BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028239
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/211 (91%), Positives = 200/211 (94%), Gaps = 3/211 (1%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
MS SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
DLR+D+GYLADH +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 124 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
PRRKE+ R+K HRRS CSIA SIVCGGC A
Sbjct: 182 PRRKEVPRRRKNHRRSGCSIA-SIVCGGCTA 211
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 314 bits (804), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 146/180 (81%), Positives = 162/180 (90%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
DLR+D+ + DH G+ ITT QGEEL+K IG+ YIECSSKTQQNVKAVFD AIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 312 bits (800), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 143/180 (79%), Positives = 162/180 (90%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
MS ++FIKCVTVGDGAVGKTCMLI YT N FPTDY+PTVFDNFSANV VDGS VNLGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYEN+ KKW+PEL+ +AP +PIVLVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
DLR+D+ +L DH G+ ITTAQGEELRK IGA Y+ECSSKTQQNVKAVFDTAI+V L+P
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 142/180 (78%), Positives = 162/180 (90%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G+ VNLGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPIVLVGTKL
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
DLR+D+ + DH G+ ITT QGEEL+K IGA AYIECSSK+Q+NVK VFD AI+VVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 234 bits (596), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/191 (60%), Positives = 138/191 (72%), Gaps = 8/191 (4%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
KKR R+
Sbjct: 181 ---PVKKRKRK 188
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 233 bits (594), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP K
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 185 E 185
+
Sbjct: 184 K 184
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 8/191 (4%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
KKR R+
Sbjct: 181 ---PVKKRKRK 188
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 8/191 (4%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
KKR R+
Sbjct: 181 ---PVKKRKRK 188
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 8/191 (4%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+ ++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
KKR R+
Sbjct: 181 ---PVKKRKRK 188
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 230 bits (586), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+ ++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP K
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 187
Query: 185 E 185
+
Sbjct: 188 K 188
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 230 bits (586), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+ ++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP K
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 185 E 185
+
Sbjct: 184 K 184
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 229 bits (585), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+ ++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL PP K
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 185
Query: 185 E 185
+
Sbjct: 186 K 186
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 229 bits (584), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 134/182 (73%), Gaps = 2/182 (1%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
+A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AG EDY RLRPLSY D+F++ FSL+S AS+ +V KW PE+R PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
LR+D+ + + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
Query: 180 PP 181
PP
Sbjct: 331 PP 332
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 229 bits (584), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 134/182 (73%), Gaps = 2/182 (1%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
+A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AG EDY RLRPLSY D+F++ FSL+S AS+ +V KW PE+R PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
LR+D+ + + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
Query: 180 PP 181
PP
Sbjct: 331 PP 332
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 132/175 (75%), Gaps = 2/175 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 134/182 (73%), Gaps = 2/182 (1%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
+A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AG EDY RLRPLSY D+F++ FSL+S AS+ +V KW PE+R PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
LR+D+ + + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
Query: 180 PP 181
PP
Sbjct: 331 PP 332
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 228 bits (582), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 228 bits (582), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/196 (56%), Positives = 138/196 (70%), Gaps = 10/196 (5%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VD VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S ASYENV KW PE+R P+ PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + IT QG L K+I + Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP---- 179
Query: 185 EMMARKKRHRRSSCSI 200
+ R ++ +CS+
Sbjct: 180 ----QPTRQQKRACSL 191
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/179 (60%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
S + IKCV VGDGAVGK C+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDT
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQEDY RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLD
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D+ + + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 226 bits (577), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 108/173 (62%), Positives = 130/173 (75%), Gaps = 2/173 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 226 bits (575), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N P +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N F +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R PN PI+LVGTKLDLR+D+
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 136/196 (69%), Gaps = 21/196 (10%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67 YSRLRPLSY--------------RG-----ADIFVLAFSLISRASYENVLKKWMPELRRF 107
Y RLRPLSY RG AD+F++ FSL+S AS+ENV KW PE+R
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APNVPIVLVGTKLDLREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQN 165
PN PI+LVGTKLDLR+D+ + + IT QG + K+IGA Y+ECS+ TQ+
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 166 VKAVFDTAIKVVLQPP 181
+K VFD AI+ VL PP
Sbjct: 186 LKTVFDEAIRAVLCPP 201
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R P+ PI+LVGTKLDLR+D+
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + ++IG+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R P+ PI+LVGTKLDLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + ++IG+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S AS+ENV KW PE+R P+ PI+LVGTKLDLR+D+
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG + ++IG+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/180 (60%), Positives = 131/180 (72%), Gaps = 2/180 (1%)
Query: 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
S+ IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV VD VNLGLWDTA
Sbjct: 6 GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
GQEDY RLRPLSY D+F++ FSL+S ASYENV KW PE+R P+ PI+LVGTKLDL
Sbjct: 66 GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
Query: 123 REDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
R+D+ + + IT QG L K+I + Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV VD VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FSL+S ASYENV KW PE+R P+ PI+LVGTKLDLR+D+
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + IT QG L K+I + Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 96/188 (51%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
+SA + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+D
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
TAGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
DLR+D + + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI
Sbjct: 125 DLRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 178 LQPPRRKE 185
L+PP K+
Sbjct: 184 LEPPEPKK 191
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 132/177 (74%), Gaps = 2/177 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65
+KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V V G LGL+DTAGQE
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
DY RLRPLSY D+F++ FS+++ AS++NV ++W+PEL+ +APNVP +L+GT++DLR+D
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 126 RGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
LA + + I QG++L K+IGA Y+ECS+ TQ+ +K VFD AI +L P
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
S + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D + + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 122 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 179 QPPRRKE 185
+PP K+
Sbjct: 181 EPPEPKK 187
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
S + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DT
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++D
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D + + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 121 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 179 QPPRRKE 185
+PP K+
Sbjct: 180 EPPEPKK 186
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
S + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D + + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 122 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 179 QPPRRKE 185
