Q ss_pred EEEEEEEeCCCcch--hh-hhhH-----HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q 028237 54 PIKLQIWDTAGQES--FR-SITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLA 124 (211)
Q Consensus 54 ~~~~~i~D~~G~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~ 124 (211)
.+.+.|+||||... .. .+.. .....+|.+++|+|...... .......+.. ..| ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35789999999766 32 1221 23457899999999864321 1122222222 345 77899999974
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~ 158 (211)
. ....+..+....+.|+..++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 23445667778888977766 4655544
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.18 E-value=7.5e-06 Score=66.64 Aligned_cols=84 Identities=17% Similarity=0.073 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCcchhhh-hh---HHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCC-c-EEEEEecCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS-IT---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-T-IMLIGNKCDLAH 125 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~D~~~ 125 (211)
.+.+.|+||||...... +. ... +..+|.+++|+|...... .... ..... ... | ..+|+||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHH-TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHh-hcccCCeEEEEeCCCCcc
Confidence 46788999999654321 11 111 236889999999875432 1111 22222 234 5 889999999743
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEE
Q 028237 126 RRAVSTEEGEQFAKEHGLIFMEA 148 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
. ......+....+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 122344666677775544
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.18 E-value=4.2e-07 Score=70.61 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=60.5
Q ss_pred hhhHHhhcCCcEEEEEEECCCHhhHH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEE
Q 028237 70 SITRSYYRGAAGALLVYDITRRETFN-HLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLIFM 146 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~ 146 (211)
.+.+..+.++|.+++|+|+.+|.... .+..++.... ..++|.++|+||+|+.+... ...+....+....+.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 34455789999999999999776433 3333322221 24889999999999965321 012334445556688999
Q ss_pred EEecCCCCCHHHHHHH
Q 028237 147 EASAKTAQNVEEAFIK 162 (211)
Q Consensus 147 ~~sa~~g~~v~~~~~~ 162 (211)
.+||.++.|+++++..
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999888766554
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.17 E-value=5.3e-06 Score=67.36 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=54.5
Q ss_pred EEEEEEEeCCCcch--hh----hhhHH--hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237 54 PIKLQIWDTAGQES--FR----SITRS--YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (211)
Q Consensus 54 ~~~~~i~D~~G~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 125 (211)
.+.+.|+||||... .. ..... .....+.+++|+|......... ....+... -.+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence 46788999999543 11 11111 1225689999999976433222 22222222 246789999999742
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v 156 (211)
..-.+..+....+.|+..++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 344456666678999877775 5554
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.08 E-value=9.4e-06 Score=64.29 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=54.1
Q ss_pred hhcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCcEEEEecCC
Q 028237 75 YYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEHGLIFMEASAKT 152 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~ 152 (211)
...++|.+++|.+.. |.. ...+..++..... .++|.++|+||+|+.+.... ..+.........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 367899999887754 543 3333333332222 27888999999999653210 01112233345688999999999
Q ss_pred CCCHHHHHHH
Q 028237 153 AQNVEEAFIK 162 (211)
Q Consensus 153 g~~v~~~~~~ 162 (211)
+.|+.++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987764
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=2.6e-05 Score=61.19 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=52.1
Q ss_pred EEEEEEeCCCcchhhh-----hhH-HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237 55 IKLQIWDTAGQESFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.+.|++|...... +.. .-.-..|-.++++|..... .+......+... -...++++||.|...
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~it~iilTKlD~~a--- 282 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VKIDGIILTKLDADA--- 282 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SCCCEEEEECGGGCS---
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cCCCEEEEeCcCCcc---
Confidence 3456789999643221 111 0122468889999976443 222223333322 123478889999532
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237 129 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~ 159 (211)
..-.+..+....+.|+..++ +|++++++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 23335567777789877776 66665443
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.78 E-value=1.6e-06 Score=71.43 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--hhhh--------HHh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--RSIT--------RSY 75 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~--------~~~ 75 (211)
.+.|+++|.+||||||+.++|........ ..+.............+......+||..|.+.+ ...+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999875422110 111010000000000111123457898886322 2222 556
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 028237 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 119 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~n 119 (211)
+...++.++|+|.++. +.+....|+..+... +.+++.+-.
