Query 028239
Match_columns 211
No_of_seqs 134 out of 1626
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.3E-41 9.3E-46 237.9 16.8 170 4-184 7-178 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 5.1E-40 1.1E-44 231.6 18.6 171 3-185 2-174 (200)
3 cd01875 RhoG RhoG subfamily. 100.0 3.3E-38 7.2E-43 233.1 21.9 176 5-180 2-179 (191)
4 cd04133 Rop_like Rop subfamily 100.0 5E-38 1.1E-42 228.6 22.4 173 7-179 2-174 (176)
5 KOG0080 GTPase Rab18, small G 100.0 8.1E-39 1.7E-43 218.7 16.6 169 5-185 10-181 (209)
6 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.9E-38 8.4E-43 230.5 21.3 176 3-178 2-180 (182)
7 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.2E-38 6.9E-43 237.9 20.6 177 4-180 11-190 (232)
8 KOG0394 Ras-related GTPase [Ge 100.0 1.2E-38 2.7E-43 222.6 16.1 171 4-183 7-183 (210)
9 KOG0098 GTPase Rab2, small G p 100.0 6.1E-39 1.3E-43 224.6 14.3 175 1-187 1-177 (216)
10 cd04121 Rab40 Rab40 subfamily. 100.0 6.1E-38 1.3E-42 230.5 19.4 168 3-182 3-171 (189)
11 cd04131 Rnd Rnd subfamily. Th 100.0 2.3E-37 5.1E-42 225.9 21.3 173 6-178 1-176 (178)
12 KOG0078 GTP-binding protein SE 100.0 7.5E-38 1.6E-42 224.5 17.8 171 2-184 8-180 (207)
13 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 9.6E-38 2.1E-42 220.2 17.1 166 5-182 21-189 (221)
14 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.6E-37 5.6E-42 231.8 19.8 175 7-181 2-179 (222)
15 cd04134 Rho3 Rho3 subfamily. 100.0 2.6E-36 5.5E-41 222.7 22.1 187 7-201 1-189 (189)
16 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.3E-36 5E-41 220.3 21.5 172 6-177 1-174 (175)
17 cd04120 Rab12 Rab12 subfamily. 100.0 1.4E-36 3E-41 225.4 19.9 163 7-180 1-165 (202)
18 PTZ00369 Ras-like protein; Pro 100.0 1.9E-36 4E-41 223.5 20.4 184 4-200 3-188 (189)
19 cd04132 Rho4_like Rho4-like su 100.0 2.4E-36 5.2E-41 222.6 20.2 186 7-201 1-187 (187)
20 cd04144 Ras2 Ras2 subfamily. 100.0 7.1E-37 1.5E-41 225.9 17.0 182 8-201 1-190 (190)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.2E-36 4.7E-41 219.9 19.2 162 6-179 2-165 (172)
22 cd01871 Rac1_like Rac1-like su 100.0 1.1E-35 2.5E-40 216.4 20.7 171 6-176 1-173 (174)
23 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-35 4.9E-40 219.7 21.2 170 7-187 1-177 (201)
24 KOG0079 GTP-binding protein H- 100.0 8.2E-37 1.8E-41 206.1 11.2 165 5-181 7-172 (198)
25 KOG0087 GTPase Rab11/YPT3, sma 100.0 8.4E-36 1.8E-40 213.1 15.8 174 4-189 12-187 (222)
26 smart00174 RHO Rho (Ras homolo 100.0 1.1E-34 2.4E-39 211.2 21.2 171 9-179 1-173 (174)
27 cd04122 Rab14 Rab14 subfamily. 100.0 9.1E-35 2E-39 210.2 19.6 162 6-179 2-165 (166)
28 cd04136 Rap_like Rap-like subf 100.0 1E-34 2.2E-39 209.2 19.5 160 6-177 1-162 (163)
29 KOG0093 GTPase Rab3, small G p 100.0 1.4E-35 2.9E-40 200.0 13.7 166 5-182 20-187 (193)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 1.2E-34 2.6E-39 209.1 19.4 161 6-178 1-163 (164)
31 cd04110 Rab35 Rab35 subfamily. 100.0 1.9E-34 4.2E-39 214.4 20.1 166 4-181 4-170 (199)
32 KOG0086 GTPase Rab4, small G p 100.0 9.4E-36 2E-40 202.2 11.7 174 4-189 7-182 (214)
33 cd04135 Tc10 TC10 subfamily. 100.0 8.6E-34 1.9E-38 206.6 21.8 172 7-178 1-174 (174)
34 cd04125 RabA_like RabA-like su 100.0 2.3E-34 5E-39 212.2 19.0 168 7-186 1-170 (188)
35 cd04109 Rab28 Rab28 subfamily. 100.0 2.4E-34 5.3E-39 216.2 19.3 162 7-180 1-168 (215)
36 PF00071 Ras: Ras family; Int 100.0 2.3E-34 5E-39 207.2 18.0 159 8-178 1-161 (162)
37 cd01867 Rab8_Rab10_Rab13_like 100.0 4.3E-34 9.3E-39 206.9 19.5 163 5-179 2-166 (167)
38 cd04117 Rab15 Rab15 subfamily. 100.0 6.6E-34 1.4E-38 204.8 19.6 158 7-176 1-160 (161)
39 cd04127 Rab27A Rab27a subfamil 100.0 5.2E-34 1.1E-38 208.8 18.9 164 4-179 2-178 (180)
40 cd04176 Rap2 Rap2 subgroup. T 100.0 8.5E-34 1.8E-38 204.5 19.6 160 6-177 1-162 (163)
41 cd04112 Rab26 Rab26 subfamily. 100.0 4.6E-34 1E-38 211.1 18.4 165 7-183 1-168 (191)
42 smart00173 RAS Ras subfamily o 100.0 7.6E-34 1.6E-38 204.9 19.1 160 7-178 1-162 (164)
43 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.9E-33 4.1E-38 204.7 21.3 169 7-175 1-171 (173)
44 cd04126 Rab20 Rab20 subfamily. 100.0 8.9E-34 1.9E-38 212.6 19.8 173 7-184 1-196 (220)
45 KOG0393 Ras-related small GTPa 100.0 7.5E-35 1.6E-39 209.9 13.3 179 4-182 2-183 (198)
46 cd01865 Rab3 Rab3 subfamily. 100.0 1.5E-33 3.1E-38 203.8 20.0 160 7-178 2-163 (165)
47 PLN03071 GTP-binding nuclear p 100.0 1.6E-33 3.4E-38 212.1 20.9 163 4-180 11-174 (219)
48 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-33 3.3E-38 206.5 19.8 171 7-185 1-173 (182)
49 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.6E-33 3.4E-38 202.5 19.5 159 6-177 1-161 (162)
50 cd04140 ARHI_like ARHI subfami 100.0 1.7E-33 3.6E-38 203.4 19.3 158 7-176 2-163 (165)
51 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.4E-33 5.3E-38 202.7 19.9 161 6-178 2-164 (166)
52 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.7E-33 5.8E-38 201.9 19.5 160 6-177 2-163 (164)
53 cd04142 RRP22 RRP22 subfamily. 100.0 4.5E-33 9.8E-38 206.4 21.2 184 7-201 1-198 (198)
54 cd00877 Ran Ran (Ras-related n 100.0 6E-33 1.3E-37 200.7 20.7 160 7-180 1-161 (166)
55 cd04124 RabL2 RabL2 subfamily. 100.0 5.3E-33 1.2E-37 200.0 20.3 159 7-180 1-160 (161)
56 cd01873 RhoBTB RhoBTB subfamil 100.0 5.5E-33 1.2E-37 205.3 20.8 168 6-176 2-194 (195)
57 cd04119 RJL RJL (RabJ-Like) su 100.0 3.1E-33 6.8E-38 202.1 19.0 161 7-179 1-168 (168)
58 cd04116 Rab9 Rab9 subfamily. 100.0 5E-33 1.1E-37 201.8 19.8 163 2-176 1-169 (170)
59 KOG0088 GTPase Rab21, small G 100.0 1.2E-34 2.6E-39 197.9 10.2 171 3-185 10-182 (218)
60 cd04106 Rab23_lke Rab23-like s 100.0 3.6E-33 7.8E-38 200.9 18.5 158 7-176 1-161 (162)
61 PLN03108 Rab family protein; P 100.0 5E-33 1.1E-37 208.3 19.9 169 1-181 1-171 (210)
62 cd01864 Rab19 Rab19 subfamily. 100.0 5.2E-33 1.1E-37 200.8 19.2 161 5-176 2-164 (165)
63 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-32 2.4E-37 204.0 20.4 167 7-181 1-169 (193)
64 KOG0091 GTPase Rab39, small G 100.0 3.2E-34 7E-39 196.7 10.9 168 5-184 7-179 (213)
65 cd01870 RhoA_like RhoA-like su 100.0 2.2E-32 4.8E-37 199.3 21.4 171 7-177 2-174 (175)
66 cd04111 Rab39 Rab39 subfamily. 100.0 6.1E-33 1.3E-37 207.8 18.7 165 6-182 2-170 (211)
67 cd04103 Centaurin_gamma Centau 100.0 1.2E-32 2.5E-37 197.5 19.1 155 7-176 1-157 (158)
68 KOG0095 GTPase Rab30, small G 100.0 5.8E-34 1.3E-38 192.8 11.2 171 4-186 5-177 (213)
69 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.4E-32 3E-37 199.5 19.3 162 8-179 2-166 (170)
70 PLN03110 Rab GTPase; Provision 100.0 1E-32 2.2E-37 207.4 19.2 164 5-180 11-176 (216)
71 cd04113 Rab4 Rab4 subfamily. 100.0 1.6E-32 3.4E-37 197.5 18.8 158 7-176 1-160 (161)
72 cd01866 Rab2 Rab2 subfamily. 100.0 2.7E-32 5.9E-37 197.7 20.1 163 5-179 3-167 (168)
73 cd04177 RSR1 RSR1 subgroup. R 100.0 3.1E-32 6.6E-37 197.4 20.1 162 6-178 1-164 (168)
74 cd04129 Rho2 Rho2 subfamily. 100.0 5.8E-32 1.3E-36 199.2 21.5 175 7-181 2-176 (187)
75 cd04146 RERG_RasL11_like RERG/ 100.0 1.4E-32 2.9E-37 198.6 17.8 159 8-178 1-164 (165)
76 cd01868 Rab11_like Rab11-like. 100.0 3.1E-32 6.7E-37 196.7 19.6 161 5-177 2-164 (165)
77 cd04143 Rhes_like Rhes_like su 100.0 1.5E-32 3.3E-37 209.6 18.8 164 7-181 1-174 (247)
78 smart00176 RAN Ran (Ras-relate 100.0 3.2E-32 6.9E-37 201.7 19.1 155 12-180 1-156 (200)
79 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.9E-32 1.1E-36 196.7 19.4 161 5-177 1-168 (170)
80 PLN03118 Rab family protein; P 100.0 1.3E-31 2.8E-36 201.0 21.6 167 4-182 12-181 (211)
81 cd00157 Rho Rho (Ras homology) 100.0 2.4E-31 5.2E-36 192.9 20.7 169 7-175 1-170 (171)
82 smart00175 RAB Rab subfamily o 100.0 1.6E-31 3.5E-36 192.6 19.3 161 7-179 1-163 (164)
83 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-31 2.9E-36 193.1 18.8 159 7-177 1-163 (164)
84 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-31 3.2E-36 194.0 18.8 164 4-179 2-167 (169)
85 cd01860 Rab5_related Rab5-rela 100.0 2.2E-31 4.7E-36 191.8 19.3 160 6-177 1-162 (163)
86 KOG0081 GTPase Rab27, small G 100.0 4E-34 8.7E-39 195.4 4.7 168 5-184 8-187 (219)
87 cd01862 Rab7 Rab7 subfamily. 100.0 2.5E-31 5.4E-36 193.0 19.3 163 7-180 1-169 (172)
88 cd01861 Rab6 Rab6 subfamily. 100.0 3.1E-31 6.7E-36 190.6 19.0 158 7-176 1-160 (161)
89 cd04148 RGK RGK subfamily. Th 100.0 4.9E-31 1.1E-35 198.8 19.3 160 7-180 1-165 (221)
90 cd04123 Rab21 Rab21 subfamily. 100.0 1.1E-30 2.3E-35 187.7 19.6 159 7-177 1-161 (162)
91 cd01863 Rab18 Rab18 subfamily. 100.0 1.2E-30 2.6E-35 187.6 19.8 157 7-176 1-160 (161)
92 KOG0395 Ras-related GTPase [Ge 100.0 2.8E-31 6E-36 195.3 16.7 163 5-179 2-166 (196)
93 cd04139 RalA_RalB RalA/RalB su 100.0 9.9E-31 2.2E-35 188.3 19.3 160 7-178 1-162 (164)
94 cd04137 RheB Rheb (Ras Homolog 100.0 6.9E-31 1.5E-35 192.3 17.9 162 7-180 2-165 (180)
95 cd00876 Ras Ras family. The R 100.0 1.3E-30 2.9E-35 186.9 17.1 158 8-177 1-160 (160)
96 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.6E-33 9.9E-38 185.1 3.9 163 10-184 1-166 (192)
97 cd01893 Miro1 Miro1 subfamily. 100.0 4.8E-30 1E-34 185.5 18.8 164 7-179 1-165 (166)
98 cd04114 Rab30 Rab30 subfamily. 100.0 1.1E-29 2.3E-34 184.1 20.6 165 1-177 1-168 (169)
99 KOG0097 GTPase Rab14, small G 100.0 8.4E-31 1.8E-35 176.1 12.5 170 3-184 8-179 (215)
100 cd04149 Arf6 Arf6 subfamily. 100.0 1.4E-30 3E-35 188.6 14.5 156 4-175 7-167 (168)
101 cd04147 Ras_dva Ras-dva subfam 100.0 1E-29 2.2E-34 188.9 19.5 166 8-184 1-169 (198)
102 PLN00223 ADP-ribosylation fact 100.0 6.4E-30 1.4E-34 187.2 16.8 157 4-179 15-179 (181)
103 cd04158 ARD1 ARD1 subfamily. 100.0 9.5E-30 2E-34 184.5 17.1 157 8-181 1-164 (169)
104 cd00154 Rab Rab family. Rab G 100.0 1.7E-29 3.7E-34 180.4 17.7 157 7-175 1-159 (159)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-29 2.6E-34 186.2 16.6 161 5-179 2-171 (183)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.9E-30 4.2E-35 187.2 11.9 152 9-175 2-163 (164)
107 PTZ00133 ADP-ribosylation fact 100.0 1.6E-29 3.5E-34 185.3 16.6 161 4-180 15-180 (182)
108 smart00177 ARF ARF-like small 100.0 3E-29 6.4E-34 182.9 17.5 159 4-178 11-174 (175)
109 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.1E-29 6.7E-34 180.0 16.2 153 7-175 1-158 (159)
110 PTZ00132 GTP-binding nuclear p 100.0 1.6E-28 3.4E-33 184.8 20.7 166 2-181 5-171 (215)
111 cd04154 Arl2 Arl2 subfamily. 100.0 9.4E-29 2E-33 179.9 16.2 155 4-175 12-172 (173)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 8.1E-28 1.8E-32 178.1 18.3 146 7-164 1-176 (202)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1E-27 2.2E-32 174.6 16.5 155 4-175 13-173 (174)
114 cd04157 Arl6 Arl6 subfamily. 100.0 9.7E-28 2.1E-32 172.5 14.9 152 8-175 1-161 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 4.7E-28 1E-32 175.3 12.2 157 8-175 1-166 (167)
116 cd00879 Sar1 Sar1 subfamily. 100.0 2.4E-27 5.1E-32 175.0 15.9 157 4-177 17-190 (190)
117 cd04151 Arl1 Arl1 subfamily. 100.0 2.7E-27 5.8E-32 169.8 14.1 151 8-175 1-157 (158)
118 PF00025 Arf: ADP-ribosylation 100.0 7E-27 1.5E-31 170.2 16.2 160 2-177 10-175 (175)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 7.3E-27 1.6E-31 168.8 15.5 152 8-175 1-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.3E-27 1.4E-31 168.1 14.9 151 8-175 1-159 (160)
121 smart00178 SAR Sar1p-like memb 99.9 1.3E-26 2.8E-31 170.2 15.7 156 4-176 15-183 (184)
122 PLN00023 GTP-binding protein; 99.9 2.3E-26 4.9E-31 178.5 17.4 148 3-155 18-192 (334)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2E-26 4.3E-31 165.1 16.0 151 8-175 1-157 (158)
124 PTZ00099 rab6; Provisional 99.9 5.3E-26 1.1E-30 165.4 16.9 141 29-181 3-145 (176)
125 KOG4252 GTP-binding protein [S 99.9 1.8E-28 4E-33 171.0 2.3 172 4-187 18-190 (246)
126 cd01897 NOG NOG1 is a nucleola 99.9 3E-25 6.5E-30 160.5 17.1 156 7-178 1-168 (168)
127 cd01890 LepA LepA subfamily. 99.9 1.3E-25 2.9E-30 164.1 15.2 154 8-177 2-176 (179)
128 cd04159 Arl10_like Arl10-like 99.9 2.9E-25 6.3E-30 158.6 15.8 151 8-175 1-158 (159)
129 KOG0073 GTP-binding ADP-ribosy 99.9 3.4E-25 7.5E-30 152.4 14.8 160 3-179 13-179 (185)
130 cd01898 Obg Obg subfamily. Th 99.9 7.8E-25 1.7E-29 158.6 15.4 156 8-176 2-169 (170)
131 TIGR00231 small_GTP small GTP- 99.9 2.4E-24 5.2E-29 153.4 17.1 157 6-174 1-160 (161)
132 cd04155 Arl3 Arl3 subfamily. 99.9 1.5E-24 3.4E-29 157.6 15.4 153 4-175 12-172 (173)
133 TIGR02528 EutP ethanolamine ut 99.9 2.8E-25 6E-30 156.5 10.4 135 8-174 2-141 (142)
134 COG1100 GTPase SAR1 and relate 99.9 4.1E-24 8.9E-29 161.1 16.6 178 6-184 5-191 (219)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 8.9E-24 1.9E-28 167.4 16.1 160 7-179 159-329 (335)
136 cd01878 HflX HflX subfamily. 99.9 4.2E-24 9.1E-29 159.4 13.5 156 4-177 39-204 (204)
137 KOG0070 GTP-binding ADP-ribosy 99.9 1.1E-23 2.4E-28 148.6 13.5 162 2-179 13-179 (181)
138 PRK15494 era GTPase Era; Provi 99.9 3E-23 6.5E-28 165.3 17.5 162 1-181 47-219 (339)
139 cd04171 SelB SelB subfamily. 99.9 1.8E-23 3.9E-28 150.4 13.9 153 8-175 2-163 (164)
140 cd00882 Ras_like_GTPase Ras-li 99.9 4E-23 8.8E-28 145.8 15.4 153 11-174 1-156 (157)
141 TIGR00436 era GTP-binding prot 99.9 3.8E-23 8.2E-28 160.4 16.3 156 8-181 2-167 (270)
142 KOG0075 GTP-binding ADP-ribosy 99.9 2.5E-24 5.4E-29 145.6 8.4 155 6-178 20-182 (186)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.3E-23 1.8E-27 147.6 15.5 158 8-178 2-166 (168)
144 cd01879 FeoB Ferrous iron tran 99.9 1.1E-22 2.3E-27 145.5 15.7 147 11-177 1-156 (158)
145 cd01894 EngA1 EngA1 subfamily. 99.9 6.7E-23 1.4E-27 146.3 13.7 147 10-177 1-157 (157)
146 KOG3883 Ras family small GTPas 99.9 2.6E-22 5.7E-27 136.7 15.6 170 5-186 8-183 (198)
147 PRK03003 GTP-binding protein D 99.9 7.1E-23 1.5E-27 170.1 14.8 163 5-181 210-385 (472)
148 TIGR03156 GTP_HflX GTP-binding 99.9 8.1E-23 1.8E-27 163.1 14.6 152 5-176 188-350 (351)
149 PF08477 Miro: Miro-like prote 99.9 6.3E-23 1.4E-27 140.2 11.8 114 8-121 1-119 (119)
150 PRK04213 GTP-binding protein; 99.9 2.9E-23 6.3E-28 154.6 10.9 157 4-181 7-195 (201)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.2E-22 4.7E-27 165.0 16.7 150 5-179 202-361 (442)
152 TIGR02729 Obg_CgtA Obg family 99.9 2.4E-22 5.3E-27 159.1 15.9 157 7-177 158-328 (329)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.4E-22 9.4E-27 142.0 15.8 145 7-177 2-156 (157)
154 cd01891 TypA_BipA TypA (tyrosi 99.9 2.2E-22 4.8E-27 149.0 14.2 147 7-167 3-171 (194)
155 PRK03003 GTP-binding protein D 99.9 1.9E-22 4E-27 167.6 14.7 153 6-179 38-200 (472)
156 cd01881 Obg_like The Obg-like 99.9 2.5E-22 5.3E-27 146.2 13.4 152 11-176 1-175 (176)
157 PRK05291 trmE tRNA modificatio 99.9 2.7E-22 5.8E-27 165.2 14.8 148 5-179 214-371 (449)
158 TIGR03594 GTPase_EngA ribosome 99.9 9.9E-22 2.1E-26 162.1 18.2 159 5-180 171-346 (429)
159 PF02421 FeoB_N: Ferrous iron 99.9 2.7E-22 5.9E-27 141.4 12.1 147 7-173 1-156 (156)
160 cd00881 GTP_translation_factor 99.9 6.7E-22 1.4E-26 145.4 14.5 157 8-178 1-187 (189)
161 cd04163 Era Era subfamily. Er 99.9 9.4E-22 2E-26 141.4 14.8 156 6-177 3-168 (168)
162 TIGR01393 lepA GTP-binding pro 99.9 7.4E-22 1.6E-26 167.1 15.8 158 7-180 4-182 (595)
163 cd01895 EngA2 EngA2 subfamily. 99.9 3.6E-21 7.9E-26 139.4 17.4 155 6-176 2-173 (174)
164 TIGR00487 IF-2 translation ini 99.9 2.8E-21 6.1E-26 162.9 17.7 154 4-175 85-247 (587)
165 PRK15467 ethanolamine utilizat 99.9 1.5E-21 3.2E-26 139.9 13.1 141 8-179 3-148 (158)
166 cd04105 SR_beta Signal recogni 99.9 2.6E-21 5.7E-26 144.0 14.3 118 8-125 2-124 (203)
167 KOG1673 Ras GTPases [General f 99.9 2E-21 4.4E-26 132.8 12.2 170 4-181 18-189 (205)
168 cd01889 SelB_euk SelB subfamil 99.9 1.3E-21 2.9E-26 144.6 12.1 162 7-180 1-188 (192)
169 PRK00089 era GTPase Era; Revie 99.9 6.9E-21 1.5E-25 149.5 16.4 161 5-181 4-174 (292)
170 PRK12297 obgE GTPase CgtA; Rev 99.9 1.1E-20 2.4E-25 153.4 17.7 157 8-181 160-330 (424)
171 PRK00093 GTP-binding protein D 99.9 4.4E-21 9.5E-26 158.5 15.1 150 7-177 2-161 (435)
172 COG1159 Era GTPase [General fu 99.9 6.2E-21 1.3E-25 144.7 14.2 165 3-183 3-177 (298)
173 PRK00454 engB GTP-binding prot 99.9 7.8E-21 1.7E-25 140.8 14.5 161 3-178 21-194 (196)
174 PRK11058 GTPase HflX; Provisio 99.9 1.1E-20 2.4E-25 154.2 16.4 156 7-179 198-363 (426)
175 CHL00189 infB translation init 99.9 5.3E-21 1.2E-25 163.6 15.1 157 4-177 242-409 (742)
176 KOG0071 GTP-binding ADP-ribosy 99.9 1.4E-20 3.1E-25 126.4 13.7 159 4-178 15-178 (180)
177 TIGR03594 GTPase_EngA ribosome 99.9 6.1E-21 1.3E-25 157.4 14.4 151 8-179 1-161 (429)
178 PRK05306 infB translation init 99.9 2.2E-20 4.7E-25 161.2 17.6 159 4-176 288-450 (787)
179 TIGR03598 GTPase_YsxC ribosome 99.9 5.4E-21 1.2E-25 139.8 11.5 152 1-167 13-179 (179)
180 PRK00093 GTP-binding protein D 99.9 2.2E-20 4.8E-25 154.3 16.4 161 5-179 172-345 (435)
181 PF00009 GTP_EFTU: Elongation 99.9 1.7E-20 3.6E-25 138.3 13.9 161 5-177 2-186 (188)
182 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4.2E-21 9.1E-26 135.4 10.0 162 6-181 10-172 (216)
183 PRK12296 obgE GTPase CgtA; Rev 99.9 2.9E-20 6.3E-25 152.8 16.4 160 7-181 160-343 (500)
184 cd01888 eIF2_gamma eIF2-gamma 99.9 1.5E-20 3.3E-25 140.1 12.7 116 54-180 83-201 (203)
185 PRK09518 bifunctional cytidyla 99.9 1.2E-20 2.7E-25 163.5 14.0 157 5-179 449-622 (712)
186 TIGR00475 selB selenocysteine- 99.8 5.2E-20 1.1E-24 155.8 15.4 156 7-179 1-167 (581)
187 PRK05433 GTP-binding protein L 99.8 6E-20 1.3E-24 155.7 15.7 161 4-180 5-186 (600)
188 PRK12298 obgE GTPase CgtA; Rev 99.8 9.1E-20 2E-24 147.3 15.9 160 8-180 161-335 (390)
189 PRK09518 bifunctional cytidyla 99.8 9.4E-20 2E-24 158.1 16.4 154 5-179 274-437 (712)
190 KOG4423 GTP-binding protein-li 99.8 7E-23 1.5E-27 143.9 -2.6 169 4-182 23-198 (229)
191 KOG0076 GTP-binding ADP-ribosy 99.8 5.2E-21 1.1E-25 133.1 6.6 165 1-180 12-189 (197)
192 cd01896 DRG The developmentall 99.8 3.1E-19 6.7E-24 135.4 16.8 149 8-177 2-225 (233)
193 TIGR00437 feoB ferrous iron tr 99.8 1E-19 2.2E-24 154.2 15.7 145 13-177 1-154 (591)
194 COG1160 Predicted GTPases [Gen 99.8 4.9E-20 1.1E-24 147.1 12.6 151 7-178 4-165 (444)
195 PRK12317 elongation factor 1-a 99.8 1E-19 2.2E-24 149.8 14.9 159 1-170 1-197 (425)
196 cd00880 Era_like Era (E. coli 99.8 1.1E-19 2.4E-24 129.4 13.2 151 11-176 1-162 (163)
197 COG2229 Predicted GTPase [Gene 99.8 4.3E-19 9.3E-24 125.2 14.8 158 2-176 6-176 (187)
198 PF10662 PduV-EutP: Ethanolami 99.8 5E-20 1.1E-24 127.1 9.6 136 8-174 3-142 (143)
199 TIGR00491 aIF-2 translation in 99.8 2.1E-19 4.5E-24 151.5 15.3 166 5-177 3-215 (590)
200 PRK09554 feoB ferrous iron tra 99.8 8.1E-19 1.8E-23 152.1 18.5 152 6-177 3-167 (772)
201 COG1160 Predicted GTPases [Gen 99.8 8.4E-19 1.8E-23 140.1 16.4 161 5-181 177-354 (444)
202 COG0486 ThdF Predicted GTPase 99.8 4.3E-19 9.2E-24 142.1 14.0 152 6-180 217-378 (454)
203 KOG0074 GTP-binding ADP-ribosy 99.8 3.2E-19 7E-24 120.2 10.9 155 4-176 15-177 (185)
204 TIGR00483 EF-1_alpha translati 99.8 4.9E-19 1.1E-23 145.7 13.6 159 3-170 4-199 (426)
205 PRK10218 GTP-binding protein; 99.8 3E-18 6.5E-23 144.9 15.7 164 5-181 4-198 (607)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 1.5E-18 3.3E-23 146.8 13.2 160 8-180 3-193 (594)
207 PRK04004 translation initiatio 99.8 5.9E-18 1.3E-22 143.2 15.5 166 4-176 4-216 (586)
208 cd04168 TetM_like Tet(M)-like 99.8 4.2E-18 9.1E-23 129.4 13.2 167 8-178 1-235 (237)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.8E-18 1E-22 125.4 12.9 148 6-166 2-171 (195)
210 cd04167 Snu114p Snu114p subfam 99.8 1.9E-18 4.2E-23 129.7 10.8 112 8-123 2-136 (213)
211 KOG0072 GTP-binding ADP-ribosy 99.8 4.4E-19 9.6E-24 119.9 6.3 159 4-179 16-180 (182)
212 cd01876 YihA_EngB The YihA (En 99.8 4.2E-18 9.2E-23 122.6 11.8 154 8-176 1-169 (170)
213 PRK10512 selenocysteinyl-tRNA- 99.8 8E-18 1.7E-22 143.1 14.9 158 8-179 2-167 (614)
214 TIGR03680 eif2g_arch translati 99.8 3.1E-18 6.7E-23 139.9 12.0 163 4-178 2-196 (406)
215 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.6E-18 7.7E-23 127.7 11.4 151 8-169 1-185 (208)
216 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.1E-17 4.6E-22 124.5 15.2 154 8-175 1-220 (224)
217 KOG1423 Ras-like GTPase ERA [C 99.8 5.8E-18 1.3E-22 128.4 11.6 172 4-181 70-274 (379)
218 PRK04000 translation initiatio 99.8 7.8E-18 1.7E-22 137.5 12.8 166 2-179 5-202 (411)
219 KOG1707 Predicted Ras related/ 99.8 2.9E-18 6.3E-23 139.6 8.5 164 5-180 8-177 (625)
220 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.1E-17 2.3E-22 125.7 11.0 168 8-181 1-179 (232)
221 PRK12736 elongation factor Tu; 99.7 3.4E-17 7.4E-22 133.3 14.0 163 3-178 9-201 (394)
222 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-17 2.5E-22 125.9 9.9 151 8-167 1-194 (219)
223 cd04104 p47_IIGP_like p47 (47- 99.7 6.4E-17 1.4E-21 120.0 12.9 171 6-182 1-188 (197)
224 PRK12735 elongation factor Tu; 99.7 7.1E-17 1.5E-21 131.5 13.8 162 4-178 10-203 (396)
225 TIGR00485 EF-Tu translation el 99.7 6.3E-17 1.4E-21 131.9 13.3 149 3-164 9-179 (394)
226 cd01885 EF2 EF2 (for archaea a 99.7 7.8E-17 1.7E-21 121.0 12.8 112 8-123 2-138 (222)
227 COG0370 FeoB Fe2+ transport sy 99.7 3.2E-16 7E-21 130.7 16.2 156 6-181 3-167 (653)
228 CHL00071 tufA elongation facto 99.7 1.4E-16 3E-21 130.3 12.9 150 3-165 9-180 (409)
229 KOG1489 Predicted GTP-binding 99.7 8.9E-16 1.9E-20 117.1 14.2 154 8-176 198-365 (366)
230 cd04169 RF3 RF3 subfamily. Pe 99.7 4.2E-16 9.1E-21 120.4 12.3 115 7-125 3-138 (267)
231 PF09439 SRPRB: Signal recogni 99.7 4.7E-17 1E-21 117.3 6.1 120 5-126 2-128 (181)
232 COG0532 InfB Translation initi 99.7 1.2E-15 2.7E-20 124.0 14.8 159 4-180 3-172 (509)
233 KOG0462 Elongation factor-type 99.7 9.5E-16 2.1E-20 124.3 13.9 164 4-181 58-238 (650)
234 COG2262 HflX GTPases [General 99.7 1.1E-15 2.3E-20 120.7 13.6 158 4-180 190-358 (411)
235 PRK00741 prfC peptide chain re 99.7 1.2E-15 2.5E-20 127.8 13.9 116 5-124 9-145 (526)
236 PRK00049 elongation factor Tu; 99.7 1.6E-15 3.5E-20 123.5 13.9 161 4-177 10-202 (396)
237 PRK13351 elongation factor G; 99.7 7.7E-16 1.7E-20 133.7 12.5 116 3-124 5-139 (687)
238 cd01886 EF-G Elongation factor 99.7 9.1E-16 2E-20 118.7 11.6 111 8-124 1-130 (270)
239 COG1084 Predicted GTPase [Gene 99.7 2E-15 4.3E-20 116.0 13.1 159 5-179 167-337 (346)
240 PLN03127 Elongation factor Tu; 99.7 2.8E-15 6.1E-20 123.4 14.9 162 4-178 59-252 (447)
241 PLN00043 elongation factor 1-a 99.7 1.6E-15 3.5E-20 124.9 13.1 158 3-168 4-203 (447)
242 cd01850 CDC_Septin CDC/Septin. 99.7 5.8E-15 1.3E-19 114.6 15.1 143 5-161 3-185 (276)
243 PLN03126 Elongation factor Tu; 99.7 2.1E-15 4.5E-20 124.9 13.4 149 4-165 79-249 (478)
244 COG1163 DRG Predicted GTPase [ 99.7 1.4E-14 3.1E-19 111.1 16.3 153 4-179 61-290 (365)
245 cd01899 Ygr210 Ygr210 subfamil 99.6 9.1E-15 2E-19 115.2 15.2 80 9-88 1-110 (318)
246 PRK05124 cysN sulfate adenylyl 99.6 2E-15 4.3E-20 125.3 11.9 156 3-169 24-216 (474)
247 TIGR02034 CysN sulfate adenyly 99.6 1.6E-15 3.4E-20 124.0 10.7 151 7-168 1-187 (406)
248 PF01926 MMR_HSR1: 50S ribosom 99.6 5.6E-15 1.2E-19 100.3 11.1 105 8-119 1-116 (116)
249 COG3596 Predicted GTPase [Gene 99.6 1.9E-15 4.1E-20 113.6 9.2 174 3-180 36-224 (296)
250 PTZ00141 elongation factor 1- 99.6 4.4E-15 9.5E-20 122.4 12.2 156 3-168 4-203 (446)
251 COG0218 Predicted GTPase [Gene 99.6 1.2E-14 2.5E-19 105.1 12.4 160 2-179 20-198 (200)
252 cd04170 EF-G_bact Elongation f 99.6 9.3E-15 2E-19 113.4 12.9 112 8-125 1-131 (268)
253 PTZ00327 eukaryotic translatio 99.6 6.5E-15 1.4E-19 121.2 12.2 167 2-179 30-234 (460)
254 PRK05506 bifunctional sulfate 99.6 3.9E-15 8.6E-20 128.0 11.5 154 4-168 22-211 (632)
255 KOG0077 Vesicle coat complex C 99.6 2.5E-15 5.3E-20 104.2 7.4 154 5-177 19-192 (193)
256 COG0536 Obg Predicted GTPase [ 99.6 4.1E-14 8.9E-19 109.3 14.2 162 8-181 161-336 (369)
257 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 8.6E-14 1.9E-18 103.2 14.3 163 7-179 1-185 (196)
258 COG4917 EutP Ethanolamine util 99.6 3.2E-15 6.9E-20 99.0 5.7 137 8-175 3-143 (148)
259 TIGR00484 EF-G translation elo 99.6 3.4E-14 7.4E-19 123.3 13.8 114 6-125 10-142 (689)
260 KOG1145 Mitochondrial translat 99.6 6.8E-14 1.5E-18 113.8 14.3 157 4-180 151-318 (683)
261 KOG0090 Signal recognition par 99.6 2E-14 4.4E-19 103.9 9.8 168 4-176 36-237 (238)
262 COG0481 LepA Membrane GTPase L 99.6 1E-13 2.2E-18 111.1 14.3 160 6-181 9-189 (603)
263 PRK12739 elongation factor G; 99.6 9.3E-14 2E-18 120.6 15.3 115 4-124 6-139 (691)
264 KOG1191 Mitochondrial GTPase [ 99.6 2.9E-14 6.3E-19 114.6 10.5 163 5-180 267-452 (531)
265 cd00066 G-alpha G protein alph 99.6 8E-14 1.7E-18 110.4 12.8 128 53-180 160-313 (317)
266 COG5256 TEF1 Translation elong 99.5 4.5E-14 9.8E-19 111.6 10.5 159 2-169 3-202 (428)
267 TIGR00503 prfC peptide chain r 99.5 7.7E-14 1.7E-18 117.0 12.3 116 5-124 10-146 (527)
268 PRK09602 translation-associate 99.5 3.8E-13 8.2E-18 109.1 14.3 82 7-88 2-113 (396)
269 PRK09866 hypothetical protein; 99.5 5.9E-13 1.3E-17 111.3 15.6 112 54-177 230-352 (741)
270 PRK12740 elongation factor G; 99.5 3.2E-13 6.9E-18 117.2 14.1 107 12-124 1-126 (668)
271 PRK00007 elongation factor G; 99.5 7.4E-13 1.6E-17 115.0 13.5 115 5-125 9-142 (693)
272 TIGR00157 ribosome small subun 99.5 1.6E-12 3.4E-17 99.4 13.2 96 65-175 24-120 (245)
273 smart00275 G_alpha G protein a 99.5 5.5E-13 1.2E-17 106.5 10.5 127 54-181 184-337 (342)
274 PRK14845 translation initiatio 99.5 9.2E-13 2E-17 116.9 12.8 153 17-176 472-671 (1049)
275 smart00010 small_GTPase Small 99.4 5E-13 1.1E-17 91.5 8.1 113 7-167 1-115 (124)
276 KOG3905 Dynein light intermedi 99.4 2.3E-12 5E-17 99.0 12.3 177 7-184 53-296 (473)
277 KOG1490 GTP-binding protein CR 99.4 2.3E-13 5E-18 109.7 6.9 170 5-187 167-350 (620)
278 COG1217 TypA Predicted membran 99.4 3.8E-12 8.3E-17 102.0 13.3 162 7-181 6-198 (603)
279 TIGR00490 aEF-2 translation el 99.4 6.8E-13 1.5E-17 115.6 9.4 116 5-124 18-152 (720)
280 PRK13768 GTPase; Provisional 99.4 1.5E-12 3.2E-17 100.0 9.3 123 55-178 98-247 (253)
281 COG2895 CysN GTPases - Sulfate 99.4 3.1E-12 6.7E-17 99.3 10.9 155 2-167 2-192 (431)
282 TIGR00991 3a0901s02IAP34 GTP-b 99.4 7.1E-12 1.5E-16 97.4 12.8 119 4-125 36-168 (313)
283 TIGR00101 ureG urease accessor 99.4 8.3E-12 1.8E-16 92.5 12.6 102 54-178 92-196 (199)
284 KOG1144 Translation initiation 99.4 7.7E-13 1.7E-17 110.9 7.7 171 5-186 474-695 (1064)
285 KOG3887 Predicted small GTPase 99.4 1.3E-12 2.8E-17 96.5 7.3 175 7-185 28-209 (347)
286 cd01853 Toc34_like Toc34-like 99.4 5.5E-12 1.2E-16 96.4 10.8 119 4-126 29-165 (249)
287 KOG1532 GTPase XAB1, interacts 99.4 4E-12 8.6E-17 95.7 9.4 131 54-186 116-272 (366)
288 KOG0461 Selenocysteine-specifi 99.4 1.5E-11 3.3E-16 95.4 12.6 170 2-182 3-197 (522)
289 PF05783 DLIC: Dynein light in 99.4 2.5E-11 5.5E-16 100.0 14.4 173 7-183 26-269 (472)
290 KOG0082 G-protein alpha subuni 99.3 8.6E-12 1.9E-16 98.2 9.5 130 54-184 195-350 (354)
291 PRK07560 elongation factor EF- 99.3 2.1E-11 4.6E-16 106.6 12.6 116 5-124 19-153 (731)
292 KOG1707 Predicted Ras related/ 99.3 8.4E-11 1.8E-15 96.7 15.0 163 4-181 423-586 (625)
293 PF03029 ATP_bind_1: Conserved 99.3 6E-13 1.3E-17 101.1 2.2 120 55-177 92-236 (238)
294 PF04548 AIG1: AIG1 family; I 99.3 3.3E-11 7.2E-16 90.3 11.5 163 7-181 1-189 (212)
295 PTZ00258 GTP-binding protein; 99.3 7.7E-11 1.7E-15 95.0 14.2 84 4-87 19-125 (390)
296 KOG0705 GTPase-activating prot 99.3 4.2E-12 9E-17 103.4 7.0 161 5-180 29-191 (749)
297 PRK09435 membrane ATPase/prote 99.3 2.9E-11 6.3E-16 95.7 11.6 106 54-178 149-260 (332)
298 PLN00116 translation elongatio 99.3 6E-12 1.3E-16 111.3 8.3 116 4-123 17-163 (843)
299 TIGR02836 spore_IV_A stage IV 99.3 1.4E-10 2.9E-15 92.9 15.0 143 5-162 16-219 (492)
300 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.9E-11 1.1E-15 90.2 12.0 142 5-164 38-182 (225)
301 TIGR00073 hypB hydrogenase acc 99.3 4.9E-11 1.1E-15 89.1 11.4 153 3-176 19-205 (207)
302 PTZ00416 elongation factor 2; 99.3 1.8E-11 4E-16 108.1 9.8 115 5-123 18-157 (836)
303 PF05049 IIGP: Interferon-indu 99.3 2.1E-11 4.6E-16 97.2 8.2 170 5-182 34-222 (376)
304 PRK09601 GTP-binding protein Y 99.2 6.8E-10 1.5E-14 88.6 15.2 82 7-88 3-107 (364)
305 PF00735 Septin: Septin; Inte 99.2 6E-10 1.3E-14 86.7 14.6 115 5-124 3-156 (281)
306 PF00350 Dynamin_N: Dynamin fa 99.2 7E-11 1.5E-15 85.3 8.2 63 55-120 102-168 (168)
307 COG0378 HypB Ni2+-binding GTPa 99.2 3.3E-10 7.2E-15 81.6 10.3 103 54-177 97-200 (202)
308 KOG1486 GTP-binding protein DR 99.2 4.4E-09 9.5E-14 78.6 15.2 157 3-179 59-289 (364)
309 KOG3886 GTP-binding protein [S 99.1 3.1E-10 6.8E-15 83.5 8.8 118 6-125 4-131 (295)
310 KOG0458 Elongation factor 1 al 99.1 1.3E-09 2.8E-14 89.8 13.2 159 4-169 175-373 (603)
311 COG4108 PrfC Peptide chain rel 99.1 8.7E-10 1.9E-14 88.1 11.1 113 7-123 13-146 (528)
312 KOG0468 U5 snRNP-specific prot 99.1 2E-10 4.3E-15 95.8 7.7 116 3-122 125-261 (971)
313 COG0480 FusA Translation elong 99.1 2.9E-10 6.2E-15 97.7 9.0 116 3-123 7-141 (697)
314 TIGR00750 lao LAO/AO transport 99.1 6.3E-10 1.4E-14 87.7 9.8 108 53-178 126-238 (300)
315 COG5257 GCD11 Translation init 99.1 3.9E-10 8.5E-15 86.8 8.2 165 4-182 8-206 (415)
316 PF00503 G-alpha: G-protein al 99.1 2.4E-09 5.2E-14 87.5 13.1 123 54-177 236-389 (389)
317 COG3276 SelB Selenocysteine-sp 99.1 1.5E-09 3.2E-14 87.0 10.9 155 8-178 2-162 (447)
318 COG0050 TufB GTPases - transla 99.0 2.2E-09 4.8E-14 81.8 9.5 165 4-181 10-204 (394)
319 cd01855 YqeH YqeH. YqeH is an 99.0 1.1E-09 2.3E-14 80.8 7.4 94 67-177 24-124 (190)
320 PRK00098 GTPase RsgA; Reviewed 99.0 9.3E-09 2E-13 81.0 12.6 88 74-175 77-164 (298)
321 PRK10463 hydrogenase nickel in 99.0 2.1E-09 4.6E-14 83.2 8.7 151 4-176 102-287 (290)
322 TIGR00993 3a0901s04IAP86 chlor 99.0 8E-09 1.7E-13 87.3 11.7 116 5-125 117-251 (763)
323 COG0012 Predicted GTPase, prob 99.0 3.5E-08 7.6E-13 78.1 14.3 83 6-88 2-108 (372)
324 smart00053 DYNc Dynamin, GTPas 99.0 4.8E-09 1E-13 79.6 9.2 69 54-125 125-207 (240)
325 PF03308 ArgK: ArgK protein; 98.9 5E-10 1.1E-14 84.5 3.1 153 5-179 28-231 (266)
326 cd01854 YjeQ_engC YjeQ/EngC. 98.9 2.7E-08 5.8E-13 78.0 12.8 87 73-175 74-161 (287)
327 cd01859 MJ1464 MJ1464. This f 98.9 2.5E-09 5.5E-14 76.3 6.5 92 70-178 5-96 (156)
328 COG1703 ArgK Putative periplas 98.9 2.6E-08 5.6E-13 76.4 10.6 154 5-179 50-255 (323)
329 PRK12289 GTPase RsgA; Reviewed 98.9 2.1E-08 4.5E-13 80.4 10.2 92 70-177 82-174 (352)
330 KOG1143 Predicted translation 98.9 2.5E-08 5.4E-13 78.6 10.1 163 6-172 167-382 (591)
331 cd01900 YchF YchF subfamily. 98.8 7.7E-09 1.7E-13 80.0 6.7 79 9-87 1-102 (274)
332 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.5E-13 71.7 6.5 54 8-64 85-138 (141)
333 PRK12288 GTPase RsgA; Reviewed 98.8 3.7E-08 8E-13 78.9 9.6 89 75-176 118-206 (347)
334 TIGR03597 GTPase_YqeH ribosome 98.8 1.4E-08 3E-13 82.0 7.0 96 64-176 50-151 (360)
335 COG5258 GTPBP1 GTPase [General 98.8 1.1E-08 2.4E-13 80.8 6.0 166 4-173 115-334 (527)
336 KOG1547 Septin CDC10 and relat 98.8 4.4E-08 9.6E-13 72.8 8.7 118 1-122 41-196 (336)
337 COG5019 CDC3 Septin family pro 98.8 2.7E-07 5.8E-12 72.8 13.2 117 4-124 21-176 (373)
338 KOG2655 Septin family protein 98.8 2.1E-07 4.6E-12 73.7 12.6 115 5-124 20-172 (366)
339 KOG0410 Predicted GTP binding 98.8 1.6E-08 3.4E-13 78.2 5.9 149 6-179 178-342 (410)
340 cd01858 NGP_1 NGP-1. Autoanti 98.8 4.7E-08 1E-12 69.8 7.9 90 74-177 5-94 (157)
341 KOG0460 Mitochondrial translat 98.7 1E-07 2.3E-12 74.2 9.6 167 3-181 51-248 (449)
342 cd04178 Nucleostemin_like Nucl 98.7 5.7E-08 1.2E-12 70.3 6.9 53 6-63 117-171 (172)
343 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.2E-08 1.6E-12 68.9 7.1 54 5-63 101-156 (157)
344 KOG1954 Endocytosis/signaling 98.7 7.6E-08 1.6E-12 75.8 7.1 118 6-126 58-227 (532)
345 KOG0463 GTP-binding protein GP 98.6 4E-07 8.7E-12 72.0 10.0 152 6-172 133-352 (641)
346 cd01849 YlqF_related_GTPase Yl 98.6 3.4E-07 7.4E-12 65.2 8.9 84 79-178 1-85 (155)
347 KOG0448 Mitofusin 1 GTPase, in 98.6 6.1E-07 1.3E-11 75.7 11.4 118 5-126 108-277 (749)
348 cd01856 YlqF YlqF. Proteins o 98.6 1.6E-07 3.4E-12 68.1 6.9 55 5-64 114-170 (171)
349 TIGR03596 GTPase_YlqF ribosome 98.6 2.4E-07 5.1E-12 72.3 7.6 55 5-64 117-173 (276)
350 PF09547 Spore_IV_A: Stage IV 98.6 6.4E-06 1.4E-10 66.5 15.6 142 6-162 17-219 (492)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3E-07 6.4E-12 64.5 6.6 77 74-165 8-84 (141)
352 KOG2486 Predicted GTPase [Gene 98.5 7.8E-08 1.7E-12 73.0 3.8 164 4-176 134-314 (320)
353 KOG0085 G protein subunit Galp 98.5 9.5E-08 2.1E-12 70.7 4.0 129 52-181 197-352 (359)
354 KOG0467 Translation elongation 98.5 3.6E-07 7.9E-12 77.8 8.0 114 4-121 7-135 (887)
355 cd01859 MJ1464 MJ1464. This f 98.5 4E-07 8.8E-12 64.9 7.2 55 5-63 100-155 (156)
356 PRK09563 rbgA GTPase YlqF; Rev 98.5 4.9E-07 1.1E-11 70.9 8.1 56 5-65 120-177 (287)
357 KOG1487 GTP-binding protein DR 98.5 1.4E-06 3E-11 65.7 9.5 88 7-96 60-155 (358)
358 TIGR00092 GTP-binding protein 98.5 8E-07 1.7E-11 71.3 8.4 82 7-88 3-108 (368)
359 COG1161 Predicted GTPases [Gen 98.5 4.6E-07 9.9E-12 72.1 6.7 57 5-64 131-187 (322)
360 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.4E-11 63.6 7.8 87 72-177 14-100 (171)
361 cd01855 YqeH YqeH. YqeH is an 98.4 5.2E-07 1.1E-11 66.5 5.8 25 6-30 127-151 (190)
362 cd01849 YlqF_related_GTPase Yl 98.4 1.1E-06 2.4E-11 62.6 6.9 54 5-63 99-154 (155)
363 COG1618 Predicted nucleotide k 98.4 1.7E-05 3.8E-10 55.8 12.5 146 5-178 4-176 (179)
364 KOG0466 Translation initiation 98.4 4.6E-07 9.9E-12 69.8 4.3 170 1-184 33-247 (466)
365 KOG1491 Predicted GTP-binding 98.4 1.7E-06 3.7E-11 67.5 7.5 85 4-88 18-125 (391)
366 PRK13796 GTPase YqeH; Provisio 98.4 3.4E-06 7.5E-11 68.3 9.4 84 76-176 67-157 (365)
367 PF03193 DUF258: Protein of un 98.3 5.7E-07 1.2E-11 63.9 4.2 58 8-68 37-101 (161)
368 TIGR03596 GTPase_YlqF ribosome 98.3 3.8E-06 8.3E-11 65.6 8.6 88 72-178 16-103 (276)
369 cd01851 GBP Guanylate-binding 98.3 1.2E-05 2.6E-10 60.8 10.2 86 5-90 6-104 (224)
370 TIGR03348 VI_IcmF type VI secr 98.2 4.7E-06 1E-10 76.9 8.9 111 9-124 114-257 (1169)
371 PRK12288 GTPase RsgA; Reviewed 98.2 2E-06 4.4E-11 69.0 5.4 22 9-30 208-229 (347)
372 PRK09563 rbgA GTPase YlqF; Rev 98.2 8.7E-06 1.9E-10 63.9 8.2 88 72-178 19-106 (287)
373 PRK01889 GTPase RsgA; Reviewed 98.2 1.1E-05 2.3E-10 65.2 8.9 83 75-174 110-193 (356)
374 COG5192 BMS1 GTP-binding prote 98.2 1.4E-05 3.1E-10 66.5 9.6 111 5-126 68-179 (1077)
375 cd03112 CobW_like The function 98.2 7.8E-06 1.7E-10 58.4 7.2 64 54-122 87-158 (158)
376 KOG0099 G protein subunit Galp 98.2 7.8E-06 1.7E-10 61.8 7.1 71 54-124 202-283 (379)
377 PRK12289 GTPase RsgA; Reviewed 98.1 6.3E-06 1.4E-10 66.3 6.0 23 8-30 174-196 (352)
378 PRK10416 signal recognition pa 98.1 6.6E-05 1.4E-09 59.7 11.0 94 53-170 196-302 (318)
379 PRK14974 cell division protein 98.1 8.2E-06 1.8E-10 65.1 5.6 94 54-170 223-322 (336)
380 KOG0465 Mitochondrial elongati 98.1 1.3E-05 2.8E-10 67.1 6.9 113 7-123 40-169 (721)
381 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.3E-06 1.4E-10 64.7 4.9 24 7-30 162-185 (287)
382 KOG1424 Predicted GTP-binding 98.1 5.6E-06 1.2E-10 68.0 4.6 57 6-65 314-370 (562)
383 COG1162 Predicted GTPases [Gen 98.1 9.7E-06 2.1E-10 63.0 5.8 58 8-68 166-230 (301)
384 TIGR00157 ribosome small subun 98.0 1.4E-05 3E-10 61.3 6.1 23 8-30 122-144 (245)
385 TIGR00064 ftsY signal recognit 98.0 3E-05 6.5E-10 60.3 7.6 93 54-170 155-260 (272)
386 KOG0464 Elongation factor G [T 98.0 4.3E-06 9.3E-11 67.1 2.8 114 7-124 38-168 (753)
387 TIGR01425 SRP54_euk signal rec 98.0 6.3E-05 1.4E-09 61.8 9.5 66 53-124 182-253 (429)
388 PRK13796 GTPase YqeH; Provisio 98.0 1.4E-05 3.1E-10 64.8 5.4 54 7-65 161-221 (365)
389 TIGR03597 GTPase_YqeH ribosome 98.0 1.5E-05 3.3E-10 64.5 5.4 54 7-65 155-215 (360)
390 KOG1533 Predicted GTPase [Gene 97.9 1.7E-05 3.8E-10 59.0 5.1 120 54-176 97-251 (290)
391 KOG0447 Dynamin-like GTP bindi 97.9 8.8E-05 1.9E-09 61.8 9.4 81 56-148 414-507 (980)
392 KOG3859 Septins (P-loop GTPase 97.9 7.4E-05 1.6E-09 57.2 7.9 59 5-63 41-104 (406)
393 PF06858 NOG1: Nucleolar GTP-b 97.9 6.1E-05 1.3E-09 43.5 5.8 44 77-121 13-58 (58)
394 KOG0469 Elongation factor 2 [T 97.9 2.5E-05 5.3E-10 64.3 5.6 113 7-123 20-163 (842)
395 COG1162 Predicted GTPases [Gen 97.9 0.00019 4.2E-09 55.9 10.2 95 70-177 72-166 (301)
396 PRK00098 GTPase RsgA; Reviewed 97.9 2.3E-05 5E-10 61.8 5.2 23 8-30 166-188 (298)
397 PF11111 CENP-M: Centromere pr 97.8 0.0021 4.5E-08 46.0 13.9 143 1-177 10-152 (176)
398 KOG0459 Polypeptide release fa 97.8 7E-05 1.5E-09 60.0 6.8 165 3-171 76-279 (501)
399 PF03266 NTPase_1: NTPase; In 97.8 0.00023 4.9E-09 51.4 8.5 52 8-61 1-52 (168)
400 PF02492 cobW: CobW/HypB/UreG, 97.8 0.00012 2.6E-09 53.4 7.0 67 54-125 85-156 (178)
401 PRK14722 flhF flagellar biosyn 97.8 0.00027 5.8E-09 57.3 9.6 138 7-159 138-315 (374)
402 cd03114 ArgK-like The function 97.8 0.00021 4.6E-09 50.4 8.1 58 53-121 91-148 (148)
403 KOG4273 Uncharacterized conser 97.8 0.00093 2E-08 50.5 11.6 170 7-180 5-224 (418)
404 PRK13695 putative NTPase; Prov 97.7 0.0012 2.7E-08 47.8 11.9 22 7-28 1-22 (174)
405 COG0523 Putative GTPases (G3E 97.7 0.001 2.2E-08 53.0 12.0 99 54-170 85-193 (323)
406 PRK14721 flhF flagellar biosyn 97.7 0.00027 5.9E-09 58.1 9.0 102 54-179 270-383 (420)
407 COG1419 FlhF Flagellar GTP-bin 97.7 0.00056 1.2E-08 55.4 10.3 65 53-124 281-352 (407)
408 PRK12727 flagellar biosynthesi 97.7 0.0003 6.5E-09 59.2 8.5 90 53-166 428-523 (559)
409 PRK11537 putative GTP-binding 97.6 0.0011 2.5E-08 52.7 11.0 22 8-29 6-27 (318)
410 KOG2423 Nucleolar GTPase [Gene 97.6 2.9E-05 6.3E-10 62.1 1.8 59 2-63 303-361 (572)
411 COG3523 IcmF Type VI protein s 97.6 0.00014 3E-09 66.3 6.0 113 9-124 128-270 (1188)
412 KOG2484 GTPase [General functi 97.6 8.1E-05 1.8E-09 59.6 3.9 57 4-64 250-307 (435)
413 PRK14723 flhF flagellar biosyn 97.5 0.00086 1.9E-08 58.9 9.9 105 54-179 264-380 (767)
414 PRK00771 signal recognition pa 97.5 0.0002 4.3E-09 59.3 5.8 64 54-124 176-246 (437)
415 cd04178 Nucleostemin_like Nucl 97.5 0.00036 7.7E-09 50.6 6.1 45 79-125 1-45 (172)
416 COG3640 CooC CO dehydrogenase 97.5 0.00098 2.1E-08 50.0 8.2 47 74-123 152-198 (255)
417 cd02038 FleN-like FleN is a me 97.4 0.00066 1.4E-08 47.3 6.8 106 11-123 5-110 (139)
418 KOG2485 Conserved ATP/GTP bind 97.4 0.00036 7.7E-09 54.3 5.4 59 4-64 141-206 (335)
419 PRK08118 topology modulation p 97.4 0.00014 3.1E-09 52.4 3.1 22 8-29 3-24 (167)
420 COG0563 Adk Adenylate kinase a 97.4 0.00014 3.1E-09 52.9 3.1 23 7-29 1-23 (178)
421 PRK10867 signal recognition pa 97.4 0.0011 2.3E-08 54.9 8.5 86 54-160 184-275 (433)
422 PRK12723 flagellar biosynthesi 97.4 0.0019 4.1E-08 52.8 9.6 107 53-182 254-372 (388)
423 KOG1534 Putative transcription 97.4 0.00031 6.7E-09 51.7 4.5 69 110-178 164-251 (273)
424 PRK06995 flhF flagellar biosyn 97.4 0.0016 3.5E-08 54.5 9.2 21 8-28 258-278 (484)
425 PF13207 AAA_17: AAA domain; P 97.3 0.00017 3.7E-09 48.8 2.9 22 8-29 1-22 (121)
426 PRK07261 topology modulation p 97.3 0.00021 4.5E-09 51.7 3.1 22 8-29 2-23 (171)
427 TIGR00959 ffh signal recogniti 97.3 0.0013 2.7E-08 54.5 7.6 86 54-160 183-274 (428)
428 PF13671 AAA_33: AAA domain; P 97.3 0.00021 4.7E-09 49.8 2.8 21 9-29 2-22 (143)
429 TIGR00235 udk uridine kinase. 97.3 0.00035 7.6E-09 52.2 4.0 29 1-29 1-29 (207)
430 cd00009 AAA The AAA+ (ATPases 97.2 0.0014 3.1E-08 45.2 6.7 26 6-31 19-44 (151)
431 PF13555 AAA_29: P-loop contai 97.2 0.00039 8.4E-09 41.1 3.1 21 8-28 25-45 (62)
432 PRK10751 molybdopterin-guanine 97.2 0.00043 9.2E-09 50.0 3.8 29 1-29 1-29 (173)
433 PRK05480 uridine/cytidine kina 97.2 0.00042 9.2E-09 51.8 3.9 29 1-29 1-29 (209)
434 COG1126 GlnQ ABC-type polar am 97.2 0.00033 7.2E-09 51.9 3.1 23 8-30 30-52 (240)
435 PF13521 AAA_28: AAA domain; P 97.2 0.00023 5E-09 51.0 2.1 22 8-29 1-22 (163)
436 PRK05703 flhF flagellar biosyn 97.1 0.0051 1.1E-07 51.0 10.0 89 54-166 300-396 (424)
437 cd02019 NK Nucleoside/nucleoti 97.1 0.00047 1E-08 41.9 3.0 21 9-29 2-22 (69)
438 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0041 8.9E-08 39.8 7.3 69 9-90 2-71 (99)
439 PTZ00088 adenylate kinase 1; P 97.1 0.00065 1.4E-08 51.5 3.6 28 1-28 1-28 (229)
440 TIGR02475 CobW cobalamin biosy 97.0 0.011 2.4E-07 47.7 10.7 21 9-29 7-27 (341)
441 PF00004 AAA: ATPase family as 97.0 0.00055 1.2E-08 46.8 3.0 22 9-30 1-22 (132)
442 cd02042 ParA ParA and ParB of 97.0 0.0028 6.1E-08 41.6 6.2 82 9-102 2-84 (104)
443 PRK14530 adenylate kinase; Pro 97.0 0.0007 1.5E-08 50.9 3.6 21 8-28 5-25 (215)
444 PRK14737 gmk guanylate kinase; 97.0 0.0008 1.7E-08 49.4 3.8 24 7-30 5-28 (186)
445 PF04665 Pox_A32: Poxvirus A32 97.0 0.00069 1.5E-08 51.5 3.3 25 5-29 12-36 (241)
446 COG1136 SalX ABC-type antimicr 97.0 0.00062 1.3E-08 51.2 3.0 22 8-29 33-54 (226)
447 PRK06217 hypothetical protein; 97.0 0.00068 1.5E-08 49.6 3.2 23 7-29 2-24 (183)
448 PRK14738 gmk guanylate kinase; 97.0 0.0011 2.4E-08 49.5 4.3 25 5-29 12-36 (206)
449 PRK14527 adenylate kinase; Pro 97.0 0.00089 1.9E-08 49.3 3.7 28 1-28 1-28 (191)
450 cd03110 Fer4_NifH_child This p 97.0 0.0058 1.3E-07 44.4 7.8 85 52-156 91-175 (179)
451 smart00382 AAA ATPases associa 97.0 0.00087 1.9E-08 45.9 3.3 26 7-32 3-28 (148)
452 PRK06731 flhF flagellar biosyn 96.9 0.011 2.4E-07 46.0 9.6 85 53-159 154-245 (270)
453 PF00005 ABC_tran: ABC transpo 96.9 0.00079 1.7E-08 46.6 2.9 23 8-30 13-35 (137)
454 COG1116 TauB ABC-type nitrate/ 96.9 0.0008 1.7E-08 50.9 3.1 21 9-29 32-52 (248)
455 PRK03839 putative kinase; Prov 96.9 0.00084 1.8E-08 48.9 3.1 22 8-29 2-23 (180)
456 PF13238 AAA_18: AAA domain; P 96.9 0.00083 1.8E-08 45.7 2.7 21 9-29 1-21 (129)
457 PF03205 MobB: Molybdopterin g 96.9 0.00098 2.1E-08 46.6 2.9 22 8-29 2-23 (140)
458 cd00071 GMPK Guanosine monopho 96.8 0.0011 2.3E-08 46.2 3.1 21 9-29 2-22 (137)
459 PRK10078 ribose 1,5-bisphospho 96.8 0.001 2.2E-08 48.8 3.1 23 8-30 4-26 (186)
460 TIGR02322 phosphon_PhnN phosph 96.8 0.0011 2.3E-08 48.3 3.0 22 8-29 3-24 (179)
461 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.3E-08 48.6 3.0 22 7-28 4-25 (188)
462 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0012 2.6E-08 43.7 2.9 20 8-27 17-36 (107)
463 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.5E-08 48.6 3.1 22 8-29 2-23 (188)
464 PRK00300 gmk guanylate kinase; 96.8 0.0015 3.2E-08 48.6 3.7 23 7-29 6-28 (205)
465 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 47.5 3.2 22 8-29 3-24 (169)
466 PRK01889 GTPase RsgA; Reviewed 96.8 0.0014 3E-08 53.1 3.7 24 7-30 196-219 (356)
467 TIGR02788 VirB11 P-type DNA tr 96.8 0.047 1E-06 43.4 12.2 25 6-30 144-168 (308)
468 COG1936 Predicted nucleotide k 96.8 0.0012 2.7E-08 47.1 2.9 21 7-27 1-21 (180)
469 PRK14531 adenylate kinase; Pro 96.8 0.0014 3E-08 48.0 3.2 23 7-29 3-25 (183)
470 TIGR03263 guanyl_kin guanylate 96.8 0.0013 2.9E-08 47.8 3.1 22 8-29 3-24 (180)
