Query 028239
Match_columns 211
No_of_seqs 134 out of 1626
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.1E-41 7E-46 253.3 17.7 166 4-181 11-178 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 1.9E-40 6.6E-45 247.6 20.3 209 1-211 4-212 (212)
3 4dsu_A GTPase KRAS, isoform 2B 100.0 3.3E-36 1.1E-40 220.3 19.4 185 4-201 2-189 (189)
4 3t5g_A GTP-binding protein RHE 100.0 1.8E-35 6.1E-40 215.3 21.3 170 1-182 1-172 (181)
5 3reg_A RHO-like small GTPase; 100.0 3.3E-35 1.1E-39 216.4 22.3 172 3-182 20-191 (194)
6 3oes_A GTPase rhebl1; small GT 100.0 1.1E-35 3.9E-40 220.2 18.5 170 1-182 19-190 (201)
7 2bov_A RAla, RAS-related prote 100.0 1.4E-35 4.8E-40 220.0 18.9 165 4-180 12-178 (206)
8 2atx_A Small GTP binding prote 100.0 6.5E-35 2.2E-39 214.7 21.7 177 3-179 15-193 (194)
9 3bwd_D RAC-like GTP-binding pr 100.0 5.8E-36 2E-40 217.9 15.7 179 1-179 3-181 (182)
10 2q3h_A RAS homolog gene family 100.0 5.7E-35 1.9E-39 216.2 20.5 178 3-180 17-196 (201)
11 3q3j_B RHO-related GTP-binding 100.0 4.3E-35 1.5E-39 219.2 20.0 180 4-183 25-207 (214)
12 1m7b_A RND3/RHOE small GTP-bin 100.0 6.6E-35 2.3E-39 213.1 19.3 177 3-179 4-183 (184)
13 3c5c_A RAS-like protein 12; GD 100.0 7.8E-35 2.7E-39 213.4 19.8 165 2-179 17-186 (187)
14 2bcg_Y Protein YP2, GTP-bindin 100.0 2.9E-34 9.9E-39 213.2 23.0 171 3-185 5-177 (206)
15 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.8E-34 6.2E-39 210.5 21.3 180 4-183 3-184 (186)
16 2iwr_A Centaurin gamma 1; ANK 100.0 1.4E-34 4.7E-39 210.0 18.2 166 1-181 2-171 (178)
17 3kkq_A RAS-related protein M-R 100.0 2.2E-34 7.6E-39 209.8 19.3 165 3-179 15-182 (183)
18 3ihw_A Centg3; RAS, centaurin, 100.0 2.6E-34 9E-39 210.1 19.6 164 2-180 16-181 (184)
19 1z08_A RAS-related protein RAB 100.0 4.6E-34 1.6E-38 205.5 20.3 166 2-179 2-169 (170)
20 2j1l_A RHO-related GTP-binding 100.0 2.5E-34 8.5E-39 215.0 19.5 178 4-181 32-211 (214)
21 3tw8_B RAS-related protein RAB 100.0 5.4E-34 1.9E-38 207.0 20.7 168 3-182 6-174 (181)
22 1c1y_A RAS-related protein RAP 100.0 4.6E-34 1.6E-38 204.8 19.4 163 5-178 2-166 (167)
23 1gwn_A RHO-related GTP-binding 100.0 2.9E-34 1E-38 213.3 18.7 176 4-179 26-204 (205)
24 2fv8_A H6, RHO-related GTP-bin 100.0 1.1E-33 3.6E-38 210.5 21.4 180 3-182 22-203 (207)
25 1u8z_A RAS-related protein RAL 100.0 5E-34 1.7E-38 204.6 18.8 163 5-179 3-167 (168)
26 2gf0_A GTP-binding protein DI- 100.0 1.6E-34 5.6E-39 213.2 16.7 167 3-182 5-174 (199)
27 2fn4_A P23, RAS-related protei 100.0 4.3E-34 1.5E-38 207.6 18.7 166 3-180 6-173 (181)
28 2gco_A H9, RHO-related GTP-bin 100.0 1.6E-33 5.4E-38 208.7 22.0 176 4-179 23-200 (201)
29 2fu5_C RAS-related protein RAB 100.0 2.8E-34 9.7E-39 209.3 17.3 164 4-179 6-171 (183)
30 3cpj_B GTP-binding protein YPT 100.0 1.5E-33 5.2E-38 212.0 21.8 173 2-186 9-183 (223)
31 4gzl_A RAS-related C3 botulinu 100.0 4.7E-34 1.6E-38 212.0 18.6 175 3-177 27-203 (204)
32 2ew1_A RAS-related protein RAB 100.0 5.8E-34 2E-38 211.1 19.0 165 4-180 24-190 (201)
33 1r2q_A RAS-related protein RAB 100.0 1.4E-33 4.9E-38 202.7 19.7 165 3-179 3-169 (170)
34 1z2a_A RAS-related protein RAB 100.0 1.4E-33 4.6E-38 202.6 19.4 165 3-179 2-167 (168)
35 3tkl_A RAS-related protein RAB 100.0 1.7E-33 5.8E-38 207.2 20.3 168 4-183 14-183 (196)
36 2efe_B Small GTP-binding prote 100.0 2.6E-33 8.9E-38 203.7 20.9 167 3-181 9-177 (181)
37 2a5j_A RAS-related protein RAB 100.0 1.2E-33 4E-38 207.6 19.2 165 3-179 18-184 (191)
38 1z0f_A RAB14, member RAS oncog 100.0 2E-33 6.9E-38 203.7 20.1 165 3-179 12-178 (179)
39 2nzj_A GTP-binding protein REM 100.0 1.1E-33 3.6E-38 204.5 18.5 164 4-179 2-169 (175)
40 2hup_A RAS-related protein RAB 100.0 4.3E-34 1.5E-38 211.8 16.8 166 3-179 26-193 (201)
41 2gf9_A RAS-related protein RAB 100.0 3.9E-33 1.3E-37 204.5 21.5 165 3-179 19-185 (189)
42 2hxs_A RAB-26, RAS-related pro 100.0 5.2E-34 1.8E-38 206.8 16.5 168 3-182 3-176 (178)
43 2atv_A RERG, RAS-like estrogen 100.0 1.2E-33 4.2E-38 208.4 18.6 166 1-179 23-191 (196)
44 2g6b_A RAS-related protein RAB 100.0 7E-33 2.4E-37 201.2 22.2 167 3-181 7-176 (180)
45 3q72_A GTP-binding protein RAD 100.0 1.5E-33 5E-38 202.2 18.2 161 6-179 2-164 (166)
46 2bme_A RAB4A, RAS-related prot 100.0 1.3E-33 4.5E-38 206.1 18.3 165 4-180 8-174 (186)
47 1z0j_A RAB-22, RAS-related pro 100.0 5.8E-33 2E-37 199.6 21.1 165 3-179 3-169 (170)
48 2a9k_A RAS-related protein RAL 100.0 1E-33 3.5E-38 206.6 17.3 163 5-179 17-181 (187)
49 1kao_A RAP2A; GTP-binding prot 100.0 1.5E-33 5.2E-38 201.9 17.6 162 5-178 2-165 (167)
50 1ek0_A Protein (GTP-binding pr 100.0 4.2E-33 1.4E-37 200.3 19.9 166 5-179 2-169 (170)
51 2o52_A RAS-related protein RAB 100.0 8.5E-34 2.9E-38 210.0 15.9 165 3-179 22-188 (200)
52 3q85_A GTP-binding protein REM 100.0 3.5E-33 1.2E-37 200.8 18.5 163 6-180 2-168 (169)
53 2oil_A CATX-8, RAS-related pro 100.0 5.3E-33 1.8E-37 204.3 19.8 165 3-179 22-188 (193)
54 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.3E-33 2.8E-37 200.3 20.5 166 3-180 4-175 (177)
55 2erx_A GTP-binding protein DI- 100.0 2.6E-33 8.8E-38 201.7 17.1 163 5-179 2-167 (172)
56 2g3y_A GTP-binding protein GEM 100.0 3.5E-33 1.2E-37 208.2 18.3 164 3-178 34-202 (211)