+PP K+
Sbjct: 181 EPPEPKK 187
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 125 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 183
Query: 184 KE 185
K+
Sbjct: 184 KK 185
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
K+
Sbjct: 183 KK 184
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
K+
Sbjct: 183 KK 184
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
K+
Sbjct: 183 KK 184
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
K+
Sbjct: 183 KK 184
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 203 bits (517), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 128/181 (70%), Gaps = 4/181 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 134 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 192
Query: 184 K 184
K
Sbjct: 193 K 193
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 130/187 (69%), Gaps = 4/187 (2%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
S + IKCV VGDGAVGK C+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DT
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D + + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 126 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 179 QPPRRKE 185
+PP K+
Sbjct: 185 EPPEPKK 191
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
K+
Sbjct: 183 KK 184
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGD AVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
K+
Sbjct: 183 KK 184
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 200 bits (509), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+PP
Sbjct: 128 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 186
Query: 184 KE 185
K+
Sbjct: 187 KK 188
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 126/177 (71%), Gaps = 4/177 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+P
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 4/180 (2%)
Query: 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
S+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTA
Sbjct: 4 GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
GQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DL
Sbjct: 64 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 123 REDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R+D + + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 RDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 196 bits (498), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 126 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 196 bits (498), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 124/175 (70%), Gaps = 4/175 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NKFP++Y+P VFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LI YT+NK P++Y+PTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + N IT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 124/175 (70%), Gaps = 2/175 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
+KCV VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V+VDG V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
+ +LRPL Y DIF+L FS++S +S++NV +KW+PE+R P PI+LVGT+ DLRED
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 GYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
L D + + L ++I AA+YIECS+ TQ+N+K VFD AI +Q
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ R K
Sbjct: 129 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 187
Query: 185 E 185
+
Sbjct: 188 K 188
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ R K
Sbjct: 129 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 187
Query: 185 E 185
+
Sbjct: 188 K 188
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ R K
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 185
Query: 185 E 185
+
Sbjct: 186 K 186
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ R K
Sbjct: 130 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 188
Query: 185 E 185
+
Sbjct: 189 K 189
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 129 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 128 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
SA+ K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDT
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQEDY RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K D
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LRED---RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR D R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + L
Sbjct: 125 LRNDEHTRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183
Query: 179 Q 179
Q
Sbjct: 184 Q 184
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 4/181 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ R K
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 185
Query: 185 E 185
+
Sbjct: 186 K 186
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR+D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + + +G ++ +I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 147 TRRELA-KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 4/181 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ R K
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 185
Query: 185 E 185
+
Sbjct: 186 K 186
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 126/196 (64%), Gaps = 13/196 (6%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR+D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R LA + + + +G ++ +I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 127 TRRELA-KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ----- 180
Query: 185 EMMARKKRHRRSSCSI 200
+K RR C I
Sbjct: 181 ----VRKNKRRRGCPI 192
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR+D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + + +G ++ +I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 147 TRRELA-KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 125 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGD A GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 128 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW+PE++ F PNVPI+LV K DLR D
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + T G + +I A Y+ECS+KT++ V+ VF+TA + LQ
Sbjct: 147 VRTELA-RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + L
Sbjct: 125 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGD A GKTC+LI ++ ++FP Y+PTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
R RPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + A+G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ VDG V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R LA + + +G ++ +IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 130 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 112/173 (64%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + +FP Y+PTVF+N+ A+V VDG V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
RLRPLSY +++ ++ FS+ S ENV +KW+ E+ F VPI+LVG K+DLR D
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ G +T+ +G+ + QIGA Y ECS+KT V+ VF+ A + L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
+K V VGDG GKT +L+ + FP Y PTVF+ + N+ V G V+L +WDTAGQ+D
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
Y RLRPL Y A + +L F + S S++N+ +W PE+ F VPI++VG K DLR+D+
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 127 GYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
+ G +T +G+E+ + +GA AY+ECS++ NV AVF A +V L
Sbjct: 155 SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
+ K +K V VGDGAVGKTC+L+ ++ + PT Y+PTVF+NFS + L LWDT
Sbjct: 18 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQE+Y RLRPLSY +D+ +L F++ +R S++N+ KW PE++ + VLVG K+D
Sbjct: 78 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D GS+ +T +G++L +++G AYIE SS + + VF+ ++ +
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
+ K +K V VGDGAVGKTC+L+ ++ + PT Y+PTVF+NFS + L LWDT
Sbjct: 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
AGQE+Y RLRPLSY +D+ +L F++ +R S++N+ KW PE++ + VLVG K+D
Sbjct: 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
LR+D GS+ +T +G++L +++G AYIE SS + + VF+ ++ +
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 1 MSASKFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGL 58
M ++ +KC V VGD GKT +L + + FP +Y+PTVF+N++A+ +D + L L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGT 118
WDT+G Y +RPLSY +D ++ F + + ++VLKKW E++ F PN ++LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSS-KTQQNVKAVFDTA 173
K DLR D L + + ++ QG + KQIGAA YIECS+ +++ +V+ +F A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 1 MSASKFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGL 58
M ++ +KC V VGD GKT +L + + FP +Y+PTVF+N++A+ +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGT 118
WDT+G Y +RPLSY +D ++ F + + ++VLKKW E++ F PN ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSS-KTQQNVKAVFDTA 173
K DLR D L + + ++ QG + KQIGAA YIECS+ +++ +V+ +F A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 3 ASKFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
+++ +KC V VGD GKT +L + + FP +Y+PTVF+N++A+ +D + L LWD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
T+G Y +RPLSY +D ++ F + + ++VLKKW E++ F PN ++LVG K
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSS-KTQQNVKAVFDTA 173
DLR D L + + ++ QG + KQIGAA YIECS+ +++ +V+ +F A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P Y+PTVF+N++A + + V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
+RPL Y +D +L F + + ++ LKKW E+ + P+ ++L+G K DLR D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQPP 181
L + H I+ QG + KQ+GA Y+E S+ T ++++ ++F TA + L P
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P Y+PTVF+N++A + + V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
+RPL Y +D +L F + + ++ LKKW E+ + P+ ++L+G K DLR D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQPP 181
L + H I+ QG + KQ+GA Y+E S+ T ++++ ++F TA + L P