471 KOG3347 Predicted nucleotide k 96.8 0.001 2.2E-08 46.3 2.3 24 5-28 6-29 (176)
472 PF07728 AAA_5: AAA domain (dy 96.8 0.0011 2.5E-08 46.0 2.6 22 8-29 1-22 (139)
473 cd02023 UMPK Uridine monophosp 96.7 0.0014 3E-08 48.5 3.0 21 9-29 2-22 (198)
474 PRK08233 hypothetical protein; 96.7 0.0018 3.8E-08 47.1 3.5 24 6-29 3-26 (182)
475 cd01428 ADK Adenylate kinase ( 96.7 0.0013 2.8E-08 48.4 2.7 22 8-29 1-22 (194)
476 PRK02496 adk adenylate kinase; 96.7 0.0017 3.7E-08 47.5 3.3 22 7-28 2-23 (184)
477 PHA00729 NTP-binding motif con 96.7 0.0017 3.8E-08 48.8 3.4 25 5-29 16-40 (226)
478 cd01130 VirB11-like_ATPase Typ 96.7 0.0017 3.7E-08 47.6 3.3 24 7-30 26-49 (186)
479 TIGR01351 adk adenylate kinase 96.7 0.0014 3E-08 49.1 2.7 21 8-28 1-21 (210)
480 COG3638 ABC-type phosphate/pho 96.7 0.0016 3.4E-08 49.0 3.0 21 8-28 32-52 (258)
481 PLN02200 adenylate kinase fami 96.7 0.0023 5E-08 48.8 3.9 25 5-29 42-66 (234)
482 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0017 3.6E-08 47.4 3.0 21 9-29 2-22 (183)
483 COG1120 FepC ABC-type cobalami 96.7 0.0017 3.7E-08 49.9 3.0 21 9-29 31-51 (258)
484 cd03238 ABC_UvrA The excision 96.6 0.002 4.3E-08 46.9 3.3 20 8-27 23-42 (176)
485 cd01131 PilT Pilus retraction 96.6 0.0018 3.8E-08 48.1 3.0 22 9-30 4-25 (198)
486 PRK06547 hypothetical protein; 96.6 0.0024 5.1E-08 46.3 3.5 27 3-29 12-38 (172)
487 PRK13851 type IV secretion sys 96.6 0.011 2.3E-07 47.7 7.4 27 6-32 162-188 (344)
488 COG0194 Gmk Guanylate kinase [ 96.6 0.0015 3.3E-08 47.3 2.4 25 6-30 4-28 (191)
489 PRK05057 aroK shikimate kinase 96.6 0.0026 5.6E-08 46.1 3.6 23 7-29 5-27 (172)
490 PLN02674 adenylate kinase 96.6 0.0023 4.9E-08 48.9 3.4 24 5-28 30-53 (244)
491 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0028 6.1E-08 46.1 3.7 23 8-30 27-49 (177)
492 cd02025 PanK Pantothenate kina 96.6 0.0018 3.9E-08 48.9 2.8 21 9-29 2-22 (220)
493 PF05621 TniB: Bacterial TniB 96.6 0.0035 7.5E-08 49.1 4.4 26 5-30 60-85 (302)
494 PRK00625 shikimate kinase; Pro 96.6 0.0022 4.7E-08 46.5 3.1 21 8-28 2-22 (173)
495 COG3840 ThiQ ABC-type thiamine 96.6 0.0022 4.8E-08 46.4 3.0 22 8-29 27-48 (231)
496 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0023 5.1E-08 48.0 3.3 23 8-30 32-54 (218)
497 PRK13900 type IV secretion sys 96.6 0.0068 1.5E-07 48.7 6.0 28 6-33 160-187 (332)
498 PF13401 AAA_22: AAA domain; P 96.6 0.0019 4.1E-08 44.2 2.6 23 8-30 6-28 (131)
499 COG4962 CpaF Flp pilus assembl 96.5 0.0045 9.7E-08 49.2 4.8 25 7-31 174-198 (355)
500 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0022 4.8E-08 47.9 3.1 23 8-30 29-51 (211)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-41 Score=237.90 Aligned_cols=170 Identities=35% Similarity=0.671 Sum_probs=158.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
++.+||+|+|+.|+|||+|+.||.+..|++.+..|.+..+ .+++.++++.+.++||||+||++|+++...++++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 4678999999999999999999999999999999997666 578899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||+++.+||..+ ..|+.+++.+. +++|.++||||+|+.+.+. ++.++++.++..++...|+|+||+
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999 99999999988 6889999999999999876 999999999999999339999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhh
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
++.||++.|..|...+..+....
T Consensus 156 ~~~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred CccCHHHHHHHHHHHHHHhcccC
Confidence 99999999999999987654433
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-40 Score=231.60 Aligned_cols=171 Identities=32% Similarity=0.605 Sum_probs=157.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
....+||+++|+.++|||||+-|+..+.|.+...+|.+ ..+.+++.+++..++|.||||+|+++|.++-++++++|+++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35679999999999999999999999999998888886 44578899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
|+|||+++.+||..+ +.|+..+.+.. |++-+.+||||+||.+.+. +..++++.++++.+. .|+|+||
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSA 149 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSA 149 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEec
Confidence 999999999999999 99999999888 5777889999999998765 999999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchhhH
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPRRKE 185 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~~~~ 185 (211)
+++.||+++|..|.+.+........
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred ccccCHHHHHHHHHHhccCcccccc
Confidence 9999999999999999988655544
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.3e-38 Score=233.08 Aligned_cols=176 Identities=59% Similarity=1.003 Sum_probs=152.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
..+||+++|+.++|||||+.++..+.|++.+.+|.+..+...+.+++..+.+++|||+|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 35899999999999999999999999999999999887777778899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||+++++||+.+...|...+....+++|++|||||.|+.+..... ..+...+.++.+++.++++..+..+|+++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999446888887766799999999999996543210 111122347788999999999866999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
|.||+++|+++++.+..+
T Consensus 162 g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999988663
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5e-38 Score=228.59 Aligned_cols=173 Identities=91% Similarity=1.391 Sum_probs=152.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++++|||||+.++..+.|...+.+|.+..+...+.+++..+.+++|||+|+++|.+++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
+++++||+.+...|+..+....+++|++|||||+|+.+++.....+...+.++.+++.++++..+..+|+|+||++|.||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999985689999987777899999999999965431111112233488999999999998757999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028239 167 KAVFDTAIKVVLQ 179 (211)
Q Consensus 167 ~~lf~~l~~~~~~ 179 (211)
+++|+.+++.+.+
T Consensus 162 ~~~F~~~~~~~~~ 174 (176)
T cd04133 162 KAVFDAAIKVVLQ 174 (176)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.1e-39 Score=218.70 Aligned_cols=169 Identities=31% Similarity=0.617 Sum_probs=156.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..+||+++|++|+|||||+-+|..+.|.+..+.|.+..+ .+.+.+++..+++.||||+|+++|+.+++.+++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 569999999999999999999999999998888787555 5788999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++.+++|..+ ..|.+++.-+. +++-.++||||+|...++. ++.+++..|+++++. .|+|+||+
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk 157 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK 157 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence 9999999999999 99999999887 5777789999999876665 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhhH
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRKE 185 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~~ 185 (211)
+.+||...|++++.+|++.+.-.+
T Consensus 158 t~~~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 158 TRENVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred hhccHHHHHHHHHHHHhcCcchhh
Confidence 999999999999999998776555
No 6
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.9e-38 Score=230.46 Aligned_cols=176 Identities=39% Similarity=0.712 Sum_probs=154.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+...+||+++|++++|||||+.++..+.+...+.+|.+..+...+.+++..+.+++|||+|++.|..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45679999999999999999999999999999999998888778889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++.||+.+...|+..+....++.|++|||||+|+.+..... ......+.++.+++++++++.++.+|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997679999998887899999999999986421100 0011123589999999999999669999999
Q ss_pred CCCCC-HHHHHHHHHHHHc
Q 028239 161 KTQQN-VKAVFDTAIKVVL 178 (211)
Q Consensus 161 ~~~~~-v~~lf~~l~~~~~ 178 (211)
++|.| |+++|..+++.++
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999998754
No 7
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-38 Score=237.87 Aligned_cols=177 Identities=36% Similarity=0.649 Sum_probs=154.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
...+||+++|++++|||+|+.+|..+.|...+.+|.+..+...+.+++..+.++||||+|++.|..+++.+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35789999999999999999999999999999999988887778889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc--cccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++++|+.+...|+..+....++.|+++||||+|+........ .....+.++.+++++++++.++.+|+||||+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999999999854899999988778899999999999864311110 0111245889999999999997579999999
Q ss_pred CCC-CHHHHHHHHHHHHcCC
Q 028239 162 TQQ-NVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~-~v~~lf~~l~~~~~~~ 180 (211)
+|. ||+++|..+++.+++.
T Consensus 171 tg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 171 TSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCHHHHHHHHHHHHHHh
Confidence 998 8999999999988764
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=222.58 Aligned_cols=171 Identities=33% Similarity=0.578 Sum_probs=157.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
...+||.++|++|+|||||++++..++|...+..|.+..+ .+.+.++++.+.+++|||+|+++|+++...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 5679999999999999999999999999999999997555 688999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
+|||++++.||+.+ ..|.+++.... ..-|+||+|||.|+.... .++++.+.+++|+++.+..||||
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEE
Confidence 99999999999999 99999998766 257999999999997642 23599999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcCCchh
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~~~~~ 183 (211)
+||++..||+++|..+.+.++.....
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ecccccccHHHHHHHHHHHHHhccch
Confidence 99999999999999999999988764
No 9
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-39 Score=224.55 Aligned_cols=175 Identities=30% Similarity=0.569 Sum_probs=163.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGAD 79 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 79 (211)
|+....+|++++|+.|+|||+|+.+|..+.|.+.++.|.+..+ ...+.++++.+++++|||+|+++|++.+..+++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 7888999999999999999999999999999999999997666 577899999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 80 IFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
++|+|||++..+||..+ ..|+..+++.. +|..++|+|||+||...+. |+.+|++.|+++.+. .|+++
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence 99999999999999999 99999999886 8999999999999998776 999999999999888 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCchhhHHH
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQPPRRKEMM 187 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~~~~~~~~ 187 (211)
||++++||+++|..+...|+...+.+-..
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKIQDGVFD 177 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999998866655543
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.1e-38 Score=230.51 Aligned_cols=168 Identities=27% Similarity=0.493 Sum_probs=151.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.+..+||+++|..|+|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999988888877765444 45677889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|+|||++++.+|+.+ ..|++.+....++.|+||||||.|+...+. ++.++++.+++..+. +|+++||+
T Consensus 83 llVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk 150 (189)
T cd04121 83 ILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPL 150 (189)
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCC
Confidence 999999999999999 899999988778999999999999976554 888999999999987 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 028239 162 TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~ 182 (211)
+|.||+++|+++++.+..+..
T Consensus 151 ~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 151 CNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999998876444
No 11
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-37 Score=225.86 Aligned_cols=173 Identities=38% Similarity=0.706 Sum_probs=150.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|++|+|||||+++|..+.++..+.+|.+..+...+.+++..+.+++|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999998888778888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|+++++||+.+...|+..+.+..++.|+++||||+|+.++.... ......+.++.+++.++++..+..+|+|+||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999996579999998888899999999999996421100 0001123488999999999999768999999999
Q ss_pred CC-HHHHHHHHHHHHc
Q 028239 164 QN-VKAVFDTAIKVVL 178 (211)
Q Consensus 164 ~~-v~~lf~~l~~~~~ 178 (211)
++ |+++|..+++..+
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999999654
No 12
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-38 Score=224.51 Aligned_cols=171 Identities=32% Similarity=0.626 Sum_probs=158.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+.++.+||+++|+++||||+|+.+|..+.|...+..|.+..+ .+++..++..+.+++|||+||++|+.+...+++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 346789999999999999999999999999999999997666 5788999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+++|||+++..||+++ ..|+..+.+.. +++|.++||||+|+...+. |+.+.+++++..++. +|+|+|
T Consensus 88 i~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtS 155 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETS 155 (207)
T ss_pred eEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcc
Confidence 9999999999999999 77999999998 5999999999999988665 999999999999998 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
|++|.||+++|..|.+.+..+....
T Consensus 156 Ak~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 156 AKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHhhcchh
Confidence 9999999999999999998754443
No 13
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-38 Score=220.23 Aligned_cols=166 Identities=35% Similarity=0.575 Sum_probs=154.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
+.+||+++|+.++||||||.||+.+.|...|..|.+..| ..++.+.+.++.|++|||+|||+|+++.+.++++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 458999999999999999999999999999999997655 6889999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-C-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-P-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||+++..||+.. .+|++.+.... . ++-+++||||.||.+.+. ++.+++...+++++. .|+++||+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak 168 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK 168 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence 9999999999999 99999998876 3 467789999999999875 999999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 028239 162 TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~ 182 (211)
.|.||..+|..|..++.....
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCCHHHHHHHHHHhccCccc
Confidence 999999999998888877654
No 14
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.6e-37 Score=231.82 Aligned_cols=175 Identities=38% Similarity=0.717 Sum_probs=152.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+|+|++|+|||||+.+|..+.|+..+.||....+...+.+++..+.|.||||+|++.|..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988887788899999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc--cccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
++++++|+.+...|...+....++.|++|||||+|+..+..... .......++.+++..+++.+++.+|+||||+++.
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999999997788888877778999999999999965421111 1111234788999999999997799999999988
Q ss_pred C-HHHHHHHHHHHHcCCc
Q 028239 165 N-VKAVFDTAIKVVLQPP 181 (211)
Q Consensus 165 ~-v~~lf~~l~~~~~~~~ 181 (211)
+ |+++|...++..+...
T Consensus 162 ~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 162 RSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 5 9999999999887643
No 15
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.6e-36 Score=222.74 Aligned_cols=187 Identities=43% Similarity=0.718 Sum_probs=157.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
.||+++|++|+|||||+++|..+.++..+.+|....+...+.+++..+.+++||++|++.|..++..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999999988899877777777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
++++++|+.+...|+..+....++.|+++|+||+|+...+... ......+.+..+++.++++..+..+|+++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 9999999998557998888777899999999999997653211 11122234677888889988886689999999999
Q ss_pred CHHHHHHHHHHHHcCCchhhHHHHhhhcccCCccccc
Q 028239 165 NVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIA 201 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 201 (211)
|++++|.++++.+..... ..+.++.|.+|
T Consensus 161 ~v~e~f~~l~~~~~~~~~--------~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRP--------PHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccc--------cCcCCCcceeC
Confidence 999999999999975443 35567777764
No 16
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.3e-36 Score=220.30 Aligned_cols=172 Identities=52% Similarity=0.954 Sum_probs=149.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|.+|+|||||+.+|..+.|+..+.||.+..+...+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999999999998878767788899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++++|+.+...|...+....+++|+++||||+|+....... ......+.++.+++++++++.+..+|+++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 99999999998446988888776789999999999986542211 1112235688899999999988669999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
.|++++|+.+++.+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.4e-36 Score=225.37 Aligned_cols=163 Identities=29% Similarity=0.579 Sum_probs=145.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+.|+++|..|+|||||+.+|..+.|...+.+|.+..+ ...+.+++..+.+++||++|+++|++++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999998888886444 567888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|+++++||+.+ ..|+..+.... ++.|+++||||+|+...+. +...++.++++......|+++||++|.
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~~~~etSAktg~ 149 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNF 149 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 99999999999 88999888765 6899999999999976544 888899999988633489999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 028239 165 NVKAVFDTAIKVVLQP 180 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~ 180 (211)
||+++|+++++.+...
T Consensus 150 gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 150 NVDEIFLKLVDDILKK 165 (202)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 18
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=223.50 Aligned_cols=184 Identities=33% Similarity=0.572 Sum_probs=158.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
...+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+++|||||+++|..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 55799999999999999999999999998888898888887888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++++|+.+ ..|...+.... ++.|+++|+||+|+...+. +...++..+++..+. +|+++||+
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak 150 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK 150 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence 9999999999999 78888877654 5889999999999876443 677788888888887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhhHHHHhhhcccCCcccc
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSI 200 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~ 200 (211)
+|.|++++|.++++.+....... ....+.+++.+-|.+
T Consensus 151 ~~~gi~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~ 188 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRKYLKED-MPSQKQKKKGGLCLI 188 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcc-chhhhhhccCCeeee
Confidence 99999999999999987764433 344455555555654
No 19
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.4e-36 Score=222.59 Aligned_cols=186 Identities=47% Similarity=0.874 Sum_probs=158.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||+++|.++.++..+.++....+...+... +..+.+.+|||||++++..+++.+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999999899888877776666665 77889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
|++++++|+++...|+..+....++.|+++|+||.|+..... ..+.+..+++.+++...+..+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 999999999985578888876667899999999999865321 11246788899999998876899999999999
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHhhhcccCCccccc
Q 028239 166 VKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIA 201 (211)
Q Consensus 166 v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 201 (211)
++++|+.+++.+.....+. ..++..++++|.+|
T Consensus 155 v~~~f~~l~~~~~~~~~~~---~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKA---IFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhccCCCCcccccC
Confidence 9999999999998766555 34456667777664
No 20
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=7.1e-37 Score=225.91 Aligned_cols=182 Identities=36% Similarity=0.609 Sum_probs=154.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
||+++|.+|+|||||+++|..+.+...+.+|.++.+...+.+++..+.+++||+||+++|..++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888877777777888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 88 ISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
++.++|..+ ..|+..+.... ++.|+++|+||+|+...+. +...++.++++.++. +|+++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999998 78888776543 4789999999999976543 777788888888887 9999999999
Q ss_pred CCHHHHHHHHHHHHcCCchhhHH----HHhhhcccCCccccc
Q 028239 164 QNVKAVFDTAIKVVLQPPRRKEM----MARKKRHRRSSCSIA 201 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~~~~~~~~----~~~~~~~~~~~c~~~ 201 (211)
.|++++|+++++.+..+...... ...++++++.+|.+|
T Consensus 149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999998766555422 233345556666553
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.2e-36 Score=219.86 Aligned_cols=162 Identities=27% Similarity=0.525 Sum_probs=147.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|.+|+|||||++++..+.++..+.+|.+..+...+.+++..+.+++||+||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999999988889988777777888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++.+|+.+ ..|...+.+.. +++|+++|+||+|+.+.+. ++.+++.++++..+. +|+++||++|
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~ 149 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR 149 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence 99999999999 77888777643 5899999999999976543 788899999999887 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 028239 164 QNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~ 179 (211)
.||+++|+++++.+..
T Consensus 150 ~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 150 HYIDDAFHGLVREIRR 165 (172)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998875
No 22
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.1e-35 Score=216.45 Aligned_cols=171 Identities=63% Similarity=1.054 Sum_probs=148.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|.+|+|||||+.++..+.+...+.+|....+...+.+++..+.+++|||||++.|..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 47999999999999999999999999999999987777777788899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++++|..+...|+..+....++.|++||+||+|+.+.+... ......+.++.+++.+++++++..+|+++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99999999998557888887766789999999999996532110 1111234588999999999999669999999999
Q ss_pred CCHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKV 176 (211)
Q Consensus 164 ~~v~~lf~~l~~~ 176 (211)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 23
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-35 Score=219.74 Aligned_cols=170 Identities=27% Similarity=0.467 Sum_probs=148.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888888887554 4566777 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 85 FSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
||++++++|+.+ ..|+..+.... .++|++||+||+|+...+. +..+++.++++..+..+|+++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999 88988876532 5789999999999975433 7888999999999855999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCchhhHHH
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPRRKEMM 187 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~~~~~~ 187 (211)
|++|.|++++|+++++.+....+...+.
T Consensus 150 ak~~~~v~e~f~~l~~~l~~~~~~~~~~ 177 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILANDKNLQQA 177 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHhchhhHhh
Confidence 9999999999999999998765544443
No 24
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.2e-37 Score=206.13 Aligned_cols=165 Identities=35% Similarity=0.618 Sum_probs=154.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..++.+|+|++|+|||+|+-+|..+.|...|..|.+..+ .+++.++|..+.++|||++|+++|+.+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 346889999999999999999999999999999997555 5788999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|||+++.+||.++ .+|++.++..++..|-++||||+|++..+. +..++++.|+...++ .+||+||+++
T Consensus 87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~ 154 (198)
T KOG0079|consen 87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKEN 154 (198)
T ss_pred EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhc
Confidence 9999999999999 999999999999999999999999998876 999999999999998 9999999999
Q ss_pred CCHHHHHHHHHHHHcCCc
Q 028239 164 QNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~~~ 181 (211)
.|++..|.-|.+...+..
T Consensus 155 ~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 155 ENVEAMFHCITKQVLQAK 172 (198)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 999999999988876644
No 25
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-36 Score=213.12 Aligned_cols=174 Identities=34% Similarity=0.584 Sum_probs=161.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
++.+||+++|++++|||-|+.||..+.|..+..+|.+..+ ...+.++++.++.+||||+||++|+.....+++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 4678999999999999999999999999999999998666 567899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++...+|+.+ .+|+.+++.+. +++++++||||+||.+.+. +..++++.+++..+. .|+++||.
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl 159 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL 159 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence 99999999999999 99999999988 8999999999999998766 999999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhhHHHHh
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRKEMMAR 189 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~ 189 (211)
++.||+++|..++..|+..-.++.....
T Consensus 160 ~~tNVe~aF~~~l~~I~~~vs~k~~~~~ 187 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEIYKIVSKKQLDEN 187 (222)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999887766655433
No 26
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.1e-34 Score=211.24 Aligned_cols=171 Identities=60% Similarity=1.040 Sum_probs=149.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI 88 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (211)
|+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+++|||||++.|..++..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999998888888777777888999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 89 SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
++++|+.+...|+..+....++.|+++|+||+|+....... ........++.+++.++++..+..+|+++||++|.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998567999998877899999999999997533211 1122234578889999999999778999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028239 167 KAVFDTAIKVVLQ 179 (211)
Q Consensus 167 ~~lf~~l~~~~~~ 179 (211)
+++|+.+++.+++
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998865
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=9.1e-35 Score=210.25 Aligned_cols=162 Identities=33% Similarity=0.638 Sum_probs=144.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.+||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888876555 35567888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+...+. ++.+++.++++..+. +|+++||++|
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999999 88988876654 6899999999999977654 788889999998887 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 028239 164 QNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~ 179 (211)
.|++++|.++++.+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 28
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1e-34 Score=209.15 Aligned_cols=160 Identities=33% Similarity=0.604 Sum_probs=142.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|++|+|||||++++..+.+...+.+|....+...+.+++..+.+.+||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999999888888887777777888998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++++++.+ ..|...+.... ++.|+++|+||+|+...+. +..+++..+++.++. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04136 81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999998 78888877653 5899999999999976543 677777888888885 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
.|+.++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~~ 162 (163)
T cd04136 149 INVDEVFADLVRQI 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998765
No 29
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=200.02 Aligned_cols=166 Identities=31% Similarity=0.625 Sum_probs=153.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.-+|++++|...+|||||+.++.+..|...+.+|.+..+. +++....+.+.+++|||+|+++|+.++..++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 3469999999999999999999999999999999887664 566667788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+||++|.+||..+ +.|...+.... .+.|+|+|+||||+.+++. ++.+.++.+++++|. .|||+||+.
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~ 167 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE 167 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence 9999999999999 99999999887 6999999999999999876 999999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCch
Q 028239 163 QQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~~~ 182 (211)
+.||+.+|+.++..+-+...
T Consensus 168 NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccHHHHHHHHHHHHHHHhh
Confidence 99999999999998865443
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.2e-34 Score=209.13 Aligned_cols=161 Identities=31% Similarity=0.589 Sum_probs=143.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
++||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.+..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999988888888888777778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|+++..+|+.+ ..|...+.... ++.|+++|+||+|+..... +...+..++++..+. +|+++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999998 77877776543 6899999999999976543 667777888888886 9999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 028239 164 QNVKAVFDTAIKVVL 178 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~ 178 (211)
.|++++|.++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998653
No 31
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.9e-34 Score=214.35 Aligned_cols=166 Identities=31% Similarity=0.576 Sum_probs=147.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4578999999999999999999999999888888876443 456677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+|||++++++|+.+ ..|+..+....+..|++||+||+|+..... +..+++..+++..+. +|+++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999999 889999888778899999999999976543 677888888888886 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCc
Q 028239 163 QQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~~ 181 (211)
|.||+++|+++.+.+....
T Consensus 152 ~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 152 NINVEEMFNCITELVLRAK 170 (199)
T ss_pred CcCHHHHHHHHHHHHHHhh
Confidence 9999999999999997643
No 32
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-36 Score=202.19 Aligned_cols=174 Identities=30% Similarity=0.545 Sum_probs=159.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+|++++|+.|+|||+|+.+|..++|.++...|.+..+ ++.+.+.++.++++||||+|+++|++....+++.+.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 3567999999999999999999999999999999998766 678889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++++|+.+ ..|+.-.+... +++-++++|||.||.+++. ++..++..|+++... .++|+||+
T Consensus 87 LVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~ 154 (214)
T KOG0086|consen 87 LVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL 154 (214)
T ss_pred EEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeeccc
Confidence 99999999999999 99999988887 6888999999999998876 999999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhhHHHHh
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRKEMMAR 189 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~ 189 (211)
+|+||++.|-...+.++...+..+..+.
T Consensus 155 TGeNVEEaFl~c~~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNKIESGELDPE 182 (214)
T ss_pred ccccHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 9999999999999998876665554433
No 33
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=8.6e-34 Score=206.55 Aligned_cols=172 Identities=52% Similarity=0.982 Sum_probs=149.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||++++..+.+.+.+.++..+.+...+.+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777778889989999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc--cccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY--LADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
++++.+|+.+...|...+....++.|+++|+||+|+.+.... .......+.++.+++..+++..+..+|+++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 999999999866788888776689999999999998654211 112223345778889999999987789999999999
Q ss_pred CHHHHHHHHHHHHc
Q 028239 165 NVKAVFDTAIKVVL 178 (211)
Q Consensus 165 ~v~~lf~~l~~~~~ 178 (211)
|++++|+.+++.++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998764
No 34
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-34 Score=212.19 Aligned_cols=168 Identities=30% Similarity=0.551 Sum_probs=147.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999887888876544 466778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++++|..+ ..|+..+.... .+.|+++|+||+|+.+... ++.+++..+++..+. +|+++||++|.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999999 78999888765 4789999999999986543 777888888888887 99999999999
Q ss_pred CHHHHHHHHHHHHcCCchhhHH
Q 028239 165 NVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
|++++|.++++.+..+....+.
T Consensus 149 ~i~~~f~~l~~~~~~~~~~~~~ 170 (188)
T cd04125 149 NVEEAFILLVKLIIKRLEEQEL 170 (188)
T ss_pred CHHHHHHHHHHHHHHHhhcCcC
Confidence 9999999999999876554444
No 35
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.4e-34 Score=216.22 Aligned_cols=162 Identities=29% Similarity=0.453 Sum_probs=143.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+||+++|++|+|||||+++|.++.+...+.+|.+ +.+...+.+++ ..+.++|||+||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999886 44455666654 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
||++++++|+.+ ..|+..+.+.. .++|+++|+||.|+.+.+. +..+++.++++.++. +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999999 88999888764 3568999999999976543 788888999999887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 028239 161 KTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~ 180 (211)
++|+|++++|+++++.+...
T Consensus 149 ktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 36
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.3e-34 Score=207.19 Aligned_cols=159 Identities=40% Similarity=0.843 Sum_probs=148.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
||+++|++++|||||+++|.++.+++.+.+|. .+.+...+.+++..+.+++||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998 56667888999999999999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
+++++||+.+ ..|+..+....+ +.|++|||||.|+.+.+. ++.++++++++.++. +|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence 9999999999 799999999886 799999999999987554 899999999999995 999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028239 166 VKAVFDTAIKVVL 178 (211)
Q Consensus 166 v~~lf~~l~~~~~ 178 (211)
|.++|..+++.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.3e-34 Score=206.92 Aligned_cols=163 Identities=33% Similarity=0.641 Sum_probs=145.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999999998888886554 4567788888999999999999999988889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++++|..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999 78999888765 5799999999999986543 677788888888887 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
|.|++++|+++.+.+..
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998854
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.6e-34 Score=204.77 Aligned_cols=158 Identities=34% Similarity=0.628 Sum_probs=142.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+++||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888876544 466788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++++|+.+ ..|+..+.... .+.|+++|+||.|+...+. +..+++..+++..+. +|+++||++|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 88999887766 4799999999999976654 788899999998886 99999999999
Q ss_pred CHHHHHHHHHHH
Q 028239 165 NVKAVFDTAIKV 176 (211)
Q Consensus 165 ~v~~lf~~l~~~ 176 (211)
|++++|.+|++.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.2e-34 Score=208.82 Aligned_cols=164 Identities=38% Similarity=0.631 Sum_probs=143.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEEC----------CeEEEEEEEeCCCCcCcccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVD----------GSIVNLGLWDTAGQEDYSRLRP 72 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~l~D~~G~~~~~~~~~ 72 (211)
++.+||+++|++|+|||||++++.++.+.+.+.+|.+..+. ..+.+. +..+.+.+||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35699999999999999999999999999988888765443 334433 4568899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI 150 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (211)
.+++++|++++|||++++++|..+ ..|+..+.... ++.|+++|+||+|+.+.+. ++.+++.++++..
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~ 150 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKY 150 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHc
Confidence 999999999999999999999999 88998887654 6899999999999976544 7788899999999
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+. +++++||++|.|++++|+++++.+++
T Consensus 151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 87 99999999999999999999988764
No 40
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=8.5e-34 Score=204.49 Aligned_cols=160 Identities=30% Similarity=0.591 Sum_probs=142.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|.+|+|||||++++..+.+...+.+|..+.+...+.+++..+.++|||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888887666777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++.+|+++ ..|...+.... .+.|+++|+||+|+..... +...+...+++..+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 99999999999 78888877654 5899999999999875443 666777888888876 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
.|+.++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd04176 149 TMVNELFAEIVRQM 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 41
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.6e-34 Score=211.05 Aligned_cols=165 Identities=35% Similarity=0.657 Sum_probs=143.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+||+++|++|+|||||++++..+.+. ..+.+|.+..+ ...+.+++..+.++|||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 45667765444 34577888899999999999999999888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
||++++++++++ ..|+..+.... .++|+++|+||.|+...+. +..+++..+++.++. +|+++||++|
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999999 88998888766 4789999999999975443 677788888888887 9999999999
Q ss_pred CCHHHHHHHHHHHHcCCchh
Q 028239 164 QNVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~~~~~ 183 (211)
.|++++|.++++.+......
T Consensus 149 ~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 149 LNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 99999999999999876433
No 42
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=7.6e-34 Score=204.88 Aligned_cols=160 Identities=36% Similarity=0.655 Sum_probs=142.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||++++.+..+...+.++..+.+...+.+++..+.+.+||+||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888877777778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
++++++++.+ ..|...+.... .+.|+++|+||+|+...+. +..+++..+++..+. +|+++||++|.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999998 78877776543 4789999999999976543 677788888888886 99999999999
Q ss_pred CHHHHHHHHHHHHc
Q 028239 165 NVKAVFDTAIKVVL 178 (211)
Q Consensus 165 ~v~~lf~~l~~~~~ 178 (211)
|++++|+++++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 43
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.9e-33 Score=204.66 Aligned_cols=169 Identities=51% Similarity=0.942 Sum_probs=145.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||+.++.++.+...+.+|..+.+...+.+++..+.+++||+||++.+..++..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999999999999877777778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
++++++|+.+...|+..+....++.|+++|+||.|+....... ......+.+..+++..+++..+..+|+++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 9999999998567888888766789999999999986432100 11112345788899999999987799999999999
Q ss_pred CHHHHHHHHHH
Q 028239 165 NVKAVFDTAIK 175 (211)
Q Consensus 165 ~v~~lf~~l~~ 175 (211)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999988764
No 44
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.9e-34 Score=212.57 Aligned_cols=173 Identities=28% Similarity=0.413 Sum_probs=136.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|.+++|||||+++|..+.+.. +.+|.+..+... .. ..+.+.+||+||++.|..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-QW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-Ee--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999875 456655433211 12 45788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccc---------cccccCCccccHHHHHHHHHHhCC----
Q 028239 87 LISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGY---------LADHVGSNVITTAQGEELRKQIGA---- 152 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---- 152 (211)
++++++|..+ ..|+..+.+. .+++|+||||||+|+.+.... .......+.++.+++.+++++.+.