57 2p5s_A RAS and EF-hand domain 100.0 2.9E-33 9.9E-38 206.9 17.8 172 2-179 24-197 (199)
58 2fg5_A RAB-22B, RAS-related pr 100.0 4.8E-33 1.6E-37 204.6 18.7 165 4-180 21-187 (192)
59 3con_A GTPase NRAS; structural 100.0 1.2E-32 4.2E-37 201.8 20.8 163 5-180 20-184 (190)
60 1g16_A RAS-related protein SEC 100.0 4.6E-33 1.6E-37 200.2 18.0 163 5-180 2-166 (170)
61 1vg8_A RAS-related protein RAB 100.0 8.5E-33 2.9E-37 205.2 19.9 169 3-183 5-179 (207)
62 3cbq_A GTP-binding protein REM 100.0 2.7E-33 9.3E-38 206.5 17.0 166 4-181 21-190 (195)
63 3bc1_A RAS-related protein RAB 100.0 5.1E-33 1.8E-37 204.0 18.3 164 4-179 9-185 (195)
64 2il1_A RAB12; G-protein, GDP, 100.0 2.3E-33 7.9E-38 206.3 16.4 166 3-179 23-190 (192)
65 2yc2_C IFT27, small RAB-relate 100.0 6.1E-34 2.1E-38 211.4 13.4 171 2-184 16-197 (208)
66 2y8e_A RAB-protein 6, GH09086P 100.0 5.7E-33 2E-37 201.3 18.1 164 4-179 12-177 (179)
67 1zbd_A Rabphilin-3A; G protein 100.0 1.6E-32 5.6E-37 203.2 20.9 165 4-180 6-172 (203)
68 1x3s_A RAS-related protein RAB 100.0 1.6E-32 5.6E-37 201.7 20.4 165 5-182 14-181 (195)
69 1ky3_A GTP-binding protein YPT 100.0 4.5E-33 1.5E-37 202.3 17.2 167 3-179 5-178 (182)
70 3clv_A RAB5 protein, putative; 100.0 2.5E-32 8.7E-37 201.9 20.9 165 1-179 2-204 (208)
71 2ce2_X GTPase HRAS; signaling 100.0 2.3E-32 7.8E-37 195.4 19.8 161 6-179 3-165 (166)
72 1z06_A RAS-related protein RAB 100.0 1.5E-32 5.2E-37 201.3 18.1 164 3-178 17-187 (189)
73 3dz8_A RAS-related protein RAB 100.0 1.1E-33 3.6E-38 207.9 10.8 164 4-179 21-186 (191)
74 2cjw_A GTP-binding protein GEM 100.0 6E-32 2.1E-36 198.9 19.4 164 4-179 4-172 (192)
75 2f7s_A C25KG, RAS-related prot 100.0 3.7E-33 1.2E-37 208.9 12.7 165 3-179 22-199 (217)
76 3cph_A RAS-related protein SEC 100.0 2E-31 6.7E-36 198.7 20.1 163 4-179 18-182 (213)
77 3t1o_A Gliding protein MGLA; G 100.0 1.2E-32 4.1E-37 202.6 11.3 165 2-180 10-193 (198)
78 2wkq_A NPH1-1, RAS-related C3 100.0 4.6E-31 1.6E-35 209.2 21.3 176 5-180 154-331 (332)
79 4djt_A GTP-binding nuclear pro 100.0 5.7E-32 2E-36 202.5 13.2 170 3-184 8-180 (218)
80 3l0i_B RAS-related protein RAB 100.0 2.7E-33 9.2E-38 207.1 5.2 165 4-180 31-197 (199)
81 3gj0_A GTP-binding nuclear pro 100.0 7.3E-32 2.5E-36 202.4 12.6 166 3-182 12-178 (221)
82 3th5_A RAS-related C3 botulinu 100.0 3.6E-34 1.2E-38 212.5 0.0 174 4-177 28-203 (204)
83 4bas_A ADP-ribosylation factor 100.0 3.8E-31 1.3E-35 195.0 16.3 167 3-181 14-191 (199)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.1E-30 3.6E-35 193.1 16.6 157 4-177 23-197 (198)
85 1m2o_B GTP-binding protein SAR 100.0 2.9E-30 9.8E-35 189.5 17.9 156 4-176 21-189 (190)
86 1zj6_A ADP-ribosylation factor 100.0 3E-30 1E-34 188.8 17.3 163 4-184 14-183 (187)
87 1ksh_A ARF-like protein 2; sma 100.0 5.8E-30 2E-34 186.9 18.5 159 4-180 16-181 (186)
88 2h57_A ADP-ribosylation factor 100.0 4.3E-30 1.5E-34 188.4 17.3 160 4-179 19-187 (190)
89 1upt_A ARL1, ADP-ribosylation 100.0 4.6E-30 1.6E-34 184.7 16.9 164 4-180 5-170 (171)
90 1r8s_A ADP-ribosylation factor 100.0 3.9E-31 1.3E-35 189.1 10.9 155 7-179 1-162 (164)
91 2b6h_A ADP-ribosylation factor 100.0 5.4E-31 1.8E-35 193.7 11.8 159 3-179 26-191 (192)
92 1zd9_A ADP-ribosylation factor 100.0 4.8E-30 1.7E-34 187.9 16.4 159 4-179 20-185 (188)
93 3llu_A RAS-related GTP-binding 100.0 1.4E-30 4.6E-35 192.1 13.4 170 3-178 17-196 (196)
94 2h17_A ADP-ribosylation factor 100.0 4.6E-30 1.6E-34 186.9 14.2 156 3-176 18-180 (181)
95 2x77_A ADP-ribosylation factor 100.0 3E-30 1E-34 189.0 13.3 159 4-180 20-185 (189)
96 2f9l_A RAB11B, member RAS onco 100.0 3.3E-29 1.1E-33 185.1 18.6 164 4-179 3-168 (199)
97 2zej_A Dardarin, leucine-rich 100.0 6.5E-31 2.2E-35 192.0 9.3 167 6-183 2-182 (184)
98 1fzq_A ADP-ribosylation factor 100.0 4E-30 1.4E-34 187.3 13.3 158 4-179 14-178 (181)
99 1moz_A ARL1, ADP-ribosylation 100.0 9.4E-30 3.2E-34 185.2 13.4 158 4-178 16-179 (183)
100 1oix_A RAS-related protein RAB 100.0 6.2E-28 2.1E-32 177.2 21.5 162 4-177 27-190 (191)
101 2fh5_B SR-beta, signal recogni 100.0 2.6E-29 8.8E-34 187.5 13.5 173 2-176 3-213 (214)
102 2lkc_A Translation initiation 100.0 8.7E-28 3E-32 173.9 16.3 160 3-181 5-173 (178)
103 3c5h_A Glucocorticoid receptor 100.0 7.8E-29 2.7E-33 189.9 11.3 163 3-178 16-254 (255)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 4.4E-28 1.5E-32 190.4 15.4 172 5-184 2-186 (307)
105 3r7w_B Gtpase2, GTP-binding pr 100.0 2.7E-29 9.2E-34 196.2 8.1 169 8-186 1-181 (331)
106 3o47_A ADP-ribosylation factor 100.0 9.2E-29 3.1E-33 195.9 10.1 160 4-180 163-328 (329)
107 2wji_A Ferrous iron transport 100.0 9.4E-28 3.2E-32 172.2 14.2 152 6-177 3-163 (165)
108 2qu8_A Putative nucleolar GTP- 100.0 1.4E-27 4.8E-32 180.0 15.5 166 4-181 27-207 (228)
109 2dyk_A GTP-binding protein; GT 99.9 6.3E-27 2.2E-31 166.6 12.2 150 7-177 2-160 (161)
110 1svi_A GTP-binding protein YSX 99.9 3.9E-27 1.3E-31 173.0 11.3 159 2-178 19-194 (195)
111 3lvq_E ARF-GAP with SH3 domain 99.9 3.5E-26 1.2E-30 190.6 18.1 164 4-184 320-489 (497)
112 3dpu_A RAB family protein; roc 99.9 3.7E-27 1.3E-31 198.0 12.0 166 2-182 37-211 (535)
113 2wjg_A FEOB, ferrous iron tran 99.9 1.6E-26 5.4E-31 168.8 12.4 159 3-181 4-171 (188)