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P Y+PTVF+N++A + + V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
+RPL Y +D +L F + + ++ LKKW E+ + P+ ++L+G K DLR D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQPP 181
L + H I+ QG + KQ+GA Y+E S+ T ++++ ++F TA + L P
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
S +K + +GDG VGK+ ++ Y +NKF + T+ F + ++ VDG V L +WDTA
Sbjct: 5 SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
GQE + LR YRGAD +L FS+ R S+EN L W E +A + P V++G
Sbjct: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
K+D +EDR +TT + + + G Y+E S+K NV F+ A++ V
Sbjct: 124 NKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
Query: 178 LQPPRRKE 185
L + E
Sbjct: 173 LAVEEQLE 180
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
S K + +GDG VGK+ ++ Y +NKF T T+ F + ++ VDG V + +WDTA
Sbjct: 7 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
GQE + LR YRG+D +L FS+ S++N L W E +A + P V++G
Sbjct: 67 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
K+D+ E + ++T + + + G Y E S+K NV A F+ A++ V
Sbjct: 126 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 178 L 178
L
Sbjct: 175 L 175
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
S K + +GDG VGK+ ++ Y +NKF T T+ F + ++ VDG V + +WDTA
Sbjct: 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
GQE + LR YRG+D +L FS+ S++N L W E +A + P V++G
Sbjct: 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
K+D+ E + ++T + + + G Y E S+K NV A F+ A++ V
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 178 L 178
L
Sbjct: 173 L 173
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
S K + +GDG VGK+ ++ Y +NKF + T+ F + ++ VDG V + +WDTA
Sbjct: 9 SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
GQE + LR YRG+D +L FS+ S++N L W E +A + P V++G
Sbjct: 69 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
K D++E + ++T + + K G Y E S+K NV A F+ A++ +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 178 L 178
L
Sbjct: 177 L 177
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F ++++ V L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + R S++NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDL- 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
V V+T+ +G EL G +IE S+K NV+ F T
Sbjct: 127 ---------VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHT 165
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDT 61
S +K + +GD VGK+C+L+ + +KF +I T+ +F V ++G V L LWDT
Sbjct: 4 GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKL 120
AGQE + + YRGA +L + + ++ N+ K+W + A + ++LVG K
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
D+ + V+T QGE L K++G +IE S+K NV +F T K++
Sbjct: 123 DME-----------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWD 60
S +K + +GD VGK+C+L+ + +KF +I T+ +F V ++G V L LWD
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTK 119
TAGQE + + YRGA +L + + ++ N+ K+W + A + ++LVG K
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
D+ + V+T QGE L K++G +IE S+K NV +F T K++ +
Sbjct: 135 SDME-----------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 182
Query: 180 P 180
Sbjct: 183 K 183
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 15/173 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQE 65
+K + +GD VGK+C+L+ + +KF +I T+ +F V ++G V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
+ + YRGA +L + + ++ N+ K+W + A + ++LVG K D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ V+T QGE L K++G +IE S+K NV +F T K++
Sbjct: 122 ----------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + +KF +I T+ +F V ++G V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRED 125
+ + YRGA +L + + ++ N+ K+W + A + ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ V+T QGE L K++G +IE S+K NV +F T K++
Sbjct: 122 ---------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ V +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
S +R R + F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ V +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
S +R R + F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + +KF +I T+ +F V ++G V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRED 125
+ + YRGA +L + + ++ N+ K+W + A + ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ V+T QGE L K++G +IE S+K NV +F T K++
Sbjct: 122 ---------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 19/185 (10%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
K + VGD VGKTC+L+ + F +I TV +F V VDG V L +WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
E + + YR A +L + + ++AS++N+ + W+ E+ +A +V ++L+G K+D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+R V+ GE+L K+ G ++E S+KT NV D A + + +R
Sbjct: 130 HER----------VVKREDGEKLAKEYG-LPFMETSAKTGLNV----DLAFTAIAKELKR 174
Query: 184 KEMMA 188
+ M A
Sbjct: 175 RSMKA 179
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ V +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
S +R R + F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ V +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
S +R R + F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 121 --------AGRTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+G VGKT +++ Y NKF +I T+ +F + + + G VNL +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
+ L P+ YR ++ +L + + S++ V K W+ ELR+ N + + +VG K+DL +
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+R HV + + E + +GA Y S+K + ++ +F
Sbjct: 126 ER-----HV-----SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+G VGKT +++ Y NKF +I T+ +F + + + G VNL +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
+ L P+ YR ++ +L + + S++ V K W+ ELR+ N + + +VG K+DL +
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+R HV + + E + +GA Y S+K + ++ +F
Sbjct: 126 ER-----HV-----SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+G VGKT +++ Y NKF +I T+ +F + + + G VNL +WDTAGQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
+ L P+ YR ++ +L + + S++ V K W+ ELR+ N + + +VG K+DL +
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+R HV + + E + +GA Y S+K + ++ +F
Sbjct: 140 ER-----HV-----SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ V +DG L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
S +R R + F+ F++ + S+E++ + +++R + +VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL--- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
S + T Q ++L + G +IE S+KT+Q V F T ++ +
Sbjct: 122 --------PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ V +DG L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
S +R R + F+ F++ + S+E++ + +++R + +VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL--- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
S + T Q ++L + G +IE S+KT+Q V F T ++ +
Sbjct: 122 --------PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + SY NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 128 TKK----------VVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMT 165
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + SY NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 128 TKK----------VVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMT 165
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
IK + +GD VGKT L YT NKF +I TV +F V +GS V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
+L LWDTAGQE + L +R A F+L F L S+ S+ NV + WM +L+ + N
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
IVL+G K DL + R + Q EL + G Y E S+ T QNV+ +T
Sbjct: 144 IVLIGNKADLPDQR----------EVNERQARELADKYG-IPYFETSAATGQNVEKAVET 192
Query: 173 AIKVVLQ 179
+ ++++
Sbjct: 193 LLDLIMK 199
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I+LVG K DLR
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
R + T + ++ G ++IE S+ NV+A F T +
Sbjct: 139 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 178
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 14/186 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y R+ YRGA +L + + +YENV ++W+ ELR A N+ I+LVG K DLR
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
R D + A+ L ++IE S+ NV+ F + + + +
Sbjct: 124 HLRAVPTDEARA----FAEKNNL-------SFIETSALDSTNVEEAFKNILTEIYRIVSQ 172
Query: 184 KEMMAR 189
K++ R
Sbjct: 173 KQIADR 178
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
R + T + ++ G ++IE S+ NV+A F T +
Sbjct: 148 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 187
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 152 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXT 189
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
+ + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 120 K----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 155
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
K V +GD GK+ +++ + ++F I F FS +AV+ + V +WDTAGQ
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 71
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 123
E Y L P+ YRGA ++ F + ++AS+E KKW+ EL+ + PN+ + L G K DL
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL 130
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ R TA+ + Q ++E S+KT NVK +F
Sbjct: 131 DARK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
IK + +GD VGKT L YT NKF +I TV +F V DG+ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + WM +L+ + N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
IVL+G K DL + R + Q EL ++ G Y E S+ T QNV+ +T
Sbjct: 130 IVLIGNKADLPDQR----------EVNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVVLQ 179
+ ++++
Sbjct: 179 LLDLIMK 185
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
IK + +GD VGKT L YT NKF +I TV +F V DG+ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + WM +L+ + N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
IVL+G K DL + R + Q EL ++ G Y E S+ T QNV+ +T
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVVLQ 179
+ ++++
Sbjct: 179 LLDLIMK 185
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 135 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 172