T Consensus 77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 9999999999 5555555543 367999999999999752110 111122456899999999999872
Q ss_pred ---------ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 153 ---------AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 153 ---------~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
.+|+|+||++|.||+++|..+++.+.....+.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~ 196 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ 196 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999999887543333
No 45
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=7.5e-35 Score=209.89 Aligned_cols=179 Identities=62% Similarity=1.069 Sum_probs=164.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
...+|++|+|+..+|||+|+-.+..+.|+..|.||..+.+...+.++ ++.+.+.+|||+|+++|+.+++..++++|.|+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+||++.+++||+++...|+.++.++.|+.|+|+||+|.||.++.... ..+.....++.+++..+++++++..|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999999999999999999999999999999998543211 2223455699999999999999989999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCch
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++..|+.++|+..++.++...+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999998776
No 46
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.5e-33 Score=203.76 Aligned_cols=160 Identities=32% Similarity=0.656 Sum_probs=141.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888876544 345667788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++..+. +++++||++|.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999999 88998887765 5889999999999976553 667788888888887 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 028239 165 NVKAVFDTAIKVVL 178 (211)
Q Consensus 165 ~v~~lf~~l~~~~~ 178 (211)
|++++|+++.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.6e-33 Score=212.06 Aligned_cols=163 Identities=28% Similarity=0.461 Sum_probs=142.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
...+||+++|.+|+|||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|+++|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4678999999999999999999999999888888886444 456667778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+|||++++++|+.+ ..|+..+....++.|+++||||+|+.... +..++. ++++..+. +|+++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999999 89999998777899999999999996432 344444 66677666 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
|.|++++|+++++.+.+.
T Consensus 157 ~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 999999999999999765
No 48
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.5e-33 Score=206.48 Aligned_cols=171 Identities=28% Similarity=0.537 Sum_probs=143.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|..|+|||||+++|..+.+.+.+.+|.+..+ .+.+.+++..+.+++||++|++.|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999998999987555 467888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++++|.++ ..|+..+....+ ..| ++||||+|+..... ....+ ...++++++++..+. +++++||++|.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~----~~~~~-~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP----PEEQE-EITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc----chhhh-hhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 889998877653 456 68899999963210 00011 224677888888886 99999999999
Q ss_pred CHHHHHHHHHHHHcCCchhhH
Q 028239 165 NVKAVFDTAIKVVLQPPRRKE 185 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~~~~~~ 185 (211)
|++++|+++++.+.+-+....
T Consensus 153 ~v~~lf~~l~~~l~~~~~~~~ 173 (182)
T cd04128 153 NVQKIFKIVLAKAFDLPLTIP 173 (182)
T ss_pred CHHHHHHHHHHHHHhcCCChh
Confidence 999999999999876444433
No 49
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.6e-33 Score=202.51 Aligned_cols=159 Identities=38% Similarity=0.638 Sum_probs=141.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+++||+||++++..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999999888888888777777888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|+++..+++++ ..|...+.+.. ++.|+++|+||+|+.... +...++.++++..+. +++++||++|
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR 147 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence 99999999998 77877777654 589999999999987632 567778888888887 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
.|++++|+++++.+
T Consensus 148 ~gi~~l~~~l~~~~ 161 (162)
T cd04138 148 QGVEEAFYTLVREI 161 (162)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 50
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.7e-33 Score=203.44 Aligned_cols=158 Identities=27% Similarity=0.535 Sum_probs=139.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||+++++++.+...+.++....+...+..++..+.+.+||+||++++..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777777778888999999999999999988888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
++++++++.+ ..|+..+.... +++|+++|+||+|+...+. +..+++..++...+. +|+++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999998 78877776543 5799999999999976443 777788888888886 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028239 163 QQNVKAVFDTAIKV 176 (211)
Q Consensus 163 ~~~v~~lf~~l~~~ 176 (211)
|.|++++|++|+..
T Consensus 150 g~~v~~~f~~l~~~ 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999753
No 51
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.4e-33 Score=202.72 Aligned_cols=161 Identities=32% Similarity=0.682 Sum_probs=143.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998888778776444 46677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
||++++++|..+ ..|+..+.... ++.|+++|+||+|+..... +..+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999999 78999888766 6799999999999876543 777888899998887 9999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 028239 164 QNVKAVFDTAIKVVL 178 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~ 178 (211)
.|++++|.++++.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998875
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.7e-33 Score=201.93 Aligned_cols=160 Identities=36% Similarity=0.642 Sum_probs=142.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+++||+||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999998888888887777777788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|+++..+++.+ ..|...+.... .+.|+++|+||+|+...+. +..+++.++++..+. +++++||++|
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 99999999998 78887777643 5889999999999976543 677788888888886 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
.|++++|+++++.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 53
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.5e-33 Score=206.41 Aligned_cols=184 Identities=24% Similarity=0.408 Sum_probs=143.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCcccc--------ccccccC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSYRG 77 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~~ 77 (211)
+||+|+|.+|+|||||+++|.++.++..+.++.+.. +...+.+++..+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888887543 3456678898899999999997655321 2234789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
+|++++|||++++++|+.+ ..|++.+.+.. +++|+++|+||+|+...+. +..++.+.++.+...+
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999998 88887776642 5799999999999976543 5666677766544334
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHcCCchhhHH-HHhhhcccCCccccc
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM-MARKKRHRRSSCSIA 201 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~-~~~~~~~~~~~c~~~ 201 (211)
+|+++||++|.|++++|+.+++.++.+.....+ ...+..--+..|++|
T Consensus 150 ~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 150 GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 999999999999999999999999877655433 222323345566654
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6e-33 Score=200.71 Aligned_cols=160 Identities=30% Similarity=0.532 Sum_probs=137.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999988888888886544 445566788899999999999999999899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
|++++++++.+ ..|+..+.....++|+++|+||+|+.... +. .+..++++..+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999 88999998877789999999999997432 22 234556666555 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028239 166 VKAVFDTAIKVVLQP 180 (211)
Q Consensus 166 v~~lf~~l~~~~~~~ 180 (211)
++++|++|++.+.+.
T Consensus 147 v~~~f~~l~~~~~~~ 161 (166)
T cd00877 147 FEKPFLWLARKLLGN 161 (166)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999998753
No 55
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.3e-33 Score=200.05 Aligned_cols=159 Identities=26% Similarity=0.515 Sum_probs=137.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||++++..+.+.+.+.++... .+.....+++..+.+++|||||++.|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777643 33456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
|++++.++.++ ..|+..+.+..++.|+++|+||+|+... . ..+...+++..+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------------~-~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS------------V-TQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh------------H-HHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999998 8999999877778999999999998432 1 2345566676666 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028239 166 VKAVFDTAIKVVLQP 180 (211)
Q Consensus 166 v~~lf~~l~~~~~~~ 180 (211)
++++|+.+++.+.++
T Consensus 146 v~~l~~~l~~~~~~~ 160 (161)
T cd04124 146 VVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988765
No 56
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=5.5e-33 Score=205.33 Aligned_cols=168 Identities=40% Similarity=0.662 Sum_probs=133.6
Q ss_pred eeEEEEECCCCCCHHHHHH-HHhcCC-----CCCCCCCcee--eeeeEE--------EEECCeEEEEEEEeCCCCcCccc
Q 028239 6 FIKCVTVGDGAVGKTCMLI-CYTSNK-----FPTDYIPTVF--DNFSAN--------VAVDGSIVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~-~l~~~~-----~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~l~D~~G~~~~~~ 69 (211)
.+||+++|.+++|||||+. ++.++. +...+.||.+ +.+... +.+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 565443 4566777774 233222 25788999999999999975 3
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc---------ccccCCccccH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL---------ADHVGSNVITT 140 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---------~~~~~~~~~~~ 140 (211)
+...+++++|++++|||++++.||+.+...|+..+....++.|+++||||+|+.+..... ......+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 456689999999999999999999998446999888777789999999999986421100 00011356899
Q ss_pred HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 141 AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+++++++++.+. +|+||||++|.||+++|+.+++.
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999998 99999999999999999999874
No 57
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.1e-33 Score=202.09 Aligned_cols=161 Identities=25% Similarity=0.566 Sum_probs=142.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886554 556778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC------CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 86 SLISRASYENVLKKWMPELRRFA------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
|++++.+++.+ ..|+..+.... .+.|+++|+||+|+..... ++.++.+.+++..+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999998 88988887664 3689999999999975332 678888888888885 899999
Q ss_pred CCCCCCHHHHHHHHHHHHcC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~ 179 (211)
|++|.|++++|+++++.+++
T Consensus 149 a~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred CCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999988753
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5e-33 Score=201.84 Aligned_cols=163 Identities=35% Similarity=0.650 Sum_probs=142.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+++..+||+++|++++|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++++..++..+++.+|+
T Consensus 1 ~~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 1 GKSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 356779999999999999999999999998887777776444 4567788999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
+++|||++++++++.+ ..|...+.... ++.|+++|+||.|+.... +..+++++++++.+..++
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 81 CLLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----------VSTEEAQAWCRENGDYPY 148 (170)
T ss_pred EEEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-----------cCHHHHHHHHHHCCCCeE
Confidence 9999999999999998 78887776533 468999999999987322 678889999998886689
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+++||++|.|+.++|+++++.
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 59
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=197.89 Aligned_cols=171 Identities=32% Similarity=0.639 Sum_probs=157.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
+...+||+++|..-+|||||+-+++.++|.....+|....| .+.+.+.+....+.||||+|+++|..+-+.+++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35679999999999999999999999999999999986555 57788899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++|.+||+.+ +.|...++... ..+-+++||||+||..++. ++..++..+++..++ .|+++||
T Consensus 90 lLVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSA 157 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSA 157 (218)
T ss_pred EEEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccc
Confidence 999999999999999 99999999887 5678899999999998876 999999999999999 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchhhH
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPRRKE 185 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~~~~ 185 (211)
+++.||.++|+.+.+.+++.....+
T Consensus 158 k~N~Gi~elFe~Lt~~MiE~~s~~q 182 (218)
T KOG0088|consen 158 KDNVGISELFESLTAKMIEHSSQRQ 182 (218)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999988654443
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=3.6e-33 Score=200.90 Aligned_cols=158 Identities=34% Similarity=0.570 Sum_probs=140.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD--GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
+||+++|.+++|||||++++.++.+...+.+|.+..+ ...+.+. +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999998888888876554 4555666 778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|||+++++++..+ ..|+..+....++.|+++|+||.|+..+.. +..+++.++++..+. +++++||+++
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999998 889998887778999999999999976543 777888899999887 9999999999
Q ss_pred CCHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKV 176 (211)
Q Consensus 164 ~~v~~lf~~l~~~ 176 (211)
.|++++|++|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998754
No 61
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=5e-33 Score=208.28 Aligned_cols=169 Identities=31% Similarity=0.596 Sum_probs=148.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGAD 79 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 79 (211)
|...+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 6777889999999999999999999999988887777775444 456778888899999999999999988888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 80 IFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
++++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+...+. ++.++++++++..+. +|+++
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~ 148 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA 148 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence 99999999999999998 78887776554 6899999999999977554 788899999999887 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCc
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
||+++.|++++|.++++.+++..
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999997643
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.2e-33 Score=200.81 Aligned_cols=161 Identities=31% Similarity=0.543 Sum_probs=141.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
+.+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998888777776543 34567788888899999999999999988999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++.+++.+ ..|+..+.... +++|+++|+||+|+...+. +..+++..+++..+...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999998 89999887754 6899999999999976543 6778888999988876899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028239 163 QQNVKAVFDTAIKV 176 (211)
Q Consensus 163 ~~~v~~lf~~l~~~ 176 (211)
|.|++++|+++.+.
T Consensus 151 ~~~v~~~~~~l~~~ 164 (165)
T cd01864 151 SQNVEEAFLLMATE 164 (165)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 63
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-32 Score=203.99 Aligned_cols=167 Identities=32% Similarity=0.536 Sum_probs=143.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+||+++|++|+|||||+++|.++.+.. .+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 6777876655 45678899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
||++++.+++.+ ..|+..+....++.|+++|+||+|+..... ..+.+...++.+++...+. +++++||+++.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999998 889998887667899999999999864321 1123566778888888886 89999999999
Q ss_pred CHHHHHHHHHHHHcCCc
Q 028239 165 NVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~~ 181 (211)
|++++|+++.+.+.+..
T Consensus 153 gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 153 NVDELFQKVAEDFVSRA 169 (193)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987643
No 64
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=196.69 Aligned_cols=168 Identities=32% Similarity=0.544 Sum_probs=149.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.+++.++|++-+|||+|++.|..+++++-..||.+..+ ..-+.+ ++..+++++|||+|+++|++++..+++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 568999999999999999999999999999999987554 444443 688999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--C-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA--P-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+|||++|.+||+.+ +.|+.+-..+. | ++-+.+||+|+|+..++. |+.+|+++++...+. .|+|+|
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS 154 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS 154 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence 99999999999999 89988766554 4 445689999999998764 999999999999999 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
|++|.||++.|..+.+.++....+.
T Consensus 155 ak~g~NVeEAF~mlaqeIf~~i~qG 179 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIFQAIQQG 179 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999987765553
No 65
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=2.2e-32 Score=199.29 Aligned_cols=171 Identities=49% Similarity=0.911 Sum_probs=146.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
.||+++|++|+|||||+++|..+.+++.+.+|....+...+.+++..+.+.+|||||++.+...+...++++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888877776777888888999999999999999998889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
+++.++|+.+...|...+.+..++.|+++|+||+|+....... ........+...+++++++..+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 9999999998667888888766789999999999986532211 11112234667888999998887789999999999
Q ss_pred CHHHHHHHHHHHH
Q 028239 165 NVKAVFDTAIKVV 177 (211)
Q Consensus 165 ~v~~lf~~l~~~~ 177 (211)
|++++|+++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 66
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.1e-33 Score=207.84 Aligned_cols=165 Identities=33% Similarity=0.572 Sum_probs=143.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+||+++|++|+|||||+++|.++.+...+.+|.+.. +...+.+ ++..+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999999888877777543 3455555 4677899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++++|+++ ..|+..+.... ..+|++||+||.|+...+. +..+++.++++..+. +|+++||+
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak 149 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR 149 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence 9999999999999 78988887654 3578899999999977543 788889999999885 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 028239 162 TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~ 182 (211)
+|.|++++|++|++.+.+...
T Consensus 150 ~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 150 TGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998876543
No 67
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.2e-32 Score=197.45 Aligned_cols=155 Identities=26% Similarity=0.387 Sum_probs=131.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|+.|+|||||+.++..+.+.+.+.++. ..+...+.+++..+.+.+||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999998887776654 34456788899899999999999975 345688999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
+++++||+.+ ..|+..+.... +++|+++||||.|+.... .+.++.+++.++++..+..+|++|||++|.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999999 78888887765 678999999999985321 123888889999988764599999999999
Q ss_pred CHHHHHHHHHHH
Q 028239 165 NVKAVFDTAIKV 176 (211)
Q Consensus 165 ~v~~lf~~l~~~ 176 (211)
||+++|..+++.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 68
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-34 Score=192.80 Aligned_cols=171 Identities=30% Similarity=0.567 Sum_probs=153.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
...+||+++|..|+|||+|+++|..+-|++..-.|.+ +...+++.+++..+++++|||+|+++|++++..+++.++++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 3467999999999999999999999999988888876 445788999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++..++|.-+ +.|+.++.++. .++-.|+||||.|+.+.++ ++...+++|.+.... .|+++||+
T Consensus 85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsak 152 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAK 152 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhccc
Confidence 99999999999998 99999999988 4666799999999998876 888889999988776 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhhHH
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
+-+|++.+|..+.-.+....+....
T Consensus 153 ea~nve~lf~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 153 EADNVEKLFLDLACRLISEARQNDL 177 (213)
T ss_pred chhhHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998888765554443
No 69
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.4e-32 Score=199.48 Aligned_cols=162 Identities=30% Similarity=0.531 Sum_probs=139.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
||+++|.+|+|||||+++++.+.+.+.+.+|.+..+ ...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999999999987555 4667788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC-C-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA-P-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
+++++++..+ ..|+..+.+.. + +.|+++|+||.|+..... ..+..+++..+++.++. +|+++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999998 88998875543 3 578999999999865321 01345677788888887 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 028239 165 NVKAVFDTAIKVVLQ 179 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~ 179 (211)
|++++|+.+++.+.+
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 70
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1e-32 Score=207.38 Aligned_cols=164 Identities=32% Similarity=0.580 Sum_probs=146.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.++|||+||++++..++..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999998877778876544 5678888989999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+...+. +..+++..+++..+. +|+++||++
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~ 158 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE 158 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 88988888765 5899999999999976554 777888889888876 999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
|.|++++|+++++.+.+.
T Consensus 159 g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 159 ATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988663
No 71
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.6e-32 Score=197.48 Aligned_cols=158 Identities=33% Similarity=0.604 Sum_probs=140.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777775443 456778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|+++++++..+ ..|+..+.... ++.|+++|+||.|+...+. ++.+++..+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 88988877655 7899999999999976543 788888999999885 99999999999
Q ss_pred CHHHHHHHHHHH
Q 028239 165 NVKAVFDTAIKV 176 (211)
Q Consensus 165 ~v~~lf~~l~~~ 176 (211)
|++++|+++++.
T Consensus 149 ~i~~~~~~~~~~ 160 (161)
T cd04113 149 NVEEAFLKCARS 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 72
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.7e-32 Score=197.66 Aligned_cols=163 Identities=31% Similarity=0.614 Sum_probs=143.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999998887777765444 4566778888899999999999999988889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++.+++.+ ..|+..+.... ++.|+++|+||.|+..... ++.+++..++...+. +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999 88998887754 7899999999999976543 778888888888887 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
+.|++++|.++.+.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 73
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=3.1e-32 Score=197.39 Aligned_cols=162 Identities=33% Similarity=0.580 Sum_probs=143.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+++||+||+++|..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888887777777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++++++.+ ..|...+.... .+.|+++++||.|+...+. +..++...+++..+..+++++||+++
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 99999999999 78888776543 5899999999999976543 67777788888888559999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 028239 164 QNVKAVFDTAIKVVL 178 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~ 178 (211)
.|++++|+++++.++
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 74
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=5.8e-32 Score=199.20 Aligned_cols=175 Identities=46% Similarity=0.794 Sum_probs=147.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
.||+|+|++|+|||||++++..+.++..+.++....+...+.+++..+.+.+||++|++.+...++..++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988888877777777666677788888899999999999988877778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
+++.++|+.+...|...+....+++|+++||||+|+.............+.+..+++..+++..+..+|+++||++|.|+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999985579999987778899999999999854321111112234567788899999998778999999999999
Q ss_pred HHHHHHHHHHHcCCc
Q 028239 167 KAVFDTAIKVVLQPP 181 (211)
Q Consensus 167 ~~lf~~l~~~~~~~~ 181 (211)
+++|+++.+.++..+
T Consensus 162 ~~~f~~l~~~~~~~~ 176 (187)
T cd04129 162 DDVFEAATRAALLVR 176 (187)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998886543
No 75
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.4e-32 Score=198.64 Aligned_cols=159 Identities=31% Similarity=0.545 Sum_probs=138.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc-cccccccccCCcEEEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY-SRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~~~~~~~~~~~d~~i~v~d 86 (211)
||+++|++|+|||||+++++.+.+.+.+.++....+...+.+++..+.+++||+||++.+ ...+..+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988888888876666677788888899999999999863 4456778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
++++++|+.+ ..|+..+.... ++.|+++|+||+|+...+. ++.+++.++++..+. +|+++||+++
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999998 88888887754 4899999999999876543 778888899999886 9999999999
Q ss_pred C-CHHHHHHHHHHHHc
Q 028239 164 Q-NVKAVFDTAIKVVL 178 (211)
Q Consensus 164 ~-~v~~lf~~l~~~~~ 178 (211)
. |++++|+.+++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 5 99999999998764
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.1e-32 Score=196.69 Aligned_cols=161 Identities=34% Similarity=0.611 Sum_probs=141.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999998877777776444 5667788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++.++.++ ..|+..+.+..+ +.|+++|+||.|+...+. +..++...+++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999999 789998887764 699999999999976543 677788888887776 999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028239 163 QQNVKAVFDTAIKVV 177 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~ 177 (211)
|.|++++|+++++.+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.5e-32 Score=209.57 Aligned_cols=164 Identities=27% Similarity=0.465 Sum_probs=142.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|.+|+|||||+++|+.+.+...+.+|.++.+...+.+++..+.++||||+|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888899887777788889999999999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh----------CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 87 LISRASYENVLKKWMPELRRF----------APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
+++.++|+.+ ..|.+.+... ..+.|+|+|+||+|+...+. +..+++.+++.......|+
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999999 7887777643 25799999999999976443 6777777776654344899
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++||++|.|++++|++|++.+..+.
T Consensus 150 evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999875544
No 78
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.2e-32 Score=201.71 Aligned_cols=155 Identities=26% Similarity=0.501 Sum_probs=136.0
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh
Q 028239 12 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR 90 (211)
Q Consensus 12 iG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (211)
+|.+++|||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.|||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888886444 56677888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239 91 ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf 170 (211)
.+|..+ ..|+..+....+++|+++||||+|+.... +..+. .++++..+. +|++|||++|.||.++|
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence 999999 88999998877899999999999986432 34333 467777776 99999999999999999
Q ss_pred HHHHHHHcCC
Q 028239 171 DTAIKVVLQP 180 (211)
Q Consensus 171 ~~l~~~~~~~ 180 (211)
+++++.+...
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.9e-32 Score=196.70 Aligned_cols=161 Identities=30% Similarity=0.565 Sum_probs=141.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCcc-ccccccccCCcEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYS-RLRPLSYRGADIFV 82 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~~i 82 (211)
+.+||+++|++|+|||||+++++.+.++..+.++.+..+ ...+.+++..+.+.+||+||+++++ .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999998888777775443 4567788888999999999999887 57888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||+++++++..+ ..|+..+.... .++|+++|+||+|+...+. +..+++.++++..+. +|+++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence 99999999999999 88998887654 5799999999999976554 778888889988875 9999999
Q ss_pred CC---CCCHHHHHHHHHHHH
Q 028239 161 KT---QQNVKAVFDTAIKVV 177 (211)
Q Consensus 161 ~~---~~~v~~lf~~l~~~~ 177 (211)
++ +.+++++|..+++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998765
No 80
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=200.98 Aligned_cols=167 Identities=30% Similarity=0.591 Sum_probs=140.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
...+||+|+|++|+|||||+++|.++.+. .+.++.+..+ ...+.+++..+.+.|||+||++++..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 35689999999999999999999998874 4555655433 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++++|+.+...|...+.... .+.|+++|+||+|+...+. +..++...+++..+. +|+++||
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SA 159 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSA 159 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 99999999999998556777666543 4689999999999976543 677778888888886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCch
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
+++.|++++|++|.+.+.....
T Consensus 160 k~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999977543
No 81
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=2.4e-31 Score=192.95 Aligned_cols=169 Identities=62% Similarity=1.079 Sum_probs=145.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||+++|.+..+...+.++..+.+...+..++..+.+++||+||++.+...+...++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999998888888877777778888889999999999999988888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc-cccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA-DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
++++.++......|...+....++.|+++|+||+|+........ .......+..+++.+++...+..+|+++||++|.|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 99999999887788888888777899999999999876543100 00112235678888898888877999999999999
Q ss_pred HHHHHHHHHH
Q 028239 166 VKAVFDTAIK 175 (211)
Q Consensus 166 v~~lf~~l~~ 175 (211)
++++|+++++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.6e-31 Score=192.55 Aligned_cols=161 Identities=38% Similarity=0.702 Sum_probs=141.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777777766544 456777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++.+++.+ ..|+..+.... +++|+++|+||+|+..... +..+++.++++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 77988887766 6899999999999876443 677888888888886 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 028239 165 NVKAVFDTAIKVVLQ 179 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~ 179 (211)
|++++|+++.+.+.+
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998754
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.3e-31 Score=193.14 Aligned_cols=159 Identities=31% Similarity=0.567 Sum_probs=136.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+||+++|++|+|||||++++..+ .+++.+.++.+..+ ...+.++ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 58888888886444 3445554 57799999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+|||+++++++..+ ..|+..+....++.|+++|+||+|+..... +...+++.+....+. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999998 899998887767899999999999976543 666666777777776 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028239 163 QQNVKAVFDTAIKVV 177 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~ 177 (211)
+.|++++|+.+++.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999999875
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.5e-31 Score=193.98 Aligned_cols=164 Identities=20% Similarity=0.294 Sum_probs=138.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.+.+||+++|.+|+|||||+++|+++.+. ..+.+|.+..+. ..+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35789999999999999999999999998 888898876654 5677788888899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
++|||++++.+++.+ ..|+..+.. ..++|+++|+||+|+.+... +...+..++++.++...++++||+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFM-LGEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhcc-CCCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence 999999999999988 788776533 24799999999999965432 334455677788776457999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
++.|++++|+.+.+.+..
T Consensus 150 ~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 150 LGDSSNELFTKLATAAQY 167 (169)
T ss_pred cCccHHHHHHHHHHHhhC
Confidence 999999999999998764
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.2e-31 Score=191.79 Aligned_cols=160 Identities=36% Similarity=0.653 Sum_probs=141.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
++||+++|++++|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998876777766544 56778888899999999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
||+++++++..+ ..|+..+.... +..|+++++||+|+..... ...++...+++..+. +++++||++|
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999999 88988887766 6799999999999875443 677788888888885 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
.|+.++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 86
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-34 Score=195.45 Aligned_cols=168 Identities=37% Similarity=0.591 Sum_probs=150.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEEC---------CeEEEEEEEeCCCCcCcccccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVD---------GSIVNLGLWDTAGQEDYSRLRPLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~---------~~~~~l~l~D~~G~~~~~~~~~~~ 74 (211)
..||.+.+|++|+||||++.++.+++|......|.+..+. +.+.++ +..+.+++|||+|+++|++++..|
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 4578899999999999999999999999999999877664 444442 357999999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
++.|=+++++||+++..||.++ ..|+..+.... .++.++++|||+|+.+.+. ++..++.+++++++.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl 156 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL 156 (219)
T ss_pred HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC
Confidence 9999999999999999999999 99999988665 7899999999999999876 999999999999998
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
||||+||-+|.||++..+.+...++++.++-
T Consensus 157 -PYfETSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 157 -PYFETSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred -CeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887654443
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.5e-31 Score=193.05 Aligned_cols=163 Identities=35% Similarity=0.615 Sum_probs=140.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||++++.+..+...+.++.+. .....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887777653 44556778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
|++++.+++.+ ..|...+.... .++|+++|+||+|+..+.. ...++...+.+..+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999988 77877665544 2799999999999975433 56777888888887569999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 028239 161 KTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~ 180 (211)
++|.|++++|+++.+.+++.
T Consensus 150 ~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 150 KEAINVEQAFETIARKALEQ 169 (172)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988775
No 88
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.1e-31 Score=190.63 Aligned_cols=158 Identities=35% Similarity=0.605 Sum_probs=137.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++++|||||++++++..+...+.++.+ +.....+.+++..+.+++||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998777777765 445666778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++++|..+ ..|+..+.... .+.|+++|+||.|+...+. +..++...+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999998 78888877655 3699999999999965443 677788888888886 89999999999
Q ss_pred CHHHHHHHHHHH
Q 028239 165 NVKAVFDTAIKV 176 (211)
Q Consensus 165 ~v~~lf~~l~~~ 176 (211)
|++++|+++.+.
T Consensus 149 ~v~~l~~~i~~~ 160 (161)
T cd01861 149 NVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=4.9e-31 Score=198.81 Aligned_cols=160 Identities=27% Similarity=0.414 Sum_probs=135.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc-CCcEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR-GADIFVL 83 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~-~~d~~i~ 83 (211)
+||+++|++|+|||||+++|..+.+. ..+.++.+ +.+...+.+++..+.+.+||+||++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 66666665 55667788888889999999999982 23344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.+|+.+ ..|+..+.... .+.|+|+|+||+|+...+. +..+++.+++...+. +|+++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999998 78888887654 5899999999999976554 777888888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
++.||+++|+++++.+...
T Consensus 147 ~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 147 LQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999998643
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=1.1e-30 Score=187.74 Aligned_cols=159 Identities=36% Similarity=0.663 Sum_probs=137.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||+++++++.+...+.++... .....+.+.+..+.+.+||+||++.+...++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766666643 34556667777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|++++++++.+ ..|+..+.... .+.|+++|+||+|+..... +..++..++++..+. +++++||++++
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 88988887766 4789999999999875443 667777888888886 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 028239 165 NVKAVFDTAIKVV 177 (211)
Q Consensus 165 ~v~~lf~~l~~~~ 177 (211)
|++++|+++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 91
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=1.2e-30 Score=187.57 Aligned_cols=157 Identities=31% Similarity=0.632 Sum_probs=136.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777777776544 345667788899999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... ...++..++++..+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999998 77988887764 589999999999997432 567788888888876 9999999999
Q ss_pred CCHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKV 176 (211)
Q Consensus 164 ~~v~~lf~~l~~~ 176 (211)
.|++++|+++++.
T Consensus 148 ~gi~~~~~~~~~~ 160 (161)
T cd01863 148 DGVQQAFEELVEK 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 92
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.98 E-value=2.8e-31 Score=195.30 Aligned_cols=163 Identities=36% Similarity=0.639 Sum_probs=152.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
..+||+++|.+|+|||+|..+|..+.|.+.|.||.++.+.+.+.+++..+.+.|+||+|++.+..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|++++..||+.+ ..++..+.+.. .++|+++||||+|+...+. ++.+++..++...++ +|+|+||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999999 77777774433 5789999999999998765 999999999999998 799999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
+.+++++|..|++.+-.
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998866
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=9.9e-31 Score=188.34 Aligned_cols=160 Identities=35% Similarity=0.617 Sum_probs=141.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||++++.+..+...+.++..+.+.....+++..+.+.+||+||++.+...+..+++.++++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888877777778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
++++.++..+ ..|...+.... .+.|+++|+||+|+..... ....+...+.+..+. +++++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999998 66766666653 5899999999999976332 566677778888876 99999999999
Q ss_pred CHHHHHHHHHHHHc
Q 028239 165 NVKAVFDTAIKVVL 178 (211)
Q Consensus 165 ~v~~lf~~l~~~~~ 178 (211)
|++++|+++.+.+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 94
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.98 E-value=6.9e-31 Score=192.29 Aligned_cols=162 Identities=33% Similarity=0.538 Sum_probs=139.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
.||+++|.+|+|||||++++.+..+...+.++....+...+.+++..+.+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999988888888877677777888888889999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
+++..+++.+ ..|...+.+.. .+.|+++|+||+|+...+. +...+...+++..+. +++++||+++.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999999 66655555543 5789999999999876433 566667777787776 89999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 028239 165 NVKAVFDTAIKVVLQP 180 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~ 180 (211)
|+.++|.++.+.+...
T Consensus 150 gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 150 NVEEAFELLIEEIEKV 165 (180)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988644
No 95
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.3e-30 Score=186.87 Aligned_cols=158 Identities=36% Similarity=0.676 Sum_probs=140.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
||+++|++|+|||||++++++..+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 69999999999999999999998888888888877777778888889999999999999988888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239 88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
++++++.++ ..|...+.... ...|+++|+||+|+...+. +..+++..++...+. +++++||+++.|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999998 77777776655 4899999999999987443 677888888888885 999999999999
Q ss_pred HHHHHHHHHHHH
Q 028239 166 VKAVFDTAIKVV 177 (211)
Q Consensus 166 v~~lf~~l~~~~ 177 (211)
++++|++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 96
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.6e-33 Score=185.07 Aligned_cols=163 Identities=32% Similarity=0.608 Sum_probs=146.6
Q ss_pred EEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 10 VTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 10 ~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
+++|++++|||+|+-++..+.| .....+|.+..+. +.+.++++.+++++|||+|+++|++.+..+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 4789999999999999998884 5566777776664 5678899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 88 ISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
.+..||++. +.|+.++.++. ..+.+.++|||+|+.+++. +..++++.+++.++. ||.++||++|-||
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999999 99999999887 5788899999999988776 899999999999998 9999999999999
Q ss_pred HHHHHHHHHHHcCCchhh
Q 028239 167 KAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 167 ~~lf~~l~~~~~~~~~~~ 184 (211)
+..|-.|.+.+.+.....
T Consensus 149 d~af~~ia~~l~k~~~~~ 166 (192)
T KOG0083|consen 149 DLAFLAIAEELKKLKMGA 166 (192)
T ss_pred hHHHHHHHHHHHHhccCC
Confidence 999999999887654443
No 97
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4.8e-30 Score=185.54 Aligned_cols=164 Identities=28% Similarity=0.449 Sum_probs=129.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|.+|+|||||+++|..+.++..+..+. ..+.....+++..+.+++||+||.+.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999999877655433 3334444566777899999999998887777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCCCC
Q 028239 87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQQN 165 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~ 165 (211)
++++++++.+...|...+....++.|+++|+||+|+.+.... ....++...++..+.. .+++++||+++.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 999999999856788888776678999999999999765420 0012333344444432 3899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028239 166 VKAVFDTAIKVVLQ 179 (211)
Q Consensus 166 v~~lf~~l~~~~~~ 179 (211)
++++|+.+.+.+..
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988765
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.1e-29 Score=184.08 Aligned_cols=165 Identities=30% Similarity=0.567 Sum_probs=139.2
Q ss_pred CCC-CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCC
Q 028239 1 MSA-SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78 (211)
Q Consensus 1 m~~-~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~ 78 (211)
|.+ ...++|+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 553 4568999999999999999999998887776666654 34455677888888999999999999999888899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 79 DIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
|++++|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.+. +.......+.+.... ++++
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~ 148 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE 148 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence 999999999999999988 78988887665 4799999999999976543 566666777776664 8999
Q ss_pred ecCCCCCCHHHHHHHHHHHH
Q 028239 158 CSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~ 177 (211)
+||++|.|++++|+++.+.+
T Consensus 149 ~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 149 TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 99
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-31 Score=176.10 Aligned_cols=170 Identities=32% Similarity=0.581 Sum_probs=154.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
-+..+|-+++|+-|+|||+|+..|...+|..+.+.|.+..+ ...+.+.+..+++++||++|+++|+.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 35678999999999999999999999999999999997776 56778999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++.+.++..+ ..|+..-+... |+..++++|||.|+..++. +..+++.+|++..+. .|+++||
T Consensus 88 lmvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sa 155 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASA 155 (215)
T ss_pred eEEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEecc
Confidence 999999999999998 88988776665 8889999999999998876 999999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchhh
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
++|.+|++.|-+-.++++++.+..
T Consensus 156 ktg~nvedafle~akkiyqniqdg 179 (215)
T KOG0097|consen 156 KTGQNVEDAFLETAKKIYQNIQDG 179 (215)
T ss_pred cccCcHHHHHHHHHHHHHHhhhcC
Confidence 999999999999888888765443
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.4e-30 Score=188.62 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=120.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++++|||||++++..+.+.. +.+|.+..+. .+.. ..+.+++||+||+++++..+..+++.+|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 456899999999999999999999877654 4566554432 2333 34788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEEe
Q 028239 84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIEC 158 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (211)
|||++++.++.++...|.+.+... .+++|++||+||+|+... +..+++.++.+.. ...+++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence 999999999998844444444433 267999999999998653 4455555544211 11368999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 028239 159 SSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~ 175 (211)
||++|.|++++|++|.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999864
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1e-29 Score=188.86 Aligned_cols=166 Identities=26% Similarity=0.415 Sum_probs=137.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
||+++|.+|+|||||+++|+.+.+...+.++........+.+++..+.+++||+||+..|..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999888888887666666778888889999999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-HhCCceEEEecCCCCC
Q 028239 88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-QIGAAAYIECSSKTQQ 164 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~ 164 (211)
+++.+++.+ ..|+..+.... .++|+++|+||.|+..... .+...+..+... ..+. +++++||++|.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 149 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE 149 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence 999999998 78877776654 4799999999999865311 144444444443 3344 89999999999
Q ss_pred CHHHHHHHHHHHHcCCchhh
Q 028239 165 NVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~~~~~ 184 (211)
|++++|+++++.+.......
T Consensus 150 gv~~l~~~l~~~~~~~~~~~ 169 (198)
T cd04147 150 NVLEVFKELLRQANLPYNLS 169 (198)
T ss_pred CHHHHHHHHHHHhhcccccc
Confidence 99999999999886544433
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.4e-30 Score=187.21 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=120.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|.++||||||++++..+.+.. +.+|.+..+. .+..+ .+.+++||+||++.++.+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 456899999999999999999999877753 5666654432 33344 4778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-------ceE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-------AAY 155 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 155 (211)
|||+++++++.++...+...+... .+++|++||+||+|+.+. ...++ +.+..+. ..+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI 155 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence 999999999998843333333332 268999999999998754 22233 2233332 145
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++|+|+.++|++|.+.+..
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999988765
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=9.5e-30 Score=184.52 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=124.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
||+++|.+++|||||++++.+..+.. +.+|.+..+. .+..+ .+.+.+||+||++.+...|..+++.+|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987654 5666554442 33344 47788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-----CceEEEecC
Q 028239 88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-----AAAYIECSS 160 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa 160 (211)
++++++.++ ..|+..+.... .+.|+++|+||+|+... ++.+++.++++..+ ...++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999998 66666554332 46899999999999653 56666666654322 126889999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 028239 161 KTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++|.|++++|++|.+.+....
T Consensus 144 ~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999998876643
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.7e-29 Score=180.42 Aligned_cols=157 Identities=39% Similarity=0.759 Sum_probs=136.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|++++|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998888777765444 556677778899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
|+++++++..+ ..|+..+.... ++.|+++++||+|+..... ...++..+++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999998 77998888776 6899999999999963332 677888888888776 99999999999
Q ss_pred CHHHHHHHHHH
Q 028239 165 NVKAVFDTAIK 175 (211)
Q Consensus 165 ~v~~lf~~l~~ 175 (211)
|++++|+++.+
T Consensus 149 ~i~~~~~~i~~ 159 (159)
T cd00154 149 NVEELFQSLAE 159 (159)
T ss_pred CHHHHHHHHhC
Confidence 99999999863
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.2e-29 Score=186.22 Aligned_cols=161 Identities=20% Similarity=0.321 Sum_probs=124.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.+||+++|++|+|||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++++...|..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999999887654 45543222 233333 346688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH--hC---CceE
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ--IG---AAAY 155 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~ 155 (211)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... +..++...+... .. ..++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999999887 66766665433 47999999999998643 333444443321 11 1368
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++|.|++++|++|.+.+.+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998853
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.9e-30 Score=187.21 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=123.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI 88 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (211)
|+++|++|+|||||+++|.+..+...+.+|.+... ..++...+.+.+||+||++.++..|..+++++|++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999988888888875432 233444588999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccH----HHHHHHHHHhCCceEEEecCCC--
Q 028239 89 SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITT----AQGEELRKQIGAAAYIECSSKT-- 162 (211)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~sa~~-- 162 (211)
++.++..+ ..|+..+....+++|+++|+||+|+...+. +.. .++..++++.+. +++++||++
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 146 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG 146 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence 99999988 677777655447899999999999876532 221 223455555565 889988888
Q ss_pred ----CCCHHHHHHHHHH
Q 028239 163 ----QQNVKAVFDTAIK 175 (211)
Q Consensus 163 ----~~~v~~lf~~l~~ 175 (211)
++||+++|+.++.
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999998863
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-29 Score=185.31 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=120.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++++|||||++++..+.+.. +.+|.+..+. .+...+ +.+++||+||++.++..|..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 346899999999999999999998887764 5566654443 334443 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEEe
Q 028239 84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIEC 158 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (211)
|||+++++++..+...+...+... ..+.|++||+||.|+.+. ....+........ ....++++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~ 158 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNWYIQGC 158 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcEEEEee
Confidence 999999999998844444443332 257899999999998653 2222221111110 11256799
Q ss_pred cCCCCCCHHHHHHHHHHHHcCC
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
||++|.|++++|++|.+.+.+.
T Consensus 159 Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 159 CATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999887653
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3e-29 Score=182.89 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=119.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++|+|||||++++..+.+. .+.+|.+..+. .+... .+.+.+||+||++.+...|..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999877774 35666654432 23333 4778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEEe
Q 028239 84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIEC 158 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (211)
|||+++++++.+....|...+... .+++|++||+||+|+.+.. ..++..+..... ....++++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~ 154 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNWYIQPT 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcEEEEEe
Confidence 999999999998844444443332 2579999999999986532 222222211111 11257789
Q ss_pred cCCCCCCHHHHHHHHHHHHc
Q 028239 159 SSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~ 178 (211)
||++|.|++++|++|.+.+.
T Consensus 155 Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 155 CATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999987753
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3.1e-29 Score=180.04 Aligned_cols=153 Identities=17% Similarity=0.218 Sum_probs=115.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|.+++|||||++++..+.+.. +.+|.+..+. .+... .+.+.+||+||++++...|..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 589999999999999999998887764 5666654432 33343 4778899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHH-HHHHHH-H--hCCceEEEecCC
Q 028239 87 LISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ-GEELRK-Q--IGAAAYIECSSK 161 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~sa~ 161 (211)
+++..++..+...|...+.... .+.|++|++||+|+.+. ....+ ...+.. . .....++++||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak 144 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNWYIQATCAT 144 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCEEEEEeeCC
Confidence 9999999998444444443322 47899999999998653 12222 222211 0 112257899999
Q ss_pred CCCCHHHHHHHHHH
Q 028239 162 TQQNVKAVFDTAIK 175 (211)
Q Consensus 162 ~~~~v~~lf~~l~~ 175 (211)
+|.|++++|++|.+
T Consensus 145 ~g~gv~~~~~~l~~ 158 (159)
T cd04150 145 SGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.6e-28 Score=184.76 Aligned_cols=166 Identities=29% Similarity=0.504 Sum_probs=141.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
.+...+||+++|++|+|||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 456779999999999999999999998888888888886555 3445567888999999999999999898889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+++|||+++..++..+ ..|+..+....++.|+++++||+|+.+.. +..+. ..+++..+. .|+++||
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~~-~~~~~~~~~-~~~e~Sa 150 (215)
T PTZ00132 85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKARQ-ITFHRKKNL-QYYDISA 150 (215)
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHHH-HHHHHHcCC-EEEEEeC
Confidence 9999999999999999 88988888767789999999999986432 22333 356666676 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 028239 161 KTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++|.|++++|.+|++.+....
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999987643
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=9.4e-29 Score=179.94 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=119.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
...++|+++|++|+|||||++++.+..+ ..+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999999998754 3445554422 23344554 778899999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIE 157 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (211)
|||++++.++... ..|+..+... ..+.|+++|+||+|+... ...++..++.+.. ...++++
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCceEEEe
Confidence 9999999999988 5555555332 268999999999999653 2334444444321 2248999
Q ss_pred ecCCCCCCHHHHHHHHHH
Q 028239 158 CSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~ 175 (211)
+||++|.|++++|++++.
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=8.1e-28 Score=178.12 Aligned_cols=146 Identities=22% Similarity=0.322 Sum_probs=121.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-----CeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-----GSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+||+++|+.++|||||++++.++.+...+.+|.+..+ .+.+.++ +..+.+++||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888888886444 3444443 577999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh--------------------CCCCcEEEEeeCCCcccCccccccccCCccccH
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRF--------------------APNVPIVLVGTKLDLREDRGYLADHVGSNVITT 140 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 140 (211)
+|+|||+++++||+.+ ..|+..+... .+++|++|||||.|+.+++. +..
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~ 149 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSG 149 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cch
Confidence 9999999999999999 8999888653 14789999999999976543 333
Q ss_pred H----HHHHHHHHhCCceEEEecCCCCC
Q 028239 141 A----QGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 141 ~----~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
+ ....++++.++ +.++.++.+..
T Consensus 150 ~~~~~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 150 NLVLTARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred HHHhhHhhhHHHhcCC-ceEEEecCCcc
Confidence 3 34567888888 88888888654
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1e-27 Score=174.61 Aligned_cols=155 Identities=20% Similarity=0.261 Sum_probs=117.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++++|||||++++..+.+.. +.+|.+..+ ..+.+++ +.+.+||+||++.+...|..+++.+|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 346899999999999999999999888765 455555443 2344444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHH----HHhCCceEEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELR----KQIGAAAYIE 157 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~ 157 (211)
|+|+++++++......+...+.... +++|+++++||+|+... .+.++. ..+. +..+ .++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~-~~~~~ 155 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHT-WHIQG 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEEe
Confidence 9999999999887334444433322 57999999999998653 222322 2221 2223 37899
Q ss_pred ecCCCCCCHHHHHHHHHH
Q 028239 158 CSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~ 175 (211)
+||++|.|++++|++|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999864
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=9.7e-28 Score=172.52 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=114.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+|+++|++++|||||+++|.+.. +...+.+|.+.... .+... .+.+++||+||++.+...|..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999876 45566666653322 22333 4778899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH---HHh-CCceEEEe
Q 028239 87 LISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR---KQI-GAAAYIEC 158 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 158 (211)
++++.++..+ ..|+..+.... .+.|+++|+||+|+.... ...+..+.. ... ...+++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~ 144 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS 144 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence 9999999887 66666554321 479999999999986542 112222111 101 11258999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 028239 159 SSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~ 175 (211)
||++|.|++++|++|.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=4.7e-28 Score=175.26 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=118.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
+|+++|+++||||||++++.++ +...+.+|.+.. ...+..++ +.+++||+||++.++.+|..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999977 666777776544 23445554 7788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCC-
Q 028239 88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQ- 163 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~- 163 (211)
++..++.++ ..|+..+.... .+.|+++|+||.|+....... ..+......+++++.+. .+++++||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999998 66766665432 589999999999997653100 00000111223323332 36788999998
Q ss_pred -----CCHHHHHHHHHH
Q 028239 164 -----QNVKAVFDTAIK 175 (211)
Q Consensus 164 -----~~v~~lf~~l~~ 175 (211)
.|+.+.|+||..
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999975
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2.4e-27 Score=175.05 Aligned_cols=157 Identities=19% Similarity=0.294 Sum_probs=122.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.+...|..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999988764 455555432 23455665 567799999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----------- 150 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (211)
|+|+++..++... ..|+..+.... .+.|+++++||+|+... +..++.+++....
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK 159 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence 9999999999887 55555554322 57999999999998643 4556666555421
Q ss_pred ----CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 151 ----GAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 151 ----~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
...+++++||++|.|++++|++|.+.+
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 123689999999999999999998753
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.7e-27 Score=169.79 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
||+++|++++|||||++++..+.+.. +.+|.+..+. .+... .+.+++||+||++.++..|..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877654 3455443322 23333 36788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHH-HHH----HHhCCceEEEecCC
Q 028239 88 ISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE-ELR----KQIGAAAYIECSSK 161 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~sa~ 161 (211)
+++.++......|...+.... ++.|+++|+||+|+.... ...+.. .+. ...+ .+++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRT-WSIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCc-EEEEEeecc
Confidence 999888776344444444322 579999999999986532 112221 111 1112 269999999
Q ss_pred CCCCHHHHHHHHHH
Q 028239 162 TQQNVKAVFDTAIK 175 (211)
Q Consensus 162 ~~~~v~~lf~~l~~ 175 (211)
+|.|++++|++|++
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999875
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=7e-27 Score=170.20 Aligned_cols=160 Identities=23% Similarity=0.342 Sum_probs=124.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
...+.+||+++|+.+||||||++++..+.+.. ..||.+... ..+.+++ +.+.+||.+|+..++..|..++.++|++
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 35788999999999999999999998876433 444544333 3455566 6677999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH--h---CCceE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ--I---GAAAY 155 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ 155 (211)
|||+|.++.+.+.+....+...+.... .+.|+++++||+|+.+. .+.++....... + ....+
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v 153 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSV 153 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEE
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEE
Confidence 999999999999988555555555433 68999999999998764 344444443321 1 22468
Q ss_pred EEecCCCCCCHHHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+.+||.+|+|+.+.|+||.+.+
T Consensus 154 ~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 154 FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHhcC
Confidence 8999999999999999999875
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=7.3e-27 Score=168.84 Aligned_cols=152 Identities=20% Similarity=0.311 Sum_probs=114.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF------PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
+|+++|++|+|||||++++.+... ...+.+|....+ ..+.+++ ..+.+||+||++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999986432 223334433333 2344554 6778999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh------CCc
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI------GAA 153 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 153 (211)
++|+|+++++++... ..|+..+.... .+.|+++++||+|+... ...++..++.+.. ...