114 3iev_A GTP-binding protein ERA 99.9 1.6E-25 5.6E-30 175.8 18.1 164 2-180 6-183 (308)
115 2gj8_A MNME, tRNA modification 99.9 3.9E-26 1.3E-30 164.9 13.1 153 5-179 3-166 (172)
116 3pqc_A Probable GTP-binding pr 99.9 2.5E-26 8.7E-31 168.4 12.0 162 2-179 19-194 (195)
117 3a1s_A Iron(II) transport prot 99.9 9.4E-26 3.2E-30 172.9 15.5 155 4-178 3-166 (258)
118 2cxx_A Probable GTP-binding pr 99.9 8.9E-27 3E-31 170.3 8.3 158 7-182 2-187 (190)
119 3b1v_A Ferrous iron uptake tra 99.9 1.2E-25 4.1E-30 173.3 9.8 153 5-178 2-163 (272)
120 1wf3_A GTP-binding protein; GT 99.9 1.5E-24 5.2E-29 169.5 14.7 158 5-179 6-173 (301)
121 3gee_A MNME, tRNA modification 99.9 3.2E-24 1.1E-28 176.8 15.6 156 5-178 232-397 (476)
122 3iby_A Ferrous iron transport 99.9 3.3E-25 1.1E-29 169.6 9.0 150 7-176 2-164 (256)
123 4dhe_A Probable GTP-binding pr 99.9 6.3E-25 2.2E-29 164.6 10.0 165 3-181 26-213 (223)
124 3i8s_A Ferrous iron transport 99.9 3.2E-25 1.1E-29 171.4 8.0 156 5-180 2-170 (274)
125 3k53_A Ferrous iron transport 99.9 6.3E-24 2.2E-28 164.0 12.9 156 6-180 3-167 (271)
126 2hjg_A GTP-binding protein ENG 99.9 1.9E-24 6.7E-29 177.2 10.5 159 5-179 174-349 (436)
127 1nrj_B SR-beta, signal recogni 99.9 4.5E-25 1.5E-29 164.9 5.2 143 3-165 9-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 4.2E-24 1.4E-28 176.2 11.3 161 4-180 193-370 (456)
129 1mky_A Probable GTP-binding pr 99.9 3E-23 1E-27 170.3 14.1 152 7-178 2-165 (439)
130 2e87_A Hypothetical protein PH 99.9 1.6E-22 5.5E-27 161.9 17.5 160 4-179 165-336 (357)
131 3qq5_A Small GTP-binding prote 99.9 2.8E-24 9.7E-29 174.5 7.0 157 4-180 32-197 (423)
132 1cip_A Protein (guanine nucleo 99.9 4.8E-23 1.6E-27 163.9 13.5 130 47-179 188-344 (353)
133 1xzp_A Probable tRNA modificat 99.9 1.8E-23 6.2E-28 172.5 11.0 151 6-178 243-404 (482)
134 3ohm_A Guanine nucleotide-bind 99.9 6.2E-23 2.1E-27 161.1 12.4 132 47-182 162-321 (327)
135 3sjy_A Translation initiation 99.9 4.3E-22 1.5E-26 161.8 16.8 169 2-180 4-193 (403)
136 2xtz_A Guanine nucleotide-bind 99.9 1.9E-23 6.6E-28 166.1 8.1 127 52-179 181-345 (354)
137 1ega_A Protein (GTP-binding pr 99.9 9.4E-22 3.2E-26 153.8 16.9 159 4-179 6-175 (301)
138 1lnz_A SPO0B-associated GTP-bi 99.9 8.9E-23 3.1E-27 161.7 10.4 158 8-181 160-332 (342)
139 3geh_A MNME, tRNA modification 99.9 1.3E-22 4.5E-27 166.7 11.3 154 5-181 223-386 (462)
140 2ywe_A GTP-binding protein LEP 99.9 3.7E-22 1.3E-26 168.0 13.8 165 1-181 1-186 (600)
141 1mky_A Probable GTP-binding pr 99.9 2.1E-21 7.1E-26 159.4 16.6 159 5-179 179-355 (439)
142 2xtp_A GTPase IMAP family memb 99.9 7.1E-22 2.4E-26 151.6 12.8 163 4-179 20-208 (260)
143 1s0u_A EIF-2-gamma, translatio 99.9 2.3E-21 8E-26 157.7 15.9 166 1-180 3-199 (408)
144 3cb4_D GTP-binding protein LEP 99.9 6.6E-22 2.3E-26 166.7 12.6 161 5-181 3-184 (599)
145 1zcb_A G alpha I/13; GTP-bindi 99.9 2.5E-21 8.5E-26 154.5 15.2 124 54-179 201-353 (362)
146 3izy_P Translation initiation 99.9 1E-23 3.4E-28 175.4 0.9 161 4-179 2-168 (537)
147 4fid_A G protein alpha subunit 99.9 6.3E-22 2.1E-26 155.9 10.6 125 53-179 160-328 (340)
148 1wb1_A Translation elongation 99.9 1.3E-21 4.4E-26 162.0 12.8 157 5-178 18-188 (482)
149 2hjg_A GTP-binding protein ENG 99.9 3.9E-23 1.3E-27 169.5 3.7 152 7-179 4-165 (436)
150 3lxx_A GTPase IMAP family memb 99.9 1E-20 3.4E-25 143.4 13.5 168 3-179 26-214 (239)
151 2qtf_A Protein HFLX, GTP-bindi 99.9 1.7E-20 5.8E-25 150.0 15.3 160 7-179 179-354 (364)
152 2ged_A SR-beta, signal recogni 99.9 1.9E-21 6.7E-26 142.3 8.9 114 4-126 46-172 (193)
153 3j2k_7 ERF3, eukaryotic polype 99.8 1.7E-20 5.7E-25 153.8 14.3 160 3-171 14-217 (439)
154 1jny_A EF-1-alpha, elongation 99.8 2.3E-21 7.9E-26 158.9 8.9 163 1-171 1-205 (435)
155 2c78_A Elongation factor TU-A; 99.8 4.7E-21 1.6E-25 155.8 10.7 167 3-180 8-213 (405)
156 1kk1_A EIF2gamma; initiation o 99.8 2.3E-20 7.8E-25 152.0 14.6 165 2-180 6-201 (410)
157 1g7s_A Translation initiation 99.8 1.8E-20 6.1E-25 158.2 14.3 168 4-178 3-217 (594)
158 3t5d_A Septin-7; GTP-binding p 99.8 2.5E-21 8.7E-26 149.6 8.0 162 2-177 4-202 (274)
159 3tr5_A RF-3, peptide chain rel 99.8 2.6E-20 8.8E-25 155.4 14.5 115 5-125 12-149 (528)
160 2qag_A Septin-2, protein NEDD5 99.8 7.2E-22 2.5E-26 158.1 4.6 161 4-179 35-233 (361)
161 3lxw_A GTPase IMAP family memb 99.8 6.1E-20 2.1E-24 139.7 14.8 167 3-179 18-208 (247)
162 3p26_A Elongation factor 1 alp 99.8 9.8E-21 3.3E-25 157.1 11.2 153 4-169 31-228 (483)
163 1d2e_A Elongation factor TU (E 99.8 2.1E-20 7.3E-25 151.5 11.9 165 5-180 2-196 (397)
164 1zo1_I IF2, translation initia 99.8 2.1E-21 7E-26 160.4 4.3 160 4-176 2-164 (501)
165 1zun_B Sulfate adenylate trans 99.8 8.8E-20 3E-24 149.5 13.3 154 4-169 22-214 (434)
166 4dcu_A GTP-binding protein ENG 99.8 2.9E-21 9.8E-26 159.3 4.2 152 6-178 23-184 (456)
167 2elf_A Protein translation elo 99.8 2.9E-20 9.9E-25 149.0 9.6 147 8-179 23-180 (370)
168 1r5b_A Eukaryotic peptide chai 99.8 7.1E-21 2.4E-25 157.1 6.2 159 3-170 40-243 (467)
169 1f60_A Elongation factor EEF1A 99.8 4.1E-20 1.4E-24 152.3 9.9 157 1-169 1-202 (458)
170 3izq_1 HBS1P, elongation facto 99.8 1.2E-19 4.2E-24 153.8 12.7 156 4-169 165-362 (611)
