Query 028238
Match_columns 211
No_of_seqs 119 out of 275
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00452 STI Soybean trypsin 100.0 8.5E-59 1.9E-63 383.4 20.4 169 26-204 1-172 (172)
2 cd00178 STI Soybean trypsin in 100.0 1.4E-58 3.1E-63 382.0 19.8 167 26-202 2-172 (172)
3 PF00197 Kunitz_legume: Trypsi 100.0 2.9E-58 6.3E-63 381.3 19.9 170 26-202 2-176 (176)
4 PF07951 Toxin_R_bind_C: Clost 91.5 1.5 3.3E-05 37.6 8.7 142 26-179 10-170 (214)
5 KOG3858 Ephrin, ligand for Eph 58.8 9.2 0.0002 33.4 2.8 53 30-82 117-177 (233)
6 PF05474 Semenogelin: Semenoge 50.4 8.2 0.00018 37.2 1.3 15 1-15 1-15 (582)
7 PF14009 DUF4228: Domain of un 48.7 11 0.00024 29.8 1.7 19 29-47 64-82 (181)
8 PF10657 RC-P840_PscD: Photosy 46.6 19 0.00042 28.6 2.6 27 30-56 24-54 (144)
9 PF08194 DIM: DIM protein; In 41.9 47 0.001 20.7 3.3 16 1-17 1-16 (36)
10 PF08772 NOB1_Zn_bind: Nin one 34.9 20 0.00043 25.7 1.0 40 142-191 15-54 (73)
11 PF02402 Lysis_col: Lysis prot 34.8 56 0.0012 21.3 2.9 13 26-38 24-36 (46)
12 PF12702 Lipocalin_3: Lipocali 34.0 19 0.00042 26.9 0.8 38 108-151 41-78 (93)
13 COG5510 Predicted small secret 33.9 31 0.00068 22.4 1.7 16 1-16 2-17 (44)
14 PF03831 PhnA: PhnA protein; 32.7 20 0.00044 24.5 0.7 18 26-43 2-19 (56)
15 PF00879 Defensin_propep: Defe 32.3 36 0.00078 22.9 1.8 19 1-20 1-19 (52)
16 PF09466 Yqai: Hypothetical pr 26.1 52 0.0011 23.6 1.9 19 26-44 26-44 (71)
17 PF07172 GRP: Glycine rich pro 26.0 45 0.00098 25.0 1.6 10 27-36 33-42 (95)
18 COG5341 Uncharacterized protei 26.0 3.4E+02 0.0074 21.6 7.5 11 36-46 46-56 (132)
19 PF12984 DUF3868: Domain of un 25.1 1.3E+02 0.0028 23.1 4.1 25 26-50 49-73 (115)
20 PRK10449 heat-inducible protei 24.8 77 0.0017 25.0 2.9 17 186-204 121-137 (140)
21 PRK01904 hypothetical protein; 24.1 83 0.0018 26.9 3.1 11 26-36 32-42 (219)
22 TIGR02652 conserved hypothetic 22.1 56 0.0012 26.6 1.6 13 72-84 121-133 (163)
23 PF11153 DUF2931: Protein of u 21.9 63 0.0014 27.2 1.9 19 1-19 1-19 (216)
24 PF02950 Conotoxin: Conotoxin; 20.6 33 0.00072 23.7 0.0 9 1-9 1-9 (75)
25 PF00812 Ephrin: Ephrin; Inte 20.5 74 0.0016 25.7 2.0 20 30-49 101-120 (145)
26 PF10726 DUF2518: Protein of f 20.3 92 0.002 25.3 2.5 22 13-34 53-83 (145)
27 PRK03641 hypothetical protein; 20.3 77 0.0017 27.1 2.2 11 26-36 31-41 (220)
No 1
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=100.00 E-value=8.5e-59 Score=383.35 Aligned_cols=169 Identities=33% Similarity=0.600 Sum_probs=152.3
Q ss_pred EEcCCCCcccCCCcEEEEeecCCC--CeEEecCCCCCCCcceEeccCCCCCCcceEEEecC-CCceeeecccEEEEeccc
Q 028238 26 LHDINGDDVRADQEYYVLESGNGR--GLTTLRHRGDSCPLDVAQVTSAPRTGKPLKFKAYN-SSRFIYEAVDLNVKFSIV 102 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~Pa~~g~--Gl~l~~t~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~-~~~~I~e~t~lnI~F~~~ 102 (211)
|+|+|||||++|++|||+|++||. ||++++++|++||++|+|++++..+|+||+|+|++ ++.+|+|+++|||+|...