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence 999999999888887 55555544322 58999999999998653 3334444443332 123
Q ss_pred eEEEecCCCCCCHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
+++++||++|.|+++++++|.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 8999999999999999999864
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=6.3e-27 Score=168.05 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=113.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
+|+++|++|+|||||+++|.++.+... .+|.+..+ ..+... ..+.+.+||+||++.+...|..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999887644 45544333 223333 347889999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh-C-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHH------HHHHhCCceEEEec
Q 028239 88 ISRASYENVLKKWMPELRRF-A-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE------LRKQIGAAAYIECS 159 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s 159 (211)
+++.++..+ ..|+..+... . .+.|+++|+||+|+... ....+... +....+ .+++++|
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~S 143 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRD-WYVQPCS 143 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCc-EEEEecc
Confidence 999998888 5555544332 2 58999999999998643 12222221 111122 3789999
Q ss_pred CCCCCCHHHHHHHHHH
Q 028239 160 SKTQQNVKAVFDTAIK 175 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~ 175 (211)
|++|+|++++|++|.+
T Consensus 144 a~~~~gv~~~~~~i~~ 159 (160)
T cd04156 144 AVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccCCChHHHHHHHhc
Confidence 9999999999999864
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.3e-26 Score=170.25 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=118.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|.+|+|||||++++.++.+.. +.+|.... ...+.+++ +.+.+||+||++.++..|..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 667999999999999999999999887643 33443322 22334454 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH-----------h
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ-----------I 150 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 150 (211)
|+|+++++++... ..++..+... ..+.|+++|+||+|+... ++.++..+.... .
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~ 157 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGV 157 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCC
Confidence 9999999999887 4454444332 258999999999998643 344444333211 1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 151 GAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 151 ~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+...++++||+++.|++++++||..+
T Consensus 158 ~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 158 RPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ceeEEEEeecccCCChHHHHHHHHhh
Confidence 23468999999999999999999865
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.3e-26 Score=178.47 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=121.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-------------CeEEEEEEEeCCCCcCcc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-------------GSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~l~D~~G~~~~~ 68 (211)
+...+||+|+|..|||||||+++|.++.+...+.+|.+..+ .+.+.++ +..+.++|||++|++.|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34678999999999999999999999999888888886554 3445553 356889999999999999
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------------CCCcEEEEeeCCCcccCccccccccCC
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-------------PNVPIVLVGTKLDLREDRGYLADHVGS 135 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 135 (211)
.++..++++++++|+|||+++..+|+.+ ..|++.+.... .++|++|||||+|+...+. ....
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~ 172 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGS 172 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----cccc
Confidence 9999999999999999999999999999 89999998652 2589999999999965321 0001
Q ss_pred ccccHHHHHHHHHHhCCceE
Q 028239 136 NVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (211)
..+..+++++|+++.+..+.
T Consensus 173 s~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred ccccHHHHHHHHHHcCCCcc
Confidence 11467899999999886443
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2e-26 Score=165.13 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=115.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
||+++|.+|+|||||++++.+..+ ..+.++.+... ..+.+.+ +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999874 34444444332 2334444 6788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH----hCCceEEEecCC
Q 028239 88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ----IGAAAYIECSSK 161 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~sa~ 161 (211)
++++++... ..|+..+.... ++.|+++|+||+|+.... ..++..+.... ....+++++||+
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 143 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAV 143 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence 999999988 55555544432 589999999999987642 22233222221 122489999999
Q ss_pred CCCCHHHHHHHHHH
Q 028239 162 TQQNVKAVFDTAIK 175 (211)
Q Consensus 162 ~~~~v~~lf~~l~~ 175 (211)
+|.|++++|++|..
T Consensus 144 ~~~gv~~~~~~l~~ 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
No 124
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=5.3e-26 Score=165.45 Aligned_cols=141 Identities=30% Similarity=0.498 Sum_probs=122.9
Q ss_pred CCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhh
Q 028239 29 NKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF 107 (211)
Q Consensus 29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (211)
+.|++.+.+|.+..+ ...+.+++..+.+.||||||++++..++..+++++|++|+|||++++++|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 357788888887555 56678889999999999999999999999999999999999999999999999 7898887655
Q ss_pred C-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 108 A-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 108 ~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
. ++.|++||+||+|+...+. +..+++..+++.++. .|+++||++|.||+++|++|++.+.+..
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 4 6789999999999976443 788888889988887 8999999999999999999999986533
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-28 Score=170.97 Aligned_cols=172 Identities=33% Similarity=0.474 Sum_probs=155.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+|++|+|..++||||++.+++.+.|...|..|.+..+ ...+.++++.+.+.+||++|++.|+.+...++++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 4568999999999999999999999999999998887555 456677777788889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+||+.+|..||+.. ..|...+......+|.++|-||+|+.++.. ++..+++.+++.++. .++.+|+++
T Consensus 98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvke 165 (246)
T KOG4252|consen 98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKE 165 (246)
T ss_pred EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhh
Confidence 99999999999999 899999998889999999999999998764 899999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCchhhHHH
Q 028239 163 QQNVKAVFDTAIKVVLQPPRRKEMM 187 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~~~~~~~~ 187 (211)
.-||.++|..|+.++.+...+....
T Consensus 166 d~NV~~vF~YLaeK~~q~~kq~~~~ 190 (246)
T KOG4252|consen 166 DFNVMHVFAYLAEKLTQQKKQSLNA 190 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998766554443
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3e-25 Score=160.54 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=107.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc---------cccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP---------LSYR 76 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~---------~~~~ 76 (211)
.+|+++|.+|+|||||+++|.+..+.. .+..++.......+..+ .+.+++|||||......... ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987632 22222222222222233 36788999999843211000 0112
Q ss_pred CCcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 77 GADIFVLAFSLISRASY--ENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
.+|++++|+|+++..++ ... ..|+..+....++.|+++|+||+|+..... +.. ..++.+..+ .+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~~--~~~~~~~~~-~~ 144 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LSE--IEEEEELEG-EE 144 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HHH--HHHhhhhcc-Cc
Confidence 36899999999987653 444 567777765556899999999999975432 222 344444444 48
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
++++||++|.|++++|+++.+.++
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.3e-25 Score=164.06 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=112.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce------eeee-eEE--EEE---CCeEEEEEEEeCCCCcCcc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNF-SAN--VAV---DGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~l~l~D~~G~~~~~ 68 (211)
+|+++|++++|||||+++|++.. +...+.++. +..+ ... ..+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 222232221 1111 111 222 5667889999999999999
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
..+..+++.+|++|+|||+++..++... ..|..... .++|+++|+||+|+.... ......++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 9888899999999999999998777665 55543322 378999999999986431 1223345555
Q ss_pred HhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 149 QIGA--AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 149 ~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
..+. .+++++||++|.|++++|+++.+.+
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 5554 2489999999999999999998875
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=2.9e-25 Score=158.56 Aligned_cols=151 Identities=26% Similarity=0.353 Sum_probs=116.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
.|+++|++|+|||||++++.+..+...+.++.+..+. .+..++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 3899999999999999999999988888887765443 233444 7788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----HHhCCceEEEecC
Q 028239 88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----KQIGAAAYIECSS 160 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa 160 (211)
++..++... ..|+..+.... .+.|+++|+||+|+..... ..+..... .... .+++++||
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 143 (159)
T cd04159 78 ADRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDRE-VSCYSISC 143 (159)
T ss_pred CCHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCc-eEEEEEEe
Confidence 999988877 44444443322 5789999999999865421 11111111 1112 37899999
Q ss_pred CCCCCHHHHHHHHHH
Q 028239 161 KTQQNVKAVFDTAIK 175 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~ 175 (211)
++|.|++++|++|++
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999975
No 129
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=3.4e-25 Score=152.41 Aligned_cols=160 Identities=17% Similarity=0.252 Sum_probs=127.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
++++++|+++|..|+||||++++|.+.. ++...||.+... ++..+++ +.+++||.+||..+++.|..||...|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3568999999999999999999998877 344445544333 2334444 78889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHH------HHHHHHHhCCceE
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ------GEELRKQIGAAAY 155 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 155 (211)
+|+|.+|+..+++....+-..+.... ...|++|++||.|+... +..++ ...++++... ++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~------------l~~~~i~~~~~L~~l~ks~~~-~l 155 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA------------LSLEEISKALDLEELAKSHHW-RL 155 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc------------cCHHHHHHhhCHHHhccccCc-eE
Confidence 99999999999988666655555443 68999999999999843 22222 2334455565 89
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+-|||.+|+++.+-++|+...+.+
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEEeccccccHHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=7.8e-25 Score=158.62 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=109.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----cccccccc---ccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----YSRLRPLS---YRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~---~~~~d 79 (211)
+|+++|.+|+|||||+++|.+... ...+.++........+.+++. ..+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997653 122222322222223333432 4678999999642 22223333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 80 IFVLAFSLISR-ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
++++|+|++++ ++++.+ ..|.+.+.... .+.|+++|+||+|+..... .......+.......++
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGKPV 148 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCCCE
Confidence 99999999999 788887 78888877654 3789999999999876542 23344445555323389
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+++||+++.|++++|+++.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.4e-24 Score=153.44 Aligned_cols=157 Identities=34% Similarity=0.518 Sum_probs=123.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.+||+++|.+|+|||||++++....++..+.++.. ......+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887666665554 33444567777778899999999999988888889999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISR-ASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+|.... .++......|...+..... +.|+++++||+|+.... .. ..........+..+++++||++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~-~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LK-THVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hh-HHHHHHHhhccCCceEEeecCC
Confidence 999877 6777664466666665554 89999999999996642 22 3333344445555899999999
Q ss_pred CCCHHHHHHHHH
Q 028239 163 QQNVKAVFDTAI 174 (211)
Q Consensus 163 ~~~v~~lf~~l~ 174 (211)
+.|+.++|++|-
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999998863
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=1.5e-24 Score=157.58 Aligned_cols=153 Identities=21% Similarity=0.297 Sum_probs=112.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 457899999999999999999999876532 344444222 2344555 567799999998888888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-------ceE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-------AAY 155 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 155 (211)
|+|+++..++......+...+.... .++|+++++||+|+.... ..+ ++.+..+. .++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~---~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAE---EIAEALNLHDLRDRTWHI 152 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHH---HHHHHcCCcccCCCeEEE
Confidence 9999999888877333333333322 479999999999986532 111 22222222 247
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~ 175 (211)
+++||++|+|++++|++|.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=2.8e-25 Score=156.50 Aligned_cols=135 Identities=25% Similarity=0.286 Sum_probs=101.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc-----CccccccccccCCcEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE-----DYSRLRPLSYRGADIFV 82 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~-----~~~~~~~~~~~~~d~~i 82 (211)
||+++|++|+|||||+++|.+..+. +.+|.... ... .+||+||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 23332211 111 589999973 2333333 478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+|||++++.++.. ..|...+ ..|+++|+||+|+.+.. ...+++.++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 9999999998765 3454432 24999999999986532 4556677777777765899999999
Q ss_pred CCCHHHHHHHHH
Q 028239 163 QQNVKAVFDTAI 174 (211)
Q Consensus 163 ~~~v~~lf~~l~ 174 (211)
|.|++++|+++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=4.1e-24 Score=161.09 Aligned_cols=178 Identities=33% Similarity=0.527 Sum_probs=139.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.+||+++|++|+|||||+++|.+..+...+.+|.+..+... ....+..+.+.+||++|+++|+..+..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999987666544 44444478899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCC--ccccHHHHHHHHHHh---CCceEEEe
Q 028239 85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGS--NVITTAQGEELRKQI---GAAAYIEC 158 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~ 158 (211)
||.++..++.++...|...+.... .+.|+++++||+|+............. +.............. .. .++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeEe
Confidence 999997777777799999998887 479999999999998764311100000 112233333333222 33 48999
Q ss_pred cCC--CCCCHHHHHHHHHHHHcCCchhh
Q 028239 159 SSK--TQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 159 sa~--~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
|++ ++.++.++|..+.+.+.......
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 999 99999999999999997654443
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=8.9e-24 Score=167.39 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=118.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc----cccccc---cccCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY----SRLRPL---SYRGA 78 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~~~~---~~~~~ 78 (211)
..|+++|.|+||||||++++.+.. -...|+.|+.......+.+.+ ...+.+||+||...- ..+... .++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 479999999999999999999754 334566666555555555532 134679999996431 122222 45679
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 79 DIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
+++++|+|+++.+++++. ..|...+..+. .+.|+++|+||+|+..... +..++...+.+..+. ++
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV 305 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence 999999999988888888 88888887764 3789999999999975432 333444455555555 89
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++++|+++++++|.+.+.+
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=4.2e-24 Score=159.43 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=109.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--ccc------cc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--LRP------LS 74 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--~~~------~~ 74 (211)
+..++|+|+|++|+|||||++++++..+. .....+..+.....+.+++. ..+.+||+||...... ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999998632 22222222223333444443 2577999999733211 001 12
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+..... .. ........
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~~-----~~~~~~~~- 180 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------LE-----ERLEAGRP- 180 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------HH-----HHhhcCCC-
Confidence 5689999999999999888876 67777766544 4789999999999866432 11 23333343
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+++++||+++.|+++++++|.+.+
T Consensus 181 ~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 181 DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 899999999999999999998753
No 137
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=148.58 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=129.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
...++.+|+++|-.++||||++.+|..+.+... .||.+-.+. .+.+. .+.|.+||.+|+++++..|..++++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 356789999999999999999999988887666 677655443 22333 47888999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC----ceEE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA----AAYI 156 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 156 (211)
|||+|.+|++.+.++...+...+.+.. .+.|+++.+||.|++.. .+..++.+....... -.+.
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEe
Confidence 999999999999999777777776655 68999999999999875 343443332222211 2577
Q ss_pred EecCCCCCCHHHHHHHHHHHHcC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.++|.+|+|+.+.++|+.+.+..
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eccccccccHHHHHHHHHHHHhc
Confidence 79999999999999999988754
No 138
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=3e-23 Score=165.32 Aligned_cols=162 Identities=17% Similarity=0.272 Sum_probs=113.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-cccccc-----
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLRP----- 72 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~----- 72 (211)
|++.+.++|+++|.+|+|||||+++|++..+.. ....|+.......+..++. .+.+|||||... +..+..
T Consensus 47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHH
Confidence 345677899999999999999999999987642 2233334444455666664 567999999843 332221
Q ss_pred --ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239 73 --LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI 150 (211)
Q Consensus 73 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (211)
..+..+|++++|+|..+ ++......|++.+... +.|.++|+||+|+... ...+..+++...
T Consensus 125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~ 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTEN 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhc
Confidence 23679999999999765 3444424556655544 5678899999998642 123444455444
Q ss_pred C-CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 151 G-AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 151 ~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+ ...++++||++|.|++++|++|.+.+....
T Consensus 188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 188 HPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred CCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 3 247999999999999999999999886644
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=1.8e-23 Score=150.39 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=101.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK---FPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~---~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.|+++|.+++|||||+++|.+.. ++..+.+ ++.+.....+.+.+ ...+.+|||||++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999999643 3322222 22222223344441 2568899999999887666667889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh--CCceEEEe
Q 028239 84 AFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI--GAAAYIEC 158 (211)
Q Consensus 84 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (211)
|+|+++ .++.+.+ ..+... ...|+++++||+|+..... ......+..+..+.. ...+++++
T Consensus 81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 999987 3333332 122222 2349999999999975321 001223333444432 22489999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 028239 159 SSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~ 175 (211)
||+++.|++++|+.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998754
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=4e-23 Score=145.83 Aligned_cols=153 Identities=41% Similarity=0.698 Sum_probs=117.1
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC
Q 028239 11 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS 89 (211)
Q Consensus 11 viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (211)
++|++|+|||||++++.+... .....++.................+.+||+||...+...+...++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999887 5555555544455566666677889999999998888877888999999999999999
Q ss_pred hhhHHHHHHHH--HHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHH
Q 028239 90 RASYENVLKKW--MPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVK 167 (211)
Q Consensus 90 ~~s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 167 (211)
+.++... ..| .........+.|+++++||+|+..... ................+++++|+.++.|+.
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 149 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGVPYFETSAKTGENVE 149 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence 9998887 555 222223336899999999999876542 122211223333334599999999999999
Q ss_pred HHHHHHH
Q 028239 168 AVFDTAI 174 (211)
Q Consensus 168 ~lf~~l~ 174 (211)
+++++|.
T Consensus 150 ~~~~~l~ 156 (157)
T cd00882 150 ELFEELA 156 (157)
T ss_pred HHHHHHh
Confidence 9999886
No 141
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=3.8e-23 Score=160.41 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-c-------ccccccC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-L-------RPLSYRG 77 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~-------~~~~~~~ 77 (211)
+|+++|.+|+|||||+|+|++.++. ....+|+..........++ ..+.+|||||...... . ....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998743 4445555554444433444 4577999999754321 1 2335789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
+|++++|+|+++..+.. ..+...+... +.|+++|+||+|+.... ........+....+..++++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence 99999999999876654 3344445443 78999999999986432 22334445555555447999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+||++|.|++++++++.+.+....
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999886644
No 142
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=2.5e-24 Score=145.58 Aligned_cols=155 Identities=23% Similarity=0.322 Sum_probs=128.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+.+.++|-.++|||||++....+.+.....||.+-... .++...+.+.+||.||+.+|+++|+.|++.++++++|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 578999999999999999999988888887777765544 34445577889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-------ceEEE
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-------AAYIE 157 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 157 (211)
|+.+++........+.+.+.+.. .++|++|.|||.|++..- +.. .+..+++. +-.|.
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~~---~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SKI---ALIERMGLSSITDREVCCFS 161 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cHH---HHHHHhCccccccceEEEEE
Confidence 99999988888788888887766 799999999999998753 222 22333332 25789
Q ss_pred ecCCCCCCHHHHHHHHHHHHc
Q 028239 158 CSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+||++..|++.+.+||+++--
T Consensus 162 iScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhh
Confidence 999999999999999998753
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=8.3e-23 Score=147.63 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=107.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.|+++|.+|+|||||+++|....+...+.+... ......+... +..+.+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998886654333322 2212233332 13467889999999998888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH----Hh-CCceEEEecC
Q 028239 86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK----QI-GAAAYIECSS 160 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~sa 160 (211)
|+++....+.. ..+..+.. .+.|+++|+||+|+...... ........+.. .. ...+++++||
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEeec
Confidence 99885432221 11223333 37899999999998643210 00111111111 11 1248999999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 028239 161 KTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~ 178 (211)
++|.|+.++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987653
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.1e-22 Score=145.53 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=107.8
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------ccccc--cCCcEE
Q 028239 11 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSY--RGADIF 81 (211)
Q Consensus 11 viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~~~d~~ 81 (211)
++|.+|+|||||++++.+..+ ...+.+++.......+.+++ ..+.+|||||+..+... +..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998763 33444444444455666666 46779999999876643 34445 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
++|+|+++.++.. .+...+... +.|+++|+||+|+..... +. .+...+.+..+. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence 9999998865433 233333333 799999999999976432 22 234566677776 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028239 162 TQQNVKAVFDTAIKVV 177 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~ 177 (211)
++.|+.++++++.+.+
T Consensus 141 ~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 141 KGEGIDELKDAIAELA 156 (158)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998864
No 145
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=6.7e-23 Score=146.34 Aligned_cols=147 Identities=19% Similarity=0.227 Sum_probs=106.6
Q ss_pred EEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--------cccccccCCc
Q 028239 10 VTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--------LRPLSYRGAD 79 (211)
Q Consensus 10 ~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~~~d 79 (211)
+++|.+|+|||||+++|.+.. +.....++..+........++ +.+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875 444555555555555555666 5577999999887554 2334578899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 80 IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
++++|+|..+..+..+. .+...+... +.|+++|+||+|+..... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 99999999876554442 233344433 699999999999876432 1 2223344544789999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 028239 160 SKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~ 177 (211)
|+++.|++++|+++++.+
T Consensus 140 a~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 140 AEHGRGIGDLLDAILELL 157 (157)
T ss_pred cccCCCHHHHHHHHHhhC
Confidence 999999999999998753
No 146
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=2.6e-22 Score=136.74 Aligned_cols=170 Identities=27% Similarity=0.347 Sum_probs=143.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCcc-ccccccccCCcE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYS-RLRPLSYRGADI 80 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ 80 (211)
+.-||+++|..++|||+++..++-+. ...++.+|.++.+...+..+ +..-.+.++||.|...+. .+-..++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999988655 45567788888887766654 556678899999988774 455668899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
+++|||..|++||+.+ ..+...|.... ..+|++|++||+|+.++.. ++.+.++.|+++-.. ..+++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999988 66666676644 4789999999999987765 899999999999887 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
+|.+...+-+.|..+...+...+.+...
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pqskS~F 183 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQSKSTF 183 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCcccccC
Confidence 9999999999999999999887766655
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7.1e-23 Score=170.12 Aligned_cols=163 Identities=19% Similarity=0.184 Sum_probs=117.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----------ccccc-
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----------YSRLR- 71 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~- 71 (211)
..++|+++|.+++|||||+++|++... .....+++.+.....+.+++..+ .+|||||..+ |....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998763 45666676666666777787655 5999999632 22221
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
..+++.+|++++|+|++++.++++. .++..+.. .+.|+|+|+||+|+..... ......+..+......
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence 2246899999999999999888886 34444444 3899999999999965321 0011122222222223
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
..+++++||++|.|++++|+.+.+.+....
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 358999999999999999999998875433
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=8.1e-23 Score=163.12 Aligned_cols=152 Identities=19% Similarity=0.256 Sum_probs=110.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC---------cccccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED---------YSRLRPLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~ 74 (211)
..++|+++|.+|+|||||+|+|.+... .....+++.+.....+.+++. ..+.+|||||..+ |.+.+. .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-E 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-H
Confidence 458999999999999999999999763 344455555556666666322 3577999999722 222221 3
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
+.++|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+..... + ..+. . ...
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCC
Confidence 6789999999999999887776 66666665543 4789999999999865321 1 1111 1 123
Q ss_pred eEEEecCCCCCCHHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+++++||++|.|++++++.|.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=6.3e-23 Score=140.19 Aligned_cols=114 Identities=32% Similarity=0.534 Sum_probs=86.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
||+|+|++|+|||||+++|.+..+.. ...++....+ ............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 1222222222 23455666666689999999999888888889999999999
Q ss_pred EECCChhhHHHHH--HHHHHHHhhhCCCCcEEEEeeCCC
Q 028239 85 FSLISRASYENVL--KKWMPELRRFAPNVPIVLVGTKLD 121 (211)
Q Consensus 85 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D 121 (211)
||++++.+++.+. ..|+..+....+++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999872 235666666557899999999998
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=154.56 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=102.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------CcCcccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG-----------QEDYSRLRP 72 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~ 72 (211)
...++|+++|.+|+|||||+++|.+..+...+.+... .....+... .+.+||||| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3568999999999999999999998876543333221 112222222 477999999 344555444
Q ss_pred ccc----cCCcEEEEEEECCChhhHHH---------HHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc
Q 028239 73 LSY----RGADIFVLAFSLISRASYEN---------VLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT 139 (211)
Q Consensus 73 ~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 139 (211)
.++ ..++++++|+|.++...+.+ ....+...+.. .++|+++|+||+|+....
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------- 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------- 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence 444 34578888888765332210 00122233332 379999999999986531
Q ss_pred HHHHHHHHHHhCC--------ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 140 TAQGEELRKQIGA--------AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 140 ~~~~~~~~~~~~~--------~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.+...++.+..+. .+++++||++| |++++|++|.+.+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 2334455555553 15899999999 99999999999875433
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.2e-22 Score=164.96 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=116.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~ 74 (211)
..++|+++|++|+|||||+|+|++.. +...+++|+.+.....+.+++.. +.+|||||...+...+ ..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999874 56777888877777778888744 5699999987655432 246
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++++|||++++.++++. |+..+.. .+.|+++|+||+|+.... ...+++..+. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~~----------------~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKINS----------------LEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCcc----------------hhhhhhhcCC-c
Confidence 7899999999999998887653 5554433 378999999999985421 1234455555 7
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++++||++ .||+++|+.+.+.+.+
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHH
Confidence 89999997 6999999999888754
No 152
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=2.4e-22 Score=159.09 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=114.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc----cccccc---ccCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS----RLRPLS---YRGA 78 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~---~~~~ 78 (211)
..|+++|.|+||||||++++.... -...|+.|+.......+.+++ ...+.+||+||..... .+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 479999999999999999999865 334555555444444455544 2456799999974322 222233 4569
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 79 DIFVLAFSLISR---ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 79 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
+++++|+|+++. +.++++ ..|.+.+..+. .+.|+++|+||+|+.... ...+..+.+.+..+.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALGK 304 (329)
T ss_pred CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcCC
Confidence 999999999976 567776 77777776553 478999999999996543 223445556666665
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+++++||++++|++++++++.+.+
T Consensus 305 -~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 305 -PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred -cEEEEEccCCcCHHHHHHHHHHHh
Confidence 899999999999999999998764
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=4.4e-22 Score=142.04 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=107.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------cccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSYR 76 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~ 76 (211)
++|+++|++|+|||||++++.+... .....++........+..++ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999998763 33444444444444555555 55779999998665432 123567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.+|++++|+|++++.+..+. ..+.. ..+.|+++|+||+|+..... . ...... .+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~-~~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAG-KPII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCC-CceE
Confidence 89999999999998877775 33332 34799999999999976542 1 222333 4899
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 028239 157 ECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~ 177 (211)
++||+++.|+++++++|.+.+
T Consensus 136 ~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 999999999999999988754
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=2.2e-22 Score=149.01 Aligned_cols=147 Identities=14% Similarity=0.062 Sum_probs=99.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cceeee-eeEEEEECCeEEEEEEEeCCCCcCccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLR 71 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 71 (211)
-+|+++|.+++|||||+++|+. +.+...+. .+.+.. ......++...+.+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 44544321 111111 12223333445778899999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI- 150 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (211)
..+++.+|++++|||+++.. +... ..++..+.. .++|+++|+||+|+...+. ....++..++...+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG 149 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 99999999999999998743 2222 333333333 3789999999999965321 01233444444322
Q ss_pred ------CCceEEEecCCCCCCHH
Q 028239 151 ------GAAAYIECSSKTQQNVK 167 (211)
Q Consensus 151 ------~~~~~~~~sa~~~~~v~ 167 (211)
+. +++++||++|.|+.
T Consensus 150 ~~~~~~~~-~iv~~Sa~~g~~~~ 171 (194)
T cd01891 150 ATEEQLDF-PVLYASAKNGWASL 171 (194)
T ss_pred CccccCcc-CEEEeehhcccccc
Confidence 44 89999999997663
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.9e-22 Score=167.63 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=111.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--------cccccccc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--------SRLRPLSY 75 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~ 75 (211)
..+|+|+|.+|+|||||+++|++... .....+++.+.....+.+++. .+.+|||||.+.. ...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 46899999999999999999998763 344444455555566667774 4669999997632 22334467
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
+.+|++|+|+|+++..++.+ ..+...+... +.|+++|+||+|+.... .+....+. .+....
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~~--~g~~~~ 176 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALWS--LGLGEP 176 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHHh--cCCCCe
Confidence 89999999999999877654 4555666543 89999999999986421 11222222 233245
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++|.|++++|+++++.+.+
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 799999999999999999998855
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=2.5e-22 Score=146.16 Aligned_cols=152 Identities=22% Similarity=0.275 Sum_probs=105.0
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcC----cccccc---ccccCCcEE
Q 028239 11 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQED----YSRLRP---LSYRGADIF 81 (211)
Q Consensus 11 viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~----~~~~~~---~~~~~~d~~ 81 (211)
++|++|+|||||+++|.+... ...+.+++.......+.++ + ..+.+||+||... ...++. ..++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999999864 3344444433333444555 5 4567999999732 222222 236789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHhhhC--------CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239 82 VLAFSLISR------ASYENVLKKWMPELRRFA--------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR 147 (211)
Q Consensus 82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
++|+|+++. .++.+. ..|...+.... .+.|+++|+||+|+..... ..........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~ 147 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA 147 (176)
T ss_pred EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence 999999988 467666 56666665432 3799999999999976432 2222122333
Q ss_pred HHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 148 KQIGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 148 ~~~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.... .+++++||+++.|++++++++.+.
T Consensus 148 ~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 3333 479999999999999999998764
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.7e-22 Score=165.25 Aligned_cols=148 Identities=22% Similarity=0.290 Sum_probs=114.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------cccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~ 74 (211)
..++|+++|.+|+|||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||.+.+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 34899999999999999999999876 4566777777777777777774 5679999998765432 1235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
+.++|++++|+|++++.++++. ..|.. ..+.|+++|+||+|+..... .. ...+ .+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~-~~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENG-KP 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccC-Cc
Confidence 7889999999999998887765 44433 34789999999999965432 11 2223 37
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++++||++|.|++++++++.+.+..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999998754
No 158
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=9.9e-22 Score=162.12 Aligned_cols=159 Identities=22% Similarity=0.245 Sum_probs=116.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-----------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----------- 71 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----------- 71 (211)
..++|+++|.+++|||||+++|++.. ......+|+.+.....+..++. .+.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 45899999999999999999999875 4456666766666666666765 46699999986655432
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHH--
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRK-- 148 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 148 (211)
...++.+|++++|+|++++.+.++. .+...+... +.|+++|+||+|+.... ...++. ..+..
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL 313 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence 1257889999999999998887775 344444433 79999999999997221 111222 12222
Q ss_pred -HhCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 149 -QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 149 -~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
..+..+++++||++|.|++++|+++.+.+...
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 22335899999999999999999999877543
No 159
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.7e-22 Score=141.40 Aligned_cols=147 Identities=20% Similarity=0.279 Sum_probs=107.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------cccc--ccC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLS--YRG 77 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~--~~~ 77 (211)
|+|+++|.|++|||||+|+|++.. ....+++++.+.....+.+.+.. +.++|+||-..+... ...+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999987 44567788877777888888844 559999996443321 1223 268
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
.|++++|.|+++.+.-. .+..++.+. ++|+++|+||+|+..... +. .....+.+.++. |++.
T Consensus 79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence 99999999998754322 333444444 899999999999877653 22 235677788887 9999
Q ss_pred ecCCCCCCHHHHHHHH
Q 028239 158 CSSKTQQNVKAVFDTA 173 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l 173 (211)
+||++++|++++++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999865
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=6.7e-22 Score=145.43 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=110.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----------------eeeeeEEEEECCeEEEEEEEeCCCCcCcccc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----------------FDNFSANVAVDGSIVNLGLWDTAGQEDYSRL 70 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 70 (211)
+|+++|.+|+|||||+++|.+.........+. .......+... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999877554332211 11111222333 356789999999988888
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239 71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI 150 (211)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (211)
+..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ......+..+..+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~ 146 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI 146 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence 88889999999999999887655443 34344443 4899999999999975321 001123333333332
Q ss_pred -------------CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 151 -------------GAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 151 -------------~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
...+++++||++|.|++++|+++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2358999999999999999999998863
No 161
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=9.4e-22 Score=141.41 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=105.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------ccccc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSY 75 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~ 75 (211)
..+|+++|++|+|||||++++.+..+... ...+......... ....+.+.+||+||....... ....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999998764222 2222222222222 222356779999997554322 23347
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
..+|++++|+|++++.+... ..+...+... +.|+++|+||+|+..... ........+....+..++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~ 146 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI 146 (168)
T ss_pred HhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence 88999999999998732222 3444444443 689999999999974321 223334445555544589
Q ss_pred EEecCCCCCCHHHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+++|++++.|++++++.|.+.+
T Consensus 147 ~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 147 FPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred EEEEeccCCChHHHHHHHHhhC
Confidence 9999999999999999997753
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=7.4e-22 Score=167.12 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=116.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce------eeee-eEE--EEE---CCeEEEEEEEeCCCCcCc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNF-SAN--VAV---DGSIVNLGLWDTAGQEDY 67 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~l~l~D~~G~~~~ 67 (211)
-+|+++|++++|||||+++|+... +...+..+. +..+ ... +.+ ++..+.++||||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998742 222232221 1112 111 222 466789999999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR 147 (211)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
...+..+++.+|++++|+|+++..+.+.. ..|...+. .+.|+++|+||+|+.... ......++.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el~ 147 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEIE 147 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHHH
Confidence 99889999999999999999998777776 55554443 278999999999986431 122234455
Q ss_pred HHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 148 KQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 148 ~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
+.++. ..++++||++|.|++++|++|.+.+...
T Consensus 148 ~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 148 EVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 55554 2489999999999999999999987654
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3.6e-21 Score=139.38 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=106.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-----------cc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-----------RP 72 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----------~~ 72 (211)
.++|+++|.+|+|||||++++++... .....++........+..++.. +.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 58999999999999999999998753 2333444444444455566644 569999997543211 01
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH-HHHHHHHhC
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ-GEELRKQIG 151 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (211)
..++.+|++++|+|++++.+.... .+...+... +.|+++++||+|+..... ..... ...+.+..+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 145 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence 245789999999999998776654 333333332 789999999999876531 11222 222333332
Q ss_pred ---CceEEEecCCCCCCHHHHHHHHHHH
Q 028239 152 ---AAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 152 ---~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
..+++++||+++.|++++++.+.+.
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 3589999999999999999998764
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.8e-21 Score=162.91 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=109.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+..+|+++|++++|||||+++|.+..+...+.+.. .......+.+++. ..+.||||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 356899999999999999999999887766543322 2222234444432 15779999999999999988899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-------C-Cce
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-------G-AAA 154 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 154 (211)
+|+|+++...-+.. ..+ ..... .++|+++++||+|+.... .++..+..... + ..+
T Consensus 164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~ 226 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI 226 (587)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence 99999875433332 222 22222 379999999999986421 22222222222 2 137
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q 028239 155 YIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~ 175 (211)
++++||++|.|++++|+++..
T Consensus 227 ~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 227 FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEEECCCCCChHHHHHhhhh
Confidence 999999999999999999874
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.5e-21 Score=139.87 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=99.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----cccccCCcEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----PLSYRGADIFVL 83 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----~~~~~~~d~~i~ 83 (211)
+|+++|.+++|||||++++.+..... ..+. .+.+... .+||+||.......+ ...+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccce------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999988654211 1111 1222222 279999973322211 123689999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~ 162 (211)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+ ...+...++++..+. .|++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999998877643 233222 23679999999999854 234556677777764 4899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
|+|++++|+.+.+.+.+
T Consensus 132 g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQ 148 (158)
T ss_pred ccCHHHHHHHHHHhchh
Confidence 99999999999877644
No 166
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=2.6e-21 Score=144.01 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCC-cEEEEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA-DIFVLAFS 86 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~d 86 (211)
+|+++|++++|||+|+++|....+...+.++............+..+.+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998877765553322222222223446788999999999988888888998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccC
Q 028239 87 LISR-ASYENVLKKWMPELRRF---APNVPIVLVGTKLDLRED 125 (211)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~ 125 (211)
+++. .++.++...|++.+... .+++|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9987 67777745555555432 268999999999998654
No 167
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=2e-21 Score=132.76 Aligned_cols=170 Identities=25% Similarity=0.514 Sum_probs=141.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.-.+||.++|++..|||||+-.+.++.+.+.+..+.+..+ .+++.+.+..+.+.+||..|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 3568999999999999999999999998887777776554 678999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|+||++.+.++..+ ..|+.+-+.... -+| |+||+|.|+.-.-.+ +.++-...+++.+++-+++ +.+++|+.
T Consensus 98 FmFDLt~r~TLnSi-~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~-----e~Q~~I~~qar~YAk~mnA-sL~F~Sts 169 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSI-KEWYRQARGLNKTAIP-ILVGTKYDLFIDLPP-----ELQETISRQARKYAKVMNA-SLFFCSTS 169 (205)
T ss_pred EEEecCchHHHHHH-HHHHHHHhccCCccce-EEeccchHhhhcCCH-----HHHHHHHHHHHHHHHHhCC-cEEEeecc
Confidence 99999999999999 899888776542 345 778999997543210 0011233456788888898 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 028239 162 TQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~ 181 (211)
+..||..+|..+..++..-.
T Consensus 170 ~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred ccccHHHHHHHHHHHHhCCc
Confidence 99999999999999887644
No 168
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=1.3e-21 Score=144.61 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=102.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC----CCCCC----CCCceeeeeeEEEEEC------------CeEEEEEEEeCCCCcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN----KFPTD----YIPTVFDNFSANVAVD------------GSIVNLGLWDTAGQED 66 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~----~~~~~----~~~t~~~~~~~~~~~~------------~~~~~l~l~D~~G~~~ 66 (211)
++|+++|++++|||||+++|+.. .+... ..+++.......+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 12111 1122211111122222 3357788999999865
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
+..........+|++++|+|+++....... ..+. .... .+.|+++++||+|+..... .....++..+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~ 148 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEE--------RERKIEKMKKK 148 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 433333345678999999999886554443 2222 1122 2679999999999864321 00112222221
Q ss_pred -HHH-----hCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 147 -RKQ-----IGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 147 -~~~-----~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
... ....+++++||++|.|++++++++..++.-+
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 111 1224899999999999999999999988653
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=6.9e-21 Score=149.53 Aligned_cols=161 Identities=22% Similarity=0.244 Sum_probs=111.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--------ccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--------LRPLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~ 74 (211)
+.-.|+++|.+|+|||||+|+|++..+. ...+.|...........++ ..+.+|||||...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4567999999999999999999988743 2333343333333333333 6677999999654321 22235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
+..+|++++|+|+++..+-.. ..+...+.. .+.|+++|+||+|+..... ........+.+..+..+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence 678999999999988432222 333444443 2689999999999974322 23445556666566568
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++++||+++.|++++++++.+.+....
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999886543
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.1e-20 Score=153.42 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=113.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc----cccccc---ccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS----RLRPLS---YRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~---~~~~d 79 (211)
.|+++|.|+||||||++++.+.+. ...++.|+.......+.+++ ...+.+||+||..... .+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998652 23455555444444444441 2457799999964321 222333 45699
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 80 IFVLAFSLISR---ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
++++|+|+++. +.+++. ..|.+.+..+. .+.|++||+||+|+... .+...++.+.++.
T Consensus 239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~- 302 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP- 302 (424)
T ss_pred EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC-
Confidence 99999999865 566666 67777777654 37899999999998432 2334556666664
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+++++||+++.|++++++++.+.+...+
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 8999999999999999999998886544
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.4e-21 Score=158.49 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=109.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--------ccccccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--------SRLRPLSYR 76 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~ 76 (211)
++|+++|.+|+|||||+++|.+.. +...+.+++.+.....+.+++ ..+.+|||||.+.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876 355566666666666667777 66789999998762 122344678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.... ....++ ...+...++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence 99999999999886554432 233344443 79999999999964421 122222 344553589
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 028239 157 ECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~ 177 (211)
++||++|.|++++|+.+.+..
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 999999999999999998843
No 172
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=6.2e-21 Score=144.66 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=123.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--------ccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--------LRP 72 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~ 72 (211)
..+.--|+++|.|++|||||+|++++.+ +...-..|+.......+..++ .++.++||||--.-.. ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 4456789999999999999999999988 455566667777777776665 5566999999533221 223
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
..+..+|+++||+|++....-.+ +..++.+.. .+.|+++++||.|...+.. ........+......
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f 146 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPF 146 (298)
T ss_pred HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCc
Confidence 35789999999999988544433 455555555 2789999999999877642 224455555566666
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCCchh
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~ 183 (211)
...+++||++|.|++.|.+.+..++.+...-
T Consensus 147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 147 KEIVPISALKGDNVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred ceEEEeeccccCCHHHHHHHHHHhCCCCCCc
Confidence 6899999999999999999999998776543
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=7.8e-21 Score=140.82 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=103.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----------cccccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----------YSRLRP 72 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~ 72 (211)
....++|+++|.+|+|||||++++++..+...+.++.+......... ....+.|||+||... +.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 44568999999999999999999999765444444433222211111 125688999999532 222223
Q ss_pred cccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 73 LSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 73 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
.+++ .++++++|+|.+++.+..+. .+...+... +.|+++++||+|+..... .....++..++...
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence 3333 34678889998876544432 222333333 789999999999865321 00112223344444
Q ss_pred hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 150 IGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
... +++++||+++.|++++++.|.+.+.
T Consensus 167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 GDD-EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344 8999999999999999999987764
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=1.1e-20 Score=154.21 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=109.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--cccccc------cccC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--SRLRPL------SYRG 77 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--~~~~~~------~~~~ 77 (211)
++|+++|.+|+|||||+|+|.+... ..+..+++.+.....+...+. ..+.+|||||..+. ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 6899999999999999999998763 334445554445455555542 14569999997432 222222 3578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
+|++++|+|++++.++..+ ..|...+.... .+.|+++|+||+|+..... .... ....+...++
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~~----~~~~~~~~~v 340 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRID----RDEENKPIRV 340 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHHH----HHhcCCCceE
Confidence 9999999999999887776 55555555443 4799999999999864311 1111 1123332358
Q ss_pred EecCCCCCCHHHHHHHHHHHHcC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.+||++|.|++++++++.+.+..
T Consensus 341 ~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 341 WLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998854
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=5.3e-21 Score=163.62 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=111.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-e--eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-F--DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
.+...|+|+|++++|||||+++|....+.....+.. . ..+...+..++..+.+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 356799999999999999999999877654333222 1 1222233334445788899999999999999989999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH-------HHHhC-C
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL-------RKQIG-A 152 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~ 152 (211)
+++|+|+++....+.. ..| ..+.. .++|+||++||+|+.... .++..+. ....+ .
T Consensus 322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCC
Confidence 9999999885433332 222 22222 379999999999986532 1111111 22223 2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
.+++++||++|.|++++|+++....
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhhh
Confidence 4899999999999999999998764
No 176
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-20 Score=126.45 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=125.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.++++|+++|-.++||||++..|..+.... ..||.+-.+. .+++ +.+.|++||.+|++..+..|.+++....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnve-tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEE-EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 468999999999999999999998876533 3455443332 2333 44888999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC----ceEEEe
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIEC 158 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 158 (211)
|+|..+.+..+++...++..+.+.. .+.|++|.+||.|+++.. ...++..+.+.-.+ --...+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCccEeecc
Confidence 9999999999998888888887665 689999999999999874 44555444332211 135679
Q ss_pred cCCCCCCHHHHHHHHHHHHc
Q 028239 159 SSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~ 178 (211)
||.+|+|+.+-|.|+...+.
T Consensus 159 ~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 159 CALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccccchhHHHHHHHHHhhcc
Confidence 99999999999999987653
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=6.1e-21 Score=157.44 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=112.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC--------ccccccccccC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED--------YSRLRPLSYRG 77 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~ 77 (211)
+|+++|.+|+|||||+|+|.+.. +...+.+++.+.....+..++. .+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876 3455666666666666677774 477999999643 22334456789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
+|++++|+|..++.+..+ ..+...+++. +.|+++|+||+|+..... . ..+ ...++..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~~--~~piilVvNK~D~~~~~~-----------~---~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRKS--GKPVILVANKIDGKKEDA-----------V---AAE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHHh--CCCEEEEEECccCCcccc-----------c---HHH-HHhcCCCCeEE
Confidence 999999999988655554 2344455544 789999999999865431 1 111 34556657999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcC
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+||++|.|+.++++.+.+.+..
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCc
Confidence 9999999999999999988755
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.2e-20 Score=161.20 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=110.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+...|+|+|+.++|||||+++|....+.....+.. .......+.+++ ..+.||||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 467899999999999999999998877655433322 222223455555 56779999999999999998899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH--HHHHHHHhC-CceEEEec
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ--GEELRKQIG-AAAYIECS 159 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~s 159 (211)
+|||+++...-+.. ..| ..... .++|+||++||+|+..... ..+..+. ...++..++ ..+++++|
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 99999885332222 222 22222 3799999999999965321 0011110 111223333 24899999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 028239 160 SKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~ 176 (211)
|++|.|++++|++|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999998763
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=5.4e-21 Score=139.82 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=98.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCCcC----------ccc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED----------YSR 69 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~l~D~~G~~~----------~~~ 69 (211)
|++.+.++|+++|.+|+|||||++++++..+...+.++.+..... .+..++ .+.+||+||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 456788999999999999999999999886433333333222211 122232 477999999532 222
Q ss_pred ccccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 70 LRPLSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 70 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
+...+++ .++++++|+|++++.+..+. .+...+... +.|+++++||+|+..... .....++.++.
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 2223343 46899999999887665554 333444443 789999999999865321 00223444445
Q ss_pred HHHhCC-ceEEEecCCCCCCHH
Q 028239 147 RKQIGA-AAYIECSSKTQQNVK 167 (211)
Q Consensus 147 ~~~~~~-~~~~~~sa~~~~~v~ 167 (211)
....+. .+++++||++|+|++
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HhhccCCCceEEEECCCCCCCC
Confidence 554432 379999999999974
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.2e-20 Score=154.32 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=113.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-----------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----------- 71 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----------- 71 (211)
..++|+++|.+++|||||+++|++.. ......+++.+.....+..++.. +.+|||||........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46899999999999999999999765 44556666666665556666644 5599999975433221
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
...++.+|++++|+|++++.+.++. .+...+... +.|+++|+||+|+.+... .. ....+.........
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~-------~~-~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT-------ME-EFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH-------HH-HHHHHHHHhccccc
Confidence 1256789999999999998887774 344444433 789999999999874321 00 01111111112223
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
..+++++||++|.|++++|+.+.+....
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999886643
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=1.7e-20 Score=138.26 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=108.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------C------CceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-------------I------PTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-------------~------~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
+.++|+++|+.++|||||+++|+...-.... . ..........+..+.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864421110 0 00001111222211334667799999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
.|.......+..+|++|+|+|+.++...+. ...+..+... ++|+++|+||+|+...+- ..+..+....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~--------~~~~~~~~~~ 149 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL--------EEIIEEIKEK 149 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH--------HHHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH--------HHHHHHHHHH
Confidence 888877777899999999999998766555 3444455555 789999999999973221 0011111223
Q ss_pred HHHHhC-----CceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 146 LRKQIG-----AAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 146 ~~~~~~-----~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+.+.++ ..+++.+||.+|.|+++|++.+.+.+
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444442 34899999999999999999998875
No 182
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.2e-21 Score=135.43 Aligned_cols=162 Identities=29% Similarity=0.455 Sum_probs=138.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.++++++|..|.|||+++++.+.+.|...+.+|.+......+...+ ..+.+..|||+|++.+......++-++.+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 6899999999999999999999999999999999877766554443 359999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
||++..-++.++ ..|...+.....++|++++|||.|..... .......+.+..+. .|+++||+.+.
T Consensus 90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~ 155 (216)
T KOG0096|consen 90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNY 155 (216)
T ss_pred eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeeccccc
Confidence 999999999999 99999998888899999999999987653 11222334445555 89999999999
Q ss_pred CHHHHHHHHHHHHcCCc
Q 028239 165 NVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 165 ~v~~lf~~l~~~~~~~~ 181 (211)
|.+.-|.|+.+++....
T Consensus 156 NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 156 NFERPFLWLARKLTGDP 172 (216)
T ss_pred ccccchHHHhhhhcCCC
Confidence 99999999999987654
No 183
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=2.9e-20 Score=152.83 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=110.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc----cc---ccccccCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS----RL---RPLSYRGA 78 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~---~~~~~~~~ 78 (211)
.+|+|+|.|+||||||+++|.+... ...|+.|+.......+.+.+ ..+.+||+||..... .+ .-..+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4899999999999999999998652 34566666555555666666 457799999963211 11 11235679
Q ss_pred cEEEEEEECCCh----hhHHHHHHHHHHHHhhhC------------CCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239 79 DIFVLAFSLISR----ASYENVLKKWMPELRRFA------------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ 142 (211)
Q Consensus 79 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (211)
|++++|+|+++. +.+.+. ..|...+..+. .+.|+|||+||+|+.+... +. +.