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~ 157 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVES 157 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEE
Confidence 6667888999999987 344445565555544 344554443
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.66 E-value=5.6e-05 Score=61.59 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..-|.|+|++++|||||+|.|++.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 456899999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=4e-05 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.772 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
++++|+|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.46 E-value=7.2e-05 Score=54.61 Aligned_cols=29 Identities=31% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
|+......|+|+|++|||||||++.|.+.
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56566678999999999999999998763
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.39 E-value=0.00011 Score=58.28 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997654
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.37 E-value=9.9e-05 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.37 E-value=9.8e-05 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|+|++|||||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999763
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.34 E-value=0.00039 Score=53.88 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++++|++|||||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47899999999999999998 53
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.34 E-value=0.00012 Score=53.11 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
|+......|+|+|++||||||+++.|.+..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 555555679999999999999999998754
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=6.2e-05 Score=58.44 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998753
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.33 E-value=0.00012 Score=52.56 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999854
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.30 E-value=0.00013 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.30 E-value=0.00013 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998653
No 247
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.28 E-value=0.0021 Score=52.31 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred EEEEEEEeCCCcchhh-hhhH-----HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC
Q 028237 54 PIKLQIWDTAGQESFR-SITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHR 126 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~ 126 (211)
.+.+.|+||||..... .+.. .....++.+++|+|....... ......+.. ..+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 4678899999965432 1111 224478899999998753221 112222221 233 3578999997432
Q ss_pred CCCCHHHHHHHHHHcCCcEE
Q 028237 127 RAVSTEEGEQFAKEHGLIFM 146 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~ 146 (211)
. ..+..+....+.|+.
T Consensus 256 ~----g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIK 271 (433)
T ss_dssp C----THHHHHHHHHCCCEE
T ss_pred H----HHHHHHHHHHCCCeE
Confidence 2 233455555566633
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.24 E-value=0.00014 Score=51.47 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028237 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~ 27 (211)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.24 E-value=0.00018 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-.|+|+|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999875
No 250
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=0.00018 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..-.|+|+|++|||||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999998753
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.23 E-value=0.00018 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998754
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00018 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998753
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.23 E-value=0.00017 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998743
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.20 E-value=0.00018 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998653
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.16 E-value=0.00021 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.16 E-value=0.00022 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998754
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.13 E-value=0.00026 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=0.00032 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999864
No 259
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.10 E-value=0.00027 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.10 E-value=0.00027 Score=54.02 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 261
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.10 E-value=0.00029 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998653
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.09 E-value=0.00027 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.07 E-value=0.00029 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.06 E-value=0.0003 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.05 E-value=0.00033 Score=50.13 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.05 E-value=0.00033 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.04 E-value=0.00032 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998653
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.04 E-value=0.00033 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 269
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.00034 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.03 E-value=0.00044 Score=52.57 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.03 E-value=0.00048 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.03 E-value=0.00034 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 273
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.02 E-value=0.00028 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.02 E-value=0.00037 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00039 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|+|++|||||||.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.02 E-value=0.00039 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.02 E-value=0.00036 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.01 E-value=0.00038 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.00 E-value=0.00039 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 280
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.97 E-value=0.0004 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999875
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.97 E-value=0.00046 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 282
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.95 E-value=0.00043 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 283
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.95 E-value=0.00043 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 284
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.95 E-value=0.00057 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 285
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.95 E-value=0.00043 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998653
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.94 E-value=0.00048 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.94 E-value=0.00051 Score=51.41 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~ 27 (211)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.92 E-value=0.00053 Score=48.03 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 028237 7 FKYIIIGDTGVGKSCLLLQF 26 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l 26 (211)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 289
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.92 E-value=0.00051 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.91 E-value=0.00049 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998753
No 291
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00058 Score=48.76 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=22.7
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.......|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3334568999999999999999998654
No 292
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.91 E-value=0.00069 Score=48.33 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
|+..-...|+|.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 5555556799999999999999998864
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.90 E-value=0.00054 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999998864
No 294
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.89 E-value=0.00055 Score=50.07 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 295
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.0006 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 296
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.87 E-value=0.00062 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.87 E-value=0.00056 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...-|+|+|++|||||||++.|.+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3567999999999999999998764
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.87 E-value=0.00069 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 299
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.86 E-value=0.0006 Score=50.83 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028237 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~ 27 (211)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 300