T Consensus 1 VlDt~G~~l~~G~~YyI~p~~~g~GGGl~l~~~~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~~~~~ii~e~t~lnI~F~~~ 80 (172)
T smart00452 1 VLDTDGNPLRNGGTYYILPAIRGHGGGLTLAATGNEICPLTVVQSPNEVDNGLPVKFSPPNPSDFIIRESTDLNIEFDAP 80 (172)
T ss_pred CCCCCCCCCcCCCcEEEEEccccCCCCEEEccCCCCCCCCeeEECCCCCCCceeEEEeecCCCCCEEecCceEEEEeCCC
Confidence 799999999999999999999854 39999999999999999999999999999999987 788999999999999998
Q ss_pred CCCCCCCeeEEeccCCCCceEEEEeCCCCCCCCCCCcCCcEEEEEeCCCCCCccEEEecCCCCcccccCceeeeEEEcCC
Q 028238 103 DSCSDSLVWKVDNYDEERGKWFITTGGNEGDPGAKTLLNWFKFERIGTSDPATYRIVYCPSVCASCLFLCQNVGVSFEDS 182 (211)
Q Consensus 103 ~~C~~st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~~~~~YKLvfCp~~~~~c~~~C~dvGi~~d~~ 182 (211)
+.|++|++|+|++ ++..++|+|+|||. |+.. .|||||||+++. .+.|||+|||++|+ ...|+|||++.|++
T Consensus 81 ~~C~~st~W~V~~-~~~~~~~~V~~gg~---~~~~--~~~FkIek~~~~-~~~YKLv~Cp~~~~--~~~C~~vGi~~d~~ 151 (172)
T smart00452 81 PLCAQSTVWTVDE-DSAPEGLAVKTGGY---PGVR--DSWFKIEKYSGE-SNGYKLVYCPNGSD--DDKCGDVGIFIDPE 151 (172)
T ss_pred CCCCCCCEEEEec-CCccccEEEEeCCc---CCCC--CCeEEEEECCCC-CCCEEEEEcCCCCC--CCccCccCeEECCC
Confidence 9999999999985 66778899999984 3333 699999999874 56799999998764 57899999999989
Q ss_pred CceEEEEcCCCCcEEEEEEECC
Q 028238 183 ARRLVLKADYEPVFPVVIFPAE 204 (211)
Q Consensus 183 g~rrL~l~~~~~p~~V~F~k~~ 204 (211)
|+|||||+++ +||.|+|+|++
T Consensus 152 g~rrL~ls~~-~p~~v~F~k~~ 172 (172)
T smart00452 152 GGRRLVLSNE-NPLVVVFKKAE 172 (172)
T ss_pred CcEEEEEcCC-CCeEEEEEECC
Confidence 9999999974 59999999985
No 2
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=100.00 E-value=1.4e-58 Score=382.03 Aligned_cols=167 Identities=36% Similarity=0.653 Sum_probs=152.9
Q ss_pred EEcCCCCcccCCCcEEEEeecCCC--CeEEecCCCCCCCcceEeccCCCCCCcceEEEecC-CCceeeecccEEEEeccc
Q 028238 26 LHDINGDDVRADQEYYVLESGNGR--GLTTLRHRGDSCPLDVAQVTSAPRTGKPLKFKAYN-SSRFIYEAVDLNVKFSIV 102 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~Pa~~g~--Gl~l~~t~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~-~~~~I~e~t~lnI~F~~~ 102 (211)
|||+|||||++|++|||+|++||+ ||++++++|++||++|+|++++..+|+||+|+|++ ++.+|+|+++|||+|...