171 3avx_A Elongation factor TS, e 99.8 8E-20 2.7E-24 161.3 9.8 167 3-180 293-487 (1289)
172 2aka_B Dynamin-1; fusion prote 99.8 2.6E-20 8.8E-25 145.5 5.9 158 5-175 25-249 (299)
173 1pui_A ENGB, probable GTP-bind 99.8 3.3E-19 1.1E-23 132.1 10.9 162 3-179 23-199 (210)
174 3def_A T7I23.11 protein; chlor 99.8 5.2E-19 1.8E-23 135.8 11.7 118 5-125 35-166 (262)
175 1u0l_A Probable GTPase ENGC; p 99.8 7.1E-20 2.4E-24 143.2 6.4 135 21-175 32-169 (301)
176 2dy1_A Elongation factor G; tr 99.8 1.1E-18 3.7E-23 149.6 12.7 116 4-123 7-139 (665)
177 3mca_A HBS1, elongation factor 99.8 2.6E-19 8.8E-24 151.4 6.5 162 4-177 175-395 (592)
178 2h5e_A Peptide chain release f 99.8 1.5E-17 5.1E-22 138.9 16.9 115 5-125 12-149 (529)
179 2qnr_A Septin-2, protein NEDD5 99.8 2.3E-19 8E-24 140.2 4.8 162 5-180 17-215 (301)
180 1azs_C GS-alpha; complex (lyas 99.8 6.1E-18 2.1E-22 136.0 13.0 147 32-181 187-387 (402)
181 2j69_A Bacterial dynamin-like 99.8 2.3E-18 8E-23 148.1 10.8 173 5-182 68-328 (695)
182 1dar_A EF-G, elongation factor 99.8 1.5E-17 5E-22 143.1 15.1 116 4-125 10-144 (691)
183 1h65_A Chloroplast outer envel 99.8 6.4E-18 2.2E-22 130.2 11.2 119 5-126 38-170 (270)
184 2xex_A Elongation factor G; GT 99.7 3.3E-17 1.1E-21 140.9 16.2 117 3-125 7-142 (693)
185 1udx_A The GTP-binding protein 99.7 1.7E-17 5.7E-22 134.5 13.1 159 8-182 159-328 (416)
186 2rdo_7 EF-G, elongation factor 99.7 8.9E-17 3E-21 138.4 17.1 118 4-125 8-149 (704)
187 2qag_C Septin-7; cell cycle, c 99.7 1.4E-17 4.9E-22 134.9 10.6 160 5-178 30-226 (418)
188 1jwy_B Dynamin A GTPase domain 99.7 3.3E-18 1.1E-22 134.5 4.7 113 54-180 131-263 (315)
189 1wxq_A GTP-binding protein; st 99.7 1.9E-17 6.6E-22 133.7 8.6 84 7-90 1-114 (397)
190 3t34_A Dynamin-related protein 99.7 6.9E-18 2.4E-22 135.2 5.5 154 6-173 34-255 (360)
191 2wsm_A Hydrogenase expression/ 99.7 1.4E-16 4.7E-21 119.0 9.9 156 5-181 29-216 (221)
192 1jal_A YCHF protein; nucleotid 99.6 6E-15 2E-19 117.2 16.1 83 7-89 3-108 (363)
193 2hf9_A Probable hydrogenase ni 99.6 2.4E-17 8.2E-22 123.5 1.9 153 5-178 37-223 (226)
194 3vqt_A RF-3, peptide chain rel 99.6 4.6E-15 1.6E-19 124.4 15.2 114 5-124 30-166 (548)
195 3p32_A Probable GTPase RV1496/ 99.6 3.4E-16 1.2E-20 125.0 6.6 104 54-179 172-284 (355)
196 2x2e_A Dynamin-1; nitration, h 99.6 6.8E-17 2.3E-21 129.0 2.4 158 5-175 30-254 (353)
197 1n0u_A EF-2, elongation factor 99.6 7.4E-16 2.5E-20 135.1 9.1 118 3-124 16-164 (842)
198 2qpt_A EH domain-containing pr 99.6 9.6E-16 3.3E-20 128.6 7.2 118 5-125 64-233 (550)
199 2dby_A GTP-binding protein; GD 99.6 7E-14 2.4E-18 111.6 14.0 83 7-89 2-111 (368)
200 2www_A Methylmalonic aciduria 99.5 2.7E-15 9.3E-20 119.4 5.1 103 54-178 167-278 (349)
201 4fn5_A EF-G 1, elongation fact 99.5 2.7E-13 9.1E-18 117.2 15.6 114 7-124 14-151 (709)
202 1yrb_A ATP(GTP)binding protein 99.5 2.2E-14 7.4E-19 109.8 7.3 118 54-177 109-255 (262)
203 2p67_A LAO/AO transport system 99.5 5.6E-15 1.9E-19 117.3 3.4 104 54-178 149-260 (341)
204 3j25_A Tetracycline resistance 99.5 1.1E-14 3.8E-19 124.3 4.9 170 7-182 3-242 (638)
205 4a9a_A Ribosome-interacting GT 99.5 6E-13 2.1E-17 106.3 14.1 142 4-152 70-222 (376)
206 2yv5_A YJEQ protein; hydrolase 99.5 2.6E-13 9E-18 105.9 10.8 98 64-175 66-165 (302)
207 3zvr_A Dynamin-1; hydrolase, D 99.5 3.9E-14 1.3E-18 121.8 6.5 157 5-175 50-274 (772)
208 2qm8_A GTPase/ATPase; G protei 99.3 1.3E-12 4.6E-17 103.4 6.9 104 54-178 148-260 (337)
209 3l82_B F-box only protein 4; T 99.3 3.6E-12 1.2E-16 92.9 4.9 104 63-179 111-223 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 3.6E-12 1.2E-16 102.3 4.7 88 5-92 21-131 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 5.9E-10 2E-14 89.6 13.9 85 5-89 19-127 (392)
212 3l2o_B F-box only protein 4; s 99.1 5.5E-11 1.9E-15 90.7 6.5 107 61-180 194-309 (312)
213 3h2y_A GTPase family protein; 99.0 5E-10 1.7E-14 89.6 6.5 98 63-177 55-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 1.6E-09 5.4E-14 86.8 4.8 98 63-177 57-160 (369)
215 2qag_B Septin-6, protein NEDD5 98.9 5.8E-08 2E-12 78.6 13.7 115 6-125 42-191 (427)
216 3ec1_A YQEH GTPase; atnos1, at 98.8 4.1E-10 1.4E-14 90.2 -1.1 139 7-166 163-318 (369)
217 3sop_A Neuronal-specific septi 98.8 4.9E-08 1.7E-12 74.8 10.4 115 6-125 2-155 (270)
218 2j37_W Signal recognition part 98.8 6.4E-09 2.2E-13 86.1 5.5 150 4-176 99-310 (504)
219 1puj_A YLQF, conserved hypothe 98.7 1.2E-08 4.2E-13 78.7 5.1 100 58-178 3-105 (282)
220 3h2y_A GTPase family protein; 98.7 9E-10 3.1E-14 88.2 -2.6 111 7-126 161-289 (368)
221 1tq4_A IIGP1, interferon-induc 98.7 3.9E-07 1.4E-11 73.7 12.6 170 6-181 69-255 (413)
222 1puj_A YLQF, conserved hypothe 98.5 8.8E-08 3E-12 73.9 5.4 57 4-65 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 6.9E-08 2.3E-12 73.7 3.5 56 7-66 100-156 (262)
224 1f5n_A Interferon-induced guan 98.4 4E-07 1.4E-11 76.7 5.3 63 4-66 36-103 (592)
225 3dm5_A SRP54, signal recogniti 98.2 4.1E-06 1.4E-10 68.2 8.6 135 5-160 99-274 (443)
226 3cnl_A YLQF, putative uncharac 98.2 4.8E-07 1.7E-11 69.0 2.8 94 61-176 4-98 (262)
227 1t9h_A YLOQ, probable GTPase E 98.2 1.8E-06 6.1E-11 67.2 5.0 89 70-171 79-169 (307)