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00069 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.85 E-value=0.00065 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 302
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.00059 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 303
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.84 E-value=0.00075 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++++|++|||||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 478999999999999999987543
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.83 E-value=0.00076 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
..-|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999876
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.81 E-value=0.00073 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-++|+|++|||||||++.|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00087 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.80 E-value=0.00045 Score=51.18 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=15.0
Q ss_pred eEEEEcCCCCCHHHHHHHHh-hC
Q 028237 8 KYIIIGDTGVGKSCLLLQFT-DK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~-~~ 29 (211)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.79 E-value=0.00066 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999865
No 309
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.78 E-value=0.00075 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998653
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00082 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.78 E-value=0.00064 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|+|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 312
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.00094 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998754
No 313
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.76 E-value=0.00077 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998753
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.75 E-value=0.00088 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 315
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.75 E-value=0.0007 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 316
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00091 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 317
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.74 E-value=0.00054 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999998864
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.74 E-value=0.0008 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 319
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.74 E-value=0.00085 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=21.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
....|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.0011 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.73 E-value=0.00071 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..-|+|+|++|||||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998654
No 322
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.73 E-value=0.00085 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.72 E-value=0.00089 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.72 E-value=0.001 Score=47.47 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 325
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.71 E-value=0.00086 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998753
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.71 E-value=0.00089 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998754
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.0009 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998753
No 328
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.00047 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.001 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 330
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.67 E-value=0.00097 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999998753
No 331
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.66 E-value=0.001 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998653
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.0012 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 333
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.0012 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 334
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.0011 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998753
No 335
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.60 E-value=0.0014 Score=47.22 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.60 E-value=0.0014 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
..++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999863
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.59 E-value=0.0016 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...|+|+|++|||||||.+.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999764
No 338
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.59 E-value=0.0013 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 339
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.58 E-value=0.00081 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998653
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.58 E-value=0.0012 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..-|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998763
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.58 E-value=0.0013 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0015 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998854
No 343
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.58 E-value=0.0017 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...-|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.57 E-value=0.0014 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 345
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.55 E-value=0.0014 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.54 E-value=0.0016 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 347
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=52.78 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999999864
No 348
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.54 E-value=0.0013 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.54 E-value=0.001 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.53 E-value=0.0014 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
--|+|+|++|||||||++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999864
No 351
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0014 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
--++++|++||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0018 Score=46.71 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=20.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 353
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.52 E-value=0.0019 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.++-|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999864
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.51 E-value=0.0014 Score=46.14 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 356
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.51 E-value=0.0018 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 357
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0016 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.3
Q ss_pred cceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 3 YAYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 3 ~~~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
....+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34467899999999999999998865
No 358
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.50 E-value=0.0017 Score=45.96 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|.+||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.50 E-value=0.0015 Score=48.17 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
No 360
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0017 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|++|||||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.48 E-value=0.0014 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999865
No 362
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.46 E-value=0.0076 Score=40.99 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999887654
No 363
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.45 E-value=0.00081 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.45 E-value=0.0014 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 365
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.44 E-value=0.0013 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..-|+|.|+.|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999998865
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.44 E-value=0.0018 Score=46.21 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.43 E-value=0.0018 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 368
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.43 E-value=0.0046 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~ 27 (211)
...=|.|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34567799999999999999664
No 369
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0015 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|+|++|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999998764
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.42 E-value=0.0019 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 371
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0041 Score=45.86 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.6
Q ss_pred eEEEE--cCCCCCHHHHHHHHhhC
Q 028237 8 KYIII--GDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~--G~~~~GKStli~~l~~~ 29 (211)
||+|+ |.++.|||+|++++.+.