T Consensus 2 VlD~~G~~l~~g~~YyI~p~~~g~GGGl~l~~~~~~~CPl~VvQ~~~~~~~GlPv~Fs~~~~~~~~I~e~t~lnI~F~~~ 81 (172)
T cd00178 2 VLDTDGNPLRNGGRYYILPAIRGGGGGLTLAATGNETCPLTVVQSPSELDRGLPVKFSPPNPKSDVIRESTDLNIEFDAP 81 (172)
T ss_pred cCcCCCCCCcCCCeEEEEEceeCCCCcEEEcCCCCCCCCCeeEECCCCCCCCeeEEEEeCCCCCCEEECCCcEEEEeCCC
Confidence 899999999999999999999953 39999999999999999999999999999999988 899999999999999998
Q ss_pred CCC-CCCCeeEEeccCCCCceEEEEeCCCCCCCCCCCcCCcEEEEEeCCCCCCccEEEecCCCCcccccCceeeeEEEcC
Q 028238 103 DSC-SDSLVWKVDNYDEERGKWFITTGGNEGDPGAKTLLNWFKFERIGTSDPATYRIVYCPSVCASCLFLCQNVGVSFED 181 (211)
Q Consensus 103 ~~C-~~st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~~~~~YKLvfCp~~~~~c~~~C~dvGi~~d~ 181 (211)
+.| ++|++|+|++++. .++|+|+|||.+++ +..|||||||+++. .+.|||+|||++| ...|+|||++.|+
T Consensus 82 ~~c~~~st~W~V~~~~~-~~~~~V~~Gg~~~~----~~~~~FkIek~~~~-~~~YKL~~Cp~~~---~~~C~~VGi~~d~ 152 (172)
T cd00178 82 TWCCGSSTVWKVDRDST-PEGLFVTTGGVKGN----TLNSWFKIEKVSEG-LNAYKLVFCPSSC---DSKCGDVGIFIDP 152 (172)
T ss_pred CcCCCCCCEEEEeccCC-ccCeEEEeCCcCCC----cccceEEEEECCCC-CCcEEEEEcCCCC---CCceeecccEECC
Confidence 777 9999999997655 78899999999875 67899999999874 5679999999875 5799999999998
Q ss_pred CCceEEEEcCCCCcEEEEEEE
Q 028238 182 SARRLVLKADYEPVFPVVIFP 202 (211)
Q Consensus 182 ~g~rrL~l~~~~~p~~V~F~k 202 (211)
+|.|||||+++ +||.|+|+|
T Consensus 153 ~g~rrL~l~~~-~p~~V~F~k 172 (172)
T cd00178 153 EGVRRLVLSDD-NPLVVVFKK 172 (172)
T ss_pred CCcEEEEEcCC-CCeEEEEeC
Confidence 99999999985 599999997
No 3
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=100.00 E-value=2.9e-58 Score=381.29 Aligned_cols=170 Identities=40% Similarity=0.713 Sum_probs=152.4
Q ss_pred EEcCCCCcccCCCcEEEEeecCCCC--eEEecCCCCCCCcceEeccCCCCCCcceEEEec--C-CCceeeecccEEEEec
Q 028238 26 LHDINGDDVRADQEYYVLESGNGRG--LTTLRHRGDSCPLDVAQVTSAPRTGKPLKFKAY--N-SSRFIYEAVDLNVKFS 100 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~Pa~~g~G--l~l~~t~n~~CPl~VvQ~~~~~~~GlPV~Fs~~--~-~~~~I~e~t~lnI~F~ 100 (211)
|+|+|||||++|++|||+|++||.| |++++++|++||++|+|++++..+|+||+|+|+ . .+++|||+++|||+|.
T Consensus 2 VlD~~G~~l~~g~~YyI~p~~~~~GGGl~l~~~~n~~CPl~Vvq~~~~~~~GlPv~Fs~~~~~~~~~~ir~st~l~I~F~ 81 (176)
T PF00197_consen 2 VLDTDGNPLRNGGEYYILPAIRGAGGGLTLAKTGNETCPLDVVQSPSELSRGLPVKFSPPYRNSFDTVIRESTDLNIEFS 81 (176)
T ss_dssp -BETTSCB-BTTSEEEEEESSTGCSEEEEEECCTTSSSSEEEEEESSTTS-BSEEEEEESSSSSSTBCTBTTSEEEEEES
T ss_pred cCCCCCCCCcCCCCEEEEeCccCCCCeeEecCCCCCCCChheEEccCCCCCceeEEEEeCCcccCCCeeEcceEEEEEEc
Confidence 8999999999999999999999774 999999999999999999999999999999994 3 7789999999999999
Q ss_pred ccCCCCCCCeeEEeccCCCCceEEEEeCCCCCCCCCCCcCCcEEEEEeCCCCCCccEEEecCCCCcccccCceeeeEEEc
Q 028238 101 IVDSCSDSLVWKVDNYDEERGKWFITTGGNEGDPGAKTLLNWFKFERIGTSDPATYRIVYCPSVCASCLFLCQNVGVSFE 180 (211)