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 125 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 162
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 125 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 162
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 144 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 181
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTA 62
S K + +GD VGK+C+L +T KF D T+ F + V G + L +WDTA
Sbjct: 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
GQE + + YRGA ++ + + R++Y N L W+ + R PN I+L+G K D
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
L R +T + ++ ++ G ++E S+KT +NV+ F A K + Q
Sbjct: 132 LEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 135 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 172
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ V+ +E +G ++E S+K NV+ F T
Sbjct: 127 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 164
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 1 MSASK--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGS-IVNL 56
MS+ K +K + +GD VGKT ++ Y ++K+ Y T+ +F + V VDG + +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 57 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNV 111
+WDTAGQE + L YRGAD VL + + + +S+EN+ K W E A
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119
Query: 112 PIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
P V++G K+D E + +++ +EL K +G S+K NV F+
Sbjct: 120 PFVILGNKIDAEESK---------KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170
Query: 172 TAIKVVLQPPR 182
+ LQ +
Sbjct: 171 EIARSALQQNQ 181
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68 SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
+ +R +R + F+ FS+ S+ E +L+ E NVP +LVG K
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 129
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL ED+ ++ N R + Y+E S+KT+ NV VF
Sbjct: 130 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 168
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
+ +R +R + F+ FS+ S+ E +L+ E NVP +LVG K
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 133
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL ED+ ++ N R + Y+E S+KT+ NV VF
Sbjct: 134 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68 SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
+ +R +R + F+ FS+ S+ E +L+ E NVP +LVG K
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL ED+ ++ N R + Y+E S+KT+ NV VF
Sbjct: 122 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 160
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
+ +R L + F L +S+ +++++ N L+ ++ R +VP++LVG K DL ++
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R V+ QG+ L +Q A++E S+K++ NV +F
Sbjct: 124 R----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ +R +R + F+L FS+ S+ ++ + ++ +P+++VG K DL E
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R + S + EE Q Y+E S+KT+ NV VF
Sbjct: 129 RQVPVEEARS------KAEEWGVQ-----YVETSAKTRANVDKVF 162
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ +R +R + F+L FS+ S+ ++ + ++ +P+++VG K DL E
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R + S + EE Q Y+E S+KT+ NV VF
Sbjct: 125 RQVPVEEARS------KAEEWGVQ-----YVETSAKTRANVDKVF 158
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I+LVG K DLR
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
R + T + ++ G ++IE S+ NV+A F T +
Sbjct: 127 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 12/160 (7%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I + + F TDY PT+ D+++ +D L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79 DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
+ F+L FS+ R S+E + K LR + P++L+G K DL DH
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL--------DH--QRQ 127
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+T +G++L +Q+ Y+E S+K + NV F ++V+
Sbjct: 128 VTQEEGQQLARQL-KVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
R + T + ++ G ++IE S+ NV+A F T +
Sbjct: 148 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 187
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q RK
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q RK
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V +G G VGK+ + + + F +Y PT+ D++ V VD L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
+ +R L + F L +S+ +++++ N L+ ++ R +VP++LVG K DL ++
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R V+ QG+ L +Q A++E S+K++ NV +F
Sbjct: 124 R----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
+ +R +R + F+ FS+ S+ E +L+ E NVP +LVG K
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 119
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL ED+ ++ N R Y+E S+KT+ NV VF
Sbjct: 120 DL-EDKRQVSVEEAKN----------RADQWNVNYVETSAKTRANVDKVF 158
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I LVG K DLR
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
R + T + ++ G ++IE S+ NV+A F T +
Sbjct: 124 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q RK
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F + T+ F+ ++ VDG + +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I LVG K DLR
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
R + T + ++ G ++IE S+ NV+A F T +
Sbjct: 130 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 169
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG I L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
IK + +GD VGKT L YT NKF +I TV +F V DG+ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +L+ + N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
IVL+G K DL + R + Q EL ++ G Y E S+ T QNV+ +T
Sbjct: 130 IVLIGNKADLPDQR----------EVNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVV 177
+ ++
Sbjct: 179 LLDLI 183
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+ +L+ + N F YI T+ +F V ++G V L +WDTAGQ
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
E + + YRG ++ + + S S+ NV K+W+ E+ + +V +LVG K D E
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPE 127
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ V+ T + Q+G + E S+K NV+ +F+ ++VL+ +K
Sbjct: 128 RK----------VVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFNCITELVLRA--KK 174
Query: 185 EMMARKK 191
+ +A+++
Sbjct: 175 DNLAKQQ 181
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
IK + +GD VGKT L YT NKF +I TV +F V DG+ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +L+ + N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
IVL+G K DL + R + Q EL ++ G Y E S+ T QNV+ +T
Sbjct: 130 IVLIGNKADLPDQR----------EVNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVV 177
+ ++
Sbjct: 179 LLDLI 183
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
+ +R L + F L +S+ +++++ N L+ ++ R +VP++LVG K DL ++
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R V+ QG+ L +Q A++E S+K++ NV +F
Sbjct: 124 R----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTA 62
S K + +GD VGK+C+L +T KF D T+ F + V G + L +WDTA
Sbjct: 28 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
GQ + + YRGA ++ + + R++Y N L W+ + R PN I+L+G K D
Sbjct: 88 GQGRFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
L R +T + ++ ++ G ++E S+KT +NV+ F A K + Q
Sbjct: 147 LEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQ 64
K + +GD VGK+C+L+ +T +F + T+ F A + +DG + L +WDTAGQ
Sbjct: 10 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA +L + + R ++ N L W+ + R+ + N+ I+L+G K DL
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
R + +GE ++ G ++E S+KT NV+ F K + +
Sbjct: 129 SRR----------EVKKEEGEAFAREHG-LIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ + + DYI T+ +F V +DG V L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 123
E + + YRG+ ++ + + + S+ N +K W+ E+ R+A + + +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 EDR 126
+ R
Sbjct: 127 DKR 129
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDT 61
S K + +GD VGK+C+L+ +T +F + T+ F A V +DG + L +WDT
Sbjct: 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKL 120
AGQE + + YRGA +L + + R ++ N L W+ + R+ + N+ I+L+G K
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKS 136
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
DL R + +GE ++ G ++E S+KT NV+ F K +
Sbjct: 137 DLESRRD----------VKREEGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEI 182
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ + + DYI T+ +F V +DG V L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 123
E + + YRG+ ++ + + + S+ N +K W+ E+ R+A + + +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 EDR 126
+ R
Sbjct: 127 DKR 129
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
K + +G+ +VGKT L Y + F ++ TV +F + + + L +WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + + S+ N ++ W +++ ++ N ++LVG K D+ +
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+R V+++ +G +L +G + E S+K NVK F+ + V+
Sbjct: 125 ER----------VVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVI 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 83 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 130
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 131 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + ++F DY PT D++ V +DG V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68 SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
+ +R +R + F+ FS+ S+ E +L+ E NVP +LVG K
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL ED+ ++ N R + Y+E S+KT+ NV VF
Sbjct: 122 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 160
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
IK V VG+GAVGK+ M+ Y F DY T+ D + V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
++ + YRGA VL FS R S+E + W ++ ++P LV K+DL +D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFE-AISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ I + E L K++ Y S K NV VF
Sbjct: 125 ----------SCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
M+ S +K G VGK+ +++ + + +F +Y PT+ + +D +V++ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGT 118