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred ceEEEecCcccccHHHHHHHHhcc
Confidence 55555 99999999999999976
No 372
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.41 E-value=0.0022 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=21.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
....|+|.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999964
No 373
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.40 E-value=0.0017 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.40 E-value=0.002 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-.+|+|++|||||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.39 E-value=0.0025 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
....|+|+|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.39 E-value=0.0014 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.--++|+|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3457899999999999999999764
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.39 E-value=0.002 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 378
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.38 E-value=0.002 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
+++|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999874
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.37 E-value=0.0021 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 380
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.36 E-value=0.002 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|+|||||++.+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.35 E-value=0.0022 Score=48.23 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~ 27 (211)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 383
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.35 E-value=0.0021 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999854
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.34 E-value=0.0027 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|.+||||||+.+.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 385
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.0027 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 386
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.34 E-value=0.0021 Score=46.58 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 387
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.33 E-value=0.002 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998654
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.00087 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.31 E-value=0.0027 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 390
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0023 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
--|+|+|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3689999999999999999864
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.29 E-value=0.0026 Score=44.99 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999865
No 392
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.28 E-value=0.0028 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999864
No 393
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.27 E-value=0.0025 Score=44.57 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 394
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.25 E-value=0.0035 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.+...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987543
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.25 E-value=0.0027 Score=47.00 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 396
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0032 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
-++|+|++|||||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.24 E-value=0.0023 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 398
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.24 E-value=0.0025 Score=52.53 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcchhhh-----hh--HHhh-----cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237 55 IKLQIWDTAGQESFRS-----IT--RSYY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~-----~~--~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 122 (211)
+.+.|+||+|...... +. .... ...+-+++|+|.+.... .......+.... +. ..+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~i-tgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--GL-TGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--CC-SEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--CC-CEEEEEcCC
Confidence 4577899999642211 11 1111 13567888999764322 112222232221 22 357889999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~ 158 (211)
-.. ..-.+..+....+.++..+. .|.++++
T Consensus 450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GCS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Ccc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 532 22345566677788866543 4444543
No 399
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0022 Score=48.19 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....|+++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998653
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.0025 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 401
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.015 Score=45.57 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
.++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998876
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.20 E-value=0.0027 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
No 403
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.20 E-value=0.0019 Score=45.68 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=16.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.19 E-value=0.0033 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988654
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.0037 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.|+|+|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.0031 Score=46.33 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 028237 9 YIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~ 28 (211)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988864
No 407
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0039 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.+-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 479999999999999999987543
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.14 E-value=0.0036 Score=43.69 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998854
No 409
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.12 E-value=0.0031 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.11 E-value=0.0034 Score=46.45 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 411
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.10 E-value=0.0034 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.09 E-value=0.0038 Score=42.95 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028237 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~ 27 (211)
.+|+|++|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999974
No 413
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.07 E-value=0.0035 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
+++|+|++|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998764
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.06 E-value=0.0035 Score=47.12 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.06 E-value=0.0049 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....|+|.|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998753
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.03 E-value=0.0039 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.01 E-value=0.0041 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 418
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.01 E-value=0.0052 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 589999999999999999987543
No 419
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.99 E-value=0.0043 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
..++++|+|++||||||+.+.|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999998854
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.97 E-value=0.0051 Score=45.53 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998754
No 421
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.97 E-value=0.0039 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999865
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0045 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
.+.|+|.|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999873
No 423
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.92 E-value=0.0046 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-.|+|.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998754
No 424
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.90 E-value=0.0051 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999987543