Q Consensus 101 ~~~~C~~st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~~~~~YKLvfCp~~~~~c~~~C~dvGi~~d 180 (211)
.++.|..+++|+|++.++++++ +|+|||.+| .++..|||||||++.+..+.|||+|||..|+ ...|+||||++|
T Consensus 82 ~~~~c~~~~~W~V~~~~~~~~~-~V~~gg~~~---~~~~~~~FkIek~~~~~~~~YKLvfCp~~~~--~~~C~dvGi~~d 155 (176)
T PF00197_consen 82 SPTSCACSTVWKVVKDDPETGQ-FVKTGGVKG---PETVDSWFKIEKYEDGFNNAYKLVFCPSVCC--DSLCGDVGIYFD 155 (176)
T ss_dssp SECTTSSSSBEEEEEETTTTEE-EEEEESSSS---SGCGCCEEEEEEESSSSTTEEEEEEESSSSS--TSSEEEEEEEEE
T ss_pred cCCCCCccCEEEEeecCcccce-EEEeCCccc---CCccCcEEEEEEeCCCCCCcEEEEECCCccc--cCccceeeEEEc
Confidence 9999999999999987776565 899999987 6788999999999873368999999998764 789999999999
Q ss_pred CCCceEEEEcCCCCcEEEEEEE
Q 028238 181 DSARRLVLKADYEPVFPVVIFP 202 (211)
Q Consensus 181 ~~g~rrL~l~~~~~p~~V~F~k 202 (211)
++|+|||||+++ +||.|+|||
T Consensus 156 ~~g~rrL~l~~~-~p~~V~F~K 176 (176)
T PF00197_consen 156 DNGNRRLALSDD-NPFVVVFQK 176 (176)
T ss_dssp TTSEEEEEEESS-SB-EEEEEE
T ss_pred CCCeEEEEECCC-CcEEEEEEC
Confidence 999999999986 699999998
No 4
>PF07951 Toxin_R_bind_C: Clostridium neurotoxin, C-terminal receptor binding; InterPro: IPR013104 The Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domains and two receptor-binding domains []. This domain is the C-terminal receptor-binding domain, which adopts a modified beta-trefoil fold with a six stranded beta-barrel and a beta-hairpin triplet capping the domain []. The first step in the intoxication process is a binding event between this domain and the pre-synaptic nerve ending []. ; PDB: 3AZW_A 3N7L_A 3AZV_A 3N7M_A 3RSJ_B 3FUQ_A 3RMX_D 3OBT_A 3RMY_B 3OGG_A ....
Probab=91.47 E-value=1.5 Score=37.58 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=80.4
Q ss_pred EEcCCCCcccCCCcEEEEeecCCCC-eEEe--------cCCCCCCCcceEeccCCCCCCcceEEEecC----CCceeeec
Q 028238 26 LHDINGDDVRADQEYYVLESGNGRG-LTTL--------RHRGDSCPLDVAQVTSAPRTGKPLKFKAYN----SSRFIYEA 92 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~Pa~~g~G-l~l~--------~t~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~----~~~~I~e~ 92 (211)
+.|==||+|+-..+||++++..-.- +++- .++.. =-+.+.-...++-.|++|++.... .+..||.+
T Consensus 10 LKDfWGN~L~YdkeYYl~N~~~~n~yi~~~~~~~~~~n~~r~~-~~~ni~~n~r~LY~G~k~iIkr~~~~~~~Dn~Vr~~ 88 (214)
T PF07951_consen 10 LKDFWGNYLRYDKEYYLLNVLYPNKYIKRKSDSILSINNQRGT-GVFNIYLNYRDLYTGIKFIIKRYADNSNNDNRVRNG 88 (214)
T ss_dssp -BBTTSSB-BTTSEEEEEESSSTTEEEEEETTSEEEEEEEEEE-EEEEEESEETSSSSS-EEEEEESSTSSSTSSB-BTT
T ss_pred HHHhcCCccccCceeEEEecCCcccceeecccceeeecccccc-cceeeeeeehhhccCceEEEEEccCCCCCcceeecC
Confidence 8899999999999999999875332 3222 11110 011233334557899999998743 78899999
Q ss_pred ccEEEEecccCCCCCCCeeEEec---c--CCCCceEEEEeCCCCCCCCCCCcCCcEEEEEeCCCCCCcc-EEEecCCCCc
Q 028238 93 VDLNVKFSIVDSCSDSLVWKVDN---Y--DEERGKWFITTGGNEGDPGAKTLLNWFKFERIGTSDPATY-RIVYCPSVCA 166 (211)