228 2v3c_C SRP54, signal recogniti 98.1 8.3E-06 2.8E-10 66.5 8.5 64 54-124 181-252 (432)
229 3szr_A Interferon-induced GTP- 97.9 8.3E-06 2.8E-10 69.4 4.3 23 8-30 47-69 (608)
230 3kl4_A SRP54, signal recogniti 97.9 5.2E-06 1.8E-10 67.5 2.5 90 54-166 180-277 (433)
231 1bif_A 6-phosphofructo-2-kinas 97.8 4.6E-07 1.6E-11 74.8 -4.9 109 4-117 37-156 (469)
232 1j8m_F SRP54, signal recogniti 97.8 9.9E-06 3.4E-10 62.8 2.7 91 54-168 181-280 (297)
233 2rcn_A Probable GTPase ENGC; Y 97.8 0.00017 5.7E-09 57.3 9.6 83 74-172 127-212 (358)
234 3q5d_A Atlastin-1; G protein, 97.6 6.7E-05 2.3E-09 61.2 5.2 25 5-29 66-90 (447)
235 1ye8_A Protein THEP1, hypothet 97.3 0.00012 4.2E-09 52.3 3.2 23 7-29 1-23 (178)
236 3asz_A Uridine kinase; cytidin 97.3 0.00014 4.9E-09 53.1 3.2 28 1-28 1-28 (211)
237 1kgd_A CASK, peripheral plasma 97.2 0.00017 5.9E-09 51.5 3.0 22 8-29 7-28 (180)
238 1lvg_A Guanylate kinase, GMP k 97.2 0.00021 7.2E-09 51.9 3.0 22 7-28 5-26 (198)
239 4eun_A Thermoresistant glucoki 97.1 0.00027 9.1E-09 51.3 3.4 26 3-28 26-51 (200)
240 1qf9_A UMP/CMP kinase, protein 97.1 0.00032 1.1E-08 50.2 3.7 28 1-28 1-28 (194)
241 3tau_A Guanylate kinase, GMP k 97.1 0.00036 1.2E-08 51.0 3.7 24 7-30 9-32 (208)
242 2j41_A Guanylate kinase; GMP, 97.1 0.00032 1.1E-08 50.8 3.4 30 1-30 1-30 (207)
243 3ney_A 55 kDa erythrocyte memb 97.1 0.00037 1.3E-08 50.6 3.5 24 6-29 19-42 (197)
244 1y63_A LMAJ004144AAA protein; 97.1 0.00037 1.3E-08 49.8 3.6 29 1-29 5-33 (184)
245 1t9h_A YLOQ, probable GTPase E 97.1 0.00021 7.3E-09 55.5 2.4 23 8-30 175-197 (307)
246 1zp6_A Hypothetical protein AT 97.1 0.0003 1E-08 50.4 2.9 23 7-29 10-32 (191)
247 2yv5_A YJEQ protein; hydrolase 97.1 0.0017 5.9E-08 50.3 7.4 20 8-27 167-186 (302)
248 3tr0_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 50.9 3.0 22 8-29 9-30 (205)
249 3a00_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 50.3 2.9 21 9-29 4-24 (186)
250 4gp7_A Metallophosphoesterase; 97.0 0.00031 1.1E-08 49.7 2.8 20 8-27 11-30 (171)
251 1nn5_A Similar to deoxythymidy 97.0 0.00038 1.3E-08 50.8 3.1 28 1-28 4-31 (215)
252 1s96_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 51.4 3.0 23 8-30 18-40 (219)
253 2xxa_A Signal recognition part 97.0 0.001 3.4E-08 54.2 5.6 64 54-124 184-254 (433)
254 1znw_A Guanylate kinase, GMP k 97.0 0.00039 1.3E-08 50.7 2.9 22 8-29 22-43 (207)
255 1ex7_A Guanylate kinase; subst 97.0 0.00044 1.5E-08 49.7 3.1 21 9-29 4-24 (186)
256 1knq_A Gluconate kinase; ALFA/ 97.0 0.00067 2.3E-08 47.9 4.0 23 6-28 8-30 (175)
257 1z6g_A Guanylate kinase; struc 97.0 0.00041 1.4E-08 51.1 2.9 23 8-30 25-47 (218)
258 3c8u_A Fructokinase; YP_612366 96.9 0.00059 2E-08 49.8 3.3 25 5-29 21-45 (208)
259 3lw7_A Adenylate kinase relate 96.9 0.00061 2.1E-08 47.7 3.1 20 7-26 2-21 (179)
260 1kag_A SKI, shikimate kinase I 96.8 0.00064 2.2E-08 47.8 3.0 23 7-29 5-27 (173)
261 2qor_A Guanylate kinase; phosp 96.8 0.00066 2.2E-08 49.3 3.2 23 7-29 13-35 (204)
262 1htw_A HI0065; nucleotide-bind 96.8 0.00066 2.3E-08 47.4 2.9 23 8-30 35-57 (158)
263 3tif_A Uncharacterized ABC tra 96.8 0.00063 2.1E-08 50.8 3.0 23 8-30 33-55 (235)
264 2bdt_A BH3686; alpha-beta prot 96.8 0.00067 2.3E-08 48.6 2.9 21 8-28 4-24 (189)
265 3fb4_A Adenylate kinase; psych 96.8 0.00074 2.5E-08 49.4 3.2 22 7-28 1-22 (216)
266 3kb2_A SPBC2 prophage-derived 96.8 0.0007 2.4E-08 47.5 2.9 22 8-29 3-24 (173)
267 1ly1_A Polynucleotide kinase; 96.8 0.00094 3.2E-08 47.1 3.6 22 7-28 3-24 (181)
268 3dl0_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 49.3 3.2 22 7-28 1-22 (216)
269 2rcn_A Probable GTPase ENGC; Y 96.8 0.00075 2.6E-08 53.5 3.2 23 8-30 217-239 (358)
270 2cdn_A Adenylate kinase; phosp 96.8 0.001 3.6E-08 48.1 3.7 25 4-28 18-42 (201)
271 3sr0_A Adenylate kinase; phosp 96.8 0.00089 3.1E-08 48.9 3.3 22 7-28 1-22 (206)
272 2bbw_A Adenylate kinase 4, AK4 96.8 0.0009 3.1E-08 50.1 3.4 22 6-27 27-48 (246)
273 3n70_A Transport activator; si 96.7 0.0025 8.4E-08 43.6 5.3 25 6-30 24-48 (145)
274 1ukz_A Uridylate kinase; trans 96.7 0.0013 4.4E-08 47.6 4.0 26 3-28 12-37 (203)
275 2pcj_A ABC transporter, lipopr 96.7 0.00077 2.6E-08 49.9 2.8 23 8-30 32-54 (224)
276 2onk_A Molybdate/tungstate ABC 96.7 0.00091 3.1E-08 50.1 3.1 23 8-30 26-48 (240)
277 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 47.7 3.6 24 6-29 4-27 (204)
278 3tlx_A Adenylate kinase 2; str 96.7 0.0013 4.3E-08 49.3 3.9 25 4-28 27-51 (243)
279 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.7E-08 48.8 3.5 23 6-28 5-27 (227)
280 3vaa_A Shikimate kinase, SK; s 96.7 0.0011 3.8E-08 47.9 3.4 22 7-28 26-47 (199)
281 2i3b_A HCR-ntpase, human cance 96.7 0.00093 3.2E-08 48.1 2.9 22 8-29 3-24 (189)
282 1sgw_A Putative ABC transporte 96.7 0.00099 3.4E-08 49.0 3.0 23 8-30 37-59 (214)
283 3gfo_A Cobalt import ATP-bindi 96.7 0.00095 3.3E-08 51.0 3.0 23 8-30 36-58 (275)
284 1b0u_A Histidine permease; ABC 96.7 0.00097 3.3E-08 50.6 3.0 23 8-30 34-56 (262)
285 3t61_A Gluconokinase; PSI-biol 96.7 0.00099 3.4E-08 48.2 3.0 23 7-29 19-41 (202)
286 2cbz_A Multidrug resistance-as 96.7 0.00097 3.3E-08 49.8 3.0 22 8-29 33-54 (237)
287 3ec2_A DNA replication protein 96.7 0.0011 3.6E-08 47.1 3.0 23 7-29 39-61 (180)