No 425
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.90 E-value=0.0053 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987543
No 426
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.89 E-value=0.0059 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987643
No 427
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.89 E-value=0.0057 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 428
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.86 E-value=0.0041 Score=43.72 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.84 E-value=0.0057 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.83 E-value=0.005 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
-.++|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.83 E-value=0.0049 Score=46.89 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 432
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.82 E-value=0.0058 Score=44.90 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988653
No 433
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.82 E-value=0.016 Score=41.63 Aligned_cols=85 Identities=11% Similarity=-0.009 Sum_probs=56.2
Q ss_pred EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCCCCCHH
Q 028237 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTE 132 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
+.+.++|+|+.. .......+..+|.+|+++..+... ..+..++..+.... ..+.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 678899999866 334555677799999999887554 55666666665443 245678999999995322 223
Q ss_pred HHHHHHHHcCCcEE
Q 028237 133 EGEQFAKEHGLIFM 146 (211)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (211)
+..++.+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555565543
No 434
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.78 E-value=0.004 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 435
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.73 E-value=0.0069 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988754
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.73 E-value=0.0058 Score=48.53 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028237 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~ 27 (211)
++|+|++|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999976
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.73 E-value=0.0031 Score=48.48 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=18.2
Q ss_pred CCcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
|+.. .+-|+|.|+.||||||+.+.|..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 5543 34599999999999999998864
No 438
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.72 E-value=0.0046 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998653
No 439
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.71 E-value=0.0039 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988865
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0071 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~ 31 (211)
++|+|++|||||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987643
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.66 E-value=0.0084 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 442
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.61 E-value=0.068 Score=38.69 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=57.0
Q ss_pred EEEEEEEeCCCc-chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237 54 PIKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 132 (211)
Q Consensus 54 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
.+.+.++|+|+. ... .....+..+|.+|+++..+ ..+...+..++..+.... +.++.+|+|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 367889999986 432 3445677899999999876 555666666666665533 5668899999986420 1234
Q ss_pred HHHHHHHHcCCcEE
Q 028237 133 EGEQFAKEHGLIFM 146 (211)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (211)
+..+..++.+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 55555555665544
No 443
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.57 E-value=0.0053 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 444
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.53 E-value=0.0079 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 445
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.52 E-value=0.0074 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-+.|+|++|+|||||++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 446
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.50 E-value=0.0078 Score=46.38 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCcchhhh--hh--HHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237 54 PIKLQIWDTAGQESFRS--IT--RSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
...+.|.||+|...... +. ...+. ..+.+++|+|.+.. ...+..+...+. ..+ ..-+++||.|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~- 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS- 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc-
Confidence 35788999999764432 11 12232 35678889987642 122333222221 112 23566799997432
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 028237 128 AVSTEEGEQFAKEHGLIFMEAS 149 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (211)
...+.......++|+..+.
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2356667777888855443
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.47 E-value=0.0082 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..-|+|+|++||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999998753
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.46 E-value=0.0091 Score=40.67 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...|+|.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999998764
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.46 E-value=0.0093 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~ 28 (211)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 450
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.45 E-value=0.0083 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-.|+|.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999764
No 451
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.45 E-value=0.0091 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 452
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.43 E-value=0.0089 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 453
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.40 E-value=0.009 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999754
No 454
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.37 E-value=0.01 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~~ 31 (211)
.++|+|++|||||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986543
No 455
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.37 E-value=0.0013 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~~~ 31 (211)
++|+|++|||||||++.+.+-..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999876433
No 456
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.37 E-value=0.0092 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.|+|.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999998864
No 457
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.37 E-value=0.0081 Score=43.65 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
.+++.|++|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888764
No 458
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.37 E-value=0.0099 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.|+|.|++|+|||+|++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998753
No 459
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.32 E-value=0.01 Score=45.92 Aligned_cols=86 Identities=22% Similarity=0.182 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcchhhh-hh------HHhh-----cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237 55 IKLQIWDTAGQESFRS-IT------RSYY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 122 (211)
+.+.|.|+||...... +. ...+ ...+.+++|+|..... +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 4588999999532221 10 1111 2478889999987332 22222 12222221 2 3456789999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237 123 LAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (211)
.... .-.+..+....+.|+..+..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 6322 23367778888888766653
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.32 E-value=0.011 Score=42.84 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028237 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~ 27 (211)
.+|+|++|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999863
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.31 E-value=0.012 Score=43.28 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=21.5
Q ss_pred CcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237 2 SYAYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~ 28 (211)
......-|+|.|.+||||||+++.|..