Q Consensus 93 t~lnI~F~~~~~C~~st~W~v~~---~--d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~~~~~Y-KLvfCp~~~~ 166 (211)
..+.|.|... ...|.|-- + +.+..+-.+.+.+....-+.-..-..|+|++..+. ..| ...||..-
T Consensus 89 D~iy~n~~~~-----n~ey~l~~~~~Y~~~~~~~~kli~l~~l~~~~~~~~~~~vmqik~~~~~--~~yc~q~f~~n~-- 159 (214)
T PF07951_consen 89 DYIYFNVVIN-----NKEYRLYADTMYKNSKNQSEKLIYLLRLSDSNDNINQYIVMQIKNYNSQ--GTYCSQIFKSNN-- 159 (214)
T ss_dssp EEEEEEEEET-----TEEEEEEEETEECTTSSSSEEEEEEEEEECSCTTTCEECEEEEEEEEES--TSSEEEEEEEST--
T ss_pred CEEEEEEEeC-----CceEEEEeeeecccccccchheeeEEecccCCCCcCceEEEEEEecccc--cchhhhhhhhcC--
Confidence 9999999764 56888811 1 22223344533332211111112358999998653 124 66676542
Q ss_pred ccccCceeeeEEE
Q 028238 167 SCLFLCQNVGVSF 179 (211)
Q Consensus 167 ~c~~~C~dvGi~~ 179 (211)
...=+=||+|.
T Consensus 160 --~n~iGLiG~h~ 170 (214)
T PF07951_consen 160 --TNTIGLIGFHR 170 (214)
T ss_dssp --SCEEEEEEEEE
T ss_pred --CCcEEEEEEec
Confidence 12223377776
No 5
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=58.78 E-value=9.2 Score=33.40 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=34.5
Q ss_pred CCCcccCCCcEEEEeecCCC--Ce-----EEecCCCCCCCcceEeccCC-CCCCcceEEEe
Q 028238 30 NGDDVRADQEYYVLESGNGR--GL-----TTLRHRGDSCPLDVAQVTSA-PRTGKPLKFKA 82 (211)
Q Consensus 30 ~G~~l~~g~~YyI~Pa~~g~--Gl-----~l~~t~n~~CPl~VvQ~~~~-~~~GlPV~Fs~ 82 (211)
.|-+-++|.+||+++...|. |+ .+-.+.+..+-..|.|++.. ...=.++.+.|
T Consensus 117 ~G~EF~pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~~~~~~~~~~~~~p 177 (233)
T KOG3858|consen 117 LGFEFQPGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPRSGVTPEKPVSEEP 177 (233)
T ss_pred CCccccCCCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCCCCccccccccccc
Confidence 69999999999999987644 42 23334566777788887543 11223444444
No 6
>PF05474 Semenogelin: Semenogelin; InterPro: IPR008836 This family consists of several mammalian semenogelin (I and II) proteins. Freshly ejaculated Homo sapiens semen has the appearance of a loose gel in which the predominant structural protein components are the seminal vesicle secreted semenogelins (Sg) [].; GO: 0005198 structural molecule activity, 0019953 sexual reproduction, 0005576 extracellular region, 0030141 stored secretory granule
Probab=50.43 E-value=8.2 Score=37.17 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHH
Q 028238 1 MKTPFVMAISFLLLA 15 (211)
Q Consensus 1 MK~~~l~~lsfLl~a 15 (211)
||++++++||+||++
T Consensus 1 MK~~I~F~lSLLLiL 15 (582)
T PF05474_consen 1 MKSIIFFVLSLLLIL 15 (582)
T ss_pred CCceeehHHHHHHHH
Confidence 999888888877765
No 7
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=48.66 E-value=11 Score=29.80 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=16.5
Q ss_pred CCCCcccCCCcEEEEeecC