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l~-e~ 305 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------LA-EF 305 (500)
T ss_pred CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------HH-HH
Confidence 999999999753 234443 44444443322 3689999999999975432 21 22
Q ss_pred HHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 143 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
........+. +++++||+++.|+++++.+|.+.+...+
T Consensus 306 l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 306 VRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 2223334455 8999999999999999999999886543
No 184
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=1.5e-20 Score=140.06 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=78.7
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH 132 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 132 (211)
..+.|||+||++.|...+...+..+|++++|+|++++. .-+.. ..+ ..+... ...|+++|+||+|+.....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~-~~l-~~~~~~-~~~~iiivvNK~Dl~~~~~----- 154 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS-EHL-AALEIM-GLKHIIIVQNKIDLVKEEQ----- 154 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH-HHH-HHHHHc-CCCcEEEEEEchhccCHHH-----
Confidence 56889999999988877777788999999999998742 11111 222 222222 2357999999999865321
Q ss_pred cCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 133 VGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.....++.+++.+.+ ...+++++||++|+|++++|+++.+.+..+
T Consensus 155 ---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 001123334444433 124799999999999999999999877654
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=1.2e-20 Score=163.53 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=115.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc-cccc----------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY-SRLR---------- 71 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~~~~---------- 71 (211)
..++|+++|.+|+|||||+++|++.. ++..+.+|+.+.....+.+++..+ .+|||||..+- ...+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~--~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDW--LFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEE--EEEECCCcccCcccchhHHHHHHHHH
Confidence 45899999999999999999999986 456677777777766777787654 49999996421 1111
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHHH-
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRKQ- 149 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 149 (211)
...++.+|++++|+|+++..+.++. . +...+... +.|+++|+||+|+.+... .+.. ..+...
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~~--~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l 590 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVDA--GRALVLVFNKWDLMDEFR------------RQRLERLWKTEF 590 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHHc--CCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence 1236889999999999999888876 3 33444433 799999999999965321 1111 112222
Q ss_pred --hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 150 --IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 150 --~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
....+++.+||++|.|++++|+.+.+.+..
T Consensus 591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 233477999999999999999999998865
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=5.2e-20 Score=155.79 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=111.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPT-VFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.|+++|++++|||||+++|.+.. ++.++... +.+.....+..++ +.+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999643 33332222 2222233455555 67889999999999887777889999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC---CceE
Q 028239 83 LAFSLISR---ASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG---AAAY 155 (211)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 155 (211)
+|+|+++. ++++.+ ..+... ++| +++|+||+|+.+... .....++..++.+..+ ..++
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcE
Confidence 99999884 444333 223332 677 999999999976432 0012344556666553 2489
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++|.|++++++.+...+..
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999998877644
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=6e-20 Score=155.69 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=114.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCC-----CCCCce------eeee-eEE--EEE---CCeEEEEEEEeCCCC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DYIPTV------FDNF-SAN--VAV---DGSIVNLGLWDTAGQ 64 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~~~~t~------~~~~-~~~--~~~---~~~~~~l~l~D~~G~ 64 (211)
++.-+|+++|+.++|||||+.+|+... +.. .+..+. +..+ ... +.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 344589999999999999999998632 211 111111 1111 111 111 455788999999999
Q ss_pred cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
.+|...+..+++.+|++|+|+|+++....+.. ..|..... .+.|+++|+||+|+.... ......
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~~v~~ 148 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PERVKQ 148 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HHHHHH
Confidence 99998888899999999999999987766665 45544332 378999999999986532 112223
Q ss_pred HHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 145 ELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 145 ~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++.+.++. ..++.+||++|.|+++++++|.+.+..+
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 44444444 2489999999999999999999987654
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=9.1e-20 Score=147.27 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=115.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----c---ccccccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----L---RPLSYRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~---~~~~~~~~d 79 (211)
.|+|+|.|+||||||+|+|.+.+ ....++.|+.......+...+. ..+.++|+||...-.+ + .-..+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 79999999999999999999865 3445666666666556665532 3466999999643211 1 112467899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-
Q 028239 80 IFVLAFSLI---SRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA- 152 (211)
Q Consensus 80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (211)
++++|+|++ +.+.+++. ..|...+.... .+.|+++|+||+|+..... + .+...++.+..+.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----------l-~~~l~~l~~~~~~~ 307 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----------A-EERAKAIVEALGWE 307 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----------H-HHHHHHHHHHhCCC
Confidence 999999988 44556665 67777776653 4789999999999865432 2 2334445555442
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.+++.+||+++.|++++++.|.+.+.+.
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2689999999999999999999988654
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=9.4e-20 Score=158.08 Aligned_cols=154 Identities=20% Similarity=0.198 Sum_probs=108.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc--------cccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS--------RLRPLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~ 74 (211)
...+|+++|.+++|||||+|+|++.. .....++++.+........++ ..+.+|||||.+... .....+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34689999999999999999999875 344555555555555555666 456799999976421 222345
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++++|+|+++.....+ ..|...++.. +.|+++|+||+|+.... ......+. .+...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-------------~~~~~~~~--lg~~~ 412 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-------------YDAAEFWK--LGLGE 412 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-------------hhHHHHHH--cCCCC
Confidence 789999999999987543333 3555666544 89999999999985421 11122222 23324
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.+++||++|.||.++|+++++.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 5789999999999999999998854
No 190
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=7e-23 Score=143.93 Aligned_cols=169 Identities=28% Similarity=0.455 Sum_probs=143.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
..-++++|+|.-++|||+++.++++..+...|..|.+..+. +....+ ...+.+++||.+|+++|..+...+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 44579999999999999999999999999999988876664 344444 4557889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--C---CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA--P---NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
++|||++...+|+.. ..|.+.+.... | ..|+++..||||+...-. .-......++.+..+....+
T Consensus 103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwt 172 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWT 172 (229)
T ss_pred EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCcccee
Confidence 999999999999999 89998887655 2 467789999999876532 11236677888999988999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCch
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++|++.+.++.|+-..+++.++.+..
T Consensus 173 ets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 173 ETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred eeccccccChhHHHHHHHHHHHhhcc
Confidence 99999999999999999999987653
No 191
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.2e-21 Score=133.13 Aligned_cols=165 Identities=21% Similarity=0.269 Sum_probs=124.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC-------CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN-------KFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL 73 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~ 73 (211)
|.....+.|+++|..++|||||+.++... ..+....+|.+-.. .++.+++ ..+.+||..|++..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 34456789999999999999999876532 12334444444333 2334444 45669999999999999999
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH---HHH
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL---RKQ 149 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (211)
++..+|++|+++|+++++.|++....+...+.+.. .+.|+++.+||.|+.+.. ...+.... +..
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~ 156 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAEL 156 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhh
Confidence 99999999999999999999988555555555444 799999999999987753 33333332 233
Q ss_pred hCC--ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 150 IGA--AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 150 ~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.+. .++..+||.+|+||++...|+++.+.++
T Consensus 157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 322 4799999999999999999999999776
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=3.1e-19 Score=135.44 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=103.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-------cccccccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-------LRPLSYRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d 79 (211)
+|+++|++|+|||||+++|.+.. ....+..++.+.....+.+++ ..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 79999999999999999999876 344555555555556666776 5677999999754331 1224688999
Q ss_pred EEEEEEECCChhh-HHHHHHHHHH-----------------------------------------HHhh-----------
Q 028239 80 IFVLAFSLISRAS-YENVLKKWMP-----------------------------------------ELRR----------- 106 (211)
Q Consensus 80 ~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~~~----------- 106 (211)
++++|+|+++.+. ...+ ...+. .+.+
T Consensus 80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 2222 11111 1111
Q ss_pred --------------hCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q 028239 107 --------------FAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172 (211)
Q Consensus 107 --------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~ 172 (211)
....+|+++|+||+|+.. .++...+++. .+++++||+++.|++++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~ 220 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER 220 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence 112368999999999853 2333344443 26899999999999999999
Q ss_pred HHHHH
Q 028239 173 AIKVV 177 (211)
Q Consensus 173 l~~~~ 177 (211)
+.+.+
T Consensus 221 i~~~L 225 (233)
T cd01896 221 IWDKL 225 (233)
T ss_pred HHHHh
Confidence 98865
No 193
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=1e-19 Score=154.20 Aligned_cols=145 Identities=16% Similarity=0.263 Sum_probs=107.8
Q ss_pred CCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------ccccc--cCCcEEEE
Q 028239 13 GDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSY--RGADIFVL 83 (211)
Q Consensus 13 G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~~~d~~i~ 83 (211)
|.+|+|||||+|++.+... ..++++++.+.....+.+++. .+++||+||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998774 445556665555566667764 4679999999887653 22222 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|+|+++.+... .+...+.+. +.|+++|+||+|+.+.+. +. .+.+++.+..+. +++++||++|
T Consensus 79 VvDat~ler~l----~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERNL----YLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhhH----HHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence 99998754321 222233333 799999999999865432 22 345777888886 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIKVV 177 (211)
Q Consensus 164 ~~v~~lf~~l~~~~ 177 (211)
+|++++++.+.+..
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=4.9e-20 Score=147.08 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=120.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc--c-------cccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS--R-------LRPLSY 75 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--~-------~~~~~~ 75 (211)
..|+++|-||+|||||.|||.+.+ +..++++++.+.........+.. |.++||+|.+... . .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 679999999999999999999987 78899999999998888888855 6699999976433 1 123357
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
..||++|||+|.....+-.+ ....+.++.. +.|+++|+||+|-... ++...-.-+++.-..
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~~--~kpviLvvNK~D~~~~---------------e~~~~efyslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRRS--KKPVILVVNKIDNLKA---------------EELAYEFYSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEEcccCchh---------------hhhHHHHHhcCCCCc
Confidence 89999999999988766665 4555666643 7999999999996532 222222345555589
Q ss_pred EEecCCCCCCHHHHHHHHHHHHc
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+.+||.+|.|+.+|.+.+++.+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 99999999999999999999984
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1e-19 Score=149.79 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=103.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVA 48 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~ 48 (211)
|++..+++|+++|++++|||||+++|+... +... ..+++.+.....+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 788999999999999999999999998432 1110 11222222222233
Q ss_pred ECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 49 VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS--RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
. ..+.+.+|||||++.|.......+..+|++++|+|+++ ...-+. ..+...+... ...|+++++||+|+....
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~--~~~~~~~~~~-~~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 81 T--DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT--REHVFLARTL-GINQLIVAINKMDAVNYD 155 (425)
T ss_pred c--CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch--HHHHHHHHHc-CCCeEEEEEEcccccccc
Confidence 3 34678899999998887655556789999999999987 322222 1222222222 234699999999997521
Q ss_pred cccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHHH
Q 028239 127 GYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~lf 170 (211)
.. ......++..++.+..+. .+++++||++|+|+++++
T Consensus 156 ~~------~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 156 EK------RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HH------HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 10 000123455556655553 479999999999998754
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.1e-19 Score=129.44 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=103.6
Q ss_pred EECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc-------ccccCCcEE
Q 028239 11 TVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP-------LSYRGADIF 81 (211)
Q Consensus 11 viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~-------~~~~~~d~~ 81 (211)
++|++|+|||||++++.+.... ....++............. ...+.+||+||...+..... ..++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987543 2233333333333333331 35677999999877654433 367899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH--HHHHHHHhCCceEEEec
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ--GEELRKQIGAAAYIECS 159 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s 159 (211)
++|+|.++..+.... . +...... .+.|+++|+||+|+..... ..... ...........+++++|
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence 999999998877775 3 3333332 4899999999999876432 11110 11222233335899999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 028239 160 SKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~ 176 (211)
|.++.|+.++++++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999999875
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=125.21 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=119.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCC--------CCCC---ce-eeeeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPT--------DYIP---TV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~--------~~~~---t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 69 (211)
..-...||+|.|+.++||||+++.+....... .+.. |+ ...+- .+.+++ ...+.++|||||++|+-
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g-~~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG-SIELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc-ceEEcC-cceEEEecCCCcHHHHH
Confidence 34567899999999999999999998876411 1111 11 11111 122222 24566999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
+|+..++.+.++++++|.+.+..+. . ...++.+....+ +|++|++||.|+.+. .+.+.++++...
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~-a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~ 148 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFH-A-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKL 148 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchH-H-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHh
Confidence 9999999999999999999998883 3 566666665532 999999999999986 456676666666
Q ss_pred hC-CceEEEecCCCCCCHHHHHHHHHHH
Q 028239 150 IG-AAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 150 ~~-~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.. ..+.++.+|.+++++.+.++.+...
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHHhh
Confidence 52 3499999999999999999888876
No 198
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=5e-20 Score=127.14 Aligned_cols=136 Identities=19% Similarity=0.232 Sum_probs=100.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC----cCccccccccccCCcEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ----EDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~----~~~~~~~~~~~~~~d~~i~ 83 (211)
||+++|+.|+|||||+++|.+....- .-|. .+.+.+ .++||||. ..|.+.......+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQ------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--Cccc------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 79999999999999999999876422 2221 111221 26999994 2233323334568999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|.|++++.+.-. ..+...+ +.|+|-|+||+|+..+. ...+.+.++.+.-|...+|++|+.+|
T Consensus 70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 999999765433 2333333 68999999999998433 46678888999999988999999999
Q ss_pred CCHHHHHHHHH
Q 028239 164 QNVKAVFDTAI 174 (211)
Q Consensus 164 ~~v~~lf~~l~ 174 (211)
+|+++|.++|-
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999998874
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.1e-19 Score=151.49 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=104.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----eeeeeeEEEEEC-------------CeEEEEEEEeCCCCcCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVAVD-------------GSIVNLGLWDTAGQEDY 67 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~-------------~~~~~l~l~D~~G~~~~ 67 (211)
+..-|+++|++++|||||+++|.+..+.....+. .+..+....... .....+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4567999999999999999999988765443331 122111110000 01123789999999999
Q ss_pred cccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-----ccc--cCCcc
Q 028239 68 SRLRPLSYRGADIFVLAFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-----ADH--VGSNV 137 (211)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~--~~~~~ 137 (211)
..++..+++.+|++++|+|+++ +.+++.+ ..+... +.|+++++||+|+....... .+. .....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9998889999999999999987 4444443 223332 78999999999986421100 000 00000
Q ss_pred cc-------HHHHHHHH-------------HHhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 138 IT-------TAQGEELR-------------KQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 138 ~~-------~~~~~~~~-------------~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+. .....++. ...+..+++++||++|+|+++++.++....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 00001111 111235899999999999999999887653
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=8.1e-19 Score=152.08 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=113.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc----------cc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP----------LS 74 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~----------~~ 74 (211)
.++|+++|.+|+|||||+|++.+.. ...++.+++.+.....+..++ ..+.+||+||..++..... .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 5789999999999999999999865 344555655555555555555 5567999999887654211 12
Q ss_pred --ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 75 --YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 75 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
...+|++++|+|+++.+... .+...+.+. +.|+++++||+|+.+.+. + ....+++.+.++.
T Consensus 81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC
Confidence 24799999999998865432 233444444 799999999999875432 3 3456777888887
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
+++++||.+++|++++++.+.+..
T Consensus 144 -pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 144 -PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -CEEEEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999999998765
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=8.4e-19 Score=140.06 Aligned_cols=161 Identities=20% Similarity=0.219 Sum_probs=125.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc----------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP---------- 72 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~---------- 72 (211)
..+||+++|-|++|||||+|++++.. +.....+|+.+.....+.+++..+. ++||+|-.+-....+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 46999999999999999999999876 7888899999999999999997666 999999544322221
Q ss_pred -ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH----HHHHH
Q 028239 73 -LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ----GEELR 147 (211)
Q Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~ 147 (211)
..+..+|.+++|+|++.+.+-++. .....+.+. +.++++|+||.|+.+... ...++ .....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l 320 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL 320 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence 245789999999999999888884 555666555 899999999999877532 22222 33334
Q ss_pred HHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 148 KQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 148 ~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
...+..+.+.+||+++.++.++|+.+.+......
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 4445579999999999999999999888775543
No 202
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.3e-19 Score=142.08 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=118.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc--------cc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL--------SY 75 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~--------~~ 75 (211)
-++++++|.||+|||||+|.|++.. ++.+.++|+++.....+.++| +.+.+.||+|-.......+. .+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 4799999999999999999999876 889999999999999999999 55669999998765543322 46
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
.+||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+..... .. .. +.....++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~------------~~---~~-~~~~~~~~ 353 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE------------LE---SE-KLANGDAI 353 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc------------cc---hh-hccCCCce
Confidence 789999999999997444443 2222 2234799999999999987532 11 11 11122268
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
+.+|++++.|++.+.+.|.+.+...
T Consensus 354 i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 354 ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEEEecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999999988776
No 203
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.81 E-value=3.2e-19 Score=120.18 Aligned_cols=155 Identities=20% Similarity=0.257 Sum_probs=119.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|-.++|||||++.|.+.... ...+|.+-... .+.++ .++.+++||.+|+...+..|..++.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k-~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTK-KVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceE-EEeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 57899999999999999999999876643 33444443333 33333 34889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-------CceE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-------AAAY 155 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 155 (211)
|+|.+|...|+++-..+.+.+.... ...|+.+..||.|+...-. .+ +.+.+.+ ..++
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------------~e---eia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------------VE---EIALKLNLAGLRDRSWHI 156 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------------hH---HHHHhcchhhhhhceEEe
Confidence 9999999999998777777776554 7899999999999865421 11 2222221 2378
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~ 176 (211)
-++||..++|+..-.+|+...
T Consensus 157 q~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred eeCccccccCccCcchhhhcC
Confidence 889999999998888877654
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=4.9e-19 Score=145.70 Aligned_cols=159 Identities=15% Similarity=0.077 Sum_probs=102.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEEEEC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------------------YIPTVFDNFSANVAVD 50 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~ 50 (211)
+...++|+++|++++|||||+++|+.. .+... ..+.+.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456789999999999999999999852 22110 0011111122223333
Q ss_pred CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239 51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENV-LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL 129 (211)
Q Consensus 51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 129 (211)
.+.+.|||+||++.|.......+..+|++++|+|+++.+++... ...+.. +.......|++||+||+|+.+....
T Consensus 84 --~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~~~~- 159 (426)
T TIGR00483 84 --KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNYDEE- 159 (426)
T ss_pred --CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCccHH-
Confidence 36788999999998876666667899999999999988543211 011111 2222234679999999999642110
Q ss_pred ccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHHH
Q 028239 130 ADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~lf 170 (211)
.......+..++++..+. .+++++||++|.|+.+++
T Consensus 160 -----~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 -----EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred -----HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 001223556667776653 489999999999998744
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=3e-18 Score=144.93 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=112.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Ccee-eeeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 69 (211)
..-+|+++|+.++|||||+++|+. +.+..... .+.+ +.......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999997 33433211 0111 11223333444457888999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
.+..+++.+|++++|+|+++....+.. ..| ..+... ++|.++++||+|+...+. .-..++...+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l-~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVT-KKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH-HHH-HHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence 999999999999999999886544443 333 333333 789999999999875431 0111223333222
Q ss_pred hC------CceEEEecCCCCC----------CHHHHHHHHHHHHcCCc
Q 028239 150 IG------AAAYIECSSKTQQ----------NVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 150 ~~------~~~~~~~sa~~~~----------~v~~lf~~l~~~~~~~~ 181 (211)
.+ ..|++.+||.+|. ++..|++.++..+..+.
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 11 1479999999998 68999999998886553
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=1.5e-18 Score=146.84 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=109.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCCCCc---------e---eee-eeEEEEECCeEEEEEEEeCCCCcCcccccc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN--KFPTDYIPT---------V---FDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRP 72 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t---------~---~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 72 (211)
+|+++|+.++|||||+++|+.. .+....... . +.. ......+....+.+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 232211000 0 111 112222222337788999999999998888
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG- 151 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (211)
.+++.+|++++|+|+.+...-+. ..|+..+... ++|+++|+||+|+...+. .....+...+...++
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA 149 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence 89999999999999987543333 4555555544 789999999999865321 011233333332211
Q ss_pred -----CceEEEecCCCCC----------CHHHHHHHHHHHHcCC
Q 028239 152 -----AAAYIECSSKTQQ----------NVKAVFDTAIKVVLQP 180 (211)
Q Consensus 152 -----~~~~~~~sa~~~~----------~v~~lf~~l~~~~~~~ 180 (211)
..+++.+||++|. |+..+|+.+++.+...
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 1389999999995 7999999999988655
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=5.9e-18 Score=143.16 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=103.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----eeeeeeEEEEE---CCeEE----------EEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVAV---DGSIV----------NLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~---~~~~~----------~l~l~D~~G~~~ 66 (211)
.++.-|+++|++++|||||+++|.+..+.....+. .+..+...... .+..+ .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 46678999999999999999999877654443322 12111110000 01111 167999999999
Q ss_pred ccccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc-----cccccCC--c
Q 028239 67 YSRLRPLSYRGADIFVLAFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY-----LADHVGS--N 136 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~~~--~ 136 (211)
|..++...+..+|++++|+|+++ +++++.+ . .+.. .++|+++++||+|+...-.. ....... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888899999999999987 5555544 2 2222 37999999999998521100 0000000 0
Q ss_pred cccH------HHHHHHHHH--------------hCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 137 VITT------AQGEELRKQ--------------IGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 137 ~~~~------~~~~~~~~~--------------~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.+.. .+....... .+..+++++||.+|.|++++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0000 000011111 123589999999999999999887643
No 208
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=4.2e-18 Score=129.44 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=107.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------CCCCCCce--------eeee-eEEEEECCeEEEEEEEeCCCCcCcccc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF--------PTDYIPTV--------FDNF-SANVAVDGSIVNLGLWDTAGQEDYSRL 70 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~--------~~~~~~t~--------~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~ 70 (211)
+|+++|++|+|||||+++|+...- ......+. +... .....+....+.+.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986321 11000000 0011 111222223367889999999999888
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc----------------cc---
Q 028239 71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL----------------AD--- 131 (211)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~--- 131 (211)
+..+++.+|++++|+|+++...... ..+...+... +.|+++++||+|+....... +.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8889999999999999998765443 4555555544 79999999999986421100 00
Q ss_pred ------c----------------------cCCccccHHHHHHHH----HHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 132 ------H----------------------VGSNVITTAQGEELR----KQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 132 ------~----------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
. .+-..++.++...-. ..-...|.+..||.++.|+..|++.+.+.+-
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 001123333322211 1223468888999999999999999998764
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=4.8e-18 Score=125.42 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=95.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--------CCCC---------CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK--------FPTD---------YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~--------~~~~---------~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 68 (211)
+++|+++|++++|||||+++|+... .... ..++.... ....+......+.++||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence 5899999999999999999998641 0000 11111111 112222233566799999998877
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR 147 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
......+..+|++++|+|+.....-+. ...+..+... +.| +|+++||+|+..... ......+++..+.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l 148 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELL 148 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHH
Confidence 766667889999999999987644333 2333444443 566 789999999864221 0011223455555
Q ss_pred HHhCC----ceEEEecCCCCCCH
Q 028239 148 KQIGA----AAYIECSSKTQQNV 166 (211)
Q Consensus 148 ~~~~~----~~~~~~sa~~~~~v 166 (211)
...+. .+++.+||++|.|+
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 55543 58999999999985
No 210
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=1.9e-18 Score=129.67 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=79.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-----------CCCce------eeee-e--EEEEE---CCeEEEEEEEeCCCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTD-----------YIPTV------FDNF-S--ANVAV---DGSIVNLGLWDTAGQ 64 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~-----------~~~t~------~~~~-~--~~~~~---~~~~~~l~l~D~~G~ 64 (211)
+|+++|++++|||||+++|+....... +..+. +..+ . ..+.. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987543221 11111 0111 0 11111 355688999999999
Q ss_pred cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
..|...+..++..+|++++|+|+++..+... ..++...... +.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence 9998877888999999999999988776654 3444443332 68999999999975
No 211
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.4e-19 Score=119.85 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=119.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
++..+|+++|-.|+|||++.-++.-+..... .||.+.... .+..++..+++||..|+...+..|.-++.+.|++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 4789999999999999999988877665443 333332222 222355889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHH-----HHHHHhCCceEEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE-----ELRKQIGAAAYIE 157 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 157 (211)
|+|.+|.+........++..+.+.. .+..++|++||.|.... ....|+. +-.++.- ..+++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~------------~t~~E~~~~L~l~~Lk~r~-~~Iv~ 158 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA------------LTRSEVLKMLGLQKLKDRI-WQIVK 158 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh------------hhHHHHHHHhChHHHhhhe-eEEEe
Confidence 9999998877766556666666544 56778899999997653 2333322 1222222 48999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcC
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+||.+|+|+++..+|+.+-+.+
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccccCCcHHHHHHHHHHhc
Confidence 9999999999999999988754
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=4.2e-18 Score=122.60 Aligned_cols=154 Identities=17% Similarity=0.052 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCc----------cccccccc-
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDY----------SRLRPLSY- 75 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~~~~~- 75 (211)
.|+++|++|+|||||++.+.++.+.....++..... ...+..++ .+.+||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996554444444432222 22223333 6779999995432 22222233
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-HhCC
Q 028239 76 --RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-QIGA 152 (211)
Q Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (211)
...+++++++|.+...+... ......+... +.|+++++||+|+..... ............+ ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID 145 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence 34678899999876643222 1222333333 689999999999854321 0011112222222 2333
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHH
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.+++++||+++.++.+++++|.+.
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHh
Confidence 589999999999999999999875
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=8e-18 Score=143.07 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=102.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCC-CCceeeeeeEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK---FPTDY-IPTVFDNFSANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~---~~~~~-~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
-|.++|++++|||||+++|.+.. ++.+. .+.+.+.....+.. ++ ..+.+||+||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 47899999999999999998643 22221 12221111112222 33 34679999999998776666788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC--ceEEEec
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA--AAYIECS 159 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s 159 (211)
+|+|+++...-+.. ..+..+... ++| ++||+||+|+.+... .....++..++....+. .+++++|
T Consensus 80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 99999874322221 222333333 455 579999999875321 00112344455554442 4899999
Q ss_pred CCCCCCHHHHHHHHHHHHcC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~ 179 (211)
|++|.|++++++.|.+....
T Consensus 148 A~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 148 ATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCCCHHHHHHHHHhhcc
Confidence 99999999999999876543
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.77 E-value=3.1e-18 Score=139.90 Aligned_cols=163 Identities=16% Similarity=0.093 Sum_probs=103.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----e-eee-----------------eeEEEEECC------eEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-----V-FDN-----------------FSANVAVDG------SIV 54 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t-----~-~~~-----------------~~~~~~~~~------~~~ 54 (211)
...++|+++|++++|||||+++|.+... +.+... + ... +......++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 5679999999999999999999965321 111000 0 000 000000011 135
Q ss_pred EEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 55 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
.+.+||+||+++|...+......+|++++|+|++++. .-+.. +.+ ..+... ...|+++++||+|+.+...
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l-~~l~~~-gi~~iIVvvNK~Dl~~~~~------ 151 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHL-MALEII-GIKNIVIVQNKIDLVSKEK------ 151 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHH-HHHHHc-CCCeEEEEEEccccCCHHH------
Confidence 6889999999999887777778899999999998643 22221 222 223222 2356899999999875321
Q ss_pred CCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 134 GSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
.....++..++.... ...+++++||++|+|+++++++|...+.
T Consensus 152 --~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 --ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred --HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 001123334444433 1248999999999999999999998764
No 215
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=3.6e-18 Score=127.75 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEEECCeEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVAVDGSIVN 55 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 55 (211)
||+++|++++|||||+++|+... .... ..+++.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 68999999999999999997532 2100 01111111122233344 45
Q ss_pred EEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCC
Q 028239 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGS 135 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 135 (211)
+.+|||||+++|...+...++.+|++++|+|++++..-+.. .....+... ...++|+|+||+|+...... .
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~ 149 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------V 149 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------H
Confidence 66999999988766556678899999999999876432221 222222222 23457889999998642210 0
Q ss_pred ccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHH
Q 028239 136 NVITTAQGEELRKQIGA--AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~l 169 (211)
......+..++.+.++. .+++.+||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00112344555666663 35899999999998753
No 216
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=2.1e-17 Score=124.48 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=97.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-----------------------eeee----------------EEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-----------------------DNFS----------------ANVA 48 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-----------------------~~~~----------------~~~~ 48 (211)
||+++|+.++|||||+++|..+.+.+....... .... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655331110000 0000 0111
Q ss_pred ECCeEEEEEEEeCCCCcCccccccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 49 VDGSIVNLGLWDTAGQEDYSRLRPLSY--RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
.. ...+.++|+||+++|.......+ ..+|++++|+|++....-.+ ..++..+... ++|+++|+||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence 22 25677999999988865444334 36899999999987655443 3455555554 78999999999986432
Q ss_pred cccccccCCccccHHHHHHHHHH-------------------------hCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 127 GYLADHVGSNVITTAQGEELRKQ-------------------------IGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
.. .....+..++.+. ....|+|.+||.+|+|++++...|..
T Consensus 155 ~~--------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 IL--------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HH--------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 10 0111112222221 11348999999999999999887753
No 217
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=5.8e-18 Score=128.36 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=109.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc------------c
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS------------R 69 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------------~ 69 (211)
++.+.|+|+|.|++|||||.|.+.+.+..... ..|+.-.....+.-+. .++.|+||||--.-. .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhh
Confidence 57899999999999999999999999854433 3333444444444455 566699999932111 1
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc---cCCccccHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH---VGSNVITTAQGEEL 146 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~ 146 (211)
.....+..||.+++|+|+++....-. ...+..+..+ .++|-++|+||.|...+.....+. ..-..++. ...++
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~kl~v 223 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-LKLEV 223 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccch-hhhhH
Confidence 12234678999999999997433222 3344444433 378999999999976554322110 00011110 11122
Q ss_pred HHHhCC----------------ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 147 RKQIGA----------------AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 147 ~~~~~~----------------~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.++... ..+|.+||++|+||+++-++|+..+....
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 222222 23799999999999999999998886543
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.76 E-value=7.8e-18 Score=137.51 Aligned_cols=166 Identities=16% Similarity=0.105 Sum_probs=103.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cce-eeee-----------------eEEEEEC--C----e
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PTV-FDNF-----------------SANVAVD--G----S 52 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----~t~-~~~~-----------------~~~~~~~--~----~ 52 (211)
.+..+++|+++|+.++|||||+.+|.+.. .+... +.+ ...+ ......+ + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 35678999999999999999999996531 11111 111 1000 0000001 0 1
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD 131 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 131 (211)
...+.|||+||++.|..........+|++++|+|++++. .-+.. ..+ ..+... ...|+++|+||+|+.+...
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~---- 156 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHL-MALDII-GIKNIVIVQNKIDLVSKER---- 156 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHc-CCCcEEEEEEeeccccchh----
Confidence 257889999999888765555566789999999998643 22221 222 222222 2346899999999975421
Q ss_pred ccCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 132 HVGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.....++...+.+.. ...+++++||++|.|++++++.|...+..
T Consensus 157 ----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 ----ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ----HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 001123344444432 12489999999999999999999887643
No 219
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.75 E-value=2.9e-18 Score=139.62 Aligned_cols=164 Identities=25% Similarity=0.392 Sum_probs=123.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
+.+||+++|+.|+||||||..+....|++..++-.. ......+..++ +...++|++..+.-+.....-++.||++.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 568999999999999999999999998776554442 22222233333 446699998766555444556889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHH-HHHHHHHh-CCceEEEe
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ-GEELRKQI-GAAAYIEC 158 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 158 (211)
||+.+++.+++.+..+|+..+++.. .++|+|+||||+|...... .+.+. ..-+...+ .+...++|
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHhh
Confidence 9999999999999999999999988 7999999999999877653 11111 11222222 11256899
Q ss_pred cCCCCCCHHHHHHHHHHHHcCC
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
||++..++.++|..-.++++.+
T Consensus 156 SA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhHhhhhhhhheeecc
Confidence 9999999999999888887654
No 220
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=1.1e-17 Score=125.70 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=102.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCcccc-----ccccccCCcEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRL-----RPLSYRGADIF 81 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----~~~~~~~~d~~ 81 (211)
||+++|+.++||||+.+.++++..+.+......+. ....-......+.+++||+||+..+... ....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999987655543222111 1111111222367889999999765433 35578999999
Q ss_pred EEEEECCChhhHHHHHHHHHH---HHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC--CceEE
Q 028239 82 VLAFSLISRASYENVLKKWMP---ELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG--AAAYI 156 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 156 (211)
|+|+|+.+.+-.+++ ..+.. .+.+..|++.+-|.++|+|+..+.... .......+...+.+...+ ...++
T Consensus 81 IyV~D~qs~~~~~~l-~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDL-AYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp EEEEETT-STCHHHH-HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred EEEEEcccccHHHHH-HHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceEEE
Confidence 999999855544444 44444 444556899999999999986532100 000011122233334444 24788
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.||.-+ +.+.++|..+++.++.+.
T Consensus 156 ~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 156 LTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp EE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred eccCcC-cHHHHHHHHHHHHHcccH
Confidence 888886 689999999999988643
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.75 E-value=3.4e-17 Score=133.32 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=105.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC------------C-----CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP------------T-----DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
...+++|+++|++++|||||+++|++.... + ...+.+.+. ....+......+.++|+||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 346799999999999999999999863110 0 011111111 112232233556799999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGE 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+|.......+..+|++++|+|+++...-+.. ..+..+... ++| +|+++||+|+.+... ......++..
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~ 155 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence 8876666667889999999999875433332 222334433 677 678999999874321 0001123455
Q ss_pred HHHHHhCC----ceEEEecCCCCC--------CHHHHHHHHHHHHc
Q 028239 145 ELRKQIGA----AAYIECSSKTQQ--------NVKAVFDTAIKVVL 178 (211)
Q Consensus 145 ~~~~~~~~----~~~~~~sa~~~~--------~v~~lf~~l~~~~~ 178 (211)
.+....+. .+++.+||++|. ++.++++.+.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 56555553 489999999983 57788888877664
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.1e-17 Score=125.95 Aligned_cols=151 Identities=15% Similarity=0.046 Sum_probs=91.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC--------------C----------------CCCceeeeeeEEEEECCeEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK--FPT--------------D----------------YIPTVFDNFSANVAVDGSIVN 55 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~--~~~--------------~----------------~~~t~~~~~~~~~~~~~~~~~ 55 (211)
+|+++|++++|||||+.+|+... ... . ..+++.+.....+..++ +.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 58999999999999999996421 100 0 01111111222333444 66
Q ss_pred EEEEeCCCCcCccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-------SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY 128 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 128 (211)
+.+||+||+..|...+...++.+|++++|+|+++.. ..+.. ..+ .... .....|+++++||+|+......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEcccccccccc
Confidence 789999999877766666678899999999998842 11222 222 2222 2224689999999999732100
Q ss_pred cccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHH
Q 028239 129 LADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVK 167 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~ 167 (211)
.... .-..++...+.+..+. .+++++||++|.|++
T Consensus 156 ---~~~~-~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 ---EERY-DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ---HHHH-HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 0000 0011222333444432 479999999999987
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=6.4e-17 Score=119.99 Aligned_cols=171 Identities=12% Similarity=0.123 Sum_probs=99.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeE-EEEEC-CeEEEEEEEeCCCCcCccccc-----cccccC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSA-NVAVD-GSIVNLGLWDTAGQEDYSRLR-----PLSYRG 77 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~-~~~~~-~~~~~l~l~D~~G~~~~~~~~-----~~~~~~ 77 (211)
+++|+++|.+|+|||||+|.|++.........+.+ ..... ...+. .....+.+||+||........ ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 47999999999999999999998654332211111 01110 00111 112357799999975432221 223677
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-cccc-CCccccHHH---HHHHHHHh--
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-ADHV-GSNVITTAQ---GEELRKQI-- 150 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~-~~~~~~~~~---~~~~~~~~-- 150 (211)
+|.+++|.+ + .+......|+..+... +.|+++|+||+|+....... .... ....+..+. ........
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899888743 2 2333335666777665 78999999999985432110 0000 000111111 12222221
Q ss_pred CCceEEEecCC--CCCCHHHHHHHHHHHHcCCch
Q 028239 151 GAAAYIECSSK--TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 151 ~~~~~~~~sa~--~~~~v~~lf~~l~~~~~~~~~ 182 (211)
...++|.+|+. .+.++..+.+.++..+.+.++
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 22478999998 579999999999998876443
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=7.1e-17 Score=131.54 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=103.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-------CC-----CC-----CCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-------FP-----TD-----YIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-------~~-----~~-----~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
..+++|+++|++++|||||+++|+... +. +. ..+.+.+. ....+......+.|+||||+++
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 467899999999999999999998621 10 00 11111111 1122222334567999999988
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
|.......+..+|++++|+|+.+...-+.. .++..+... ++|.+ +++||+|+..... .......+...
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~ 156 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence 776666677899999999999875443332 333334333 67865 6799999964321 00112335566
Q ss_pred HHHHhCC----ceEEEecCCCCC----------CHHHHHHHHHHHHc
Q 028239 146 LRKQIGA----AAYIECSSKTQQ----------NVKAVFDTAIKVVL 178 (211)
Q Consensus 146 ~~~~~~~----~~~~~~sa~~~~----------~v~~lf~~l~~~~~ 178 (211)
+.+.++. .+++++||.+|. ++.++++.|...+.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 6666542 589999999984 67778887777653
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=6.3e-17 Score=131.87 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=95.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC-------C-----CC-----CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-------F-----PT-----DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------~-----~~-----~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
..++++|+++|+.++|||||+++|+... + .+ ...+.+.+. ..+.++.....+.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 3567999999999999999999997421 0 00 001111111 122333334567799999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCcccCccccccccCCccccHHHHH
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLREDRGYLADHVGSNVITTAQGE 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+|..........+|++++|+|+++....+.. ..+..+... ++|.+ +++||+|+.+... ......++..
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~ 155 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence 8876555567789999999999885443332 222333333 67755 6899999875321 0001234566
Q ss_pred HHHHHhCC----ceEEEecCCCCC
Q 028239 145 ELRKQIGA----AAYIECSSKTQQ 164 (211)
Q Consensus 145 ~~~~~~~~----~~~~~~sa~~~~ 164 (211)
.+.+.++. .+++++||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 67776653 589999999874
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=7.8e-17 Score=121.00 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=78.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc------e------eeee---eEEEEEC--------CeEEEEEEEeCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK--FPTDYIPT------V------FDNF---SANVAVD--------GSIVNLGLWDTA 62 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t------~------~~~~---~~~~~~~--------~~~~~l~l~D~~ 62 (211)
+|+++|+.++|||||+.+|+... +.....++ . +... ....... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998543 11110000 0 0000 0111222 346889999999
Q ss_pred CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
|++.|.......++.+|++++|+|++++.+.+.. ..+.. ... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHH-HHH--cCCCEEEEEECCCcc
Confidence 9999999888899999999999999988776653 33332 222 268999999999976
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.2e-16 Score=130.69 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=122.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------ccccc--c
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSY--R 76 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~ 76 (211)
..+|+++|.||+|||||.|++.+.. ...++++.+.+.........+.. +++.|.||--..... ...++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4679999999999999999999977 77899999999988888888866 559999996544422 12222 4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.+|+++-|.|+++-+..-.+ --++.+. +.|++++.|+.|....+. ..-+..++.+.++. |.+
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence 67999999999987754433 1223333 899999999999887653 34455778888998 999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.++|++|+|++++...+.+....+.
T Consensus 143 ~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 143 PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999987665544
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=1.4e-16 Score=130.32 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=96.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC--C---------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP--T---------------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
+..+++|+++|++++|||||+++|++..-. . ...+.+.+.....+..++ ..+.+.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence 456799999999999999999999864210 0 001111111111222233 456699999998
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGE 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+|.......+..+|++++|+|+.....-+.. ..+..+... ++| +|+++||+|+.+... ......++..
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~ 155 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVR 155 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence 8776666667899999999999876544432 333444433 678 778999999975321 0001223555
Q ss_pred HHHHHhCC----ceEEEecCCCCCC
Q 028239 145 ELRKQIGA----AAYIECSSKTQQN 165 (211)
Q Consensus 145 ~~~~~~~~----~~~~~~sa~~~~~ 165 (211)
.+.+..+. .+++.+||.+|.+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhccc
Confidence 56665542 5899999999874
No 229
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.69 E-value=8.9e-16 Score=117.13 Aligned_cols=154 Identities=16% Similarity=0.245 Sum_probs=111.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc-------ccccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP-------LSYRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~-------~~~~~~d 79 (211)
.|.++|-|++|||||++++.+.+ -...|..|+......++.+++-. .+.+-|+||--.-.++.. ..++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 67899999999999999999876 45677777644444455555432 277999999543332221 1356799
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 80 IFVLAFSLISR---ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
.++||+|++.+ .-++.+ +.+..+++.+. .+.|.++|+||+|+.+.+ .....++++.+...
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~~ 342 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQNP 342 (366)
T ss_pred eEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCCC
Confidence 99999999988 666666 55555555443 689999999999986432 22245666776664
Q ss_pred eEEEecCCCCCCHHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.++++||+.++++.++++.|.+.
T Consensus 343 ~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred cEEEeeeccccchHHHHHHHhhc
Confidence 59999999999999999887653
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=4.2e-16 Score=120.41 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=77.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC---------------CCCCce---e-eeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FPT---------------DYIPTV---F-DNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~~---------------~~~~t~---~-~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
-+|+++|++|+|||||+++|+... ... ++.+.. + ........+....+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998531 110 000000 0 0111222333344778899999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+|.......++.+|++++|+|+++...... ..+....... ++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 888766667899999999999987644332 3344444333 7999999999998654
No 231
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=4.7e-17 Score=117.27 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=76.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc---cccCCcEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL---SYRGADIF 81 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~---~~~~~d~~ 81 (211)
+.-.|+++|+.|+|||+|..+|..+.......+. .......+ -+...-.+.++|+|||++.+..... +...+.++
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 3457999999999999999999999766655544 22222111 1122234669999999998863333 47789999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCc
Q 028239 82 VLAFSLIS-RASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~ 126 (211)
|||+|.+. ...+.++.+.+++.+.... ..+|++|++||.|+....
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999974 4556666577777777554 589999999999987653
No 232
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.2e-15 Score=123.98 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=113.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.+++=|+++|+..-|||||+..+-.........+-. .....+.+.++. ..-.+.|+|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 355669999999999999999999888665544443 233344555541 224467999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-------C-
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-------A- 152 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~- 152 (211)
++|+++++.--=+.. +.+.+.. .+.|++|+.||+|.++.+. .....-.++++ .
T Consensus 83 ILVVa~dDGv~pQTi-----EAI~hak~a~vP~iVAiNKiDk~~~np-------------~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 83 ILVVAADDGVMPQTI-----EAINHAKAAGVPIVVAINKIDKPEANP-------------DKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred EEEEEccCCcchhHH-----HHHHHHHHCCCCEEEEEecccCCCCCH-------------HHHHHHHHHcCCCHhhcCCc
Confidence 999999985432222 2222222 4999999999999986432 22222122222 1
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
..++++||++|.|+++|+..+.-.....
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999887766443
No 233
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.5e-16 Score=124.33 Aligned_cols=164 Identities=20% Similarity=0.136 Sum_probs=119.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCC--------------CCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPT--------------DYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~--------------~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
++.-++.|+-+..-|||||..+|+... ... ...+.+ .......+..++..+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 344578999999999999999998532 111 011111 111122333457889999999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
|.......+..|+++|+|+|+......+.+ ..++..++. +..+|.|+||+|++..+. .--..+..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l 204 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL 204 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence 999999999999999999999998888877 444444543 788999999999988642 0112223333
Q ss_pred HHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 147 RKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 147 ~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
...... +.+.+||++|.|++++++.+++.+..+.
T Consensus 205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 333344 7899999999999999999999987654
No 234
>COG2262 HflX GTPases [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=120.74 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=115.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC---------ccccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED---------YSRLRPL 73 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~ 73 (211)
+....|.++|..++|||||+|+|.+.. +..+...++-+.....+.+.+ ...+.+-||.|.-+ |++..+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 456789999999999999999999765 556666677667777777764 23355899999432 2222221
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
..++|.++.|+|++++.....+ ....+.+.+.. ..+|+|+|.||.|+..+. ...........
T Consensus 269 -~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~~ 331 (411)
T COG2262 269 -VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGSP 331 (411)
T ss_pred -hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcCC
Confidence 4689999999999999776666 66667776654 579999999999976542 11122222222
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
..+.+||++|.|++.|++.|.+.+...
T Consensus 332 -~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 332 -NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred -CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 578999999999999999999988643
No 235
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.67 E-value=1.2e-15 Score=127.83 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=78.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc--CCCC---------------CCCCCce---eeee-eEEEEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS--NKFP---------------TDYIPTV---FDNF-SANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~--~~~~---------------~~~~~t~---~~~~-~~~~~~~~~~~~l~l~D~~G 63 (211)
+.-+|+|+|++++|||||.++|+. +... .++.+.. +..+ .....+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 345999999999999999999974 1110 0000000 1111 11122333347788999999
Q ss_pred CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
+..|.......++.+|++++|+|+++...... ..++...... ++|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence 99988777778899999999999987643332 3444444433 899999999999764
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=1.6e-15 Score=123.55 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=101.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC---C--------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP---T--------------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~---~--------------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
..+++|+++|++++|||||+++|+..... . ...+.+.+.. ...+......+.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHH
Confidence 56789999999999999999999863110 0 0111111111 122222234567999999988
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
|.......+..+|++++|+|+..+..-+. ..++..+... +.|.+ +++||+|+..... .......+...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence 77666667889999999999987644333 2333444444 68876 6899999864221 00011223444
Q ss_pred HHHHhCC----ceEEEecCCCCC----------CHHHHHHHHHHHH
Q 028239 146 LRKQIGA----AAYIECSSKTQQ----------NVKAVFDTAIKVV 177 (211)
Q Consensus 146 ~~~~~~~----~~~~~~sa~~~~----------~v~~lf~~l~~~~ 177 (211)
+....+. .+++.+||.++. ++.++++.|...+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 5544432 589999999875 4566776666654
No 237
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=7.7e-16 Score=133.67 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=82.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--------CCC-----CCCCc---eeeee---eEEEEECCeEEEEEEEeCCC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--------FPT-----DYIPT---VFDNF---SANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--------~~~-----~~~~t---~~~~~---~~~~~~~~~~~~l~l~D~~G 63 (211)
.++..+|+|+|+.++|||||+++|+... ... ++.+. .+... ...+..++ +.+++|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCC
Confidence 3456799999999999999999998532 000 00000 00001 11233343 6788999999
Q ss_pred CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
+.+|...+..+++.+|++++|+|+++....... ..| ..+... ++|+++++||+|+..
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCC
Confidence 999888888899999999999999988776654 444 334433 799999999999865
No 238
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=9.1e-16 Score=118.68 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=76.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--C------CC-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK--F------PT-----------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~--~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 68 (211)
+|+++|++++|||||+++|+... . .+ ...+.........+..++ +.+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 58999999999999999997421 1 00 000111111112333444 567799999998888
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..+...++.+|++++|+|+.+...-+. ..++..+... ++|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 888888999999999999987654433 2333444443 789999999999875
No 239
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2e-15 Score=115.97 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=112.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC-cCc----cccccc---cc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ-EDY----SRLRPL---SY 75 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~-~~~----~~~~~~---~~ 75 (211)
....|+|.|.||+|||||++++...+ -...|+.|+.......+..++ ..+|++||||- ++- +..... .+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 35689999999999999999999876 456788887666666666665 45779999993 211 111100 12
Q ss_pred -cCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 76 -RGADIFVLAFSLI--SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 76 -~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
.-.++++|++|.+ +.-+.+.. ..++..+..... .|+++|.||.|..+... .+++.......+.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~------------~~~~~~~~~~~~~ 310 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK------------LEEIEASVLEEGG 310 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH------------HHHHHHHHHhhcc
Confidence 3468899999985 45667777 677777777664 89999999999886532 2333333444444
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.....+++..+.+++.+-..+...+.+
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhhc
Confidence 356788888888999888777776544
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=2.8e-15 Score=123.39 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=99.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC------CCC-----------CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN------KFP-----------TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
..+++|+++|++++|||||+++|.+. ... +...+.+.+.... .++.....+.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHV--EYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEE--EEcCCCeEEEEEECCCccc
Confidence 46789999999999999999999632 100 0011111221122 2222335667999999988
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
|.......+..+|++++|+|+++...-++ ...+..+... ++| +|+++||+|+.+... .......+..+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~~ 205 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELRE 205 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHHH
Confidence 76655555678999999999987644333 2333344444 688 578899999875321 00011123334
Q ss_pred HHHHhC----CceEEEecCC---CCCC-------HHHHHHHHHHHHc
Q 028239 146 LRKQIG----AAAYIECSSK---TQQN-------VKAVFDTAIKVVL 178 (211)
Q Consensus 146 ~~~~~~----~~~~~~~sa~---~~~~-------v~~lf~~l~~~~~ 178 (211)
+...++ ..+++.+||. +|.| +.++++.+...+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 444332 2488888876 4554 6778888777654
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.66 E-value=1.6e-15 Score=124.89 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=98.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------CCCceeeeee-------EEEEECCe
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD---------------------YIPTVFDNFS-------ANVAVDGS 52 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~---------------------~~~t~~~~~~-------~~~~~~~~ 52 (211)
+..+++|+++|+.++|||||+.+|+... .... ......++.. ........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3467899999999999999999887421 1100 0000011111 11112233
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhhCCCC-cEEEEeeCCCccc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNV-PIVLVGTKLDLRE 124 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~ 124 (211)
.+.+.++|+||+++|.......+..+|++|+|+|+++.. | ....+.| ...... ++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~-~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHA-LLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHH-HHHHHc--CCCcEEEEEEcccCCc
Confidence 467789999999999988888899999999999998731 2 1221222 222222 56 4788999999762
Q ss_pred CccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHH
Q 028239 125 DRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 168 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~ 168 (211)
... .... ..-..+++..++++.+. .+|+++||.+|+|+.+
T Consensus 160 ~~~---~~~~-~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKY---SKAR-YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhh---hHHH-HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 110 0000 00123556677777662 4899999999999853
No 242
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=5.8e-15 Score=114.63 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=90.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCcc-----
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYS----- 68 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~----- 68 (211)
..++|+++|.+|+|||||+|+|++..+... ..+|.. ......+..++..+.+.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999875443 233332 3334455667888999999999943221
Q ss_pred ---------------------cccccccc--CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 69 ---------------------RLRPLSYR--GADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 69 ---------------------~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..+...+. .+|+++++++.+.. ..-.+ ..++..+.. .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l~~---~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRLSK---RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHHhc---cCCEEEEEECCCcCC
Confidence 11112333 46677777776542 11222 233344432 689999999999855
Q ss_pred CccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
..+ .......+.+.++.++. ++|.....