288 4g1u_C Hemin import ATP-bindin 96.6 0.0011 3.6E-08 50.5 3.1 23 8-30 39-61 (266)
289 1g6h_A High-affinity branched- 96.6 0.001 3.6E-08 50.3 3.0 23 8-30 35-57 (257)
290 3cm0_A Adenylate kinase; ATP-b 96.6 0.0015 5.1E-08 46.5 3.7 23 6-28 4-26 (186)
291 1qhx_A CPT, protein (chloramph 96.6 0.0011 3.8E-08 46.8 3.0 23 7-29 4-26 (178)
292 2pze_A Cystic fibrosis transme 96.6 0.0011 3.8E-08 49.2 3.0 23 8-30 36-58 (229)
293 3uie_A Adenylyl-sulfate kinase 96.6 0.00092 3.2E-08 48.4 2.6 25 5-29 24-48 (200)
294 2v9p_A Replication protein E1; 96.6 0.0011 3.9E-08 51.3 3.1 22 8-29 128-149 (305)
295 2ff7_A Alpha-hemolysin translo 96.6 0.0011 3.8E-08 49.8 3.0 23 8-30 37-59 (247)
296 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.4E-08 47.4 3.3 21 8-28 2-22 (205)
297 2eyu_A Twitching motility prot 96.6 0.0011 3.8E-08 50.2 3.0 22 8-29 27-48 (261)
298 1mv5_A LMRA, multidrug resista 96.6 0.0013 4.4E-08 49.3 3.3 23 8-30 30-52 (243)
299 1np6_A Molybdopterin-guanine d 96.6 0.0013 4.3E-08 46.8 3.0 23 7-29 7-29 (174)
300 2olj_A Amino acid ABC transpor 96.6 0.0012 4E-08 50.2 3.0 23 8-30 52-74 (263)
301 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4E-08 47.8 2.9 22 7-28 2-23 (204)
302 1nks_A Adenylate kinase; therm 96.6 0.0011 3.8E-08 47.3 2.8 21 8-28 3-23 (194)
303 1ji0_A ABC transporter; ATP bi 96.6 0.0012 4.1E-08 49.4 3.0 23 8-30 34-56 (240)
304 1uj2_A Uridine-cytidine kinase 96.6 0.0015 5E-08 49.2 3.5 27 2-28 18-44 (252)
305 2rhm_A Putative kinase; P-loop 96.6 0.0015 5E-08 46.7 3.3 23 6-28 5-27 (193)
306 1vpl_A ABC transporter, ATP-bi 96.6 0.0013 4.3E-08 49.8 3.0 23 8-30 43-65 (256)
307 1kht_A Adenylate kinase; phosp 96.6 0.0015 5E-08 46.6 3.3 22 7-28 4-25 (192)
308 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0013 4.4E-08 49.5 3.1 22 8-29 31-52 (250)
309 2qi9_C Vitamin B12 import ATP- 96.6 0.0013 4.4E-08 49.6 3.0 23 8-30 28-50 (249)
310 2ehv_A Hypothetical protein PH 96.6 0.0013 4.5E-08 49.0 3.1 20 8-27 32-51 (251)
311 2ghi_A Transport protein; mult 96.6 0.0013 4.3E-08 49.9 3.0 22 8-29 48-69 (260)
312 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.3E-08 48.2 2.9 22 7-28 1-22 (214)
313 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.7E-08 46.4 3.5 23 6-28 3-25 (196)
314 3iij_A Coilin-interacting nucl 96.5 0.0016 5.5E-08 46.1 3.3 23 6-28 11-33 (180)
315 1aky_A Adenylate kinase; ATP:A 96.5 0.0015 5.3E-08 47.9 3.3 23 6-28 4-26 (220)
316 1jjv_A Dephospho-COA kinase; P 96.5 0.0017 6E-08 47.0 3.6 22 7-28 3-24 (206)
317 2ixe_A Antigen peptide transpo 96.5 0.0013 4.6E-08 50.1 3.0 23 8-30 47-69 (271)
318 3b85_A Phosphate starvation-in 96.5 0.00098 3.4E-08 48.8 2.2 22 8-29 24-45 (208)
319 2zu0_C Probable ATP-dependent 96.5 0.0014 4.9E-08 49.8 3.1 22 8-29 48-69 (267)
320 1gvn_B Zeta; postsegregational 96.5 0.0018 6.1E-08 49.8 3.7 25 4-28 31-55 (287)
321 1u0l_A Probable GTPase ENGC; p 96.5 0.0017 5.8E-08 50.3 3.6 23 8-30 171-193 (301)
322 2plr_A DTMP kinase, probable t 96.5 0.0018 6.1E-08 47.0 3.5 23 6-28 4-26 (213)
323 2ihy_A ABC transporter, ATP-bi 96.5 0.0014 4.9E-08 50.2 3.0 23 8-30 49-71 (279)
324 2nq2_C Hypothetical ABC transp 96.5 0.0015 5.1E-08 49.3 3.0 23 8-30 33-55 (253)
325 4a74_A DNA repair and recombin 96.5 0.0013 4.5E-08 48.3 2.7 23 8-30 27-49 (231)
326 3trf_A Shikimate kinase, SK; a 96.5 0.0017 5.9E-08 46.1 3.2 22 7-28 6-27 (185)
327 1zd8_A GTP:AMP phosphotransfer 96.5 0.0015 5.2E-08 48.2 3.0 24 5-28 6-29 (227)
328 2x8a_A Nuclear valosin-contain 96.5 0.0015 5.2E-08 49.8 3.0 22 8-29 46-67 (274)
329 2wwf_A Thymidilate kinase, put 96.5 0.0019 6.5E-08 46.9 3.4 24 5-28 9-32 (212)
330 1vht_A Dephospho-COA kinase; s 96.5 0.0022 7.4E-08 47.0 3.7 23 6-28 4-26 (218)
331 3aez_A Pantothenate kinase; tr 96.5 0.0022 7.7E-08 49.9 3.9 25 5-29 89-113 (312)
332 2yz2_A Putative ABC transporte 96.5 0.0016 5.5E-08 49.5 3.0 23 8-30 35-57 (266)
333 3be4_A Adenylate kinase; malar 96.4 0.0017 5.7E-08 47.7 3.0 24 5-28 4-27 (217)
334 2jeo_A Uridine-cytidine kinase 96.4 0.0021 7.1E-08 48.1 3.5 24 5-28 24-47 (245)
335 2pt5_A Shikimate kinase, SK; a 96.4 0.0021 7.1E-08 44.9 3.3 21 8-28 2-22 (168)
336 1zak_A Adenylate kinase; ATP:A 96.4 0.0015 5.2E-08 48.0 2.6 24 5-28 4-27 (222)
337 1odf_A YGR205W, hypothetical 3 96.4 0.0025 8.4E-08 49.1 3.9 25 4-28 29-53 (290)
338 1rz3_A Hypothetical protein rb 96.4 0.0025 8.4E-08 46.2 3.7 25 4-28 20-44 (201)
339 1via_A Shikimate kinase; struc 96.4 0.0018 6.1E-08 45.7 2.9 21 8-28 6-26 (175)
340 2xb4_A Adenylate kinase; ATP-b 96.4 0.0021 7.2E-08 47.4 3.3 22 7-28 1-22 (223)
341 3lnc_A Guanylate kinase, GMP k 96.4 0.0013 4.3E-08 48.8 2.0 22 8-29 29-51 (231)
342 2pjz_A Hypothetical protein ST 96.4 0.0021 7.3E-08 48.8 3.3 23 8-30 32-54 (263)
343 1jbk_A CLPB protein; beta barr 96.4 0.0021 7E-08 45.5 3.0 23 7-29 44-66 (195)
344 1ixz_A ATP-dependent metallopr 96.4 0.0019 6.6E-08 48.5 3.0 22 8-29 51-72 (254)
345 3tqc_A Pantothenate kinase; bi 96.4 0.0027 9.3E-08 49.6 3.9 25 4-28 90-114 (321)
346 2qt1_A Nicotinamide riboside k 96.4 0.0028 9.5E-08 46.0 3.7 24 6-29 21-44 (207)
347 1lw7_A Transcriptional regulat 96.4 0.0016 5.4E-08 51.8 2.5 24 6-29 170-193 (365)