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567799999999999999998864
No 462
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.31 E-value=0.0071 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhhCC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.++|+|++|||||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998763
No 463
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.30 E-value=0.044 Score=42.62 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999654
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.28 E-value=0.011 Score=42.71 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 465
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.015 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~ 27 (211)
..+|+|+|++|+||||+.+.|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999998764
No 466
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.26 E-value=0.12 Score=38.06 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=60.3
Q ss_pred EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (211)
.+.+.|+|+|+... ......+..+|.+|+++..+ ..+...+..+++.+.........+.+|+|+.+... ....+
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~- 191 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD- 191 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH-
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH-
Confidence 36688999987542 24555677899999999876 66677777777777654333456889999998643 23333
Q ss_pred HHHHHHHcCCcEEEEecCC
Q 028237 134 GEQFAKEHGLIFMEASAKT 152 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~sa~~ 152 (211)
.+.+..+.+++.+-..+
T Consensus 192 --~~~~~~~~~v~~~ip~~ 208 (245)
T 3ea0_A 192 --EIEKVIGRPISKRIPQD 208 (245)
T ss_dssp --HHHHHHTSCEEEEECCC
T ss_pred --HHHHHhCCCeEEECCCC
Confidence 34445677766554333
No 467
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.25 E-value=0.01 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.++|.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998753
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.22 E-value=0.013 Score=54.12 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
+|+|+|++|||||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7999999999999999999853
No 469
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.011 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 470
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.15 E-value=0.013 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
+.-+++.|++|+|||+|.+.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999998754
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.11 E-value=0.0094 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999888754
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.013 Score=45.88 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998764
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.05 E-value=0.012 Score=49.03 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--Hhh
Q 028237 9 YIIIGDTGVGKSCLLLQ--FTD 28 (211)
Q Consensus 9 i~v~G~~~~GKStli~~--l~~ 28 (211)
++|+|++|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.04 E-value=0.013 Score=45.96 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999998864
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.02 E-value=0.014 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.01 E-value=0.014 Score=42.45 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
+.|+|.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 477
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.01 E-value=0.0084 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...|+|+|++|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357899999999999999998764
No 478
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.99 E-value=0.015 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
..++|.|++|+|||+|++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999986543
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.98 E-value=0.017 Score=42.91 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...|+|.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999998754
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.98 E-value=0.017 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998653
No 481
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.93 E-value=0.017 Score=41.07 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 028237 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~~ 29 (211)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.90 E-value=0.02 Score=40.35 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~~ 30 (211)
.-|++.|++|+||||+...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998753
No 483
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.87 E-value=0.016 Score=45.86 Aligned_cols=21 Identities=33% Similarity=0.287 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 478999999999999999864
No 484
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.87 E-value=0.016 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988754
No 485
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.87 E-value=0.016 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
...+++.|++|+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 486
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.85 E-value=0.015 Score=46.71 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-++|+|++|+|||||++.|..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999998753
No 487
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.83 E-value=0.01 Score=51.01 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 028237 8 KYIIIGDTGVGKSCLLLQF 26 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l 26 (211)
.++|+|++|||||||++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4799999999999999754
No 488
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.016 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
-.|+|.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999864
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.81 E-value=0.022 Score=42.98 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
....++|.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999998764
No 490
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.80 E-value=0.017 Score=45.27 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028237 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~ 27 (211)
.+|+|++|+|||||+..+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3699999999999999864
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.80 E-value=0.019 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
.-|+|+|++|||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999999754
No 492
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.75 E-value=0.018 Score=42.05 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhh
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~ 28 (211)
.-|+|.|.+||||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999854
No 493
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.75 E-value=0.02 Score=44.89 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
-|+|+|+.|||||||...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 494
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.73 E-value=0.018 Score=46.75 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 028237 9 YIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 9 i~v~G~~~~GKStli~~l~~ 28 (211)
++|+|++|+|||||++.+.+
T Consensus 29 ~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999865
No 495
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.018 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
--|++.|+||+|||+|++.+.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999754
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.67 E-value=0.014 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhh
Q 028237 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~ 28 (211)
-.+|+|++|+|||||+..+..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999874
No 497
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.02 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~v~G~~~~GKStli~~l~~~ 29 (211)
+-.|++.|+||+|||.|++.+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 447999999999999999999864
No 498
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.65 E-value=0.021 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhhC
Q 028237 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~v~G~~~~GKStli~~l~~~ 29 (211)
..|+|.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999754
No 499
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.63 E-value=0.0062 Score=49.03 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028237 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~ 27 (211)
.++|+|++|||||||++.+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998874
No 500
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.02 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhhC
Q 028237 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~v~G~~~~GKStli~~l~~~ 29 (211)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998654
Done!