T Consensus 158 ~~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~ 185 (276)
T cd01850 158 PEE--------LKEFKQRIMEDIEEHNI-KIYKFPED 185 (276)
T ss_pred HHH--------HHHHHHHHHHHHHHcCC-ceECCCCC
Confidence 321 01334556677777776 67766553
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.66 E-value=2.1e-15 Score=124.88 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=95.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC------CCCCC-----------CCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK------FPTDY-----------IPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~------~~~~~-----------~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
..+++|+++|++++|||||+++|+... ....+ .+...+.....+..++ ..+.++|+||++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 457899999999999999999998521 11111 0111111111222334 4667999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
|.......+..+|++++|+|+.+...-+.. .++..+... ++| +|+++||+|+.+... ......++...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~ 225 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVRE 225 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHHH
Confidence 877666677899999999999877554443 333344443 677 778999999865321 00112234455
Q ss_pred HHHHhC----CceEEEecCCCCCC
Q 028239 146 LRKQIG----AAAYIECSSKTQQN 165 (211)
Q Consensus 146 ~~~~~~----~~~~~~~sa~~~~~ 165 (211)
+....+ ..+++.+||.++.+
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHhcCCCcCcceEEEEEcccccc
Confidence 555542 24899999998853
No 244
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=111.07 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=113.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-------ccccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-------RLRPLSY 75 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~ 75 (211)
+.-.+|+++|.|++|||||++.|.+.. -...|..|+.+.....+.+++ ..+|+.|+||--.-. ...-...
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 445789999999999999999999977 567888899999999999999 556799999842211 2334468
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------C---------------------------------------
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFA-------P--------------------------------------- 109 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------~--------------------------------------- 109 (211)
++||++++|+|+....+..+ .+..++.... |
T Consensus 139 R~ADlIiiVld~~~~~~~~~---~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRD---IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred ccCCEEEEEEecCCChhHHH---HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 99999999999986554221 1222222111 1
Q ss_pred -----------------------CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 110 -----------------------NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 110 -----------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
-+|.++|.||.|+.. .++...+.+.. .++.+||..+.|+
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nl 277 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINL 277 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCH
Confidence 168899999999854 34444455554 6789999999999
Q ss_pred HHHHHHHHHHHcC
Q 028239 167 KAVFDTAIKVVLQ 179 (211)
Q Consensus 167 ~~lf~~l~~~~~~ 179 (211)
+++.+.|.+.+--
T Consensus 278 d~L~e~i~~~L~l 290 (365)
T COG1163 278 DELKERIWDVLGL 290 (365)
T ss_pred HHHHHHHHHhhCe
Confidence 9999999998743
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=9.1e-15 Score=115.22 Aligned_cols=80 Identities=24% Similarity=0.210 Sum_probs=54.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEE---------------------ECC-eEEEEEEEeCCCC-
Q 028239 9 CVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVA---------------------VDG-SIVNLGLWDTAGQ- 64 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~l~D~~G~- 64 (211)
|+++|.|++|||||+++|.+... ...++.++.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998763 23344433222211111 222 3467999999997
Q ss_pred ---cCcccccccc---ccCCcEEEEEEECC
Q 028239 65 ---EDYSRLRPLS---YRGADIFVLAFSLI 88 (211)
Q Consensus 65 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 88 (211)
+.+..+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444443443 89999999999996
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=2e-15 Score=125.35 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCce----------------------eeeeeEEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY----------IPTV----------------------FDNFSANVA 48 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~----------~~t~----------------------~~~~~~~~~ 48 (211)
....++|+++|++++|||||+++|+... +.... .++. .+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3567899999999999999999998542 21100 1110 011111122
Q ss_pred ECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239 49 VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY 128 (211)
Q Consensus 49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 128 (211)
.++ ..+.||||||++.|.......+..+|++++|+|+.....-+.. ..+ ..+... ...|+|+++||+|+......
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccccchhH
Confidence 233 5677999999988866555557899999999999875432222 121 122222 13578999999998743210
Q ss_pred cccccCCccccHHHHHHHHHHhC---CceEEEecCCCCCCHHHH
Q 028239 129 LADHVGSNVITTAQGEELRKQIG---AAAYIECSSKTQQNVKAV 169 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sa~~~~~v~~l 169 (211)
.......+...+.+..+ ..+++.+||++|.|+.++
T Consensus 179 ------~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 ------VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ------HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 00001112223333333 248999999999999865
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.64 E-value=1.6e-15 Score=123.99 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=92.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCc-------------e---------eeeeeEEEEECCe
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDY----------IPT-------------V---------FDNFSANVAVDGS 52 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~----------~~t-------------~---------~~~~~~~~~~~~~ 52 (211)
++|+++|++++|||||+.+|+... ..... .++ . .+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 589999999999999999997432 11100 000 0 111111222233
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH 132 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 132 (211)
..+.|+||||+++|.......+..+|++++|+|+.....-+.. +.+ ..+... ...++++++||+|+......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~~---- 151 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDEE---- 151 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchHH----
Confidence 5677999999998876555678899999999999876443332 222 222222 23468999999998643210
Q ss_pred cCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHH
Q 028239 133 VGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKA 168 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~ 168 (211)
......++...+.+..+. .+++++||.+|+|+++
T Consensus 152 --~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 --VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred --HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 000011223334444443 3799999999999885
No 248
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=5.6e-15 Score=100.33 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---------ccccccc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---------LRPLSYR 76 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---------~~~~~~~ 76 (211)
+|+|+|.+|+|||||+|+|++... .....+++.......+.+++..+ .++||||-..-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998642 33344444444445566777665 4999999643211 1222348
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK 119 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 119 (211)
.+|++++|+|.+++.. +.. ..++..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999887433 222 34445553 48999999998
No 249
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=113.58 Aligned_cols=174 Identities=15% Similarity=0.120 Sum_probs=113.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCce-eeeeeEEEEECCeEEEEEEEeCCCCcC-------ccccccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTV-FDNFSANVAVDGSIVNLGLWDTAGQED-------YSRLRPL 73 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~ 73 (211)
+..+++|+++|..|+|||||||+|+.+...+.. .+.. .....-...++++ .+.+||+||-++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence 456899999999999999999999975532221 1211 1122222234443 366999999654 4445566
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc-----cccccccCCccccHHHHHHHHH
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR-----GYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
++...|.++++.++.|+.---+. ..|.+.+... -+.++++++|.+|..... ....++...++...+.+....+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 78899999999999988644443 5555554433 358999999999976542 1122222233333333333322
Q ss_pred HhC-CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 149 QIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 149 ~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
... ..|++..+...+.|++.+...++..+-..
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 222 24788888999999999999999988643
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=4.4e-15 Score=122.41 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=96.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------------------CCCCce---eeee-eEEEEECCe
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPT------------------------DYIPTV---FDNF-SANVAVDGS 52 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~------------------------~~~~t~---~~~~-~~~~~~~~~ 52 (211)
+..+++|+++|+.++|||||+.+|+... ... +..+.. +... .........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4567999999999999999999997521 110 000000 0111 011112333
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS-------YENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE 124 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 124 (211)
...+.|+|+||+.+|.......+..+|++++|+|++.... -+.. +.| ..+... ++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~-eh~-~~~~~~--gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR-EHA-LLAFTL--GVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH-HHH-HHHHHc--CCCeEEEEEEcccccc
Confidence 4677799999999988777777899999999999987531 1221 333 233333 666 679999999432
Q ss_pred --CccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHH
Q 028239 125 --DRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 168 (211)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~ 168 (211)
... .. .....++...+....+. .+++.+||.+|+|+.+
T Consensus 160 ~~~~~-----~~-~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQ-----ER-YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhH-----HH-HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 110 00 00122334444444443 5899999999999864
No 251
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=105.06 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=104.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCC----------cCcccc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQ----------EDYSRL 70 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~ 70 (211)
.++...-|+++|-+++|||||+|+|++++--.....|.+ +....-+.+++. +.+.|.||- +.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 345667899999999999999999999762222222222 222223344543 569999992 223333
Q ss_pred cccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239 71 RPLSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR 147 (211)
Q Consensus 71 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
...|++ +-.++++++|+..+..-.+ ...++.+... ++|++||+||+|.....+ . .......+
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~-~k~l~~v~ 161 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLEL--GIPVIVVLTKADKLKKSE----------R-NKQLNKVA 161 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEccccCChhH----------H-HHHHHHHH
Confidence 344443 3568888999877766555 3556666666 899999999999876432 1 11122233
Q ss_pred HHhCC---ce--EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 148 KQIGA---AA--YIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 148 ~~~~~---~~--~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+.... .. ++..|+..+.|++++...|.+.+..
T Consensus 162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22221 12 7889999999999999999887644
No 252
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.62 E-value=9.3e-15 Score=113.44 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=77.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCce-----------e---eeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPTV-----------F---DNFSANVAVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~-----~~t~-----------~---~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 68 (211)
+|+++|++|+|||||+++++...-.... .++. + ......+..++ +.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999753311000 0010 0 00111233344 667899999998877
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
..+...++.+|++++|+|+++....... ..| ..+... ++|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCCC
Confidence 7777789999999999999887665543 333 334433 7899999999998754
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=6.5e-15 Score=121.19 Aligned_cols=167 Identities=13% Similarity=0.060 Sum_probs=103.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC---CCC-CCCce---eeeeeE-----------EE-EEC------------
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKF---PTD-YIPTV---FDNFSA-----------NV-AVD------------ 50 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~---~~~-~~~t~---~~~~~~-----------~~-~~~------------ 50 (211)
+++..++|.++|+...|||||+.+|.+... ..+ ..+.+ +-.... .+ ..+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 456789999999999999999999986321 110 00000 000000 00 000
Q ss_pred ----CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 51 ----GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 51 ----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.....+.|+|+||++.|-......+..+|++++|+|++++ ..-+.. +.+ ..+... .-.++|+|+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCH
Confidence 0023577999999998877666667899999999999874 233332 233 222222 23468999999998753
Q ss_pred ccccccccCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 126 RGYLADHVGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
... ....++..++.... ...+++.+||++|.|+++|++.|...+..
T Consensus 187 ~~~--------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 187 AQA--------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHH--------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 210 01112333333221 23489999999999999999999976644
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=128.02 Aligned_cols=154 Identities=18% Similarity=0.120 Sum_probs=93.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CCCceee----------------------eeeEEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTVFD----------------------NFSANVAV 49 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~----------~~~t~~~----------------------~~~~~~~~ 49 (211)
...++|+++|++++|||||+++|+... +... ..+++.+ .....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 457899999999999999999998643 2210 1111000 01112222
Q ss_pred CCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239 50 DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL 129 (211)
Q Consensus 50 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 129 (211)
++ ..+.|+||||++.|.......+..+|++++|+|++....-+.. ..+ ..+... ...+++|++||+|+......
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~-~~~~~~-~~~~iivvvNK~D~~~~~~~- 175 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHS-FIASLL-GIRHVVLAVNKMDLVDYDQE- 175 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHH-HHHHHh-CCCeEEEEEEecccccchhH-
Confidence 33 4566999999988765555567899999999999775433222 111 222222 23578899999998642110
Q ss_pred ccccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHH
Q 028239 130 ADHVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKA 168 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~ 168 (211)
.......+..++...++. .+++.+||++|.|+.+
T Consensus 176 -----~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 -----VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 000011223334445443 3699999999999874
No 255
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.5e-15 Score=104.24 Aligned_cols=154 Identities=17% Similarity=0.232 Sum_probs=113.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
+.=|++++|-.|+|||||++-|.+... .+...||. ..+.+.+ ++++.+|.+|+..-+..|..++..+|++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHheecC--ceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 456999999999999999999988774 22323332 2334566 6788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH---HHhC------
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR---KQIG------ 151 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------ 151 (211)
++.+|+-|.+.|.+....+-..+.... .+.|+++.+||+|.+..- ++++.+... +..+
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~ 159 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVN 159 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhccccccc
Confidence 999999999999998566555554443 699999999999987752 222221111 1111
Q ss_pred -------CceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 152 -------AAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 152 -------~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
....+.||...+.+-.+.|.|+.+.+
T Consensus 160 ~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 160 LTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 13457788888888888888876654
No 256
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=4.1e-14 Score=109.31 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=112.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----ccc---ccccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----LRP---LSYRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~~~---~~~~~~d 79 (211)
.|.++|-|++|||||++++...+ -...|+.|+....-..+.+. ..-.|.+-|+||--.-.+ +=. ..+..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 57899999999999999999865 45678888866665566652 223466999999533221 111 1345688
Q ss_pred EEEEEEECCChhh---HHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 80 IFVLAFSLISRAS---YENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
.++.|+|++..+- .++. ..+..++..+. .+.|.+||+||+|+....+ ........+.+..+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence 9999999975543 4444 55666666654 5899999999999765432 3333344455444442
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.++.+||.++.|++++...+.+.+....
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 3333999999999999999999887764
No 257
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.58 E-value=8.6e-14 Score=103.18 Aligned_cols=163 Identities=18% Similarity=0.164 Sum_probs=99.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-----------ccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-----------LRP 72 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~~~ 72 (211)
++|+++|.+|+|||||+|++++....... .+.+.........+++. .+.++||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999987632221 12222222333445664 566999999654321 011
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
....++|++++|+++.. .+-.+ ...++.+.+.. .-.+++++.|+.|...... ..+... -.....+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~--~~~~~~--~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT--LEDYLE--NSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCc--HHHHHH--hccHHHHHHHHH
Confidence 23467899999999877 33232 33444444433 1357899999999654321 000000 011344556666
Q ss_pred hCCceEEEec-----CCCCCCHHHHHHHHHHHHcC
Q 028239 150 IGAAAYIECS-----SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 150 ~~~~~~~~~s-----a~~~~~v~~lf~~l~~~~~~ 179 (211)
.+. .|+..+ +..+.++.+|++.+.+.+.+
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 665 454444 45677899999988887765
No 258
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.58 E-value=3.2e-15 Score=98.99 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=99.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----cccccCCcEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----PLSYRGADIFVL 83 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----~~~~~~~d~~i~ 83 (211)
|++++|..|+|||||.+.+.+...-.. -|. -+.++++ . .+||||.-.-...| .....++|.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQ------Ave~~d~-~---~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQ------AVEFNDK-G---DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccc------eeeccCc-c---ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999988753211 111 1222221 1 58999943322222 334678999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|-+++++++--. ..+.+.. ..|+|-|++|.|+.++ -+.+..++|...-|..++|++|+.++
T Consensus 71 v~~and~~s~f~--p~f~~~~-----~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFP--PGFLDIG-----VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCC--ccccccc-----ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence 999999876333 2222222 4569999999999964 35677888999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 028239 164 QNVKAVFDTAIK 175 (211)
Q Consensus 164 ~~v~~lf~~l~~ 175 (211)
.|++++++.|..
T Consensus 132 ~gv~~l~~~L~~ 143 (148)
T COG4917 132 QGVEELVDYLAS 143 (148)
T ss_pred ccHHHHHHHHHh
Confidence 999999988764
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=3.4e-14 Score=123.31 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=80.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--C---CCC--------------CCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK--F---PTD--------------YIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~--~---~~~--------------~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
.-+|+|+|++++|||||+++|+... . ... ..+++.......+..++ +.+.+|||||+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence 4499999999999999999997421 1 000 01111122223344455 6677999999998
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+...+...++.+|++++|+|+.+....+.. .++..+... +.|+++++||+|+...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 887778889999999999999887666553 333344433 7899999999998753
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.8e-14 Score=113.77 Aligned_cols=157 Identities=19% Similarity=0.250 Sum_probs=111.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+++.=|-|+|+..-|||||+..|..........+-. ..-|...+. +|+. +.|.|||||..|..|+.....-.|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccE
Confidence 356678999999999999999998877554433322 122333333 5544 5599999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH------HHHhCC-
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL------RKQIGA- 152 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~- 152 (211)
+++|+.++|.---+.+ +.+.... .+.|+||++||+|.+.... ..-.+++ .+.+|.
T Consensus 228 vVLVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~p------------ekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGANP------------EKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred EEEEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCCH------------HHHHHHHHHcCccHHHcCCc
Confidence 9999999986433332 2333332 5999999999999876431 2222222 233333
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++.+++||++|+|++.|-+.+.-.+.-.
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLLAEVM 318 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHHHHHh
Confidence 6889999999999999998887766443
No 261
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2e-14 Score=103.90 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=109.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc---CCcE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR---GADI 80 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---~~d~ 80 (211)
+..-.|+++|+.++|||+|.-.|..+.+.+..++. +.....+.+++.. +.++|.|||++.+.....++. .+-+
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHcccccccee
Confidence 34457999999999999999999888654443332 2223344455544 569999999998875555554 7999
Q ss_pred EEEEEECC-ChhhHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccCccc--cccc----------------------
Q 028239 81 FVLAFSLI-SRASYENVLKKWMPELRRF---APNVPIVLVGTKLDLREDRGY--LADH---------------------- 132 (211)
Q Consensus 81 ~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~--~~~~---------------------- 132 (211)
++||+|.. ......++-+.+++.+... ...+|++++.||.|+.-.+.. +...
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 99999974 3455666657778877766 268999999999998543211 1000
Q ss_pred cCCccccHHHHHH--HHHHh-CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 133 VGSNVITTAQGEE--LRKQI-GAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~-~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
...+...-.++.. |.+-. .-+.|.+.|++++ +++++-+|+.++
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0011111111111 11111 1246888999988 899999998765
No 262
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1e-13 Score=111.09 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=116.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCC-----C---------CCCce--eeeeeEEEEE-CCeEEEEEEEeCCCCcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK--FPT-----D---------YIPTV--FDNFSANVAV-DGSIVNLGLWDTAGQED 66 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~---------~~~t~--~~~~~~~~~~-~~~~~~l~l~D~~G~~~ 66 (211)
.-+..++-+-.-|||||..|++... +.. . ..+.+ .......+.. ++..|.++++|||||-+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3467889999999999999998532 111 1 11111 1111222332 46889999999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
|.-.....+..|-+.++|+|++..-..+.+ ...+..+.+ +.-+|-|+||+||+.... +.-.+++
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adp------------ervk~eI 152 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADP------------ERVKQEI 152 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCH------------HHHHHHH
Confidence 998888889999999999999998777777 455555544 688899999999998642 2223344
Q ss_pred HHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 147 RKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 147 ~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.+-.+. ...+.+||++|.||+++++.+++.+-.+.
T Consensus 153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 444444 35789999999999999999999987654
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=9.3e-14 Score=120.60 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=80.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-----C---CC-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-----F---PT-----------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-----~---~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
.+..+|+|+|++++|||||+++|+... . .+ ...+++.......+..++ ..+.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 345689999999999999999997521 1 10 011111111223344455 56779999999
Q ss_pred cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..|...+...++.+|++++|+|+.+....++. ..+..+... +.|+|+++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 88777777789999999999999887655543 333344443 789999999999874
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.9e-14 Score=114.65 Aligned_cols=163 Identities=20% Similarity=0.160 Sum_probs=109.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-ccccc--------cc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLR--------PL 73 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~--------~~ 73 (211)
..++|+++|.||+|||||+|.|.+.. ++....+|+.+.....+.++|.. +.+.||+|... -.... ..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence 45899999999999999999999876 77888899999999999999954 55999999755 22111 12
Q ss_pred cccCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhC-------CCCcEEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239 74 SYRGADIFVLAFSLI--SRASYENVLKKWMPELRRFA-------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE 144 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
.+..+|.+++|+|+. +-++-..+ ...+....... ...|++++.||.|+...-.. ... ...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~---------~~~-~~~ 413 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE---------MTK-IPV 413 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCcccc---------ccC-Cce
Confidence 467899999999993 33332232 22222222211 24789999999998765210 000 000
Q ss_pred HHHHH--h-CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 145 ELRKQ--I-GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 145 ~~~~~--~-~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.+... . ......++|+++++|++.|.+.+.......
T Consensus 414 ~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 414 VYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred eccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 11111 1 111355699999999999998888776543
No 265
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.56 E-value=8e-14 Score=110.39 Aligned_cols=128 Identities=14% Similarity=0.145 Sum_probs=88.5
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCC
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----------ASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 121 (211)
.+.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+...+.... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 47788999999999999999999999999999999874 345555445554444433 6899999999999
Q ss_pred cccCcccc------ccccCCccccHHHHHHHHHH-----h----CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 122 LREDRGYL------ADHVGSNVITTAQGEELRKQ-----I----GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 122 l~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
+..+.-.. .++..-...+.+.+..+... . ..+..+.++|.+..++..+|+.+.+.++..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 75543221 11111102234444443322 1 123456799999999999999988887654
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.5e-14 Score=111.63 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=98.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------------------CCCCce---eeee-eEEEEECC
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNK--FPT------------------------DYIPTV---FDNF-SANVAVDG 51 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~------------------------~~~~t~---~~~~-~~~~~~~~ 51 (211)
+...+++++++|++++|||||+-+|+-.. ++. +...+. +.++ .......-
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 55678999999999999999999887321 111 000000 0011 01111222
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-------SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..+.+.|.|+||+..|-...-....+||+.|+|+|+.+.+ ..+.- ++ ..+.....-..+||++||+|+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtr-EH--~~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTR-EH--AFLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchh-HH--HHHHHhcCCceEEEEEEcccccc
Confidence 3367889999999998887777889999999999998763 11111 11 11222223456789999999987
Q ss_pred CccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239 125 DRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l 169 (211)
-+.. ....+ ..+...+.+..+. .+|+.+|+..|+|+.+-
T Consensus 160 wde~-----rf~ei-~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEE-----RFEEI-VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cCHH-----HHHHH-HHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 4321 11111 1222335555554 46999999999987643
No 267
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.54 E-value=7.7e-14 Score=117.00 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=78.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc--CCCCC------C---------CCCce---eeee-eEEEEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS--NKFPT------D---------YIPTV---FDNF-SANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~--~~~~~------~---------~~~t~---~~~~-~~~~~~~~~~~~l~l~D~~G 63 (211)
+..+|+|+|++++|||||+++|+. +.... . +.+.. +..+ .....++...+.+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 456999999999999999999863 21110 0 00000 1111 12233344457788999999
Q ss_pred CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
+..|.......++.+|++++|+|+++...-.. ..+...... .++|+++++||+|+..
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECccccC
Confidence 98888766667899999999999987532222 344444443 3799999999999864
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.52 E-value=3.8e-13 Score=109.13 Aligned_cols=82 Identities=23% Similarity=0.219 Sum_probs=56.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEE---------------------EC-CeEEEEEEEeCCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVA---------------------VD-GSIVNLGLWDTAG 63 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~l~l~D~~G 63 (211)
++|+++|.|++|||||+++|.+.... ..+++++.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987643 3454444322222211 11 1336788999999
Q ss_pred Cc----Ccccccccc---ccCCcEEEEEEECC
Q 028239 64 QE----DYSRLRPLS---YRGADIFVLAFSLI 88 (211)
Q Consensus 64 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 88 (211)
.. ....+-..+ ++.+|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 233333344 78999999999996
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=5.9e-13 Score=111.31 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=75.1
Q ss_pred EEEEEEeCCCCcCc-----cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239 54 VNLGLWDTAGQEDY-----SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY 128 (211)
Q Consensus 54 ~~l~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 128 (211)
..+.|.||||-... .......+..+|++++|+|.+...+..+ ..+.+.+.....+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence 34668999996442 1122336899999999999987655554 344555555422369999999999864321
Q ss_pred cccccCCccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 129 LADHVGSNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
-..+....+.... ....+|++||+.|.|++.+++.+.+.=
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 1233344433211 234689999999999999999988743
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=3.2e-13 Score=117.23 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=73.4
Q ss_pred ECCCCCCHHHHHHHHhcCC--CCC--CCC-C-ce----------e---eeeeEEEEECCeEEEEEEEeCCCCcCcccccc
Q 028239 12 VGDGAVGKTCMLICYTSNK--FPT--DYI-P-TV----------F---DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP 72 (211)
Q Consensus 12 iG~~~~GKSsli~~l~~~~--~~~--~~~-~-t~----------~---~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 72 (211)
+|++++|||||+++|+... ... ... + +. + ......+..++ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 6999999999999996432 100 000 0 00 0 11112333444 6778999999988877777
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..++.+|++++|+|++........ ..| ..+... +.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 788999999999999887766654 333 333333 789999999999764
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=7.4e-13 Score=115.00 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=79.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC--CC------CC-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN--KF------PT-----------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~--~~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
+..+|+|+|.+++|||||+++|+.. .. .. ...+++.+.....+...+ ..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence 3459999999999999999999741 11 10 011122222223344455 567799999998
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.|.......++.+|++++|+|+......++. . .+..+... +.|.|+++||+|+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~-~~~~~~~~--~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-T-VWRQADKY--KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhH-H-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 7766666678899999999999877666653 3 33344444 7899999999998753
No 272
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=1.6e-12 Score=99.40 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=78.1
Q ss_pred cCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH
Q 028239 65 EDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG 143 (211)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (211)
+++..+.+.+++++|++++|||++++. ++..+ ..|+..+.. .++|+++|+||+||.+.+. +..++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence 778888888999999999999999887 88888 888877654 4899999999999975432 444444
Q ss_pred HHHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 144 EELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
..+. ..+. +++++||++|.|++++|+.+..
T Consensus 91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 4443 4665 8999999999999999988764
No 273
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.46 E-value=5.5e-13 Score=106.47 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=86.6
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----------ASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl 122 (211)
+.+.+||.+|+...+..|..++.++++++||+|+++. ..+.+....|...+.... .+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 6678999999999999999999999999999999874 345555444444444332 68999999999997
Q ss_pred ccCcccc------ccccCCccccHHHHHHHHHH-----hC-----CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 123 REDRGYL------ADHVGSNVITTAQGEELRKQ-----IG-----AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 123 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
....-.. .+.. ....+.+.+.++... .. .+..+.++|.+-.++..+|+.+...+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y-~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDY-KGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCC-CCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 6532211 1111 111233444333222 11 234577889999999999999888776543
No 274
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.46 E-value=9.2e-13 Score=116.90 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=92.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECC------e----------EEEEEEEeCCCCcCccccccccccCCc
Q 028239 17 VGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDG------S----------IVNLGLWDTAGQEDYSRLRPLSYRGAD 79 (211)
Q Consensus 17 ~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~------~----------~~~l~l~D~~G~~~~~~~~~~~~~~~d 79 (211)
++||||+.++.+...+....+-..... ...+..+. . .-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 359999999998876554333321111 11222221 0 012679999999999888777888999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc-----cccccCC-ccccHHHH-------
Q 028239 80 IFVLAFSLISR---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY-----LADHVGS-NVITTAQG------- 143 (211)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~~~-~~~~~~~~------- 143 (211)
++++|+|+++. .+++.+ ..+... ++|+++|+||+|+...... ....... ..-...+.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999873 444433 233333 7899999999998642110 0000000 00000000
Q ss_pred -HHHH------------HH-hCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 144 -EELR------------KQ-IGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 144 -~~~~------------~~-~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.++. +. .+..+++++||++|+|+++|+..|...
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0011 11 133589999999999999999877654
No 275
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=5e-13 Score=91.48 Aligned_cols=113 Identities=27% Similarity=0.349 Sum_probs=80.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
+||+++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777754433 3322 2223344577889999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ 164 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (211)
+.++.++++.+ |...+.... .+.|.++++||.|+.+... +..++.. .|+++|++++.
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~ 112 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE 112 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence 99999998764 555554433 4788999999999854322 3333332 45678888998
Q ss_pred CHH
Q 028239 165 NVK 167 (211)
Q Consensus 165 ~v~ 167 (211)
|+.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 874
No 276
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.44 E-value=2.3e-12 Score=99.01 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=114.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccC----CcEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRG----ADIFV 82 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~----~d~~i 82 (211)
-+|+|+|+.++|||||+.+|.+..-...-.+.........-...+....+.+|=..|+--...+....+.. -..+|
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi 132 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI 132 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence 37999999999999999999876633322211111111111112233556689888865444443333322 24778
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCC----------------------------------------------------
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPN---------------------------------------------------- 110 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---------------------------------------------------- 110 (211)
++.|++++...-+.+++|...+.+...+
T Consensus 133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL 212 (473)
T KOG3905|consen 133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL 212 (473)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence 9999999966555558888777644210
Q ss_pred ----------CcEEEEeeCCCcccCcccc-ccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 111 ----------VPIVLVGTKLDLREDRGYL-ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 111 ----------~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+|++||++|||...--+.. .-..++-.......+.|+-+++. ..+.+|+++..|++-+..+|++.++-
T Consensus 213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 7999999999974321100 00111122344567889999998 88999999999999999999999876
Q ss_pred Cchhh
Q 028239 180 PPRRK 184 (211)
Q Consensus 180 ~~~~~ 184 (211)
-.-+.
T Consensus 292 ~~ftt 296 (473)
T KOG3905|consen 292 FPFTT 296 (473)
T ss_pred cccCC
Confidence 54433
No 277
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.44 E-value=2.3e-13 Score=109.69 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=117.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---c-cccc-----cc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---S-RLRP-----LS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---~-~~~~-----~~ 74 (211)
..-+++++|.|++|||||++.+.... -...|..|+...+...+.+.. ..++++||||--+- + ...+ ..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 34589999999999999998887655 445666666555544444444 56779999994211 1 1111 11
Q ss_pred ccCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH--HHHHHHh
Q 028239 75 YRGADIFVLAFSLI--SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG--EELRKQI 150 (211)
Q Consensus 75 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 150 (211)
.+--.+++|+.|++ .+-|..+. -.++..+.....|.|+|+|+||+|+..... ++++.. .+.....
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD 313 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence 22345778888886 45677766 677788888888999999999999877654 444332 2223333
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHcCCchhhHHH
Q 028239 151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMM 187 (211)
Q Consensus 151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~~ 187 (211)
+.++++++|+.+.+||-++.......++..+-.....
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klk 350 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLK 350 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence 4458999999999999999999888888766555543
No 278
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.43 E-value=3.8e-12 Score=102.01 Aligned_cols=162 Identities=16% Similarity=0.134 Sum_probs=112.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCC------Cce------e-eeeeEEEEECCeEEEEEEEeCCCCcCccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYI------PTV------F-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLR 71 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~------~t~------~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 71 (211)
-+|+|+-+..-|||||+..|+... |..... .+. + +...+...+....+.++|.|||||.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 479999999999999999998643 322100 000 1 1223333333344778899999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
+..+.-+|++++++|+.+..-=+.- -.+.+.+. .+.+-|||+||+|.+..+. ..-.+++..+.-.++
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARP---------DEVVDEVFDLFVELG 152 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 9999999999999999887533321 11222222 2677799999999987654 123344455554444
Q ss_pred C------ceEEEecCCCC----------CCHHHHHHHHHHHHcCCc
Q 028239 152 A------AAYIECSSKTQ----------QNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 152 ~------~~~~~~sa~~~----------~~v~~lf~~l~~~~~~~~ 181 (211)
+ .|++..|+.+| .++..||+.|++++..+.
T Consensus 153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 3 48899999887 479999999999987755
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.42 E-value=6.8e-13 Score=115.61 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=78.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CC---------CCCCC-------ceeee-eeEEEEECCeEEEEEEEeCCCCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FP---------TDYIP-------TVFDN-FSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~---------~~~~~-------t~~~~-~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
+..+|+++|+.++|||||+++|+... .. .++.+ |.... .......++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34599999999999999999997531 00 01111 11111 11122345566889999999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
+|.......++.+|++++|+|+.+....+.. ..|.. ... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-ALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-HHH--cCCCEEEEEEChhccc
Confidence 9887777889999999999999876444432 23322 222 2678899999999853
No 280
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=1.5e-12 Score=100.03 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=71.5
Q ss_pred EEEEEeCCCCcCcc---cccccccc---C--CcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 55 NLGLWDTAGQEDYS---RLRPLSYR---G--ADIFVLAFSLISRASYENVL-KKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 55 ~l~l~D~~G~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.+.+||+||+..+. ..+..+++ . ++++++|+|+.......+.. ..|.........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 46699999986543 23322222 2 89999999996544333321 2222222222248999999999998764
Q ss_pred ccccc--cccCC---------------ccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 126 RGYLA--DHVGS---------------NVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 126 ~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
..... ..... ....... .+..++.+. .+++++||+++.|++++.++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLEL-LRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHH-HHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 32100 00000 0000001 112223342 37899999999999999999988764
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.1e-12 Score=99.33 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=99.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC---CCC---------CCCCceeee---------------------eeEE-E
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNK---FPT---------DYIPTVFDN---------------------FSAN-V 47 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~---------~~~~t~~~~---------------------~~~~-~ 47 (211)
.....+|.+.+|+..-||||||-||+... +.+ ....+.++. +.+. +
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 45667999999999999999999998643 100 000111111 1111 1
Q ss_pred EECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239 48 AVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127 (211)
Q Consensus 48 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 127 (211)
..+. .+|.+-|||||+.|.........-||+.|+++|+...---+.-...++ .....-..++|+.||+||.+..+
T Consensus 82 sT~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I---~sLLGIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 82 STEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI---ASLLGIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred cccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHH---HHHhCCcEEEEEEeeecccccCH
Confidence 1122 456699999999999888888889999999999865433332222222 22222456789999999988643
Q ss_pred ccccccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHH
Q 028239 128 YLADHVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVK 167 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~ 167 (211)
.. ......+-..|+.+++. ..++++||..|+||-
T Consensus 157 ~~------F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EV------FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HH------HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 10 00112334557777765 478999999999875
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.40 E-value=7.1e-12 Score=97.44 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=71.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc-------c
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL-------S 74 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------~ 74 (211)
...++|+++|.+|+||||++|++++... .....++...........++ ..+.||||||.......... +
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 3568999999999999999999998763 22222222222222233455 56789999997654221111 1
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccC
Q 028239 75 Y--RGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRED 125 (211)
Q Consensus 75 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~ 125 (211)
+ ...|++++|..++... +......+++.+.... .-.++||+.|+.|....
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 1 2689999996654321 1111123333343332 13578999999997643
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.40 E-value=8.3e-12 Score=92.51 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE--EEEeeCCCcccCcccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI--VLVGTKLDLREDRGYLAD 131 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~~~~~~~ 131 (211)
....++++.|........+ .-+|.++.|+|+.+.++... .+.. ++.+ ++++||+|+.+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~~---- 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMVG---- 154 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhcccccc----
Confidence 3445778877422222221 12688999999988776432 1111 3334 89999999975311
Q ss_pred ccCCccccHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 132 HVGSNVITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
...+...+..+.+ ...+++++||++|.|++++|+++.+++.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 2233334444442 2358999999999999999999997764
No 284
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.7e-13 Score=110.91 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=108.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----eeeeeE-----------------EEEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----FDNFSA-----------------NVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~-----------------~~~~~~~~~~l~l~D~~G 63 (211)
+..=+||+|+..+|||-|+..+.+........+.. +.+|.. .+.+.+ +.++||||
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg----~lvIdtpg 549 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG----LLVIDTPG 549 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe----eEEecCCC
Confidence 34568999999999999999999876544333322 111111 122222 56999999
Q ss_pred CcCccccccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC-----ccccccc--c
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISR---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-----RGYLADH--V 133 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~--~ 133 (211)
++.|..++......||.+|+|+|+... ++.+.+ ++++.. ++||||++||+|.... +.++... -
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 999999999999999999999998654 444433 444444 8999999999995321 1111000 0
Q ss_pred CCccccH-------HHHHHHHH-HhC------------CceEEEecCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239 134 GSNVITT-------AQGEELRK-QIG------------AAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 134 ~~~~~~~-------~~~~~~~~-~~~------------~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
+...+.. ..+.+|++ .++ .+.++++||..|+||-+|+.+|++........+..
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~ 695 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA 695 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 01111211 111 13567899999999999999999988665555443
No 285
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.3e-12 Score=96.51 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=111.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---cccccccCCcEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---LRPLSYRGADIFVL 83 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~~i~ 83 (211)
.+|+++|...+||||+.+..+++..+.+......+.....-.+.+..+.+++||+|||-.+-. -.+..++.+.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 579999999999999999988887655533322222222223345668899999999865432 23456899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCcccc-ccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYL-ADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
|+|+.+. +.+....+...+.... |++.+-|.+.|.|...+.-.. ..+........+.+..-...... .|+.+|
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~v-sf~LTS 184 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQV-SFYLTS 184 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceE-EEEEee
Confidence 9997653 3333366666665544 789999999999975443211 00000111112222222222232 566666
Q ss_pred CCCCCCHHHHHHHHHHHHcCCchhhH
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPRRKE 185 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~~~~ 185 (211)
.. ..++-++|..++++++.+-..-+
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhchhHH
Confidence 65 67899999999999987644433
No 286
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.38 E-value=5.5e-12 Score=96.41 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=73.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---c-------c
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---L-------R 71 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~-------~ 71 (211)
...++|+|+|.+|+|||||+|++++..... ...+++..........++ ..+.+|||||-..... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 356899999999999999999999976422 222333222223334455 4567999999654421 0 1
Q ss_pred cccc--cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCC---CCcEEEEeeCCCcccCc
Q 028239 72 PLSY--RGADIFVLAFSLISR-ASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLREDR 126 (211)
Q Consensus 72 ~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 126 (211)
..++ ...|++++|..++.. .+..+ ..+++.+..... -.++++|.||+|...+.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 1122 257888888766543 22332 244444444321 25799999999986544
No 287
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.37 E-value=4e-12 Score=95.65 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=74.8
Q ss_pred EEEEEEeCCCCcC-cc-----ccccccc--cCCcEEEEEEEC---CChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 54 VNLGLWDTAGQED-YS-----RLRPLSY--RGADIFVLAFSL---ISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 54 ~~l~l~D~~G~~~-~~-----~~~~~~~--~~~d~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
....++|||||-. |. ++....+ ....++++|+|. +++.+|-.-.-.--..+.+ ...|+|++.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccc
Confidence 5566999999732 21 2222222 234566777775 4455554431222223333 38999999999998
Q ss_pred ccCccc---------cc------cccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239 123 REDRGY---------LA------DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 123 ~~~~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
.+..=- ++ .......+......-+-+-++.+..+-+||.+|.|++++|..+.+.+-+......+
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp 272 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKP 272 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 764210 00 00011112222233333344445678899999999999999998888665544444
No 288
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.5e-11 Score=95.35 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=104.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC----CCCCCCCcee----eeeeEEEEE-------CCeEEEEEEEeCCCCcC
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNK----FPTDYIPTVF----DNFSANVAV-------DGSIVNLGLWDTAGQED 66 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~----~~~~~~~t~~----~~~~~~~~~-------~~~~~~l~l~D~~G~~~ 66 (211)
++...+++.++|+.++|||||.+++..-. |.....++.. +.--..+.+ .++..++.++|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 45567999999999999999999997532 4444333331 111112222 35778899999999976
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
.-...-....-.|..++|+|+.....-+.++-..+..+. ....+||+||.|.-.+... ..-..+...+.
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr-------~ski~k~~kk~ 151 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQR-------ASKIEKSAKKV 151 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhh-------hhHHHHHHHHH
Confidence 544433344556888999999876555554122222222 3445778888886543210 00111222223
Q ss_pred HHHh------CCceEEEecCCCC----CCHHHHHHHHHHHHcCCch
Q 028239 147 RKQI------GAAAYIECSSKTQ----QNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 147 ~~~~------~~~~~~~~sa~~~----~~v~~lf~~l~~~~~~~~~ 182 (211)
.+.+ +..|++++||.+| +++.+|.+.|..++.++.+
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 2222 2269999999999 7788888888777776543
No 289
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.36 E-value=2.5e-11 Score=100.01 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=112.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE--CCeEEEEEEEeCCCCcCccccccccccC----Cc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAV--DGSIVNLGLWDTAGQEDYSRLRPLSYRG----AD 79 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~l~l~D~~G~~~~~~~~~~~~~~----~d 79 (211)
-.|+|+|..++|||||+.+|.+..- ...+.+-.|.+ .+.- .+....+.+|-..|...+..+....+.. --
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 4899999999999999999876432 22333333322 1211 1233567899998876666655544432 24
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-----------------------------------C---------------
Q 028239 80 IFVLAFSLISRASYENVLKKWMPELRRFA-----------------------------------P--------------- 109 (211)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------~--------------- 109 (211)
.+++|.|++.|..+-+-+..|+..++... +
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 77889999998665544466655444211 0
Q ss_pred -------------CCcEEEEeeCCCcccCccccc-cccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 110 -------------NVPIVLVGTKLDLREDRGYLA-DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 110 -------------~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
.+|++||++|+|....-+... -..++-.+.....+.++-.+|+ ..+.+|++...+++.|+.+|.+
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence 169999999999754211100 0001111333446788889998 7888999999999999999999
Q ss_pred HHcCCchh
Q 028239 176 VVLQPPRR 183 (211)
Q Consensus 176 ~~~~~~~~ 183 (211)
.++...-.
T Consensus 262 ~l~~~~f~ 269 (472)
T PF05783_consen 262 RLYGFPFK 269 (472)
T ss_pred HhccCCCC
Confidence 98775543
No 290
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.33 E-value=8.6e-12 Score=98.19 Aligned_cols=130 Identities=17% Similarity=0.161 Sum_probs=86.8
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhhC--CCCcEEEEeeCCC
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS----------YENVLKKWMPELRRFA--PNVPIVLVGTKLD 121 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D 121 (211)
..+.++|.+||..-+..|.+.+.+++++|||.++++.+. +.+. ..+++.+-+.. .+.++|+++||.|
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS-~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES-LKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH-HHHHHHHhcCcccccCcEEEEeecHH
Confidence 667799999999999999999999999999999876433 2222 22333333322 6899999999999
Q ss_pred cccCcccc-----ccccCCccccHHHHHHHHHH-----hC----CceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 122 LREDRGYL-----ADHVGSNVITTAQGEELRKQ-----IG----AAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 122 l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
+..+.... ....-.+....+++..+.+. +. ..-...++|.+-.+|+.+|..+...+.....+.
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~ 350 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD 350 (354)
T ss_pred HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 86653321 11111222334444333322 11 123566899999999999999999887765443
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.33 E-value=2.1e-11 Score=106.62 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=77.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc------ee------eee-----eEEEEECCeEEEEEEEeCCCCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPT------VF------DNF-----SANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t------~~------~~~-----~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
+.-+|+++|+.++|||||+.+|+... ......+. .. ... ...+..++..+.+.|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 33479999999999999999998532 11110000 00 000 0111224445778899999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
+|.......++.+|++++|+|+......+.. ..|.... .. +.|.|+++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~-~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQAL-RE--RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHH-Hc--CCCeEEEEECchhhc
Confidence 9887777788999999999999876544443 3443322 22 567899999999763
No 292
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.32 E-value=8.4e-11 Score=96.68 Aligned_cols=163 Identities=22% Similarity=0.313 Sum_probs=119.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+.+++.++|+.++|||.|++.++++.+...+.++....+. ..+...+....+.+-|.+-. ...-....- ..||.+.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 45689999999999999999999999988876666644443 34455577777888888754 222222211 6799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
++||.+++.+|..+ ....+..... ..+|+++|++|+|+..... ...... .+++++++..+-+.+|.+.
T Consensus 501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q---------~~~iqp-de~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ---------RYSIQP-DEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh---------ccCCCh-HHHHHhcCCCCCeeeccCC
Confidence 99999999999987 4443333322 5899999999999976532 122223 7889999987777888885
Q ss_pred CCCHHHHHHHHHHHHcCCc
Q 028239 163 QQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~~ 181 (211)
... .++|..|...+..+.
T Consensus 569 ~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCC-chHHHHHHHhhhCCC
Confidence 333 889999998888776
No 293
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.32 E-value=6e-13 Score=101.08 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=59.7
Q ss_pred EEEEEeCCCCcCccccccccc--------cCCcEEEEEEECC---ChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCc
Q 028239 55 NLGLWDTAGQEDYSRLRPLSY--------RGADIFVLAFSLI---SRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122 (211)
Q Consensus 55 ~l~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl 122 (211)
.+.++|||||.++...|.... ...-++++++|.. ++..|-.. ++..+.... -+.|.|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~---~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS---LLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH---HHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH---HHHHHHHHhhCCCCEEEeeeccCc
Confidence 456999999977665444322 3455788888874 44444433 111111111 38999999999999
Q ss_pred ccCccccccccC------------CccccHHHHHHHHHHhCCc-eEEEecCCCCCCHHHHHHHHHHHH
Q 028239 123 REDRGYLADHVG------------SNVITTAQGEELRKQIGAA-AYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 123 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
.........+.. ...-......++...++.. .++.+|+++++++.+++..+-+.+
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 763210000000 0000111122233333555 799999999999999999887764
No 294
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.31 E-value=3.3e-11 Score=90.33 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=94.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-------c----c
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-------R----P 72 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~----~ 72 (211)
++|+|+|..|+||||++|.+++........ +.+.........+++.. +.|+||||....... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987433221 11223333444677854 569999995322211 0 1
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCcEEEEeeCCCcccCccccccccCCcccc---HHHHHHH
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLREDRGYLADHVGSNVIT---TAQGEEL 146 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~ 146 (211)
....+.|++++|+.+... +-.+ ...+..+..... -..++||.|..|...... ..+ .+. ....+++
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~--~~~----~l~~~~~~~l~~l 149 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDS--LED----YLKKESNEALQEL 149 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT--HHH----HHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecCcc-hHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccccc--HHH----HHhccCchhHhHH
Confidence 124578999999998832 3222 222233333221 235788889888655432 000 011 1234567
Q ss_pred HHHhCCceEEEecCC------CCCCHHHHHHHHHHHHcCCc
Q 028239 147 RKQIGAAAYIECSSK------TQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 147 ~~~~~~~~~~~~sa~------~~~~v~~lf~~l~~~~~~~~ 181 (211)
.+..+. .|+..+.+ ....+.+|++.+-+.+.++.
T Consensus 150 i~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 150 IEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 777777 78887776 34568888888877776654
No 295
>PTZ00258 GTP-binding protein; Provisional
Probab=99.31 E-value=7.7e-11 Score=94.95 Aligned_cols=84 Identities=20% Similarity=0.145 Sum_probs=59.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDY 67 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~ 67 (211)
...++|.++|.|++|||||+|+|.+.. ....+++++.+.....+.+.+. ...+.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456899999999999999999998765 4456667765555555554432 234789999995432
Q ss_pred cc----cc---cccccCCcEEEEEEEC
Q 028239 68 SR----LR---PLSYRGADIFVLAFSL 87 (211)
Q Consensus 68 ~~----~~---~~~~~~~d~~i~v~d~ 87 (211)
.+ +- -..++.+|++++|+|.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 21 11 1136789999999997
No 296
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.31 E-value=4.2e-12 Score=103.43 Aligned_cols=161 Identities=26% Similarity=0.397 Sum_probs=130.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.++|+.|+|..++|||+|+.+++.+.+.... ++.+..+.+.+.+++....+.+.|-+|... ..|..++|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 4689999999999999999999999886654 445677778888888888888999988433 3467789999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|.+.+..+|+.+ ..+...+..+. ..+|+++++++.-..... .+.+....+.+++.++..+.||++++.+
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence 999999999998 77766666444 578899999876443222 3457778888888888878999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
|.++...|+.+..+++..