TAGQED + R R + FVL + + R S+E V LK + E+++ NV ++LVG
Sbjct: 83 TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVF 170
K DL DH S ++T +GE+L ++ A A+ ECS+ T + N+ +F
Sbjct: 141 KADL--------DH--SRQVSTEEGEKLATEL-ACAFYECSACTGEGNITEIF 182
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 128
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 129 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 128
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 129 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K V +G VGK+ + + + F Y PT+ D++ V VD L + DTAG E +
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
+ +R L + F L +S+ +++++ N L+ ++ R +VP++LVG K DL ++
Sbjct: 67 TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R V+ QG+ L +Q A++E S+K++ NV +F
Sbjct: 126 R----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ + + DYI T+ +F V +DG V L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 123
E + + YRG+ ++ + + + S+ N +K W+ E+ R+A + + +LVG K DL+
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 EDR 126
+ R
Sbjct: 140 DKR 142
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
K + +G+ +VGKT L Y + F ++ TV +F V V L +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + + S+ N ++ W +++ ++ N ++LVG K D+ E
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+R V+ T +G+ L +Q+G + E S+K +V+ F+ + +
Sbjct: 143 ER----------VVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQ 64
K V +G+ VGKTC++ +T FP T+ D V ++G V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLR 123
E + + YR A+ +L + + S+ L +W+ E+ ++A N V VLVG K+DL
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVV 177
E R ++ + EE + Y+E S+K NV+ +F D A +++
Sbjct: 145 ERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG + DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 12 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQEDYSRL 70
+GD VGK+C+L+ + + + YI T+ +F + +DG + L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122
YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y P++ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y P++ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 82 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 129
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 130 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DT GQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ +++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DT GQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F ++ PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG+E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTA QE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTA QE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
IK V +G+ AVGK+ +++ + SN F + PT+ F + V ++ V +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
++ L P YR A ++ + + S+ + W+ EL A ++ I LVG K+D +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ G + +GE+L ++ G + E S+KT +NV VF
Sbjct: 123 EG-------GERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVF 160
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ + +++R + +VP+VLVG K DL S
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL-----------PSR 124
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ T Q ++L + G +IE S+KT+Q V F T ++ +
Sbjct: 125 TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ + +++R + +VP+VLVG K DL S
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL-----------PSR 124
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ T Q ++L + G +IE S+KT+Q V F T ++ +
Sbjct: 125 TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
+K + +G+ VGK+ +L+ +T + F + T+ +F ++VDG+ L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLR 123
+ L P YRGA +L + + R ++ L W+ EL + IV LVG K+D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
E+R V N +G + ++ + +IE S+KT V+ F+ ++ ++Q P
Sbjct: 134 ENR-----EVDRN-----EGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQTP 180
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 14/183 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N+F D T+ F+ + ++G + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA ++ + + +SYEN W+ ELR A NV + L+G K DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLA 131
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
R + T AQ +L + E S+ +NV F+ I + Q +
Sbjct: 132 HLRAVPTEESK----TFAQENQL-------LFTETSALNSENVDKAFEELINTIYQKVSK 180
Query: 184 KEM 186
+M
Sbjct: 181 HQM 183
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 14/183 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
K + +G GK+C+L + NKF D T+ F + V V G V L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YRGA +L + + SR +Y N L W+ + R A PN+ ++L G K DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
+R + AQ EL ++E S+ T +NV+ F + +L
Sbjct: 144 PER----EVTFLEASRFAQENEL-------MFLETSALTGENVEEAFLKCARTILNKIDS 192
Query: 184 KEM 186
E+
Sbjct: 193 GEL 195
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + KF Y T+ +F + V VD +V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
E + L YRGAD VL F + + +++ L W E R N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+DL E+R + T + + Y E S+K NV+ F T + L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
E+
Sbjct: 176 QETEVEL 182
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
K + +G+ +VGKT L Y + F ++ TV +F + + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + + S+ N ++ W +++ ++ N ++LVG K D +
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+R V+++ +G +L +G + E S+K NVK F+ + V+
Sbjct: 128 ER----------VVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVI 169
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
K + +G+ +VGKT L Y + F ++ TV +F V + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y + YRGA F+L + + ++ S+ V + W +++ ++ N ++LVG K DL +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+R V+ G L +G + E S+K NVK VF+ + V+
Sbjct: 142 ER----------VVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVI 183
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + KF Y T+ +F + V VD +V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
E + L YRGAD VL F + + +++ L W E R N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+DL E+R + T + + Y E S+K NV+ F T + L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
E+
Sbjct: 176 QETEVEL 182
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 128
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 129 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 127 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+ S +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGKTC+L ++ + F + +I T+ +F + +DG + L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
E + + YRGA +L + + + S++N+ + W+ + A +V +++G K D+
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ R ++ +GE+L G ++E S+K NV+ F T
Sbjct: 125 DKRQ----------VSKERGEKLALDYG-IKFMETSAKANINVENAFFT 162
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+ ++ + +++R + +VP+VLVG K DL +
Sbjct: 94 EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL-----------PTR 141
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
+ T Q EL K G +IE S+KT+Q V+ F T ++ + Q +K
Sbjct: 142 TVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ V +DG L + DTAG E+YS +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ + +++R + +VP+VLVG K DL S
Sbjct: 94 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL-----------PSR 141
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
+ T Q ++L + G +IE S+KT+Q V F T ++ +
Sbjct: 142 TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ V L LWDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + + V+ + + + S++ KW+ ++R +V I+LVG K DL +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R IT +GE+ K++ + +IE S+KT NVK +F
Sbjct: 122 KRQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLF 156
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K + +GD VGKTC+L ++ + F + +I T+ +F + +DG + L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
E + + YRGA +L + + + S++N+ + W+ + A +V +++G K D+
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
+ R ++ +GE+L G ++E S+K NV+ F T
Sbjct: 127 DKRQ----------VSKERGEKLALDYG-IKFMETSAKANINVENAFFT 164
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQE 65
++ + +G VGKT ++ +T + F TV +F V + G + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
++ + YR A +L + + + ++++ L KWM + ++A + ++LVG KLD
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
DR IT QGE+ +QI + E S+K NV +F + +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I N F + PT+ D++ V +DG L + DTAGQE+YS +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
+ F+ F++ + S+E++ ++ +++R + +VP+VLVG K DL +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+ + Q ++L + G YIE S+KT+Q V+ F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + ++ K W+ EL+R A PN+ I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 125 KRA-----------VEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
IK + +GD VGKT +L YT KF + +I TV +F V DG++ +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVP 112
+L LWDTAG E + L +R A F+L F L + S+ NV + W+ +L+ ++ N
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
IVL G K DL + R + + EL ++ G Y E S+ N+ +
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYG-IPYFETSAANGTNISHAIEM 178
Query: 173 AIKVVLQPPRR 183
+ ++++ R
Sbjct: 179 LLDLIMKRMER 189
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + KF Y T+ +F + V VD +V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
E + L YRGAD VL F + + +++ L W E R N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+D E+R + T + + Y E S+K NV+ F T + L+
Sbjct: 127 IDF-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
E+
Sbjct: 176 QETEVEL 182
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + ++ K W+ EL+R A PN+ I L G K DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 123 KRA-----------VEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQ 64