348 2c95_A Adenylate kinase 1; tra 96.3 0.0022 7.6E-08 45.9 3.1 23 6-28 9-31 (196)
349 3umf_A Adenylate kinase; rossm 96.3 0.0024 8.1E-08 47.0 3.2 20 9-28 32-51 (217)
350 2kjq_A DNAA-related protein; s 96.3 0.0014 4.9E-08 45.2 1.9 23 8-30 38-60 (149)
351 1uf9_A TT1252 protein; P-loop, 96.3 0.0027 9.1E-08 45.7 3.4 25 5-29 7-31 (203)
352 2vli_A Antibiotic resistance p 96.3 0.0017 5.7E-08 46.0 2.2 24 5-28 4-27 (183)
353 2f1r_A Molybdopterin-guanine d 96.3 0.00095 3.2E-08 47.3 0.9 22 8-29 4-25 (171)
354 3jvv_A Twitching mobility prot 96.3 0.0022 7.5E-08 50.9 3.0 22 8-29 125-146 (356)
355 3nh6_A ATP-binding cassette SU 96.3 0.0015 5.1E-08 50.7 1.9 22 8-29 82-103 (306)
356 1ak2_A Adenylate kinase isoenz 96.3 0.003 1E-07 46.8 3.4 23 6-28 16-38 (233)
357 2p5t_B PEZT; postsegregational 96.2 0.002 7E-08 48.4 2.5 24 5-28 31-54 (253)
358 3tui_C Methionine import ATP-b 96.2 0.0026 8.7E-08 50.6 3.1 23 8-30 56-78 (366)
359 2yvu_A Probable adenylyl-sulfa 96.2 0.0039 1.4E-07 44.3 3.9 24 5-28 12-35 (186)
360 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0023 7.7E-08 50.8 2.8 23 8-30 32-54 (359)
361 1xjc_A MOBB protein homolog; s 96.2 0.0028 9.6E-08 44.7 3.0 22 7-28 5-26 (169)
362 2bbs_A Cystic fibrosis transme 96.2 0.0022 7.7E-08 49.3 2.7 22 8-29 66-87 (290)
363 2pbr_A DTMP kinase, thymidylat 96.2 0.003 1E-07 45.1 3.2 21 8-28 2-22 (195)
364 2ze6_A Isopentenyl transferase 96.2 0.0026 9E-08 47.9 3.0 21 8-28 3-23 (253)
365 1z47_A CYSA, putative ABC-tran 96.2 0.0027 9.2E-08 50.3 3.1 23 8-30 43-65 (355)
366 2bwj_A Adenylate kinase 5; pho 96.2 0.0025 8.6E-08 45.7 2.7 23 6-28 12-34 (199)
367 2z0h_A DTMP kinase, thymidylat 96.2 0.0028 9.6E-08 45.4 3.0 22 8-29 2-23 (197)
368 4e22_A Cytidylate kinase; P-lo 96.2 0.0036 1.2E-07 47.0 3.6 21 7-27 28-48 (252)
369 1iy2_A ATP-dependent metallopr 96.2 0.0028 9.5E-08 48.3 3.0 22 8-29 75-96 (278)
370 1rj9_A FTSY, signal recognitio 96.2 0.0027 9.3E-08 49.2 2.9 23 6-28 102-124 (304)
371 3rlf_A Maltose/maltodextrin im 96.2 0.0029 9.9E-08 50.6 3.1 23 8-30 31-53 (381)
372 2yyz_A Sugar ABC transporter, 96.2 0.0029 9.8E-08 50.2 3.1 23 8-30 31-53 (359)
373 2it1_A 362AA long hypothetical 96.2 0.003 1E-07 50.2 3.1 23 8-30 31-53 (362)
374 1e6c_A Shikimate kinase; phosp 96.2 0.0032 1.1E-07 44.1 3.0 21 8-28 4-24 (173)
375 1in4_A RUVB, holliday junction 96.1 0.0028 9.7E-08 49.7 3.0 22 8-29 53-74 (334)
376 2f6r_A COA synthase, bifunctio 96.1 0.004 1.4E-07 47.7 3.6 25 4-28 73-97 (281)
377 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0028 9.6E-08 49.7 2.8 23 8-30 173-195 (330)
378 3b9q_A Chloroplast SRP recepto 96.1 0.0032 1.1E-07 48.8 3.0 22 7-28 101-122 (302)
379 1sq5_A Pantothenate kinase; P- 96.1 0.0037 1.3E-07 48.5 3.5 25 5-29 79-103 (308)
380 2iyv_A Shikimate kinase, SK; t 96.1 0.0033 1.1E-07 44.6 3.0 21 8-28 4-24 (184)
381 1lv7_A FTSH; alpha/beta domain 96.1 0.0033 1.1E-07 47.3 3.0 23 7-29 46-68 (257)
382 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.004 1.4E-07 47.0 3.5 23 6-28 4-26 (260)
383 1v43_A Sugar-binding transport 96.1 0.0033 1.1E-07 50.1 3.1 23 8-30 39-61 (372)
384 2ewv_A Twitching motility prot 96.1 0.0029 1E-07 50.5 2.9 22 8-29 138-159 (372)
385 1g29_1 MALK, maltose transport 96.1 0.0032 1.1E-07 50.2 3.1 23 8-30 31-53 (372)
386 2gza_A Type IV secretion syste 96.1 0.0029 9.8E-08 50.3 2.8 23 8-30 177-199 (361)
387 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0033 1.1E-07 46.2 2.9 22 8-29 25-46 (235)
388 2grj_A Dephospho-COA kinase; T 96.1 0.0048 1.6E-07 44.5 3.7 26 4-29 10-35 (192)
389 3r20_A Cytidylate kinase; stru 96.0 0.0042 1.4E-07 46.2 3.2 24 5-28 8-31 (233)
390 1gtv_A TMK, thymidylate kinase 96.0 0.0012 4.1E-08 48.1 0.3 21 8-28 2-22 (214)
391 2p65_A Hypothetical protein PF 96.0 0.0031 1E-07 44.5 2.4 24 6-29 43-66 (187)
392 4eaq_A DTMP kinase, thymidylat 96.0 0.0058 2E-07 45.3 4.0 25 5-29 25-49 (229)
393 3bos_A Putative DNA replicatio 96.0 0.0038 1.3E-07 45.9 2.9 24 6-29 52-75 (242)
394 1p9r_A General secretion pathw 96.0 0.0037 1.3E-07 50.7 3.0 22 8-29 169-190 (418)
395 2vp4_A Deoxynucleoside kinase; 96.0 0.0031 1.1E-07 46.7 2.4 24 6-29 20-43 (230)
396 2pez_A Bifunctional 3'-phospho 96.0 0.0042 1.5E-07 43.9 3.0 23 6-28 5-27 (179)
397 2w58_A DNAI, primosome compone 96.0 0.0041 1.4E-07 44.8 2.9 23 7-29 55-77 (202)
398 1zuh_A Shikimate kinase; alpha 95.9 0.0053 1.8E-07 42.9 3.3 21 8-28 9-29 (168)
399 3e70_C DPA, signal recognition 95.9 0.0059 2E-07 47.8 3.8 91 56-169 214-310 (328)
400 3gmt_A Adenylate kinase; ssgci 95.9 0.0054 1.8E-07 45.5 3.4 26 3-28 5-30 (230)
401 3d31_A Sulfate/molybdate ABC t 95.9 0.0027 9.3E-08 50.2 1.8 23 8-30 28-50 (348)
402 2oap_1 GSPE-2, type II secreti 95.9 0.0042 1.4E-07 51.7 2.9 23 8-30 262-284 (511)
403 3gd7_A Fusion complex of cysti 95.9 0.0043 1.5E-07 49.8 2.8 22 8-29 49-70 (390)
404 2cvh_A DNA repair and recombin 95.8 0.005 1.7E-07 44.8 2.9 21 8-28 22-42 (220)
405 1m7g_A Adenylylsulfate kinase; 95.8 0.0051 1.7E-07 44.8 2.9 23 6-28 25-47 (211)
406 1a7j_A Phosphoribulokinase; tr 95.8 0.0028 9.5E-08 48.8 1.6 27 1-28 1-27 (290)
407 1tue_A Replication protein E1; 95.8 0.0038 1.3E-07 45.5 2.2 21 8-28 60-80 (212)