T Consensus 174 Glnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.31 E-value=2.9e-11 Score=95.65 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=66.3
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
+.+.|+||+|...-.. .....+|.+++|.+...++..+.. .. ..+ ...-++|+||.|+.....
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~~~------ 211 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNKTA------ 211 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccchhH------
Confidence 6677999999753221 146679999999775555555544 11 111 122389999999875321
Q ss_pred CCccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 134 GSNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
. .-...+........ +..|++.+||+++.|++++++.+.+.+.
T Consensus 212 -a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 212 -A-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred -H-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 01111222222211 2148999999999999999999999764
No 298
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.31 E-value=6e-12 Score=111.32 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=80.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------------eeeee---EEEEE--------------CCe
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------------FDNFS---ANVAV--------------DGS 52 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~------------~~~~~---~~~~~--------------~~~ 52 (211)
.+.-+|+|+|+.++|||||+++|+... ......+.. +..+. ..+.+ ++.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 345599999999999999999998543 111110000 00000 11111 123
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
.+.++++||||+.+|.......++.+|++|+|+|+.++-..+.. ..|... ... +.|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~-~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHH-HHC--CCCEEEEEECCccc
Confidence 57788999999999988888888999999999999987665554 444433 333 79999999999986
No 299
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.31 E-value=1.4e-10 Score=92.88 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=91.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC----CCC-------------CCCCC----ceeeee----eEEEE-ECCeEEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN----KFP-------------TDYIP----TVFDNF----SANVA-VDGSIVNLGL 58 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~----~~~-------------~~~~~----t~~~~~----~~~~~-~~~~~~~l~l 58 (211)
..+-|.|+|+.++|||||+++|.+. ... ....+ |+...+ ...+. .++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3578999999999999999999987 222 22222 222222 11222 2456677889
Q ss_pred EeCCCCcCcc--------c--c-------------------cccccc-CCcEEEEEE-ECC----ChhhHHHHHHHHHHH
Q 028239 59 WDTAGQEDYS--------R--L-------------------RPLSYR-GADIFVLAF-SLI----SRASYENVLKKWMPE 103 (211)
Q Consensus 59 ~D~~G~~~~~--------~--~-------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~ 103 (211)
+||+|-..-. . + +...+. .+|+.|+|. |.+ .++.+.+....++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999932211 1 0 122344 788888888 653 124456666888888
Q ss_pred HhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 104 LRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 104 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+.+. ++|++++.|+.|-... .......++.++++. +++.+|+..
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~ 219 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVES 219 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHH
Confidence 8887 9999999999994322 233444566677775 777777654
No 300
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=4.9e-11 Score=90.22 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
....|+++|.+|+|||||++.+.+..-........+. + ...... ...+.++||||.- ..+ ....+.+|.+++|
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i-~i~~~~--~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I-TVVTGK--KRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E-EEEecC--CceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 4567999999999999999999865311111111111 1 111123 3556799999853 222 2236789999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCCcccCccccccccCCccccHHHHHH-HHH-HhCCceEEEecCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLREDRGYLADHVGSNVITTAQGEE-LRK-QIGAAAYIECSSK 161 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sa~ 161 (211)
+|++......+ ..+...+... +.|. ++|+||.|+.+.... ...+. ++.+. +.. .....+++.+||+
T Consensus 111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~~~~~-~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------LRKTK-KRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------HHHHH-HHHHHHHHHhhCCCCcEEEEeec
Confidence 99986554444 3344444443 5674 559999998643210 00011 11211 222 2233589999999
Q ss_pred CCC
Q 028239 162 TQQ 164 (211)
Q Consensus 162 ~~~ 164 (211)
+.-
T Consensus 180 ~~~ 182 (225)
T cd01882 180 VHG 182 (225)
T ss_pred cCC
Confidence 863
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.29 E-value=4.9e-11 Score=89.12 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=86.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC--------CCCC-Cceeeee----eEEEEEC-C-----------------
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP--------TDYI-PTVFDNF----SANVAVD-G----------------- 51 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~--------~~~~-~t~~~~~----~~~~~~~-~----------------- 51 (211)
.+....|.++|+.|+|||||+++++..... .+.. ....... ...+... +
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 345678999999999999999998754110 0000 0000000 0111111 1
Q ss_pred --eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239 52 --SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL 129 (211)
Q Consensus 52 --~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 129 (211)
....+.++|+.|.-... ..+....+..+.|+|+.+.+..... ....+ ..|.++++||+|+.....
T Consensus 99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~~-----~~a~iiv~NK~Dl~~~~~-- 165 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YPGMF-----KEADLIVINKADLAEAVG-- 165 (207)
T ss_pred ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hHhHH-----hhCCEEEEEHHHccccch--
Confidence 12355678888821111 1111234556778888765432211 11111 467799999999975321
Q ss_pred ccccCCccccHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHHH
Q 028239 130 ADHVGSNVITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
....+..+..+..+ ..+++++||+++.|++++|+++.+.
T Consensus 166 --------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 --------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred --------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 12233343344433 3589999999999999999999874
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=99.28 E-value=1.8e-11 Score=108.12 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=78.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------eeeee---------EEEEEC--------CeEEEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------FDNFS---------ANVAVD--------GSIVNLGLW 59 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~------~~~~~---------~~~~~~--------~~~~~l~l~ 59 (211)
+.-+|+++|+.++|||||+++|+... ......++. .++.. ..+.++ +..+.+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 44599999999999999999998632 111111110 00000 111222 225678899
Q ss_pred eCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 60 DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
||||+.+|.......++.+|++|+|+|+.+.-..+.. ..| ..+... +.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHH-HHHHHc--CCCEEEEEEChhhh
Confidence 9999998887777788999999999999887655543 334 333333 68999999999986
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=2.1e-11 Score=97.23 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=82.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCce--eeeee-EEEEECCeEEEEEEEeCCCCcC--ccc---cccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTV--FDNFS-ANVAVDGSIVNLGLWDTAGQED--YSR---LRPLSY 75 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~--~~~~~-~~~~~~~~~~~l~l~D~~G~~~--~~~---~~~~~~ 75 (211)
..++|+|+|.+|+|||||||+|.+-... +...+|. .++.. ..+.... .-.+.+||.||-.. +.. +...-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4689999999999999999999764321 1222222 11111 1122211 11256999999532 211 112246
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc--cCccccccccCCccccHHHHHHH----HHH
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR--EDRGYLADHVGSNVITTAQGEEL----RKQ 149 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~----~~~ 149 (211)
...|.+|++.+ +.|......+...+.+. +.|+.+|-+|.|.. ..++....... +.-..+++++. .++
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~-~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFN-EEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT---HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccC-HHHHHHHHHHHHHHHHHH
Confidence 67898888766 23333324555667666 89999999999962 21110000000 00111222222 222
Q ss_pred hCC--ceEEEecCCCC--CCHHHHHHHHHHHHcCCch
Q 028239 150 IGA--AAYIECSSKTQ--QNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 150 ~~~--~~~~~~sa~~~--~~v~~lf~~l~~~~~~~~~ 182 (211)
.+. .++|.+|+.+- .++..|.+.|.+.+-..++
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 232 47888999874 5688888888887766543
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.23 E-value=6.8e-10 Score=88.58 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=57.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeE---------------EEEEEEeCCCCcCccc-
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSI---------------VNLGLWDTAGQEDYSR- 69 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~~- 69 (211)
++|+++|.|++|||||+|++.+.. ....+++|+.+.....+.+.+.. ..+.+.|+||-..-.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999876 34456666655544444444321 2578999999643221
Q ss_pred ---cc---cccccCCcEEEEEEECC
Q 028239 70 ---LR---PLSYRGADIFVLAFSLI 88 (211)
Q Consensus 70 ---~~---~~~~~~~d~~i~v~d~~ 88 (211)
+- -..++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 11367899999999973
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.23 E-value=6e-10 Score=86.70 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=67.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEeCCCCcCcc-----
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYS----- 68 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----------~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----- 68 (211)
-.++|+|+|..|+|||||+|.|++....... ..+. .......+.-++..+.+.|+||||-...-
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999987633321 1111 12223344557889999999999921110
Q ss_pred ---------------------ccccc-cccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 69 ---------------------RLRPL-SYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 69 ---------------------~~~~~-~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..+.. .=...|+++++++.+.. -.-.++ ..+..+. ..+++|-|+.|.|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls---~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLS---KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHT---TTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhc---ccccEEeEEecccccC
Confidence 00000 11347899999997653 222232 3334444 4689999999999754
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=7e-11 Score=85.27 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=45.5
Q ss_pred EEEEEeCCCCcCc----cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239 55 NLGLWDTAGQEDY----SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120 (211)
Q Consensus 55 ~l~l~D~~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 120 (211)
.+.|+|+||-... ...+..++..+|++|+|.+++...+-.+. ..+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 3569999996432 24566678999999999999987665555 6666666655 44589999984
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.18 E-value=3.3e-10 Score=81.58 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
..+.|++..|+= .....+.-..+.-|+|+|++..+....- -...+. . .=++|+||.|+...-.
T Consensus 97 ~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~K---~gP~i~----~-aDllVInK~DLa~~v~------ 159 (202)
T COG0378 97 LDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPRK---GGPGIF----K-ADLLVINKTDLAPYVG------ 159 (202)
T ss_pred CCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCccc---CCCcee----E-eeEEEEehHHhHHHhC------
Confidence 456677777721 1111122233478999999887654321 000000 1 2389999999988754
Q ss_pred CCccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 134 GSNVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
.+.+...+-+++.+. .+++++|+++|+|++++++++....
T Consensus 160 ----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ----ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 555666666666653 6999999999999999999987654
No 308
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=4.4e-09 Score=78.59 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=108.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-------cccccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-------RLRPLS 74 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~ 74 (211)
++...||+++|-|.+|||||+..+.... -...|..|+.+.....+.+++.. +++.|.||--.-. ...-..
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEE
Confidence 4556799999999999999999998765 34567778888888889999955 5599999942221 122335
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC----CC----------------------------------------
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA----PN---------------------------------------- 110 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~---------------------------------------- 110 (211)
.+-+|.+++|.|++..+.-..+++.=++.+--.. |+
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae 216 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE 216 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce
Confidence 6889999999999876554433222222221111 22
Q ss_pred ----------------------CcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q 028239 111 ----------------------VPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKA 168 (211)
Q Consensus 111 ----------------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 168 (211)
++.+-|-||+|. ++.++...+++..+. +.+|+.-.-|++.
T Consensus 217 vl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ 278 (364)
T KOG1486|consen 217 VLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDR 278 (364)
T ss_pred EEEecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHH
Confidence 244445555553 677888888888765 5678888899999
Q ss_pred HHHHHHHHHcC
Q 028239 169 VFDTAIKVVLQ 179 (211)
Q Consensus 169 lf~~l~~~~~~ 179 (211)
+++.+-..+--
T Consensus 279 lle~iWe~l~L 289 (364)
T KOG1486|consen 279 LLERIWEELNL 289 (364)
T ss_pred HHHHHHHHhce
Confidence 99988887743
No 309
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=3.1e-10 Score=83.47 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=79.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-----ccccccccCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-----RLRPLSYRGA 78 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----~~~~~~~~~~ 78 (211)
.-||+++|..|+|||++-..++.+...-+ ..+.+.+.....+.+-|. +.+.+||++|++.+- ......++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999999888876553222 112111222222223222 568899999997432 3456679999
Q ss_pred cEEEEEEECCChhhHHHHHHHHH---HHHhhhCCCCcEEEEeeCCCcccC
Q 028239 79 DIFVLAFSLISRASYENVLKKWM---PELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+++++|||++..+-..++ ..+- +.+.+..|...+....+|.|+...
T Consensus 83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 999999999887665555 4443 445555577778888999999764
No 310
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.3e-09 Score=89.81 Aligned_cols=159 Identities=14% Similarity=0.081 Sum_probs=97.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC--------------------CCC----CCCCCce------eeeeeEEEEECCeE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN--------------------KFP----TDYIPTV------FDNFSANVAVDGSI 53 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~--------------------~~~----~~~~~t~------~~~~~~~~~~~~~~ 53 (211)
..++..+++|+.++|||||+.+++.. +.. .....|. ..-...+.+++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35789999999999999999988741 100 0011111 11122344555566
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---HHHH--HHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---YENV--LKKWMPELRRFAPNVPIVLVGTKLDLREDRGY 128 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~--~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 128 (211)
..+.|+|+||+..|-.........+|+.++|+|++..+- |+.- .......+ +...-..+||++||.|+..-...
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCcceEEEEeecccccCccHH
Confidence 788899999999988877778889999999999865321 1100 01111222 22234567999999999873220
Q ss_pred cccccCCccccHHHHHHHH-HHhCC----ceEEEecCCCCCCHHHH
Q 028239 129 LADHVGSNVITTAQGEELR-KQIGA----AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~sa~~~~~v~~l 169 (211)
... ........|. +..+. +.|+.+|+..|+|+...
T Consensus 334 -----RF~-eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 -----RFE-EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -----HHH-HHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 000 0011122233 44443 47999999999997654
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.7e-10 Score=88.13 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCCCce---eee-eeEEEEECCeEEEEEEEeCCCCc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS--NKFPT---------------DYIPTV---FDN-FSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~--~~~~~---------------~~~~t~---~~~-~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
-..+||-+|.+|||||-..|+- +.+.. ++.... +.. .+..+..+...+.+++.|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 4678999999999999988762 21100 111111 111 12233444445778899999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
+|...+...+..+|.+++|+|+...-.-+. .++++..+. .++|++-.+||.|..
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrl--R~iPI~TFiNKlDR~ 146 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRL--RDIPIFTFINKLDRE 146 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhh--cCCceEEEeeccccc
Confidence 999888888999999999999877655444 345554443 499999999999953
No 312
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2e-10 Score=95.77 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=85.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CCCceeeeeeE---------EE---EECCeEEEEEEEeC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---------YIPTVFDNFSA---------NV---AVDGSIVNLGLWDT 61 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~---------~~---~~~~~~~~l~l~D~ 61 (211)
+....+|.++|+-+.|||+|+..|.....+.. |+.+...+... ++ ...++.+.++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34567899999999999999999987664332 11111111111 11 12468899999999
Q ss_pred CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
|||-.|.......++.+|++++|+|+.+.-.+.. +++++..-+ .+.|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHH
Confidence 9999999988889999999999999999887776 333332222 37999999999994
No 313
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.9e-10 Score=97.75 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CC---CCCCC-----ce------eeee-e--EEEEECCeEEEEEEEeCCC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FP---TDYIP-----TV------FDNF-S--ANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~---~~~~~-----t~------~~~~-~--~~~~~~~~~~~l~l~D~~G 63 (211)
.++.-+|.++|+.++|||||..+++-.. +. +...+ .. +.+. + .++...+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 3456799999999999999999997422 11 11100 00 1111 1 1233343 47788999999
Q ss_pred CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
|-+|.......++-+|++++|+|+...-..+.- ..|.+... . ++|.++++||+|..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~-~--~vp~i~fiNKmDR~ 141 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK-Y--GVPRILFVNKMDRL 141 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh-c--CCCeEEEEECcccc
Confidence 999999999999999999999999887665554 45554433 3 79999999999953
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.11 E-value=6.3e-10 Score=87.71 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH 132 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 132 (211)
.+.+.|+||+|.-... ......+|.++++-... +..++ ..+...+. +.|.++|+||+|+......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~~---- 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATNV---- 190 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhHH----
Confidence 3677799999853211 22466788888885433 33443 23333332 5778999999998754210
Q ss_pred cCCccccHH---HHHHHHHH-hC-CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 133 VGSNVITTA---QGEELRKQ-IG-AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 133 ~~~~~~~~~---~~~~~~~~-~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
...... ....+... .+ ..+++.+||+++.|++++++++.+...
T Consensus 191 ---~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 ---TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ---HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000000 00111111 11 126899999999999999999988744
No 315
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.9e-10 Score=86.80 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=103.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC---CCC----------CCCCce----ee-----ee--eEEEEEC----CeEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK---FPT----------DYIPTV----FD-----NF--SANVAVD----GSIVN 55 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~---~~~----------~~~~t~----~~-----~~--~~~~~~~----~~~~~ 55 (211)
+..++|.++|+..-|||||..+|.+-- +.+ .|..+. .+ .+ ....... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 357899999999999999999987521 111 011110 00 00 0011111 22355
Q ss_pred EEEEeCCCCcCccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD 131 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 131 (211)
+.|.|+|||+-.-...-.-..-.|+.++|+.++.+ ++-+.+ .-++.+ .-..+|++=||.|+...+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIi----gik~iiIvQNKIDlV~~E~---- 157 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEII----GIKNIIIVQNKIDLVSRER---- 157 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhh----ccceEEEEecccceecHHH----
Confidence 77999999987665444445567999999998763 333322 111222 1356788899999976432
Q ss_pred ccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCch
Q 028239 132 HVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
-.-.++++.+|.+--.+ .|++.+||.++.|++.+++.|.+.+-.+.+
T Consensus 158 ----AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 158 ----ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred ----HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 01233445555544422 499999999999999999999999876543
No 316
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.09 E-value=2.4e-09 Score=87.49 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=81.2
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhhC-CCCcEEEEeeCCCc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS----------YENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl 122 (211)
..+.++|.+|+...+..|..++.+++++|||+++++.+. +.+.+..|-..+.... .+.|+||++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 456799999999999999999999999999999865322 4444344444444333 68999999999997
Q ss_pred ccCccccc-------cccCCcc--ccHHHHHHHHHHh-----------CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 123 REDRGYLA-------DHVGSNV--ITTAQGEELRKQI-----------GAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 123 ~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
....-... ++.. +. .+.+.+..+.... ..+.++.++|.+..++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~-g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYT-GDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGG-SH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCC-CCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 54322111 1111 11 3344444443322 122466899999999999999887643
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.5e-09 Score=87.03 Aligned_cols=155 Identities=16% Similarity=0.090 Sum_probs=103.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF----PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
-|+..|+..-|||||+..+.+..- ...-.+++.+...+....++ +.+.|+|.||++++-+.....+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 477889999999999999987541 11223333332222333334 467799999999987766667778999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh--CCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI--GAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~ 161 (211)
|++.++.-..+.. +.+ ..+.. ......++|+||+|..+... ..+...++.... ...+++.+|+.
T Consensus 80 vV~~deGl~~qtg-EhL-~iLdl-lgi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 80 VVAADEGLMAQTG-EHL-LILDL-LGIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred EEeCccCcchhhH-HHH-HHHHh-cCCCceEEEEeccccccHHH-----------HHHHHHHHHhhcccccccccccccc
Confidence 9999776555543 222 22222 22445699999999876532 122222332222 23478999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 028239 162 TQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~ 178 (211)
+|+|+++|.+.|....-
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999998874
No 318
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.2e-09 Score=81.84 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=102.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC---C-------CCC-------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN---K-------FPT-------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~---~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
..+.+|..+|+.+-|||||..++..- . +.. ...+.+...-...+...+..|- ..|+||+.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhya--hVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYA--HVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEE--eccCCChHH
Confidence 35789999999999999999877531 1 110 1111111111122333454444 899999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
|-...-....+.|+.|+|+++++..-=+.. ++. .+-++. ..|. ++++||+|+.++.+ .-..-..+.++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi-Llarqv--Gvp~ivvflnK~Dmvdd~e-------llelVemEvre 156 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHI-LLARQV--GVPYIVVFLNKVDMVDDEE-------LLELVEMEVRE 156 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh-hhhhhc--CCcEEEEEEecccccCcHH-------HHHHHHHHHHH
Confidence 877665566789999999999987543332 221 122222 5654 67779999987543 11234466788
Q ss_pred HHHHhCC----ceEEEecCCCC--------CCHHHHHHHHHHHHcCCc
Q 028239 146 LRKQIGA----AAYIECSSKTQ--------QNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 146 ~~~~~~~----~~~~~~sa~~~--------~~v~~lf~~l~~~~~~~~ 181 (211)
+...++. .|++.-||..- ..+.+|++.+..++..+.
T Consensus 157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 8888875 46777666531 235667777666665543
No 319
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=1.1e-09 Score=80.82 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=65.3
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
+..++..+++.+|++++|+|++++..-.. ..+.....+.|+++|+||+|+.... ........+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 46677788999999999999988652111 1122222478999999999986532 223333333
Q ss_pred H-----HHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 147 R-----KQIGA--AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 147 ~-----~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
. +..+. .+++.+||+++.|++++++.+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 22221 2689999999999999999999876
No 320
>PRK00098 GTPase RsgA; Reviewed
Probab=99.01 E-value=9.3e-09 Score=80.98 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=66.0
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
.+.++|.+++|+|+.+++.+......|+..+... ++|+++|+||+|+.+.. ....+..+..+..+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-
Confidence 3589999999999998876665547777766543 89999999999996332 112233344455665
Q ss_pred eEEEecCCCCCCHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
+++.+||+++.|++++++.+..
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred eEEEEeCCCCccHHHHHhhccC
Confidence 8999999999999999987743
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.01 E-value=2.1e-09 Score=83.18 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=82.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--------CCCCCCceee--ee----eEEEEECC------------------
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--------PTDYIPTVFD--NF----SANVAVDG------------------ 51 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--------~~~~~~t~~~--~~----~~~~~~~~------------------ 51 (211)
...+-|.|+|++|+|||||++++++.-. ..+. .+..+ .. ...+.++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~-~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc-CcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 3456789999999999999988875421 1111 11100 00 01111110
Q ss_pred --eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239 52 --SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL 129 (211)
Q Consensus 52 --~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 129 (211)
....+.|+++.|+-.... .+--..+.-+.++++...+... ..+-..+ ..+-++|+||+|+.....
T Consensus 181 ~~~~~d~liIEnvGnLvcPa---~fdlge~~~v~vlsV~eg~dkp---lKyp~~f-----~~ADIVVLNKiDLl~~~~-- 247 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCPA---SFDLGEKHKVAVLSVTEGEDKP---LKYPHMF-----AAASLMLLNKVDLLPYLN-- 247 (290)
T ss_pred hhcCCcEEEEECCCCccCCC---ccchhhceeEEEEECccccccc---hhccchh-----hcCcEEEEEhHHcCcccH--
Confidence 123444777777411111 0111123345677776543211 1111112 355699999999975321
Q ss_pred ccccCCccccHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 130 ADHVGSNVITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
...+...+..+.. ...+++.+||++|+|++++.+||...
T Consensus 248 --------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 248 --------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred --------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2233333333333 34589999999999999999999764
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.98 E-value=8e-09 Score=87.32 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=71.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-------c---c
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDY--IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-------L---R 71 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~---~ 71 (211)
..++|+|+|.+|+||||++|++++.. +.... ..|.. ........++ ..+.|+||||...... . .
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 45799999999999999999999976 32221 22222 1222233455 4567999999654321 0 1
Q ss_pred cccc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccC
Q 028239 72 PLSY--RGADIFVLAFSLISRAS-YENVLKKWMPELRRFA---PNVPIVLVGTKLDLRED 125 (211)
Q Consensus 72 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~ 125 (211)
..++ ..+|++|+|..++.... .++ ..++..+.... .-..+|||.|+.|...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 1122 25899999988764332 222 24444454443 13457999999998753
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=3.5e-08 Score=78.06 Aligned_cols=83 Identities=19% Similarity=0.104 Sum_probs=57.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC----------------CeEEEEEEEeCCCCcCc-
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVD----------------GSIVNLGLWDTAGQEDY- 67 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~----------------~~~~~l~l~D~~G~~~~- 67 (211)
.+++.|+|.|++|||||.|++..... ..+|+.++.+.......+. -....+.++|.+|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998774 3567777644433333222 13466789999984322
Q ss_pred ---ccccc---ccccCCcEEEEEEECC
Q 028239 68 ---SRLRP---LSYRGADIFVLAFSLI 88 (211)
Q Consensus 68 ---~~~~~---~~~~~~d~~i~v~d~~ 88 (211)
..+=. ..++++|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22212 2368999999999975
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.97 E-value=4.8e-09 Score=79.59 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=45.2
Q ss_pred EEEEEEeCCCCcCc---c----------cccccccc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239 54 VNLGLWDTAGQEDY---S----------RLRPLSYR-GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK 119 (211)
Q Consensus 54 ~~l~l~D~~G~~~~---~----------~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 119 (211)
..|.++|+||-... . .+...+++ ..+++++|+|++...+-.+. ..+...+... ..|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 56789999997422 0 12334566 45689999998654333332 3444445444 7899999999
Q ss_pred CCcccC
Q 028239 120 LDLRED 125 (211)
Q Consensus 120 ~Dl~~~ 125 (211)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998764
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.94 E-value=5e-10 Score=84.47 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=86.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC------C-----CCCCCCCce----eee------------eeEEEEECC------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN------K-----FPTDYIPTV----FDN------------FSANVAVDG------ 51 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~------~-----~~~~~~~t~----~~~------------~~~~~~~~~------ 51 (211)
+.+.|.|-|+||+|||||++.|... + +.+..+.|. ++. |-..+...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4679999999999999999987531 1 111111121 111 111221111
Q ss_pred ------------eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239 52 ------------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK 119 (211)
Q Consensus 52 ------------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 119 (211)
..+.+.|++|.|--.-. .....-+|.+++|....-.+..+.+ +.-+-++. =|+|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~-KaGimEia-------Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAI-KAGIMEIA-------DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB--TTHHHH--------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHH-hhhhhhhc-------cEEEEeC
Confidence 12556688888732211 1235679999999998877777766 33222332 2889999
Q ss_pred CCcccCccccccccCCccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 120 LDLREDRGYLADHVGSNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.|....+. ...+........ +..|++.+||.++.|++++++.|.++...
T Consensus 177 aD~~gA~~-----------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 177 ADRPGADR-----------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp -SHHHHHH-----------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CChHHHHH-----------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99655432 222222222221 12489999999999999999999886544
No 326
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.94 E-value=2.7e-08 Score=77.99 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=66.4
Q ss_pred ccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 73 LSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
..+.++|.+++|+|+.++. ++..+ ..|+..+... ++|+++|+||+|+.+.. .......+....+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g 138 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALALG 138 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhCC
Confidence 3478999999999999987 77777 7787766654 79999999999996531 1112223334456
Q ss_pred CceEEEecCCCCCCHHHHHHHHHH
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
. +++.+||+++.|+++++..+..
T Consensus 139 ~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 139 Y-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred C-eEEEEECCCCccHHHHHhhhcc
Confidence 5 8999999999999999987764
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=2.5e-09 Score=76.29 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=62.6
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
++...++++|++++|+|++++....+ ..+...+.. .+.|+++|+||+|+..... . .....+.+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~~~ 68 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV----------L--EKWKSIKES 68 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH----------H--HHHHHHHHh
Confidence 44556778999999999988654333 222222322 2689999999999854211 1 111123333
Q ss_pred hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 150 IGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
.+. +++.+||+++.|++++++.+.+.+.
T Consensus 69 ~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 69 EGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 444 7899999999999999999988764
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.89 E-value=2.6e-08 Score=76.45 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=91.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC----C-------CCCCCCCcee----eeee------------EEEEECC------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN----K-------FPTDYIPTVF----DNFS------------ANVAVDG------ 51 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~----~-------~~~~~~~t~~----~~~~------------~~~~~~~------ 51 (211)
+...|.|-|.||+|||||+..|... . +.+..+.|.+ +... ......+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 4568999999999999999877531 1 2222222221 1111 1111111
Q ss_pred ------------eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239 52 ------------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK 119 (211)
Q Consensus 52 ------------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 119 (211)
-.+.+.|++|.|--.-. .....-+|.+++|.=..-.+..+-+ +.-+-++.. |+|+||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~i-K~GimEiaD-------i~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGI-KAGIMEIAD-------IIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHH-Hhhhhhhhh-------eeeEec
Confidence 22666688888742211 2245568999999887777777776 333223322 889999
Q ss_pred CCcccCccccccccCCccccHHH--HHH-----HHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 120 LDLREDRGYLADHVGSNVITTAQ--GEE-----LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.|....+. .-.+. +.+ +....+..|.+.+||.+|+|++++++.+.+....
T Consensus 199 aD~~~A~~----------a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGAEK----------AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhHHH----------HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 99654321 11111 111 1112233588999999999999999999887644
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=98.87 E-value=2.1e-08 Score=80.36 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=65.1
Q ss_pred cccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
+....+.++|.+++|+|+.++. +...+ ..|+..... .++|+++|+||+|+..... .....+...
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~ 146 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ 146 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence 3344588999999999998876 34344 666655533 4899999999999964321 111222334
Q ss_pred HhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 149 QIGAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 149 ~~~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
..+. +++.+||+++.|++++++.+...+
T Consensus 147 ~~g~-~v~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 147 QWGY-QPLFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred hcCC-eEEEEEcCCCCCHHHHhhhhccce
Confidence 5566 899999999999999998886543
No 330
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.5e-08 Score=78.58 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=100.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCce-----e-eeeeEEEEE----------CC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY------------------IPTV-----F-DNFSANVAV----------DG 51 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~------------------~~t~-----~-~~~~~~~~~----------~~ 51 (211)
.+|++++|...+|||||+..|..+...+.. .+.. + +.....+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 569999999999999999888755432210 0000 0 000111111 12
Q ss_pred eEEEEEEEeCCCCcCcccccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc-
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYR--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY- 128 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 128 (211)
....+.++|.+|+.+|...+-..+. -.|..++|++++..-.... +.-+..+... ++|+.++.+|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 3355679999999999886655443 3678888888877654443 2333444555 8999999999999775211
Q ss_pred -c------------ccccCCccccHHHHHHHHHHh---CCceEEEecCCCCCCHHHHHHH
Q 028239 129 -L------------ADHVGSNVITTAQGEELRKQI---GAAAYIECSSKTQQNVKAVFDT 172 (211)
Q Consensus 129 -~------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~v~~lf~~ 172 (211)
+ .....+..-+..++...+++. +..|+|.+|+..|+|+.-+...
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 0 111223333444554444443 4579999999999998855433
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.85 E-value=7.7e-09 Score=79.98 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=55.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCccc---
Q 028239 9 CVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYSR--- 69 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~~--- 69 (211)
|+++|.|++|||||+|++.+... ...+++++.+.....+.+.+. ...++++|+||-..-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998763 445666665555555555443 23588999999643221
Q ss_pred -cccc---cccCCcEEEEEEEC
Q 028239 70 -LRPL---SYRGADIFVLAFSL 87 (211)
Q Consensus 70 -~~~~---~~~~~d~~i~v~d~ 87 (211)
+-.. .++.+|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 1111 35789999999986
No 332
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.2e-08 Score=71.66 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
+++++|.+|+|||||+|++.+............+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877543211111222233444544 3569999995
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.81 E-value=3.7e-08 Score=78.92 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=65.9
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
..++|.+++|++.+...++..+ ..|+..... .++|.++|+||+|+..... ...........+..+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 4569999999999887888888 888765543 3799999999999965321 0011222233345565 8
Q ss_pred EEEecCCCCCCHHHHHHHHHHH
Q 028239 155 YIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
++++||+++.|++++++.+...
T Consensus 185 v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhhC
Confidence 9999999999999999988754
No 334
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.80 E-value=1.4e-08 Score=82.05 Aligned_cols=96 Identities=23% Similarity=0.393 Sum_probs=68.5
Q ss_pred CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG 143 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (211)
.+.|..+...+.+.++++++|+|+.+.+. .|...+.+...+.|+++|+||+|+.... ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 45677777778889999999999977552 2333333333478999999999986532 233333
Q ss_pred H----HHHHHhCCc--eEEEecCCCCCCHHHHHHHHHHH
Q 028239 144 E----ELRKQIGAA--AYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 144 ~----~~~~~~~~~--~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
. ++++..+.. .++.+||+++.|++++|+.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 345555542 48999999999999999998764
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.80 E-value=1.1e-08 Score=80.78 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=98.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---------------eeeeeEEEEEC------------------
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---------------FDNFSANVAVD------------------ 50 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~---------------~~~~~~~~~~~------------------ 50 (211)
..++.|.+.|+.+.|||||+-.|.-+...+..-.+- .+.....+-++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 457899999999999999999887655433211110 00000011111
Q ss_pred ---CeEEEEEEEeCCCCcCccccccc--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 51 ---GSIVNLGLWDTAGQEDYSRLRPL--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 51 ---~~~~~l~l~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
...-.+.+.|+.|++.|.+.+-. +=.+.|..++|+.+++..+--.- +++ -..... ..|++++.||+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHL-gi~~a~--~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHL-GIALAM--ELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhh-hhhhhh--cCCEEEEEEecccCcH
Confidence 12245669999999998764433 44679999999999998765543 222 222222 8999999999998765
Q ss_pred cccc------------ccccCCccccHHHH--HHHHHHh--CCceEEEecCCCCCCHHHHHHHH
Q 028239 126 RGYL------------ADHVGSNVITTAQG--EELRKQI--GAAAYIECSSKTQQNVKAVFDTA 173 (211)
Q Consensus 126 ~~~~------------~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l 173 (211)
.... ......-.-+...+ ...+.+. +.+|+|.+|+.+|+|++-|.+.+
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 4321 00000000011111 1112222 24789999999999998555444
No 336
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=4.4e-08 Score=72.79 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCCCceeeee-eEEEEECCeEEEEEEEeCCCCcC---c
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPT---------DYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED---Y 67 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---------~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~---~ 67 (211)
|..-..++|+|+|.+|.|||||+|.++...... .++.|..... ...+.-++...++.++||||--+ .
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 344567999999999999999999998654222 2222222222 23445578889999999999211 1
Q ss_pred ccc-----------------------cccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 68 SRL-----------------------RPLSYR--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 68 ~~~-----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
... ++..+. .++++++.+-.+. .++..+...+++.+.+. ..+|-|+-|.|-
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIakaDt 196 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIAKADT 196 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEeeccc
Confidence 111 222332 3567777766543 33333323333444433 556777778884
No 337
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.78 E-value=2.7e-07 Score=72.77 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=70.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCceee-eeeEEEEECCeEEEEEEEeCCCCcCc---cc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDY---SR 69 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----------~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~---~~ 69 (211)
...++|+++|+.|+|||||+|.|++....+.. .++... .....+.-++..+.|.++||||--++ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 35689999999999999999999987433321 122211 12223344678899999999992111 00
Q ss_pred cc-----------------------cccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 70 LR-----------------------PLSY--RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 70 ~~-----------------------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
.| ...+ ..+|++++.+..+.. .+..+.-..+..+.. .+.+|=|+-|.|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK---RVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc---ccCeeeeeeccccCC
Confidence 11 1011 236888888876432 222221234444444 577888889999643
No 338
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.1e-07 Score=73.74 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=70.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--------CCC-ce-eeeeeEEEEECCeEEEEEEEeCCCCcCc-c-----
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD--------YIP-TV-FDNFSANVAVDGSIVNLGLWDTAGQEDY-S----- 68 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~--------~~~-t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~----- 68 (211)
..++++++|+.|.|||||+|.|+...+.+. ... +. .......+.-+|..+.|+++||||--+. +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 458999999999999999999998754332 111 11 1122223344688899999999992111 0
Q ss_pred -------------------cccccccc--CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 69 -------------------RLRPLSYR--GADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 69 -------------------~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
......+. .+|++++.+..+.. -.-.++ ..+..+. ..+++|-|+-|.|...
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~~Mk~l~---~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI--EFMKKLS---KKVNLIPVIAKADTLT 172 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--HHHHHHh---ccccccceeeccccCC
Confidence 11111222 47888988886543 222232 3333343 3577788888999644
No 339
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=78.23 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=95.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCCc---------Ccccccccc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQE---------DYSRLRPLS 74 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~---------~~~~~~~~~ 74 (211)
..-|.++|..++|||||++.|.... ++.+....+.+........ ++.. +.+-||.|.- .|....+ -
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~ATLe-e 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQATLE-E 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE--EEEeechhhhhhCcHHHHHHHHHHHH-H
Confidence 4568999999999999999999655 3444444444444333333 3333 4488999831 1222222 2
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCc----EEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVP----IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
...+|.++-|.|++.|+.-... ......++... +..| ++=|-||.|...... .. ++
T Consensus 255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e~------E~ 315 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------EE------EK 315 (410)
T ss_pred HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC------------cc------cc
Confidence 4579999999999999876655 55556666553 3333 455667777654321 11 11
Q ss_pred hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 150 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+ .-+.+||++|+|++++.+.+-.+...
T Consensus 316 n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 316 N---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred C---CccccccccCccHHHHHHHHHHHhhh
Confidence 1 24679999999999999888776644
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=4.7e-08 Score=69.84 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=59.3
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
.+.++|.+++|.|+.++..-.+ ..+...+.....+.|+++|+||+|+..... .......+.+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 3678999999999988743222 233344443334689999999999964321 12223333332222
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
..+.+||+.+.|++++++.+.+.+
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 357799999999999999997754
No 341
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1e-07 Score=74.22 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhc----CC------CCC-------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTS----NK------FPT-------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~----~~------~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
+..+.+|.-+|+..-|||||-.++.. .. |.+ ...+.+.......+....+.|- =.||||+.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence 34678999999999999999987752 11 110 1111111111122222333333 68999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
+|-.....-..+.|+.|+|+.++|..-=+.- ++++ +.+...-..++|.+||.|+.++.+ ..++-+.++++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RE 198 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRE 198 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHH
Confidence 9887666667889999999999997644433 3322 222222245678889999985533 12244566788
Q ss_pred HHHHhCC----ceEEEecC---CCCC-------CHHHHHHHHHHHHcCCc
Q 028239 146 LRKQIGA----AAYIECSS---KTQQ-------NVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 146 ~~~~~~~----~~~~~~sa---~~~~-------~v~~lf~~l~~~~~~~~ 181 (211)
+...++. .|++.-|| .+|. .|.+|++.+-.++..+.
T Consensus 199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~ 248 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE 248 (449)
T ss_pred HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence 8888865 57777554 4553 25666666666555443
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.70 E-value=5.7e-08 Score=70.32 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G 63 (211)
.++++++|.||+|||||+|++.+... ....++++.. ...+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence 47999999999999999999998763 2233333322 22223332 366999999
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=7.2e-08 Score=68.85 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=35.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G 63 (211)
..++|+++|.+|+|||||+|+|.+... .....+++.. ...+..+. . +.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~-~--~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK-R--IYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC-C--EEEEECcC
Confidence 467899999999999999999998653 2233333221 12222322 2 45999999
No 344
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.6e-08 Score=75.78 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=77.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eeeeEEEEE------CC--------------------------
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAV------DG-------------------------- 51 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~------~~-------------------------- 51 (211)
..-|+++|.=..||||+++.|+.+.++.-..+... +.+...+.- +|
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 35799999999999999999999988765444332 222211111 11
Q ss_pred -------eEEEEEEEeCCCCc-----------CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE
Q 028239 52 -------SIVNLGLWDTAGQE-----------DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI 113 (211)
Q Consensus 52 -------~~~~l~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 113 (211)
..-.+.|+||||-- .|......|...+|.|+++||...-+--.+. ...++.++.. .-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 11346699999921 2233445577899999999998655444443 4445555544 3445
Q ss_pred EEEeeCCCcccCc
Q 028239 114 VLVGTKLDLREDR 126 (211)
Q Consensus 114 ivv~nK~Dl~~~~ 126 (211)
-||.||.|..+.+
T Consensus 215 RVVLNKADqVdtq 227 (532)
T KOG1954|consen 215 RVVLNKADQVDTQ 227 (532)
T ss_pred EEEeccccccCHH
Confidence 6889999987754
No 345
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.62 E-value=4e-07 Score=72.00 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=85.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC------------------CCCCceeeeee--------------------EEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPT------------------DYIPTVFDNFS--------------------ANV 47 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~------------------~~~~t~~~~~~--------------------~~~ 47 (211)
+++|+++|...+|||||+..|.++...+ ...+..+..+. ..-
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 5799999999999999998776544322 11111111110 000
Q ss_pred EECCeEEEEEEEeCCCCcCcccccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 48 AVDGSIVNLGLWDTAGQEDYSRLRPLS--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 48 ~~~~~~~~l~l~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.-.+....+.|+|.+|+++|...+-.. =+-.|..++++-++-.--.-.- +++ .+-... .+|+.+|.+|+|....
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTK-EHL-gLALaL--~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTK-EHL-GLALAL--HVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccH-Hhh-hhhhhh--cCcEEEEEEeeccCcH
Confidence 011223456799999999998654322 2345666666654432211111 111 111112 7899999999998765
Q ss_pred ccccccccCCccccHHH---HHHHHHHhC-------------------------CceEEEecCCCCCCHHHHHHH
Q 028239 126 RGYLADHVGSNVITTAQ---GEELRKQIG-------------------------AAAYIECSSKTQQNVKAVFDT 172 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------------~~~~~~~sa~~~~~v~~lf~~ 172 (211)
+. ..+- ...+.++.+ .+|+|.+|..+|+|+..|...
T Consensus 289 Ni-----------LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 289 NI-----------LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HH-----------HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 42 2222 122222211 368899999999999855433
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=3.4e-07 Score=65.24 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=55.7
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 79 DIFVLAFSLISRASYENVLKKWM-PELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
|.+++|+|+.++.+.... .+. ..+.. .+.|+++|+||+|+..... .......+..... ..++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence 689999999888665532 221 12222 3799999999999854321 1111222322323 37899
Q ss_pred ecCCCCCCHHHHHHHHHHHHc
Q 028239 158 CSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+||+++.|++++++.+.+...
T Consensus 65 vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred EeccCCcChhhHHHHHHHHhH
Confidence 999999999999999987653
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.1e-07 Score=75.70 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=74.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeee-----------------------------------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDN----------------------------------------- 42 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 42 (211)
.+.||++.|...+||||++|+++..++ +...-+++.-.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 568999999999999999999997663 22222221000
Q ss_pred ---eeEEEEECCe----EEEEEEEeCCCCc---CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc
Q 028239 43 ---FSANVAVDGS----IVNLGLWDTAGQE---DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP 112 (211)
Q Consensus 43 ---~~~~~~~~~~----~~~l~l~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 112 (211)
..+.++-++. .=.+.++|.||-+ ...+-...+..++|++|+|.++.+..+..+ ..++...... ++.
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CCc
Confidence 0011111110 0135588999953 333444557889999999999988777666 4554444444 556
Q ss_pred EEEEeeCCCcccCc
Q 028239 113 IVLVGTKLDLREDR 126 (211)
Q Consensus 113 ~ivv~nK~Dl~~~~ 126 (211)
+.++-||.|....+
T Consensus 264 iFIlnnkwDasase 277 (749)
T KOG0448|consen 264 IFILNNKWDASASE 277 (749)
T ss_pred EEEEechhhhhccc
Confidence 67777888987653
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=1.6e-07 Score=68.08 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=37.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
..++++++|.+++|||||++++.+..+... ..+++ .....+.++ ..+.+|||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999998765322 22222 112223333 23679999994
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.57 E-value=2.4e-07 Score=72.33 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
..++++++|.||+|||||+|+|.+.... ...++++. ....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999986632 22333222 223334433 3569999997
No 350
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.57 E-value=6.4e-06 Score=66.51 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=91.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-----------------CCC----CCCCceeeee----eEEEEE-CCeEEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK-----------------FPT----DYIPTVFDNF----SANVAV-DGSIVNLGLW 59 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~-----------------~~~----~~~~t~~~~~----~~~~~~-~~~~~~l~l~ 59 (211)
.+=|.|+||..+|||||++||.... ++. ...-|+...| ...+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 4568999999999999999997532 111 1222222222 123444 4778999999
Q ss_pred eCCCC--------cCc--ccc----c---------------cccccC--CcEEEEEEECC----ChhhHHHHHHHHHHHH
Q 028239 60 DTAGQ--------EDY--SRL----R---------------PLSYRG--ADIFVLAFSLI----SRASYENVLKKWMPEL 104 (211)
Q Consensus 60 D~~G~--------~~~--~~~----~---------------~~~~~~--~d~~i~v~d~~----~~~s~~~~~~~~~~~~ 104 (211)
||.|- ..- .++ | ...++. .-++++.-|-+ .++++.++.++.++.|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99981 110 001 1 001111 12555555532 2577888888889999
Q ss_pred hhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 105 RRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 105 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
... +.||++++|-.+-... -+.+.+.++.++|+. +.+.+++..
T Consensus 177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~ 219 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQ 219 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHH
Confidence 888 8999999998874433 466778888899987 888877764
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.54 E-value=3e-07 Score=64.48 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=51.5
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
.+..+|++++|+|+.++.+..+ ..+...+....++.|+++|+||+|+..+. ......+..+..+.
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~- 72 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI- 72 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC-
Confidence 4678999999999998876553 23333333322578999999999985432 12233344455554
Q ss_pred eEEEecCCCCCC
Q 028239 154 AYIECSSKTQQN 165 (211)
Q Consensus 154 ~~~~~sa~~~~~ 165 (211)
.++.+||.++.+
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 889999998753
No 352
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.54 E-value=7.8e-08 Score=72.96 Aligned_cols=164 Identities=17% Similarity=0.068 Sum_probs=87.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeE-EEEECCeEEEEEEEeCCCC----------cCccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSA-NVAVDGSIVNLGLWDTAGQ----------EDYSRLR 71 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~-~~~~~~~~~~l~l~D~~G~----------~~~~~~~ 71 (211)
.+.++++++|..++|||+|++.++..+....... +.+..... .+.++ -.+.+.|.||- ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999998763322222 22222221 12233 33558999991 1222334
Q ss_pred cccccCCc---EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239 72 PLSYRGAD---IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 72 ~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
..++.+-+ -+++.+|++-+-.-.+. ..++.+.+. +.|+.+|.||||...........-..++. ...+.+.+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~--~~f~~l~~ 284 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIK--INFQGLIR 284 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccce--eehhhccc
Confidence 44443322 34455565443221111 112334444 89999999999975432211000000000 00111111
Q ss_pred Hh--CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 149 QI--GAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 149 ~~--~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.. ...|.+.+|+.++.|+++|+-.+.+.
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhh
Confidence 11 11367789999999999887666543
No 353
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.53 E-value=9.5e-08 Score=70.75 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=80.7
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhhC--CCCcEEEEeeC
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RASYENVLKKWMPELRRFA--PNVPIVLVGTK 119 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK 119 (211)
..+.+.+.|.+|+...+..|.+.+.++..+++.+.++. ....++. ..++..+-.+. .+.++|+..||
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence 44677899999999888899998888887777665533 2233333 33333333332 58999999999
Q ss_pred CCcccCcccc------ccccCCccccHHHHHHHHHH----hCC-----ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 120 LDLREDRGYL------ADHVGSNVITTAQGEELRKQ----IGA-----AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 120 ~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.|+.++.... .++..-...+..-+++|.-+ .+. ..-..++|.+-+|+..+|..+-..+++..
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 9986654321 11111122233334444332 222 12356889999999999998888776544
No 354
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.6e-07 Score=77.76 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=78.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------eeeee-------EEEEECCeEEEEEEEeCCCCcCcc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------FDNFS-------ANVAVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~------~~~~~-------~~~~~~~~~~~l~l~D~~G~~~~~ 68 (211)
+..-+|+++.+.+-|||||...|+... +.....++. .++.. ..+..-.+.+.++++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 344589999999999999999997543 222222221 11111 223333356888899999999999
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 121 (211)
+......+-+|++++.+|+...-.-+.. ..+.+.+. .+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhh
Confidence 9999999999999999999776544443 22222222 2567799999999
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.53 E-value=4e-07 Score=64.87 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=36.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~D~~G 63 (211)
...+++++|.+++|||||++++.+... ..+.++.+...... +..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997553 22223333333222 22332 477999999
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.52 E-value=4.9e-07 Score=70.94 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=38.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
..++++++|.||+|||||+|+|.+... ....++++.. ...+..++ .+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998763 2223333222 22333333 35699999973
No 357
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.50 E-value=1.4e-06 Score=65.70 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=64.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc------c-ccccccccCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY------S-RLRPLSYRGA 78 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~------~-~~~~~~~~~~ 78 (211)
.+|.++|-|.+||||++..+.+.. ....|..|.-......+.+++ -++++.|.||--+- + ...-...+-|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 489999999999999999988765 455667777777777777777 45679999994221 1 1223356789
Q ss_pred cEEEEEEECCChhhHHHH
Q 028239 79 DIFVLAFSLISRASYENV 96 (211)
Q Consensus 79 d~~i~v~d~~~~~s~~~~ 96 (211)
+.+++|.|+..+-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998776554443
No 358
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.48 E-value=8e-07 Score=71.27 Aligned_cols=82 Identities=18% Similarity=0.074 Sum_probs=58.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~~ 69 (211)
+++.++|.|++|||||.+.+.+... ...|+.++.+.....+.+.+. ...+.+.|.||...-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 345666655555555555442 23567999999644221
Q ss_pred ----c---ccccccCCcEEEEEEECC
Q 028239 70 ----L---RPLSYRGADIFVLAFSLI 88 (211)
Q Consensus 70 ----~---~~~~~~~~d~~i~v~d~~ 88 (211)
. .-..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1 122468999999999974
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.46 E-value=4.6e-07 Score=72.09 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=38.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
..++++|+|-|++|||||||+|.+............+.-...+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 458899999999999999999999875222211122222333444443 569999995
No 360
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.44 E-value=1.1e-06 Score=63.65 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=58.9
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
...+.++|.+++|+|++++....+. .+... ..+.|+++|+||+|+..... + ....++.+...