K + +G+ GK+C+L + KF D T+ F + + V G V L +WDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
E + + YRGA +L + + SR +Y N L W+ + R A N+ I+L G K DL
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
DR +T + ++ ++E S+ T +NV+ F + +L
Sbjct: 129 ADR----------EVTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILNKIES 177
Query: 184 KEM 186
E+
Sbjct: 178 GEL 180
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V VGD +VGKTC++ + + F T+ +F+ + + G V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E + + YR A+ +LA+ + R+S+ +V W+ ++R++A N+ +L+G K DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
E R ++ A+ + L + IE S+K NV+ F
Sbjct: 148 ELR----------EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV--DGSIVNLGLWDTAG 63
K V +GD VGK+ +L +T ++F + T+ F+ + I+ +WDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122
QE Y + YRGA +L + + + S+EN+ +KW+ ELR A N+ I+LVG K DL
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 REDRGYLADHVGSNVITT-AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
+ R + N T A+ E+L A+IE S+ NV+ F + +
Sbjct: 126 KHLRV-----INDNDATQYAKKEKL-------AFIETSALEATNVELAFHQLLNEIYNVR 173
Query: 182 RRKE 185
++K+
Sbjct: 174 QKKQ 177
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ VGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ VGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ VGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ VGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ VGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + + E S+KT NV +F
Sbjct: 127 KRA-----------VDFQEAQSYADDNSLLFXETSAKTSXNVNEIF 161
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2 SASKF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGL 58
SASK K V +G+ AVGK+ +++ + +F T+ F + +V +D + V +
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVG 117
WDTAGQE Y L P+ YRGA ++ + + ++ ++ K W+ EL+R A P++ I L G
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAG 120
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
K DL R + + + + ++E S+KT NV +F
Sbjct: 121 NKADLANKR-----------MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + KF Y T+ +F + V VD +V + +WDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
E + L YRGAD VL F + + +++ L W E R N P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
+DL E+R + T + + Y E S+K NV+ F T + L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
E+
Sbjct: 176 QETEVEL 182
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + S+ K W+ EL+R A PN+ I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 125 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
K + +G+ GK+C+L + KF D T+ F + + V G V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
E + + YRGA +L + + SR +Y N L W+ + R A N+ I+L G K DL
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 EDR 126
DR
Sbjct: 130 ADR 132
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
K V +G+ AVGK+ +++ + +F T+ F + V +D + V +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
Y L P+ YRGA ++ + + + ++ K W+ EL+R A PN+ I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R Q + + ++E S+KT NV +F
Sbjct: 125 KRA-----------VEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ V L LWDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + + V+ + + + S+ KW+ ++R +V I+LVG K DL +
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R ++T +GE K++ +IE S+K NVK +F
Sbjct: 134 KRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 13 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP 72
G G VGK+ +++ + F YIPTV D + ++ D SI L + DT G + ++
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73 LSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA 130
LS F+L +S+ SR S E + + + + E++ ++PI+LVG K
Sbjct: 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK----------C 119
Query: 131 DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176
D S + +++ E L + A++E S+K NVK +F + +
Sbjct: 120 DESPSREVQSSEAEALAR-TWKCAFMETSAKLNHNVKELFQELLNL 164
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWD 60
SA + +K +GD VGK+ ++ + + F + PT+ +F + V + +WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTK 119
TAGQE + L P+ YRG+ V+ + + + S+ LKKW+ EL+ P N+ + + G K
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL + R + +E + IGA +E S+K N++ +F
Sbjct: 138 CDLSDIRE----------VPLKDAKEYAESIGAIV-VETSAKNAINIEELF 177
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+PT+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 R 126
+
Sbjct: 130 K 130
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+PT+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLW 59
S+ K K V GD AVGK+ L+ N+F + T+ +F + VDG L LW
Sbjct: 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 60 DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGT 118
DTAGQE + + +R AD +L + + S+ N+ ++W+ + A VPI+LVG
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141
Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKV 176
K D+R+ A G + GE+L G A + E S+K N V+AV A +V
Sbjct: 142 KADIRD----TAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ V L LWDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + + V+ + + + S++ KW+ ++R +V I+LVG K DL +
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R ++ +GE K++ +IE S+K NVK +F
Sbjct: 121 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 155
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
K + +G+ GK+C+L + KF D T+ F + + V G V L +WDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
E + + YRGA +L + + SR +Y N L W+ + R A N+ I+L G K DL
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 EDR 126
DR
Sbjct: 127 ADR 129
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
K V +G+ AVGKT ++ + + F +Y T+ D S + +D V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPE-LRRFAPNVPIVLVGTKLDLRED 125
+ L P R + ++ + + +R S+EN KW+ + L +V I LVG K DL +
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R +T +G + + Q + E S+K N+K +F
Sbjct: 122 RK----------VTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWD 60
S S+ K + +GD VGKTC+ + + +FP T+ +F V +DG + + LWD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61 TAGQEDYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVPIVLVG 117
TAGQE + + + YR V + + + AS+ + L W+ E ++ A ++P +LVG
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLR 123
K DLR
Sbjct: 135 NKCDLR 140
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F YI T+ + + + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D++E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ V + IT + + L+ Y + S+K+ N + F
Sbjct: 125 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 156
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F YI T+ + + + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D++E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ V + IT + + L+ Y + S+K+ N + F
Sbjct: 124 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 155
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSI-VNLGLWDTAGQE 65
K V +G+ VGKT +L +T N+F D T+ FS + G+ V +WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
Y + YRGA +L F L +Y V+++W+ EL A + ++LVG K DL +
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
R + T + + G ++E S+ NV+ F+T +K + ++
Sbjct: 130 ARE----------VPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSI-VNLGLWDTAGQE 65
K V +G+ VGKT +L +T N+F D T+ FS + G+ V +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
Y + YRGA +L F L +Y V+++W+ EL A + ++LVG K DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
R + T + + G ++E S+ NV+ F+T +K +
Sbjct: 145 ARE----------VPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIF 187
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F YI T+ + + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D++E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ V + IT + + L+ Y + S+K+ N + F
Sbjct: 132 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 163
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
Y LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
M SK K +G +VGK+ + I + +F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYSRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLV 116
TAGQ++YS + P +Y DI ++L +S+ S S+E V+K +L V PI+LV
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
G K DL +R VI+ +G+ L + AA++E S+K Q VF
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 160
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
M SK K +G +VGK+ + I + +F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYSRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLV 116
TAGQ++YS + P +Y DI ++L +S+ S S+E V+K +L V PI+LV
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
G K DL +R VI+ +G+ L + AA++E S+K Q VF
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 160
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I + + F +DY PT+ D+++ +VDG L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79 DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
F+L F++ R S+ V K + LR + + P+VLVG K DL R +
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-- 139
Query: 138 ITTAQGEELRKQIGAA---AYIECSSKTQQNVKAVFDTAIKVV 177
GA+ AY E S+K + NV F+ ++ V
Sbjct: 140 ------------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 R 126
+
Sbjct: 130 K 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTA 62
S+ K + +GD VGKTC+ + + +FP T+ +F V +DG + + LWDTA
Sbjct: 27 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63 GQEDYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVPIVLVGTK 119
GQE + + + YR V + + AS+ + L W+ E ++ A ++P +LVG K
Sbjct: 87 GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRILVGNK 145
Query: 120 LDLR 123
DLR
Sbjct: 146 CDLR 149
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 121
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ + L LWDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + V+ + + + S++ KW+ ++R +V I+LVG K DL +