Q 028238 29 INGDDVRADQEYYVLESGN 47 (211)
Q Consensus 29 ~~G~~l~~g~~YyI~Pa~~ 47 (211)
.-.++|++|.-||++|..+
T Consensus 64 ~~d~~L~~G~~Y~llP~~~ 82 (181)
T PF14009_consen 64 PPDEELQPGQIYFLLPMSR 82 (181)
T ss_pred CccCeecCCCEEEEEEccc
Confidence 4568899999999999875
No 8
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=46.60 E-value=19 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=22.3
Q ss_pred CCCcccCCCcEEEEeecCCC-C---eEEecC
Q 028238 30 NGDDVRADQEYYVLESGNGR-G---LTTLRH 56 (211)
Q Consensus 30 ~G~~l~~g~~YyI~Pa~~g~-G---l~l~~t 56 (211)
.||++--..+|||-.|.|+. | |++.++
T Consensus 24 sGNa~HK~eKYfITsAkRD~~g~Lql~i~pa 54 (144)
T PF10657_consen 24 SGNAVHKAEKYFITSAKRDRYGKLQLTISPA 54 (144)
T ss_pred cCchhhhhheeEEeeeecccCCceEEEEecC
Confidence 79999999999999999976 6 555544
No 9
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=41.87 E-value=47 Score=20.71 Aligned_cols=16 Identities=50% Similarity=0.605 Sum_probs=9.1
Q ss_pred CCchhHHHHHHHHHHHh
Q 028238 1 MKTPFVMAISFLLLAFA 17 (211)
Q Consensus 1 MK~~~l~~lsfLl~a~~ 17 (211)
||...+ ++.|+|+|++
T Consensus 1 Mk~l~~-a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSL-AFALLLLALA 16 (36)
T ss_pred CceeHH-HHHHHHHHHH
Confidence 898766 3334555543
No 10
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=34.86 E-value=20 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=11.7
Q ss_pred cEEEEEeCCCCCCccEEEecCCCCcccccCceeeeEEEcCCCceEEEEcC
Q 028238 142 WFKFERIGTSDPATYRIVYCPSVCASCLFLCQNVGVSFEDSARRLVLKAD 191 (211)
Q Consensus 142 ~FkIek~~~~~~~~YKLvfCp~~~~~c~~~C~dvGi~~d~~g~rrL~l~~ 191 (211)
=|+|.+. -..+|||. |. ...=.-|-+++|++|...+.+..
T Consensus 15 Cf~~t~~-------~~k~FCp~-CG--n~TL~rvsvsv~~~G~~~~~~~~ 54 (73)
T PF08772_consen 15 CFKITKD-------MTKQFCPK-CG--NATLKRVSVSVDEDGKIKLHLKK 54 (73)
T ss_dssp S--EES--------SS--S-SS-S----S--EEEE-B--SS---B-----
T ss_pred cccCcCC-------CCceeCcc-cC--CCcceEEEEEECCCCCEEEEecC
Confidence 4666664 33589995 22 12234577777888877777764
No 11
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=34.82 E-value=56 Score=21.33 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=10.6
Q ss_pred EEcCCCCcccCCC
Q 028238 26 LHDINGDDVRADQ 38 (211)
Q Consensus 26 VlD~~G~~l~~g~ 38 (211)
|.|+.|-.|-|..
T Consensus 24 iRDvqGGtVaPSS 36 (46)
T PF02402_consen 24 IRDVQGGTVAPSS 36 (46)
T ss_pred eecCCCceECCCc
Confidence 9999998887654
No 12
>PF12702 Lipocalin_3: Lipocalin-like; InterPro: IPR024311 This is a family of proteins of 115 residues on average. There are 16 subunits in each asymmetric unit cell. The interface interaction indicates that the biomolecule of protein Q8A9E6 from SWISSPROT should be a monomer. The family has two highly conserved tryptophan residues. The fold is very similar to the lipocalin-like fold from several comparable structures.; PDB: 3HTY_I.