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~----~~~k~~ilVlNK~Dl~~~~~----------~--~~~~~~~~~~~ 75 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKI----LGNKPRIIVLNKADLADPKK----------T--KKWLKYFESKG 75 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh--hhHhH----hcCCCEEEEEehhhcCChHH----------H--HHHHHHHHhcC
Confidence 4457899999999999876543322 12222 23679999999999854311 1 11112223333
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
. .++.+||+++.|++++.+.+...+
T Consensus 76 ~-~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 76 E-KVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHH
Confidence 3 689999999999999999998876
No 361
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.42 E-value=5.2e-07 Score=66.46 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
..+++++|.+|+|||||+|+|++..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999754
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.41 E-value=1.1e-06 Score=62.62 Aligned_cols=54 Identities=24% Similarity=0.243 Sum_probs=36.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G 63 (211)
...+++++|.+|+|||||+|++.+... .....+++.... .+..+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 457899999999999999999998652 222233332222 12222 2366999999
No 363
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.7e-05 Score=55.75 Aligned_cols=146 Identities=16% Similarity=0.223 Sum_probs=83.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---------------c-
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---------------S- 68 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------------~- 68 (211)
..+||.+-|+||+||||++.++.+.--... .+.+..+...+.-+++.+-|.+.|+...+.. .
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 468999999999999999988865322111 2334555566677788888888888731111 0
Q ss_pred ---c-------cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCcc
Q 028239 69 ---R-------LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNV 137 (211)
Q Consensus 69 ---~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 137 (211)
. .....++.+|.+| +|=--+-.+.. +.+.+.+.... ...|+|.+..+.+...
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr~P------------- 144 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVII--IDEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSRHP------------- 144 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccCCh-------------
Confidence 0 0122334567554 56444433333 45555565554 4778777776654311
Q ss_pred ccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 138 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
..+++ +..+. .++. .+.+|=+.+++.+...+-
T Consensus 145 ----~v~~i-k~~~~-v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 145 ----LVQRI-KKLGG-VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred ----HHHHh-hhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence 12222 33333 2333 444555588888877664
No 364
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.6e-07 Score=69.80 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=100.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ce--eeeeeEEEEE------------------------
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TV--FDNFSANVAV------------------------ 49 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~--t~--~~~~~~~~~~------------------------ 49 (211)
|+++-.++|.-+|+.--||||+++++.+-- |-.+... |. +.-..+.+.-
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 467778999999999999999999776421 1110000 00 0000011110
Q ss_pred --CC------eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhhCCCCcEEEEe
Q 028239 50 --DG------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----RASYENVLKKWMPELRRFAPNVPIVLVG 117 (211)
Q Consensus 50 --~~------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 117 (211)
.+ ....+.+.|+||++..-...-....-.|+.++.+..+. +++-+.+ .-.+ +.+ -..++++-
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL--aave-iM~---LkhiiilQ 186 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL--AAVE-IMK---LKHIIILQ 186 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH--HHHH-Hhh---hceEEEEe
Confidence 00 12456699999998765543333344577777666543 2333332 0111 111 24578888
Q ss_pred eCCCcccCccccccccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 118 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
||.|+..+.. -....++++.|.+...+ .|++.+||.-.+|++.+.+.+++++-.+.+..
T Consensus 187 NKiDli~e~~--------A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 187 NKIDLIKESQ--------ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred chhhhhhHHH--------HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 9999976542 00122344555554432 49999999999999999999999997765443
No 365
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.37 E-value=1.7e-06 Score=67.55 Aligned_cols=85 Identities=22% Similarity=0.178 Sum_probs=59.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC---------------CeEEEEEEEeCCCCcCc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVD---------------GSIVNLGLWDTAGQEDY 67 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~l~l~D~~G~~~~ 67 (211)
...+++.|+|.|++|||||.|.+..... +..++.++.+.....+.+. .....++++|++|...-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3578999999999999999999998763 4556655544443344332 25577899999995433
Q ss_pred cc----c---ccccccCCcEEEEEEECC
Q 028239 68 SR----L---RPLSYRGADIFVLAFSLI 88 (211)
Q Consensus 68 ~~----~---~~~~~~~~d~~i~v~d~~ 88 (211)
.+ + .-..++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 22 1 122468899999998863
No 366
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=3.4e-06 Score=68.34 Aligned_cols=84 Identities=23% Similarity=0.439 Sum_probs=57.3
Q ss_pred cCCc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH----HHHHHh
Q 028239 76 RGAD-IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE----ELRKQI 150 (211)
Q Consensus 76 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 150 (211)
...+ .+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.... ...+... .+++..
T Consensus 67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence 4445 889999988754 22333444434478999999999996532 2233333 334555
Q ss_pred CC--ceEEEecCCCCCCHHHHHHHHHHH
Q 028239 151 GA--AAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 151 ~~--~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+. ..++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 54 257899999999999999999765
No 367
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.35 E-value=5.7e-07 Score=63.89 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------C-CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPT------D-YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~------~-~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 68 (211)
.++++|++|||||||+|.|+...... . ..+...+.....+..++.. .++||||-..+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 68999999999999999999874211 1 1111122223344453332 389999975543
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.32 E-value=3.8e-06 Score=65.57 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=60.2
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
...+..+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+.. ........+ +..+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~-----------~~~~~~~~~-~~~~ 77 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPA-----------VTKQWLKYF-EEKG 77 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHH-----------HHHHHHHHH-HHcC
Confidence 446789999999999987755443 1222222 268999999999985421 111111122 2334
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
. +++.+||+++.|++++.+.+.+.+.
T Consensus 78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 78 I-KALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 3 7899999999999999999888764
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.27 E-value=1.2e-05 Score=60.79 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=50.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC--CCCCC--CCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCcccc------ccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN--KFPTD--YIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYSRL------RPL 73 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~--~~~~~--~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~------~~~ 73 (211)
...-|.|+|++++|||+|+|.+++. .|.-. ..+++.........+. +....+.++||+|....... .-.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3457899999999999999999998 54322 2222222221222221 22356779999996543321 111
Q ss_pred cccC--CcEEEEEEECCCh
Q 028239 74 SYRG--ADIFVLAFSLISR 90 (211)
Q Consensus 74 ~~~~--~d~~i~v~d~~~~ 90 (211)
.+.. ++.+|+..+....
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 2223 7777777665543
No 370
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.25 E-value=4.7e-06 Score=76.89 Aligned_cols=111 Identities=26% Similarity=0.234 Sum_probs=64.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC----CCc--eeeeeeEEEEECCeEEEEEEEeCCCCcC--------cccccccc
Q 028239 9 CVTVGDGAVGKTCMLICYTSNKFPTDY----IPT--VFDNFSANVAVDGSIVNLGLWDTAGQED--------YSRLRPLS 74 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~ 74 (211)
.+|+|++|+||||++..- +-.++-.. ..+ .+....-..++.+.-+ ++|++|..- ....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEE---EEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999866 33332211 001 1111122333444433 899999321 22234443
Q ss_pred c---------cCCcEEEEEEECCCh-----hhH----HHHHHHHHHHHhhhC-CCCcEEEEeeCCCccc
Q 028239 75 Y---------RGADIFVLAFSLISR-----ASY----ENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124 (211)
Q Consensus 75 ~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 124 (211)
+ +..+++|+++|+.+- +.. ..+ ...+.++.+.. ...||.|++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 3 458999999997543 211 122 33334444333 6899999999999763
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.23 E-value=2e-06 Score=68.99 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~ 30 (211)
++++|.+|+|||||+|+|++..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999764
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.19 E-value=8.7e-06 Score=63.92 Aligned_cols=88 Identities=22% Similarity=0.202 Sum_probs=60.0
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
...+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.. ..... .++.+..+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~-----------~~~~~-~~~~~~~~ 80 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE-----------VTKKW-IEYFEEQG 80 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH-----------HHHHH-HHHHHHcC
Confidence 446789999999999988765443 2222222 268999999999985421 11111 22223334
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
. +++.+||+++.|++++.+.+.+.+.
T Consensus 81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 81 I-KALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 3 7899999999999999998887763
No 373
>PRK01889 GTPase RsgA; Reviewed
Probab=98.19 E-value=1.1e-05 Score=65.25 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=58.1
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-HhCCc
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-QIGAA 153 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (211)
..++|.+++|+++...-+...+ .+++...... +++.++|+||+||.+.. .+....+.. ..+ .
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g-~ 172 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPG-V 172 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCC-C
Confidence 5789999999999644444444 6666665554 78889999999997531 111122222 234 3
Q ss_pred eEEEecCCCCCCHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAI 174 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~ 174 (211)
+++.+|++++.|++++..++.
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 889999999999999988874
No 374
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.4e-05 Score=66.55 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=72.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
.++=|+|+||||+|||||++.|+..--... ..+.......+.++...+.+.+||. ....+.. ...-+|.+++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeEEE
Confidence 456788999999999999998876531111 1111111223556777888999993 2333322 35568999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCc
Q 028239 85 FSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDR 126 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 126 (211)
+|..-.-..+.. .+++.+... ..| ++-|+|+.|+....
T Consensus 141 IdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 141 IDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred eccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence 998776656654 444554443 444 56788999997654
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.19 E-value=7.8e-06 Score=58.42 Aligned_cols=64 Identities=11% Similarity=-0.030 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCcCcccccc--------ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 54 VNLGLWDTAGQEDYSRLRP--------LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
....++|+||-........ ...-..+.+++++|+.+......-...+..++... . ++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a----d-~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA----D-RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC----C-EEEEecccC
Confidence 4556899999643222111 12335789999999765443221113444555433 2 668999996
No 376
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.17 E-value=7.8e-06 Score=61.82 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA----------SYENVLKKWMPELRRF-APNVPIVLVGTKLDL 122 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl 122 (211)
+.|..+|.+|+..-+..|...+.++.++|+|...+... .+++.+..+....... ...+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 66889999999999999999999999999998865421 1222211111111111 146889999999997
Q ss_pred cc
Q 028239 123 RE 124 (211)
Q Consensus 123 ~~ 124 (211)
..
T Consensus 282 la 283 (379)
T KOG0099|consen 282 LA 283 (379)
T ss_pred HH
Confidence 54
No 377
>PRK12289 GTPase RsgA; Reviewed
Probab=98.11 E-value=6.3e-06 Score=66.25 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||+|+|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999754
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.07 E-value=6.6e-05 Score=59.68 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCCcCcccc--------c----cccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239 53 IVNLGLWDTAGQEDYSRL--------R----PLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTK 119 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~--------~----~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 119 (211)
.+.+.|+||||....... . ...-...+..++|.|++... .+..+ .. +... -.+--+|.||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~----f~~~--~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KA----FHEA--VGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HH----HHhh--CCCCEEEEEC
Confidence 366779999996443221 0 00113467889999998643 23332 22 2211 1234788999
Q ss_pred CCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf 170 (211)
.|.... ...+..++...+. |+..++ +|++++++-
T Consensus 269 lD~t~~--------------~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 269 LDGTAK--------------GGVVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 996543 2334555666676 888887 688887764
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.06 E-value=8.2e-06 Score=65.11 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred EEEEEEeCCCCcCccc-cc---ccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239 54 VNLGLWDTAGQEDYSR-LR---PLS--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 127 (211)
+.+.|+||+|...... .. ... ....|..++|.|+.......+. ...+... -..--+|+||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCc-
Confidence 4577999999754322 11 111 2357888999998765432222 1222221 12246789999986542
Q ss_pred ccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf 170 (211)
.-+..++...+. |+..++ +|++++++.
T Consensus 296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLI 322 (336)
T ss_pred -------------cHHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence 223344445566 777776 688887765
No 380
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.3e-05 Score=67.09 Aligned_cols=113 Identities=18% Similarity=0.116 Sum_probs=75.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-----CCC-CCCCce----------eeee-eEEEEECCeEEEEEEEeCCCCcCccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-----FPT-DYIPTV----------FDNF-SANVAVDGSIVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-----~~~-~~~~t~----------~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~ 69 (211)
-+|.+.-+-.+||||+-++.+-.. +.+ ....+. +... +.-....-..+.++++|||||-+|.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 367788888999999998876422 111 000111 0001 00011112357888999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
..+..++--|++++|++....-.-+.. ..|.+ ..++ ++|.|..+||.|..
T Consensus 120 EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 120 EVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRM 169 (721)
T ss_pred EehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhc
Confidence 899999999999999998776555554 45543 3444 89999999999953
No 381
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=6.3e-06 Score=64.69 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-.++++|++|+|||||+|.|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999999865
No 382
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.05 E-value=5.6e-06 Score=67.99 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=41.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
.+.|.+||.||+||||+||.|.+.+-+........+..-+++.+... +.+.||||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence 58999999999999999999999985444333333444455555532 4599999963
No 383
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.05 E-value=9.7e-06 Score=62.96 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC------CCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK------FPTDY-IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~------~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 68 (211)
..+++|++|+|||||+|+|.... +.... .+...+....-+..++..+ |+||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 56899999999999999998743 11111 1111233333445532222 89999976644
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.02 E-value=1.4e-05 Score=61.27 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|.+|+|||||+|+|.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68899999999999999999754
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.00 E-value=3e-05 Score=60.33 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCcCcccccc------------ccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239 54 VNLGLWDTAGQEDYSRLRP------------LSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKL 120 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~------------~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 120 (211)
+.+.|+||||....+...- ..-..+|..++|.|++... .+..+ ..+.+.. .+--+|.||.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-----~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-----KVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-----HHHHhhC--CCCEEEEEcc
Confidence 6677999999754332210 1122488999999997542 23322 2222221 2347889999
Q ss_pred CcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf 170 (211)
|....- ..+..+....+. |+..++ +|++++++-
T Consensus 228 De~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 986532 334455556666 777777 677777664
No 386
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=4.3e-06 Score=67.12 Aligned_cols=114 Identities=18% Similarity=0.052 Sum_probs=80.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--------CCCCCCCce--------e-eeeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--------FPTDYIPTV--------F-DNFSANVAVDGSIVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--------~~~~~~~t~--------~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 69 (211)
-+|.++....+||||.-.|++--. ..+...-|. + +..+.-+..+=+.+.++++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 478899999999999999886311 111111111 1 11122233333446777999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..+..++-.|+++.|||.+-.-.-+.+ ..|.+.= + .++|-+..+||+|...
T Consensus 118 everclrvldgavav~dasagve~qtl-tvwrqad-k--~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQAD-K--FKIPAHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCccccee-eeehhcc-c--cCCchhhhhhhhhhhh
Confidence 999999999999999999887777776 6675432 2 3799999999999754
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.98 E-value=6.3e-05 Score=61.80 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=39.3
Q ss_pred EEEEEEEeCCCCcCcccc-c---cc--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 53 IVNLGLWDTAGQEDYSRL-R---PL--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~-~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
.+.+.|+||||....+.. . .. ...+.+.+++|.|++......+. ...+.+. -.+--+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCC
Confidence 467789999996443311 1 11 12357889999998765433322 1333322 235578899999754
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=97.96 E-value=1.4e-05 Score=64.76 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=34.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-------PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
.++.++|.+|+|||||+|+|+.... ....++|+... ..+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999986431 12233333222 22233332 2499999963
No 389
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.95 E-value=1.5e-05 Score=64.54 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=35.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-------PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
.++.++|.+|+|||||+|++++... ...+++|+.... .+..++. +.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCC
Confidence 4799999999999999999997532 223333332221 2333222 4599999954
No 390
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.94 E-value=1.7e-05 Score=59.04 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=66.9
Q ss_pred EEEEEEeCCCCcCccccc----c--ccccCCcEEEEEEEC------CChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCC
Q 028239 54 VNLGLWDTAGQEDYSRLR----P--LSYRGADIFVLAFSL------ISRASYENVLKKWMPELRRFA-PNVPIVLVGTKL 120 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 120 (211)
....++|+|||-++-..+ . ..++..+.=+.++++ +++..|-.. ++..+.... -..|=|=|..|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence 445599999985543211 1 123445544444443 556666553 112222222 367778889999
Q ss_pred CcccCcccccc----------------------ccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 121 DLREDRGYLAD----------------------HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 121 Dl~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
|+...-..... ...+..-..+.+-.+.+.++.+.|...+-.+.+++-.+...|-++
T Consensus 174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkA 251 (290)
T KOG1533|consen 174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKA 251 (290)
T ss_pred HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhc
Confidence 97554331100 011111223445566777788788888888888888887776654
No 391
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.93 E-value=8.8e-05 Score=61.76 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=48.5
Q ss_pred EEEEeCCCCc-------------CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 56 LGLWDTAGQE-------------DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 56 l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
..+.|.||.- ..-++...+..+.+++|+|+--..-+.-......+...+... +...|+|.+|.|+
T Consensus 414 MVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 414 MVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVDL 491 (980)
T ss_pred eEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecch
Confidence 4589999931 111234457789999999986433332222113333333322 7788999999999
Q ss_pred ccCccccccccCCccccHHHHHHHHH
Q 028239 123 REDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.+.+. .++..++++..
T Consensus 492 AEknl----------A~PdRI~kIle 507 (980)
T KOG0447|consen 492 AEKNV----------ASPSRIQQIIE 507 (980)
T ss_pred hhhcc----------CCHHHHHHHHh
Confidence 87643 55555555543
No 392
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=7.4e-05 Score=57.17 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=44.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-----eEEEEECCeEEEEEEEeCCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----SANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~l~l~D~~G 63 (211)
..++|+-+|..|.|||||++.|++..+.....+.....+ .+...-.+..+.+.+.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 468999999999999999999999987655433332222 22233357889999999998
No 393
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=6.1e-05 Score=43.45 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCcEEEEEEECCC--hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239 77 GADIFVLAFSLIS--RASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121 (211)
Q Consensus 77 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 121 (211)
-.++++|++|++. +-+.++. ..+++.++...++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 4689999999964 4667777 678888888889999999999998
No 394
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.5e-05 Score=64.30 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=76.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CC----C--CCCCceeeeeeEEEEE-----------------------CCeEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FP----T--DYIPTVFDNFSANVAV-----------------------DGSIVN 55 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~----~--~~~~t~~~~~~~~~~~-----------------------~~~~~~ 55 (211)
-++-++.+..-|||||-..|.... +. . .+..|-.++....+++ ++..+.
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 367889999999999999998643 11 1 1122222222221111 235688
Q ss_pred EEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
++++|.||+-+|.+.....++-.|+.++|+|--+.--.+.- ..+.+.+.+. +.-++++||.|..
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence 89999999999999999999999999999998776555543 3444445443 3336779999953
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.89 E-value=0.00019 Score=55.87 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=66.7
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
+..-...+.|-.++|+.+.+|+--..+..+++-..... ++.-++++||.||.+... ...++.......
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~ 139 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREYED 139 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHHHh
Confidence 33334556888888889888864444336665554444 787888899999987643 221345556666
Q ss_pred hCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 150 IGAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
.+. +.+.+|++++.+++++...+...+
T Consensus 140 ~gy-~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 140 IGY-PVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred CCe-eEEEecCcCcccHHHHHHHhcCCe
Confidence 776 899999999999999987776543
No 396
>PRK00098 GTPase RsgA; Reviewed
Probab=97.88 E-value=2.3e-05 Score=61.84 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||+|.|++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998764
No 397
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.84 E-value=0.0021 Score=45.99 Aligned_cols=143 Identities=8% Similarity=0.037 Sum_probs=95.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|+......|+++|..+.++..|..++....- . +.+++.-...-..- ......=...|.
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~-------------------~~l~Vh~a~sLPLp-~e~~~lRprIDl 67 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E-------------------FKLKVHLAKSLPLP-SENNNLRPRIDL 67 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c-------------------eeEEEEEeccCCCc-ccccCCCceeEE
Confidence 3455678999999999999999999986321 0 11222222211100 001111234799
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|++|....-|++.+ +.-+..+.....-=.+.++.+.....+... +...++.+++..++. |++.+.-
T Consensus 68 IVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~l 135 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADL 135 (176)
T ss_pred EEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeec
Confidence 9999999999999998 555455544433334566666665544333 888999999999998 9999988
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028239 161 KTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~ 177 (211)
.+.++...+-+.|.+.+
T Consensus 136 e~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 136 ENEEGRTSLAQRLLRML 152 (176)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 88877777766666655
No 398
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7e-05 Score=60.05 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=92.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC-----------------------CCCCCCCceeeeee--EEE-----EECCe
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-----------------------FPTDYIPTVFDNFS--ANV-----AVDGS 52 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-----------------------~~~~~~~t~~~~~~--~~~-----~~~~~ 52 (211)
+..+++++++|...+||||+-..++... +...+..|..+.-. +++ ...-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3568899999999999999987664211 01111111111100 111 11112
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---HHHHH-HHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---YENVL-KKWMPELRRFAPNVPIVLVGTKLDLREDRGY 128 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 128 (211)
.-.+.+.|.||+..|-...-.-..+||.-++|.++.-.+- |+.-. .+=...+.....-...|+++||+|-+.-+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn-- 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN-- 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC--
Confidence 2456699999998887766666788999999998743221 11100 01112233333355678999999976432
Q ss_pred cccccCCccccHHHHHHHHHHhCC-----ceEEEecCCCCCCHHHHHH
Q 028239 129 LADHVGSNVITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 171 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~lf~ 171 (211)
+...+..+ ..+....+.+..+. ..|+++|..+|.++.+...
T Consensus 234 -Ws~eRy~E-~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 -WSNERYEE-CKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred -cchhhHHH-HHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11111111 11222334443332 4689999999999887653
No 399
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.78 E-value=0.00023 Score=51.38 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~ 61 (211)
+|++-|++|+|||||+++++..--... -.....+...+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEEC
Confidence 689999999999999998875421110 0112233333344555666666666
No 400
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.76 E-value=0.00012 Score=53.37 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCcCcccc--cccc---ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 54 VNLGLWDTAGQEDYSRL--RPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
....++++.|....... .... .-..+.++.|+|+.+..........+..++.... ++++||+|+...
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~ 156 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSD 156 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCCh
Confidence 34557788885443333 0000 1246889999999776444444345555555432 788999998765
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00027 Score=57.25 Aligned_cols=138 Identities=15% Similarity=0.053 Sum_probs=70.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCce-eeee---------------e-EEEEEC-----------CeEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTV-FDNF---------------S-ANVAVD-----------GSIVN 55 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~t~-~~~~---------------~-~~~~~~-----------~~~~~ 55 (211)
--++++|++|+||||++..|..... ........ .+.+ . ...... -....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 4688999999999999988864321 00000000 0000 0 000010 02356
Q ss_pred EEEEeCCCCcCccccc----cc--cccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCC--CcEEEEeeCCCcccCc
Q 028239 56 LGLWDTAGQEDYSRLR----PL--SYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPN--VPIVLVGTKLDLREDR 126 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~ 126 (211)
+.++||+|....+... .. ......-.++|++++.. +...++...+......-... .+-=+|.||.|....
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 6799999966443221 11 12234456888898764 45555433333222110000 123577899997653
Q ss_pred cccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
.-.+..+....+. |+..++
T Consensus 297 -------------~G~~l~~~~~~~l-Pi~yvt 315 (374)
T PRK14722 297 -------------LGGVLDTVIRYKL-PVHYVS 315 (374)
T ss_pred -------------ccHHHHHHHHHCc-CeEEEe
Confidence 2345556666666 544443
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.76 E-value=0.00021 Score=50.42 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 121 (211)
.+.+.|+|++|... ....++..+|.+++|...+-.+.+.-+ ++ ..+. .-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI--KA-GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh--hh-hHhh-----hcCEEEEeCCC
Confidence 46777999999542 223478899999999887743433332 11 2222 22378899987
No 403
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00093 Score=50.54 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=98.6
Q ss_pred eEEEEECCCCC--CHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEE--EEEEeCCCCcCccccccccccCCcEEE
Q 028239 7 IKCVTVGDGAV--GKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVN--LGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 7 ~~I~viG~~~~--GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.-++|+|..|+ ||.+|+.+|....|.....+.....+. -.+++++-|. +.+.=.+--+.+.--.........+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 45789999998 999999999888776655444433332 1122222111 111111111111111122344567999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc--------------ccc-----------c-------
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR--------------GYL-----------A------- 130 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~-----------~------- 130 (211)
+|||++....+..+ +.|+.--....-++ .+.+|||.|...+. .+. .
T Consensus 84 mvfdlse~s~l~al-qdwl~htdinsfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDAL-QDWLPHTDINSFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHH-Hhhccccccccchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 99999998888887 88865322221122 35678999954320 000 0
Q ss_pred --cccCCccccHHHHHHHHHHhCCceEEEecCCCC------------CCHHHHHHHHHHHHcCC
Q 028239 131 --DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ------------QNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~------------~~v~~lf~~l~~~~~~~ 180 (211)
-...........+.+|+.+.+. .|++.+|.+. .||+.+|..+...+-..
T Consensus 162 llgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 0011111333456788888888 9999998542 48999999888776543
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=0.0012 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 405
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.72 E-value=0.001 Score=52.97 Aligned_cols=99 Identities=16% Similarity=0.040 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCcCccccccc-----c---ccCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPL-----S---YRGADIFVLAFSLISRASYEN-VLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
....++++.|-..-...... . .-..|+++-|+|+........ ......+++.-. =++++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCC
Confidence 33447888885433211111 1 224688999999876544332 223444444322 278899999987
Q ss_pred CccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHH
Q 028239 125 DRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf 170 (211)
.. ..+..+...++++. .+++.++.. +....+++
T Consensus 160 ~~------------~l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 160 AE------------ELEALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred HH------------HHHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 53 23344555555553 577877773 44444444
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00027 Score=58.08 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=54.5
Q ss_pred EEEEEEeCCCCcCcccc----cccc--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 54 VNLGLWDTAGQEDYSRL----RPLS--YRGADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
..+.++||+|....... ...+ .....-.++|+|++. .....++ ...+.. --+-=+|+||.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~----~~~f~~---~~~~~~I~TKlDEt~~- 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV----ISAYQG---HGIHGCIITKVDEAAS- 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH----HHHhcC---CCCCEEEEEeeeCCCC-
Confidence 45669999996543221 1111 123456778889874 4444443 222221 2233578999997653
Q ss_pred cccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH-HHHH----HHHHHHHcC
Q 028239 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV-KAVF----DTAIKVVLQ 179 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v-~~lf----~~l~~~~~~ 179 (211)
.-.+..+....+. |+..++. |.+| +++. +.|++.++.
T Consensus 342 -------------~G~~l~~~~~~~l-Pi~yvt~--Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 342 -------------LGIALDAVIRRKL-VLHYVTN--GQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred -------------ccHHHHHHHHhCC-CEEEEEC--CCCchhhhhhCCHHHHHHHHhc
Confidence 2445566667776 5554443 4555 3332 345555554
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.69 E-value=0.00056 Score=55.39 Aligned_cols=65 Identities=26% Similarity=0.289 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCCcCccccc----ccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCCccc
Q 028239 53 IVNLGLWDTAGQEDYSRLR----PLSYR--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLRE 124 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~ 124 (211)
.+.+.++||.|...++... ..++. ...-..+|++++... .++ ...++.+.. .|+ -+++||.|...
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl-kei~~~f~~----~~i~~~I~TKlDET~ 352 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL-KEIIKQFSL----FPIDGLIFTKLDETT 352 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH-HHHHHHhcc----CCcceeEEEcccccC
Confidence 3667799999987766422 12222 234556677776532 233 333333332 333 57789999754
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0003 Score=59.16 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCCcCcccccc------ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 53 IVNLGLWDTAGQEDYSRLRP------LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
.+.+.|+||+|....+.... .... ....++|++.+. +..++ ...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl-~eii~~f~~---~~~~gvILTKlDEt~-- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDL-DEVVRRFAH---AKPQGVVLTKLDETG-- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHH-HHHHHHHHh---hCCeEEEEecCcCcc--
Confidence 36778999999644332100 0011 224566777654 23333 233333333 246679999999744
Q ss_pred cccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
....+..+....+. |+..++. |..|
T Consensus 499 ------------~lG~aLsv~~~~~L-PI~yvt~--GQ~V 523 (559)
T PRK12727 499 ------------RFGSALSVVVDHQM-PITWVTD--GQRV 523 (559)
T ss_pred ------------chhHHHHHHHHhCC-CEEEEeC--CCCc
Confidence 23555666667676 5555543 4444
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.61 E-value=0.0011 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
=.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3567899999999999999854
No 410
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.60 E-value=2.9e-05 Score=62.07 Aligned_cols=59 Identities=20% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G 63 (211)
+..++|.|.++|.|++||||+||+|...+.-...+-..++.+..-+..-...+ ++||||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIf---LIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIF---LIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhcee---EecCCC
No 411
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00014 Score=66.26 Aligned_cols=113 Identities=21% Similarity=0.105 Sum_probs=60.5
Q ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCCCCce--eee-eeEEEEECCeEEEEEEEeCCCCcC--------cccccccc--
Q 028239 9 CVTVGDGAVGKTCMLICYTS-NKFPTDYIPTV--FDN-FSANVAVDGSIVNLGLWDTAGQED--------YSRLRPLS-- 74 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~-~~~~~~~~~t~--~~~-~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~-- 74 (211)
-+|||++|+||||++..--. -++.....-.. ... ..-.....+. -.++||+|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 37999999999999953211 11211111111 110 1111233333 33899999321 12244433
Q ss_pred -------ccCCcEEEEEEECCChh-----hHHHHHHHHH---HHHhhhC-CCCcEEEEeeCCCccc
Q 028239 75 -------YRGADIFVLAFSLISRA-----SYENVLKKWM---PELRRFA-PNVPIVLVGTKLDLRE 124 (211)
Q Consensus 75 -------~~~~d~~i~v~d~~~~~-----s~~~~~~~~~---~~~~~~~-~~~p~ivv~nK~Dl~~ 124 (211)
.+..+++|+..|+.+-- .-......+. .++.+.. -..||.|++||.|+..
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 45689999999974421 1111112222 3333333 5899999999999865
No 412
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.57 E-value=8.1e-05 Score=59.56 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=37.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
.+.+++.|+|-|++||||+||+|..... +....+. .+..-+.+..+ -.+.|.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pG-vT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPG-VTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCcc-chhhhhheecc---CCceeccCCce
Confidence 4679999999999999999999998774 2221111 11111223333 23569999994
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00086 Score=58.89 Aligned_cols=105 Identities=18% Similarity=0.062 Sum_probs=55.8
Q ss_pred EEEEEEeCCCCcCcccc----ccc--cccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 54 VNLGLWDTAGQEDYSRL----RPL--SYRGADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
+.+.|+||+|....+.. ... -....+-.++|.|++. .+.+.++ .+.+.....-.+-=+|+||.|....
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i----~~~f~~~~~~~i~glIlTKLDEt~~- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV----VHAYRHGAGEDVDGCIITKLDEATH- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH----HHHHhhcccCCCCEEEEeccCCCCC-
Confidence 45779999994332211 111 1234566788999875 3444444 2333321111233577999997653
Q ss_pred cccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH-HHHH----HHHHHHHcC
Q 028239 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV-KAVF----DTAIKVVLQ 179 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v-~~lf----~~l~~~~~~ 179 (211)
.-.+..+....+. |+..++. |.+| +++. +.+++.++.
T Consensus 339 -------------~G~iL~i~~~~~l-PI~yit~--GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 339 -------------LGPALDTVIRHRL-PVHYVST--GQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred -------------ccHHHHHHHHHCC-CeEEEec--CCCChhhcccCCHHHHHHHHhc
Confidence 2344556666666 6555543 5555 3333 445555554
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.53 E-value=0.0002 Score=59.28 Aligned_cols=64 Identities=19% Similarity=0.095 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCcCccccc----c--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239 54 VNLGLWDTAGQEDYSRLR----P--LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE 124 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 124 (211)
+.+.|+||||........ . .....+|.+++|+|++... +. ......+.. ..+ .-+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~~---~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFHE---AVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHHh---cCCCCEEEEecccCCC
Confidence 367799999965433210 0 1134688999999987653 22 112223332 233 357789999754
No 415
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.49 E-value=0.00036 Score=50.57 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=30.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 79 DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
|++++|+|+.++.+..+ ..+.+.+.....+.|+|+|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 78999999988754332 2333332111236899999999999653
No 416
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.00098 Score=49.99 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=32.3
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
..+.+|.+|+|.|.+- .++..+ ++..++-++. .-.++.+|.||.|..
T Consensus 152 ~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence 4678999999999654 345555 4444444443 137899999999954
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.44 E-value=0.00066 Score=47.34 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=59.3
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh
Q 028239 11 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR 90 (211)
Q Consensus 11 viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (211)
.-|.+|+|||++.-.+...--... ..+..... ........+.+.++|+|+.. .......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~--D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDA--DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEC--CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-h
Confidence 456789999999755432110000 00000000 00000111667799999853 233345688999999999865 3
Q ss_pred hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 91 ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
.++... ...++.+.+.....++.+|.|+.+..
T Consensus 79 ~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 445544 34445554444466788999999743
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.41 E-value=0.00036 Score=54.31 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=35.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-------CCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
..++.++|+|-||+|||||+|.+....... ..++.+. .+...+.+..... +.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~-~V~~~iri~~rp~-vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTR-RVSERIRISHRPP-VYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCcee-eehhheEeccCCc-eEEecCCCc
Confidence 457899999999999999999876533211 1111111 1122233433222 569999994
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=97.40 E-value=0.00014 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
||+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00014 Score=52.90 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.||+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=97.39 E-value=0.0011 Score=54.90 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=47.0
Q ss_pred EEEEEEeCCCCcCcccc-c---cc--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239 54 VNLGLWDTAGQEDYSRL-R---PL--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~-~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 127 (211)
+.+.|+||||....+.. . .. ..-..+.+++|.|........ .....+.+.. + ..-+|.||.|.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av----~~a~~F~~~~-~-i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAV----NTAKAFNEAL-G-LTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHH----HHHHHHHhhC-C-CCEEEEeCccCcccc-
Confidence 66779999995433211 0 00 112567789999986543222 2223333321 1 235677999964432
Q ss_pred ccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
-.+.......+. |+..++.
T Consensus 257 -------------G~alsi~~~~~~-PI~fig~ 275 (433)
T PRK10867 257 -------------GAALSIRAVTGK-PIKFIGT 275 (433)
T ss_pred -------------cHHHHHHHHHCc-CEEEEeC
Confidence 235556666666 6655544
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0019 Score=52.78 Aligned_cols=107 Identities=21% Similarity=0.101 Sum_probs=57.4
Q ss_pred EEEEEEEeCCCCcCcccc----cccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 53 IVNLGLWDTAGQEDYSRL----RPLSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~----~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.+.+.++||+|....+.. ...++. ...-.++|.|++... .++ . +.+..+..-.+-=+|+||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~-~---~~~~~~~~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDV-K---EIFHQFSPFSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHH-H---HHHHHhcCCCCCEEEEEeccCCCc
Confidence 366779999996543311 111222 123578999987752 222 2 223333222244678999997553
Q ss_pred ccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH-HHHH----HHHHHHHcCCch
Q 028239 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV-KAVF----DTAIKVVLQPPR 182 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v-~~lf----~~l~~~~~~~~~ 182 (211)
.--+..++...+. |+..++. |.+| +++. ..+++.++....
T Consensus 328 --------------~G~~l~~~~~~~~-Pi~yit~--Gq~vPeDl~~~~~~~~~~~l~g~~~ 372 (388)
T PRK12723 328 --------------VGNLISLIYEMRK-EVSYVTD--GQIVPHNISIAEPLTFIKKINGYRI 372 (388)
T ss_pred --------------chHHHHHHHHHCC-CEEEEeC--CCCChhhhhhCCHHHHHHHhcCCCc
Confidence 2345556666666 5544443 5555 3333 445565554433
No 423
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.37 E-value=0.00031 Score=51.74 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=45.1
Q ss_pred CCcEEEEeeCCCcccCcccc-------------ccccCCcccc------HHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239 110 NVPIVLVGTKLDLREDRGYL-------------ADHVGSNVIT------TAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 110 ~~p~ivv~nK~Dl~~~~~~~-------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf 170 (211)
.+|-|=|.+|.||.....+. ........-+ ...+.++...++.+.|+.....+.++++.++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 78889999999987652210 0001111111 1223455667788899999999999999998
Q ss_pred HHHHHHHc
Q 028239 171 DTAIKVVL 178 (211)
Q Consensus 171 ~~l~~~~~ 178 (211)
..|-.++.
T Consensus 244 ~~ID~aiQ 251 (273)
T KOG1534|consen 244 SYIDDAIQ 251 (273)
T ss_pred HHHHHHHH
Confidence 88776663
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0016 Score=54.49 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++++|+.|+||||++..|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999987764
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.35 E-value=0.00017 Score=48.84 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.31 E-value=0.00021 Score=51.74 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
||+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.28 E-value=0.0013 Score=54.49 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=48.9
Q ss_pred EEEEEEeCCCCcCcccc-cc---c--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239 54 VNLGLWDTAGQEDYSRL-RP---L--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 127 (211)
+.+.|+||||....+.. .. . ..-..+.+++|+|+.... +. ..+...+.... + ..=+|.||.|.....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~-~~~a~~f~~~v-~-i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DA-VNTAKTFNERL-G-LTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HH-HHHHHHHHhhC-C-CCEEEEeCccCcccc-
Confidence 56779999996443221 10 0 123578889999987543 32 23334443322 2 235679999964432
Q ss_pred ccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
..+..++...+. |+..+..
T Consensus 256 -------------G~~lsi~~~~~~-PI~fi~~ 274 (428)
T TIGR00959 256 -------------GAALSVRSVTGK-PIKFIGV 274 (428)
T ss_pred -------------cHHHHHHHHHCc-CEEEEeC
Confidence 235666677776 6665544
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.27 E-value=0.00021 Score=49.79 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
No 429
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.26 E-value=0.00035 Score=52.16 Aligned_cols=29 Identities=24% Similarity=0.098 Sum_probs=25.6
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
|-+.+..-|+|+|++|+|||||++.+.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 66777888999999999999999999764
No 430
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.24 E-value=0.0014 Score=45.20 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKF 31 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~ 31 (211)
.--+++.|++|+|||+|++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999887653
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.23 E-value=0.00039 Score=41.11 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-.+|.|+.|+|||||++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999987754
No 432
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.21 E-value=0.00043 Score=50.02 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=25.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
|+.....-+.|+|++|+|||||+.++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 66667778999999999999999998765
No 433
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.21 E-value=0.00042 Score=51.77 Aligned_cols=29 Identities=24% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
|...+...|+|.|++|||||||.+.|...
T Consensus 1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33456899999999999999999988764
No 434
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00033 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++||+|||||||++++.+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999997654
No 435
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.17 E-value=0.00023 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 436
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.15 E-value=0.0051 Score=51.00 Aligned_cols=89 Identities=19% Similarity=0.121 Sum_probs=49.3
Q ss_pred EEEEEEeCCCCcCccc----ccccccc---CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 54 VNLGLWDTAGQEDYSR----LRPLSYR---GADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~----~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+.+.|+||||....+. ....++. ...-.++|++++-. ..+.++ ...+... + +--++.||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~----~~~f~~~--~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI----YKHFSRL--P-LDGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH----HHHhCCC--C-CCEEEEeccccccc
Confidence 5677999999754431 1111222 33466778887543 334433 2333321 1 23688999997542
Q ss_pred ccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
...+..+....+. |+..++. |.+|
T Consensus 373 --------------~G~i~~~~~~~~l-Pv~yit~--Gq~V 396 (424)
T PRK05703 373 --------------LGSILSLLIESGL-PISYLTN--GQRV 396 (424)
T ss_pred --------------ccHHHHHHHHHCC-CEEEEeC--CCCC
Confidence 2346667777777 5555443 4444
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.15 E-value=0.00047 Score=41.93 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988765
No 438
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.09 E-value=0.0041 Score=39.80 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=43.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-ccccccCCcEEEEEEEC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-RPLSYRGADIFVLAFSL 87 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~ 87 (211)
+++.|.+|+|||++...+...--...+ +...++ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999776543211110 112222 4569999986543321 13456678999999886
Q ss_pred CCh
Q 028239 88 ISR 90 (211)
Q Consensus 88 ~~~ 90 (211)
+..
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 544
No 439
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.06 E-value=0.00065 Score=51.51 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|.-...++|+|+|+|||||||+...|..
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4445668999999999999999998865
No 440
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.05 E-value=0.011 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999999864
No 441
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.00055 Score=46.81 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~ 30 (211)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 7899999999999999887653
No 442
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.03 E-value=0.0028 Score=41.63 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=46.9
Q ss_pred EEEEC-CCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 9 CVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 9 I~viG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
|++.| ..|+||||+...+...--... .++.. +.. +..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~------~d~-d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL------IDL-DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE------EeC-CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56777 569999999865543211000 01110 001 111567799999864322 22567789999999885
Q ss_pred CChhhHHHHHHHHHH
Q 028239 88 ISRASYENVLKKWMP 102 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (211)
+ ..++..+ ..+.+
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 4456555 45544
No 443
>PRK14530 adenylate kinase; Provisional
Probab=97.03 E-value=0.0007 Score=50.87 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.0008 Score=49.40 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.=|+|+|++|+|||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998753
No 445
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.00 E-value=0.00069 Score=51.48 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999888754
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.00 E-value=0.00062 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-|+|+|++|||||||++.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999988553
No 447
>PRK06217 hypothetical protein; Validated
Probab=96.99 E-value=0.00068 Score=49.58 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988754
No 448
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.0011 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+..-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4556889999999999999999754
No 449
>PRK14527 adenylate kinase; Provisional
Probab=96.97 E-value=0.00089 Score=49.32 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|+.++..-|+++|+||+||||+...+..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5556677899999999999999998864
No 450
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.96 E-value=0.0058 Score=44.38 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=57.5
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD 131 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 131 (211)
..+.+.|+|+|+...- .....+..+|.++++...+. .+...+ ..+.+.+... +.|+.+|+|+.|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 3467889999975321 22345688999999999774 355555 6666666654 6778899999986432
Q ss_pred ccCCccccHHHHHHHHHHhCCceEE
Q 028239 132 HVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
...+..++.+..+. +++
T Consensus 159 -------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 159 -------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred -------hHHHHHHHHHHcCC-CeE
Confidence 23456677777776 544
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.95 E-value=0.00087 Score=45.90 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFP 32 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~ 32 (211)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 452
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.011 Score=45.98 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCCcCcccc----cccc--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 53 IVNLGLWDTAGQEDYSRL----RPLS--YRGADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.+.+.++||||....+.. +..+ ....+-.++|.|++. .....+. ...+.. -.+-=++.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~----~~~f~~---~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI----ITNFKD---IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH----HHHhCC---CCCCEEEEEeecCCCC
Confidence 356779999997543321 1111 124567899999764 3333332 233332 1233577999997653
Q ss_pred ccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
- -.+..++...+. |+..++
T Consensus 227 ~--------------G~~l~~~~~~~~-Pi~~it 245 (270)
T PRK06731 227 S--------------GELLKIPAVSSA-PIVLMT 245 (270)
T ss_pred c--------------cHHHHHHHHHCc-CEEEEe
Confidence 2 334455566665 554443
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.93 E-value=0.00079 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999887764
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0008 Score=50.93 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+++|++|+|||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988763
No 455
>PRK03839 putative kinase; Provisional
Probab=96.91 E-value=0.00084 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
+|+++|.||+||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.88 E-value=0.00083 Score=45.73 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988765
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.86 E-value=0.00098 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|+.++|||||+..|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.85 E-value=0.0011 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.84 E-value=0.001 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.|+|+|++|+|||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996653
No 460
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.83 E-value=0.0011 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988665
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.83 E-value=0.0011 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
.-|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.81 E-value=0.0012 Score=43.71 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 028239 8 KCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~ 27 (211)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999875
No 463
>PRK14532 adenylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 464
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.81 E-value=0.0015 Score=48.58 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
--|+|+|++|+|||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999988765
No 465
>PRK13949 shikimate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
+|+|+|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999977643
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=96.78 E-value=0.0014 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999998754
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.78 E-value=0.047 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.-.|++.|+.|+|||||++.+++..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 3589999999999999999988654
No 468
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0012 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 028239 7 IKCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~ 27 (211)
++|+|.|.||+||||++++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999987
No 469
>PRK14531 adenylate kinase; Provisional
Probab=96.76 E-value=0.0014 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988553
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.76 E-value=0.0013 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 471
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.001 Score=46.35 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...+|+|.|.||+|||||..++..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 457999999999999999999874
No 472
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.75 E-value=0.0011 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+++|++|+|||+|+..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999977653
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.72 E-value=0.0014 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 474
>PRK08233 hypothetical protein; Provisional
Probab=96.71 E-value=0.0018 Score=47.08 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366888999999999999999764
No 475
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.71 E-value=0.0013 Score=48.39 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
+|+|+|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 476
>PRK02496 adk adenylate kinase; Provisional
Probab=96.70 E-value=0.0017 Score=47.48 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+|+|+|+||+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 477
>PHA00729 NTP-binding motif containing protein
Probab=96.70 E-value=0.0017 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...+|+|.|+||+|||+|..++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999988764
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.69 E-value=0.0017 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-.++++|++|+|||||++.+++-.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988754
No 479
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.68 E-value=0.0014 Score=49.09 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 480
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0016 Score=48.98 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999877
No 481
>PLN02200 adenylate kinase family protein
Probab=96.67 E-value=0.0023 Score=48.77 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..+.|+|+|+|||||||+...|...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988653
No 482
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.67 E-value=0.0017 Score=47.40 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+++|+|||||||+...+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988653
No 483
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.65 E-value=0.0017 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
++++||.|+|||||++++.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999873
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.65 E-value=0.002 Score=46.88 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 028239 8 KCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~ 27 (211)
.++++|+.|+|||||++.++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999885
No 485
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.63 E-value=0.0018 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~ 30 (211)
|+|.|++|+||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887654
No 486
>PRK06547 hypothetical protein; Provisional
Probab=96.62 E-value=0.0024 Score=46.29 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
......|+|.|++|||||||.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678899999999999999998754
No 487
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.60 E-value=0.011 Score=47.72 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFP 32 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~ 32 (211)
..+|+|.|+.|+|||||++.+++.-.+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 467999999999999999999876543
No 488
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0015 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-.=+++.||+|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999999998765
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.59 E-value=0.0026 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-+|+++|++|+||||+...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999988754
No 490
>PLN02674 adenylate kinase
Probab=96.59 E-value=0.0023 Score=48.94 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...+|+++|+||+||+|+...|..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998865
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.0028 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999988764
No 492
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.59 E-value=0.0018 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|.|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 679999999999999988764
No 493
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.58 E-value=0.0035 Score=49.09 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
+-..++++|++|.|||+++++|...-
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 44579999999999999999998744
No 494
>PRK00625 shikimate kinase; Provisional
Probab=96.58 E-value=0.0022 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 495
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.58 E-value=0.0022 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||+|-+.+=
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 6899999999999999987653
No 496
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.55 E-value=0.0023 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998754
No 497
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.55 E-value=0.0068 Score=48.65 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=23.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPT 33 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~ 33 (211)
..+|+|.|++|+|||||++.++......
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 4689999999999999999998755433
No 498
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.55 E-value=0.0019 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|.|++|+|||++++.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 499
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.0045 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF 31 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~ 31 (211)
.+|++.|..|+|||||+|.|..-..
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5899999999999999999987654
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.54 E-value=0.0022 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
Done!