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R ++ +GE K++ +IE S+K NVK +F
Sbjct: 126 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ V L LWDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + + V+ + + + S++ KW+ ++R +V I+LVG K DL +
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R ++ +GE K++ +IE S+K NVK +F
Sbjct: 126 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I + F DY PT+ D++ + +D L + DTAGQE++S +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
D F++ +S+ +AS+E+V + LR + + P++LV K+DL R
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
+T QG+E+ + YIE S+K NV F ++V+ Q
Sbjct: 141 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 18/167 (10%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
K +G +VGK+ + I + +F Y PT+ + F+ + V+G +L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68 SRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLVGTKLDLR 123
S + P +Y DI ++L +S+ S S+E V+K +L V PI+LVG K DL
Sbjct: 63 S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+R VI+ +G+ L + AA++E S+K Q VF
Sbjct: 120 MER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 155
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I + F DY PT+ D++ + +D L + DTAGQE++S +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79 DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
D F++ +S+ +AS+E+V + LR + + P++LV K+DL R
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 135
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
+T QG+E+ + YIE S+K NV F ++V+ Q
Sbjct: 136 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 177
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ V L LWDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + + V+ + + + S++ KW+ ++R +V I+LVG K DL +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R ++ +GE K++ +IE S+K NVK +F
Sbjct: 136 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 170
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
K V +GD VGK+ +L +T+++F + T+ F+ + V+ + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
E Y + YRGA ++ + + +SYEN W+ ELR A NV + L+G K DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
R D A+ + Q+ + E S+ NV F I + Q +
Sbjct: 129 HLRAVPTDE--------AKNFAMENQM---LFTETSALNSDNVDKAFRELIVAIFQMVSK 177
Query: 184 KEM 186
++
Sbjct: 178 HQV 180
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
M ++ K V +G VGKT + + +F Y PTV + +S V + +L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61 TAGQEDYSRLRPLSY-RGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVPIVLVG 117
TAGQ++YS L P S+ G +VL +S+ S S++ V++ +L VP+VLVG
Sbjct: 79 TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVG 136
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
K DL +R + +G++L + G A ++E S++ Q + +F I+ +
Sbjct: 137 NKADLSPERE----------VQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEI 185
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I + F +Y PT+ D++ + +D L + DTAGQE++S +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
D F++ +S+ +AS+E+V + LR + + P++LV K+DL R
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
+T QG+E+ + YIE S+K NV F ++V+ Q
Sbjct: 141 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ L Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 126 R 126
+
Sbjct: 132 K 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 R 126
+
Sbjct: 126 K 126
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + I + F +Y PT+ D++ + +D L + DTAGQE++S +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
D F++ +S+ +AS+E+V + LR + + P++LV K+DL R
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
+T QG+E+ + YIE S+K NV F ++V+ Q
Sbjct: 141 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + +F Y+ T+ V + + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
K V VGDG GKT + + + + Y+ T+ V + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
+ LR Y A ++ F + SR +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
K V +G+ +VGKT ++ + + F Y T+ D S + ++ + L LWDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
+ L P R + V+ + + + S++ KW+ ++R +V I+LVG K DL +
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R ++ +GE K++ +IE S+K NVK +F
Sbjct: 133 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 167
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
SK K +G +VGK+ + I + +F PT+ + F+ + V+G +L L DTAG
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAG 61
Query: 64 QEDYSRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLVGTK 119
Q++YS + P +Y DI ++L +S+ S S+E V+K +L V PI+LVG K
Sbjct: 62 QDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNK 118
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL +R VI+ +G+ L + AA++E S+K Q VF
Sbjct: 119 KDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 158
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
+K +GD VGK+ ++ + + F + PT+ +F + V + +WDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
+ L P+ YRG+ ++ + + ++ + LK W+ ELR+ P++ + + G K DL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
R + ++ I A ++E S+K N+ +F
Sbjct: 125 VRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 159
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWD 60
SA + +K +GD VGK+ ++ + + F + PT+ +F + V + +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTK 119
TAG E + L P+ YRG+ ++ + + ++ + LK W+ ELR+ P++ + + G K
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
DL + R + ++ I A ++E S+K N+ +F
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 160
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ + + + + F Y PT+ D + + VD S L + DTAG E ++ +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79 DIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDL 122
F+L +SL+++ S++++ ++ + ++R+ VP++LVG K+DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD--GSIVNLGLWDTAGQE 65
K +GDG VGKT + +F +Y TV +D G+++ +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
+ L+ + Y GA +L F + SR + +N L +W+ E + N PIV+ K+D++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIK- 130
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+R ++ + V+ E Y E S+KT N F
Sbjct: 131 NRQKISKKLVMEVLKGKNYE----------YFEISAKTAHNFGLPF 166
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
K+ +++ + F YIPT+ D + ++ D S+ L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79 DIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSN 136
F+L FS+ S+ S E + + K + +++ ++P++LVG K D +
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE---------- 130
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+ T + + + Q A++E S+K NVK +F
Sbjct: 131 -VDTREAQAV-AQEWKCAFMETSAKMNYNVKELF 162
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSI-VNLGLWDTAGQ 64
+K V +GDGA GKT + C+ F Y T+ D F + + G++ V L +WD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV---PIV-LVGTKL 120
++ GA +L + + + S+EN L+ W +++ + P+V LVG K+
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 121 DLREDR 126
DL R
Sbjct: 126 DLEHMR 131
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNLGLWD 60
+ + V +G+ VGK+ + + D V D + + VDG +I+ L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR------RFAPNVPIV 114
G+ ++ L + D +++ +S+ RAS+E ELR R ++PI+
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKA-----SELRIQLRRARQTEDIPII 118
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
LVG K DL V ++ ++G + +IE S+ Q NVK +F+ +
Sbjct: 119 LVGNKSDL----------VRXREVSVSEGR-AXAVVFDCKFIETSAAVQHNVKELFEGIV 167
Query: 175 KVVLQPPRRKEMMARK 190
+ V KE R+
Sbjct: 168 RQVRLRRDSKEKNERR 183
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNLGLWD 60
+ + V +G+ VGK+ + + D V D + + VDG +I+ L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR------RFAPNVPIV 114
G+ ++ L + D +++ +S+ RAS+E ELR R ++PI+
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-----SELRIQLRRARQTEDIPII 118
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
LVG K DL V ++ ++G + +IE S+ Q NVK +F+ +
Sbjct: 119 LVGNKSDL----------VRXREVSVSEGR-AXAVVFDXKFIETSAAVQHNVKELFEGIV 167
Query: 175 KVVLQPPRRKEMMARK 190
+ V KE R+
Sbjct: 168 RQVRLRRDSKEKNERR 183
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNL 56
S + + + V +G+ VGK+ + + D V D + + VDG +I+ L
Sbjct: 2 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIV 114
+W+ G+ ++ L + D +++ +S+ RAS+E + +LRR ++PI+
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
LVG K DL V ++ ++G + +IE S+ Q NVK +F+ +
Sbjct: 119 LVGNKSDL----------VRCREVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEGIV 167
Query: 175 KVV 177
+ V
Sbjct: 168 RQV 170
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI 113
+ +WDTAGQE Y+ + PL YRGA ++ F IS ++ + K W+ +L + + N I
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 114 VLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
+LV K+D + + + + V AQ L +I+ S+KT N+K +F
Sbjct: 151 ILVANKIDKNKFQVDILE-----VQKYAQDNNL-------LFIQTSAKTGTNIKNIF 195
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNL 56
S + + + V +G+ VGK+ + + D V D + + VDG +I+ L
Sbjct: 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIV 114
+W+ G+ ++ L + D +++ +S+ RAS+E + +LRR ++PI+
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 149
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
LVG K DL V ++ ++G + +IE S+ Q NVK +F+ +
Sbjct: 150 LVGNKSDL----------VRCREVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEGIV 198
Query: 175 KVV 177
+ V
Sbjct: 199 RQV 201
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQE 65
K + VG+ VGK+ + + + + + P D + + VD V L ++D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 66 DYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL 122
D LR + D F++ FS+ R S+ V + + LR P ++P++LVG K DL
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 142
Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
R ++ +G L + + +IE S+ N + +F+ A++ +
Sbjct: 143 ARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVAVDGSIVNLGLWDTAG 63
K + VG+ VGK+ + T D+ + D + + VD V L ++D
Sbjct: 3 FKVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 64 QEDYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKL 120
Q D L+ + D F++ FS+ R S+ V + + LR P ++P++LVG K
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKS 119
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
DL R ++ +G L + + +IE S+ N + +F+ A++ +
Sbjct: 120 DLARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT--AGQE 65
+ V +GD VGKT + + + + D + + VDG L + DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLR 123
D S + +G +V+ +S+ R S+E+ + +LRR A +VPI+LVG K DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADL- 123
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAA-------AYIECSSKTQQNVKAVFD 171
A+ E+ + G A +IE S+ Q NV +F+
Sbjct: 124 -----------------ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65
K + +G+ VGK+ + + + + + D + + VD V L ++D Q
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 66 DYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL 122
D L+ + D F++ FS+ R S+ V + + LR P ++P++LVG K DL
Sbjct: 73 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 131
Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
R ++ +G L + + +IE S+ N + +F+ A++ +
Sbjct: 132 ARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
+ +G GK+ + + + + +F ++Y P + D +S+ VD V+L + DTA D
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL-D 80
Query: 67 YSRLRPLSYRGADIFVLAFSL------ISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
R A F++ +S+ S +SY +L E +R ++P +L+G KL
Sbjct: 81 TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR---SIPALLLGNKL 137
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
D+ + R +T A+G L + G + + ++V+ VF A++
Sbjct: 138 DMAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
MS K + +G VGK+ + + + + + ++ VDG +L ++D
Sbjct: 2 MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYD 60
Query: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGT 118
Q+ L D +V+ +S+ + S+E + +LRR +VPI+LVG
Sbjct: 61 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGN 119
Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
K DL V S ++ +G + +IE S+ NV+A+F+ ++ +
Sbjct: 120 KSDL----------VRSREVSVDEGRAC-AVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 8 KCVTVGDGAVGKTCMLICYTS--NKFPTDYIPTV-FDNFSANVAVDGSIVNLGLW--DTA 62
K VG+ VGK+ ++ +TS +KF DY T + A V + + V++ L+ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN----VPIVLVGT 118
G + Y + G +L F + S S+E+ K W L+ P+ + VLV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 119 KLDLREDR 126
K DL R
Sbjct: 141 KTDLPPQR 148
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
++ VG GKT + S +F D IPTV F+ G+ V + +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPR 79
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYE-------NVLKKWMPELRRFAPNVPIVLVGTK 119
+ + RG + V R E N+L K P+L+ +P++++G K
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNK 133
Query: 120 LDL 122
DL
Sbjct: 134 RDL 136
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVL 115
L +WD AG+E++ P +++ + L + + K W+ ++ A + P++L
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 116 VGTKLDLREDR 126
VGT LD+ +++
Sbjct: 116 VGTHLDVSDEK 126
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVL 115
L +WD AG+E++ P +++ + L + + K W+ ++ A + P++L
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 116 VGTKLDLREDR 126
VGT LD+ +++
Sbjct: 118 VGTHLDVSDEK 128
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 42 NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWM 101
+ ++ VDG +L ++D Q+ L D +V+ +S+ + S+E +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELR 95
Query: 102 PELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159
+LRR +VPI+LVG K DL V S ++ +G + +IE S
Sbjct: 96 VQLRRARQTDDVPIILVGNKSDL----------VRSREVSVDEGRAC-AVVFDCKFIETS 144
Query: 160 SKTQQNVKAVFDTAIKVV 177
+ NV+A+F+ ++ +
Sbjct: 145 AALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 42 NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWM 101
+ ++ VDG +L ++D Q+ L D +V+ +S+ + S+E +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELR 100
Query: 102 PELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159
+LRR +VPI+LVG K DL V S ++ +G + +IE S
Sbjct: 101 VQLRRARQTDDVPIILVGNKSDL----------VRSREVSVDEGRAC-AVVFDCKFIETS 149
Query: 160 SKTQQNVKAVFDTAIKVV 177
+ NV+A+F+ ++ +
Sbjct: 150 AALHHNVQALFEGVVRQI 167
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
++ VG GKT + S +F D IPTV F+ G+ V + LWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPR 79
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYE-------NVLKKWMPELRRFAPNVPIVLVGTK 119
+ + RG V + E N+L K P+L+ +P++++G K
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNK 133
Query: 120 LDL 122
DL
Sbjct: 134 RDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
++ VG GKT + S +F D IPTV F+ G+ V + LWD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPR 88
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYE-------NVLKKWMPELRRFAPNVPIVLVGTK 119
+ + RG V + E N+L K P+L+ +P++++G K
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNK 142
Query: 120 LDL 122
DL
Sbjct: 143 RDL 145
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
+K VG+ + GK+ ++ Y + + + P F + VDG L + D G +
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRED 125
L+ ++ A +FV FSL S++ V ++ R A VP+VLVGT+ +
Sbjct: 80 ---LQFAAWVDAVVFV--FSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI--- 131
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVV 177
VI ++ +L + Y E + NV+ VF D A KVV
Sbjct: 132 -----SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 1 MSASKFIKCVTVGDGAVGKTCM--LICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGL 58
MS++ K + +G GK+ M +I + F T + D +++ G++ L L
Sbjct: 1 MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMT-LNL 59
Query: 59 WDTAGQ----EDY-SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNV 111
WD GQ E+Y ++ + ++ + + F + S +++ K + +LR+++P+
Sbjct: 60 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 119
Query: 112 PIVLVGTKLDL 122
I ++ K+DL
Sbjct: 120 KIFVLLHKMDL 130
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 100 WMPELRRFAPNVPIVLVGTKLDL 122
W+P L RF N ++LVG K DL
Sbjct: 86 WLPGLHRFVGNNKVLLVGNKADL 108
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 56 LGLWDTAGQ----EDY-SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFA 108
L LWD GQ E+Y ++ + ++ + + F + S +++ K + +LR+++
Sbjct: 54 LNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 113
Query: 109 PNVPIVLVGTKLDL 122
P+ I ++ K DL
Sbjct: 114 PDAKIFVLLHKXDL 127
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 41 DNFSANVAVDGSIV-NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKK 99
+ F VDG + N G W + S + P R + A + A+Y +K+
Sbjct: 371 EQFFMQHLVDGDLAANNGGWQWSAS---SGMDPKPLRIFNPASQAKKFDATATY---IKR 424
Query: 100 WMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153
W+PELR P L+ ++ E RGY A V N + Q + L Q+ AA
Sbjct: 425 WLPELRHVHPK---DLISGEITPIERRGYPAPIVNHN-LRQKQFKALYNQLKAA 474
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 41 DNFSANVAVDGSIV-NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKK 99
+ F VDG + N G W + S + P R + A + A+Y +K+
Sbjct: 370 EQFFMQHLVDGDLAANNGGWQWSAS---SGMDPKPLRIFNPASQAKKFDATATY---IKR 423
Query: 100 WMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153
W+PELR P L+ ++ E RGY A V N + Q + L Q+ AA
Sbjct: 424 WLPELRHVHPK---DLISGEITPIERRGYPAPIVNHN-LRQKQFKALYNQLKAA 473
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 100 WMPELRRFAPNVPIVLVGTKLDL 122
++P L RFA + PI+LVG K DL
Sbjct: 88 FIPGLPRFAADNPILLVGNKADL 110
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 129 LADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163
LAD NVIT GE+ K++G +Y+ +Q
Sbjct: 210 LADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQ 244
>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
Length = 473
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 88 ISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY--LADHVGSNVITTA---- 141
++ A ++N + E+R+F + +ED G L + G+ +I TA
Sbjct: 120 LTIAKFQNFVPAIQHEVRKFMAE----------NWKEDEGVINLLEDCGAMIINTACQCL 169
Query: 142 QGEELRKQIGAAAYIECSSKTQQNV--KAVF 170
GE+LRK++ A + + SK + ++ AVF
Sbjct: 170 FGEDLRKRLNARHFAQLLSKMESSLIPAAVF 200
>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
From Trypanosoma Cruzi In Complex With Inhibitor
Fluconazole
Length = 464
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 88 ISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY--LADHVGSNVITTA---- 141
++ A ++N + E+R+F + +ED G L + G+ +I TA
Sbjct: 111 LTIAKFQNFVPAIQHEVRKFMAE----------NWKEDEGVINLLEDCGAMIINTACQCL 160
Query: 142 QGEELRKQIGAAAYIECSSKTQQNV--KAVF 170
GE+LRK++ A + + SK + ++ AVF
Sbjct: 161 FGEDLRKRLNARHFAQLLSKMESSLIPAAVF 191
>pdb|3K1O|A Chain A, Crystal Structure Of Sterol 14-alpha Demethylase (cyp51)
From Trypanosoma Cruzi In Complex With A Potential
Antichagasic Drug, Posaconazole
pdb|3KSW|A Chain A, Crystal Structure Of Sterol 14alpha-demethylase (cyp51)
From Trypanosoma Cruzi In Complex With An Inhibitor Vnf
((4-(4-
Chlorophenyl)-n-[2-(1h-imidazol-1-yl)-1-
phenylethyl]benzamide)
Length = 458
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 88 ISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY--LADHVGSNVITTA---- 141
++ A ++N + E+R+F + +ED G L + G+ +I TA
Sbjct: 105 LTIAKFQNFVPAIQHEVRKFMAE----------NWKEDEGVINLLEDCGAMIINTACQCL 154
Query: 142 QGEELRKQIGAAAYIECSSKTQQNV--KAVF 170
GE+LRK++ A + + SK + ++ AVF
Sbjct: 155 FGEDLRKRLNARHFAQLLSKMESSLIPAAVF 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,966,128
Number of Sequences: 62578
Number of extensions: 232758
Number of successful extensions: 1347
Number of sequences better than 100.0: 307
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 309
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)