Probab=34.05 E-value=19 Score=26.89 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=25.2
Q ss_pred CCeeEEeccCCCCceEEEEeCCCCCCCCCCCcCCcEEEEEeCCC
Q 028238 108 SLVWKVDNYDEERGKWFITTGGNEGDPGAKTLLNWFKFERIGTS 151 (211)
Q Consensus 108 st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~ 151 (211)
...|++. + ...+..|-.+|+.+.......|+|++...+
T Consensus 41 y~~Wk~~--g----~~Lil~g~s~Gn~~~~~~~~t~~I~~lt~d 78 (93)
T PF12702_consen 41 YEKWKLE--G----NKLILEGESIGNGQSSEFTDTFDIEKLTSD 78 (93)
T ss_dssp EEEEEEE--T----TEEEEEEEEEETTEEEEEEEEEEEEEE-SS
T ss_pred eeeEEEc--C----CEEEEEEEEccCCccEEEEEEEEEEEeCCC
Confidence 3579965 2 235777777777554456678999998754
No 13
>COG5510 Predicted small secreted protein [Function unknown]
Probab=33.91 E-value=31 Score=22.39 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=8.5
Q ss_pred CCchhHHHHHHHHHHH
Q 028238 1 MKTPFVMAISFLLLAF 16 (211)
Q Consensus 1 MK~~~l~~lsfLl~a~ 16 (211)
||.+.++.++++|.++
T Consensus 2 mk~t~l~i~~vll~s~ 17 (44)
T COG5510 2 MKKTILLIALVLLAST 17 (44)
T ss_pred chHHHHHHHHHHHHHH
Confidence 7766554444455443
No 14
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=32.71 E-value=20 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=10.3
Q ss_pred EEcCCCCcccCCCcEEEE
Q 028238 26 LHDINGDDVRADQEYYVL 43 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~ 43 (211)
|.|.+|++|+.|-+--++
T Consensus 2 v~DsnGn~L~dGDsV~~i 19 (56)
T PF03831_consen 2 VKDSNGNELQDGDSVTLI 19 (56)
T ss_dssp -B-TTS-B--TTEEEEES
T ss_pred eEcCCCCCccCCCEEEEE
Confidence 689999999999876554
No 15
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=32.34 E-value=36 Score=22.93 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHHhhCC
Q 028238 1 MKTPFVMAISFLLLAFAAKP 20 (211)
Q Consensus 1 MK~~~l~~lsfLl~a~~t~~ 20 (211)
||+..||+- +||+||-+..
T Consensus 1 MRTL~LLaA-lLLlAlqaQA 19 (52)
T PF00879_consen 1 MRTLALLAA-LLLLALQAQA 19 (52)
T ss_pred CcHHHHHHH-HHHHHHHHhc
Confidence 888777654 6788876553
No 16
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=26.07 E-value=52 Score=23.56 Aligned_cols=19 Identities=21% Similarity=0.681 Sum_probs=11.5
Q ss_pred EEcCCCCcccCCCcEEEEe
Q 028238 26 LHDINGDDVRADQEYYVLE 44 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~P 44 (211)
+.|.-|+++.+|.+|+|.|
T Consensus 26 i~D~yG~EI~~~D~y~i~~ 44 (71)
T PF09466_consen 26 IEDFYGDEIFPGDDYFISP 44 (71)
T ss_dssp ---TTSS-B-TTS-EEE-E
T ss_pred eeeeeccccccCCeEEEeC
Confidence 7899999999999999976
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.01 E-value=45 Score=24.98 Aligned_cols=10 Identities=10% Similarity=0.342 Sum_probs=4.3
Q ss_pred EcCCCCcccC
Q 028238 27 HDINGDDVRA 36 (211)
Q Consensus 27 lD~~G~~l~~ 36 (211)
...+-++|+.
T Consensus 33 ~~~~~~~v~~ 42 (95)
T PF07172_consen 33 KEEEENEVQD 42 (95)
T ss_pred ccccCCCCCc
Confidence 3344444443
No 18
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.97 E-value=3.4e+02 Score=21.61 Aligned_cols=11 Identities=0% Similarity=-0.118 Sum_probs=7.2
Q ss_pred CCCcEEEEeec
Q 028238 36 ADQEYYVLESG 46 (211)
Q Consensus 36 ~g~~YyI~Pa~ 46 (211)
.|..||-.|..
T Consensus 46 ~Gk~~r~i~l~ 56 (132)
T COG5341 46 DGKVIRTIPLT 56 (132)
T ss_pred CCEEEEEEEcc
Confidence 45667777765
No 19
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=25.14 E-value=1.3e+02 Score=23.09 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=17.8
Q ss_pred EEcCCCCcccCCCcEEEEeecCCCC
Q 028238 26 LHDINGDDVRADQEYYVLESGNGRG 50 (211)
Q Consensus 26 VlD~~G~~l~~g~~YyI~Pa~~g~G 50 (211)
-+|.++-.|.+.....+.|+..+++
T Consensus 49 ~idl~~l~v~s~~~l~ltPvL~s~~ 73 (115)
T PF12984_consen 49 DIDLSGLKVKSNRSLILTPVLVSGE 73 (115)
T ss_pred EEEecccccCCCCEEEEEeEEEcCC
Confidence 4577777777777788888766543
No 20
>PRK10449 heat-inducible protein; Provisional
Probab=24.76 E-value=77 Score=25.02 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=10.7
Q ss_pred EEEEcCCCCcEEEEEEECC
Q 028238 186 LVLKADYEPVFPVVIFPAE 204 (211)
Q Consensus 186 rL~l~~~~~p~~V~F~k~~ 204 (211)
.|.|++. -..++|+..|
T Consensus 121 ~L~L~~~--~~~l~f~~~~ 137 (140)
T PRK10449 121 QLTLATA--KQTLMYKLAD 137 (140)
T ss_pred EEEEEcC--CcEEEEEEhh
Confidence 5777764 4567776654
No 21
>PRK01904 hypothetical protein; Provisional
Probab=24.08 E-value=83 Score=26.86 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=8.8
Q ss_pred EEcCCCCcccC
Q 028238 26 LHDINGDDVRA 36 (211)
Q Consensus 26 VlD~~G~~l~~ 36 (211)
+|=.||+++..
T Consensus 32 lL~vnG~kv~~ 42 (219)
T PRK01904 32 FLAIDGQKASK 42 (219)
T ss_pred EEEECCEECcc
Confidence 88888998864
No 22
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.07 E-value=56 Score=26.61 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=9.3
Q ss_pred CCCCcceEEEecC
Q 028238 72 PRTGKPLKFKAYN 84 (211)
Q Consensus 72 ~~~GlPV~Fs~~~ 84 (211)
.--||||.|+|..
T Consensus 121 rLYGLPveFsp~~ 133 (163)
T TIGR02652 121 RLYGLPVEFSPAA 133 (163)
T ss_pred cccccceeccCCC
Confidence 3468888888753
No 23
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=21.86 E-value=63 Score=27.19 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHHHHhhC
Q 028238 1 MKTPFVMAISFLLLAFAAK 19 (211)
Q Consensus 1 MK~~~l~~lsfLl~a~~t~ 19 (211)
||.+++++|++||.+-++.
T Consensus 1 mk~i~~l~l~lll~~C~~~ 19 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTN 19 (216)
T ss_pred ChHHHHHHHHHHHHhhcCC
Confidence 8988776665555554443
No 24
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=20.61 E-value=33 Score=23.70 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCchhHHHH
Q 028238 1 MKTPFVMAI 9 (211)
Q Consensus 1 MK~~~l~~l 9 (211)
||.+.+|.+
T Consensus 1 mKLt~vliV 9 (75)
T PF02950_consen 1 MKLTCVLIV 9 (75)
T ss_dssp ---------
T ss_pred CCcchHHHH
Confidence 898865443
No 25
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=20.45 E-value=74 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=15.4
Q ss_pred CCCcccCCCcEEEEeecCCC
Q 028238 30 NGDDVRADQEYYVLESGNGR 49 (211)
Q Consensus 30 ~G~~l~~g~~YyI~Pa~~g~ 49 (211)
.|-+-++|.+||++....|.
T Consensus 101 ~G~EF~pG~~YY~ISts~g~ 120 (145)
T PF00812_consen 101 LGLEFQPGHDYYYISTSTGT 120 (145)
T ss_dssp TSSS--TTEEEEEEEEESSS
T ss_pred CCeeecCCCeEEEEEccCCC
Confidence 68899999999999987654
No 26
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=20.30 E-value=92 Score=25.32 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=13.8
Q ss_pred HHHHhhCCCCCc-----E----EEcCCCCcc
Q 028238 13 LLAFAAKPLVGS-----R----LHDINGDDV 34 (211)
Q Consensus 13 l~a~~t~~l~~~-----~----VlD~~G~~l 34 (211)
+|||+..+++.. . |+|--+|.+
T Consensus 53 ~fal~~~~~~r~~IpGA~~~~~VyDnG~~~v 83 (145)
T PF10726_consen 53 CFALSLSYFPRVVIPGAVRYPIVYDNGADQV 83 (145)
T ss_pred HHHheeccCCCccccCceEeeEEEECCCcEE
Confidence 677777776542 1 777666654
No 27
>PRK03641 hypothetical protein; Provisional
Probab=20.26 E-value=77 Score=27.06 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.1
Q ss_pred EEcCCCCcccC
Q 028238 26 LHDINGDDVRA 36 (211)
Q Consensus 26 VlD~~G~~l~~ 36 (211)
+|=.||.++..
T Consensus 31 lL~vnG~kv~~ 41 (220)
T PRK03641 31 LLVLDGKKVSG 41 (220)
T ss_pred EEEECCEEccc
Confidence 88889998765
Done!