408 1n0w_A DNA repair protein RAD5 95.8 0.0052 1.8E-07 45.5 3.0 22 8-29 26-47 (243)
409 1cr0_A DNA primase/helicase; R 95.8 0.0044 1.5E-07 47.6 2.7 22 8-29 37-58 (296)
410 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.004 1.4E-07 51.1 2.5 23 8-30 140-162 (460)
411 3kta_A Chromosome segregation 95.8 0.0055 1.9E-07 43.3 2.8 21 8-28 28-48 (182)
412 3b9p_A CG5977-PA, isoform A; A 95.8 0.0054 1.9E-07 47.0 3.0 24 6-29 54-77 (297)
413 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0059 2E-07 45.8 3.0 22 7-28 40-61 (262)
414 1njg_A DNA polymerase III subu 95.7 0.006 2.1E-07 44.7 3.0 21 8-28 47-67 (250)
415 3t15_A Ribulose bisphosphate c 95.7 0.0067 2.3E-07 46.7 3.4 24 6-29 36-59 (293)
416 2chg_A Replication factor C sm 95.7 0.006 2.1E-07 44.1 2.9 22 8-29 40-61 (226)
417 3h4m_A Proteasome-activating n 95.7 0.0058 2E-07 46.5 2.9 24 6-29 51-74 (285)
418 1oxx_K GLCV, glucose, ABC tran 95.7 0.0027 9.2E-08 50.3 1.1 23 8-30 33-55 (353)
419 3nwj_A ATSK2; P loop, shikimat 95.7 0.0058 2E-07 46.0 2.8 22 7-28 49-70 (250)
420 1ltq_A Polynucleotide kinase; 95.7 0.0061 2.1E-07 46.9 3.0 22 7-28 3-24 (301)
421 2obl_A ESCN; ATPase, hydrolase 95.7 0.0059 2E-07 48.2 2.9 23 8-30 73-95 (347)
422 3cf0_A Transitional endoplasmi 95.7 0.006 2.1E-07 47.1 2.9 23 7-29 50-72 (301)
423 2og2_A Putative signal recogni 95.7 0.0098 3.4E-07 47.2 4.1 22 7-28 158-179 (359)
424 4ido_A Atlastin-1; GTPase, GTP 95.6 0.022 7.4E-07 46.5 6.1 21 7-27 68-88 (457)
425 1svm_A Large T antigen; AAA+ f 95.6 0.0063 2.1E-07 48.6 2.9 22 7-28 170-191 (377)
426 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.032 1.1E-06 44.3 6.9 19 9-27 26-44 (365)
427 3ake_A Cytidylate kinase; CMP 95.6 0.01 3.5E-07 42.8 3.6 21 8-28 4-24 (208)
428 2yhs_A FTSY, cell division pro 95.5 0.01 3.5E-07 49.0 3.9 22 7-28 294-315 (503)
429 3syl_A Protein CBBX; photosynt 95.5 0.0088 3E-07 46.0 3.4 23 6-28 67-89 (309)
430 1nij_A Hypothetical protein YJ 95.5 0.0049 1.7E-07 48.0 1.8 24 7-30 5-28 (318)
431 1l8q_A Chromosomal replication 95.5 0.0076 2.6E-07 46.9 2.9 23 7-29 38-60 (324)
432 1d2n_A N-ethylmaleimide-sensit 95.5 0.013 4.3E-07 44.4 4.1 26 4-29 62-87 (272)
433 3crm_A TRNA delta(2)-isopenten 95.4 0.011 3.9E-07 46.1 3.7 22 7-28 6-27 (323)
434 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.01 3.5E-07 40.8 3.1 19 9-27 26-44 (149)
435 3zvl_A Bifunctional polynucleo 95.4 0.012 4.2E-07 47.6 3.9 25 5-29 257-281 (416)
436 1ofh_A ATP-dependent HSL prote 95.4 0.0093 3.2E-07 45.8 3.0 24 6-29 50-73 (310)
437 3euj_A Chromosome partition pr 95.4 0.009 3.1E-07 49.2 3.0 21 8-28 31-51 (483)
438 4b4t_K 26S protease regulatory 95.3 0.0095 3.2E-07 48.4 3.1 23 7-29 207-229 (428)
439 2dpy_A FLII, flagellum-specifi 95.3 0.009 3.1E-07 48.7 2.9 23 8-30 159-181 (438)
440 3co5_A Putative two-component 95.3 0.0049 1.7E-07 42.0 1.2 23 7-29 28-50 (143)
441 1nlf_A Regulatory protein REPA 95.3 0.0085 2.9E-07 45.6 2.7 21 8-28 32-52 (279)
442 2qmh_A HPR kinase/phosphorylas 95.3 0.01 3.6E-07 42.9 2.8 24 7-30 35-58 (205)
443 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.0099 3.4E-07 46.4 3.0 23 7-29 46-68 (322)
444 3ozx_A RNAse L inhibitor; ATP 95.3 0.0096 3.3E-07 49.9 3.0 23 8-30 27-49 (538)
445 3b60_A Lipid A export ATP-bind 95.3 0.0093 3.2E-07 50.4 3.0 23 8-30 371-393 (582)
446 4fcw_A Chaperone protein CLPB; 95.3 0.01 3.5E-07 45.7 3.0 22 8-29 49-70 (311)
447 1azs_C GS-alpha; complex (lyas 95.3 0.012 4.1E-07 47.4 3.4 23 4-26 38-60 (402)
448 4b4t_M 26S protease regulatory 95.2 0.011 3.9E-07 48.0 3.2 24 6-29 215-238 (434)
449 3b5x_A Lipid A export ATP-bind 95.2 0.011 3.7E-07 50.0 3.3 23 8-30 371-393 (582)
450 1yqt_A RNAse L inhibitor; ATP- 95.2 0.015 5.3E-07 48.6 4.1 23 8-30 49-71 (538)
451 1q3t_A Cytidylate kinase; nucl 95.2 0.013 4.5E-07 43.4 3.4 24 5-28 15-38 (236)
452 3ld9_A DTMP kinase, thymidylat 95.2 0.015 5.1E-07 42.9 3.6 28 1-28 16-43 (223)
453 2ga8_A Hypothetical 39.9 kDa p 95.2 0.017 5.7E-07 45.7 4.0 24 5-28 23-46 (359)
454 2dr3_A UPF0273 protein PH0284; 95.2 0.011 3.7E-07 43.8 2.8 21 8-28 25-45 (247)
455 2qby_A CDC6 homolog 1, cell di 95.2 0.0097 3.3E-07 47.0 2.7 24 6-29 45-68 (386)
456 1sxj_E Activator 1 40 kDa subu 95.2 0.0087 3E-07 47.0 2.4 20 9-28 39-58 (354)
457 4b4t_L 26S protease subunit RP 95.2 0.011 3.8E-07 48.1 3.0 24 6-29 215-238 (437)
458 1fnn_A CDC6P, cell division co 95.2 0.011 3.8E-07 46.8 3.0 23 8-30 46-68 (389)
459 1sxj_C Activator 1 40 kDa subu 95.2 0.011 3.8E-07 46.3 2.9 22 8-29 48-69 (340)
460 3eie_A Vacuolar protein sortin 95.1 0.013 4.3E-07 45.7 3.2 23 7-29 52-74 (322)
461 3j16_B RLI1P; ribosome recycli 95.1 0.012 4E-07 50.1 3.1 23 8-30 105-127 (608)
462 4b4t_J 26S protease regulatory 95.0 0.013 4.5E-07 47.1 3.0 23 7-29 183-205 (405)
463 2r62_A Cell division protease 95.0 0.0059 2E-07 46.1 0.9 22 8-29 46-67 (268)
464 1sxj_D Activator 1 41 kDa subu 95.0 0.013 4.5E-07 45.8 2.9 22 8-29 60-81 (353)
465 1pzn_A RAD51, DNA repair and r 95.0 0.012 4.1E-07 46.5 2.7 23 8-30 133-155 (349)
466 2yl4_A ATP-binding cassette SU 95.0 0.0098 3.4E-07 50.4 2.2 23 8-30 372-394 (595)
467 1c9k_A COBU, adenosylcobinamid 95.0 0.016 5.4E-07 41.3 3.0 21 9-29 2-22 (180)
468 3qf4_B Uncharacterized ABC tra 95.0 0.011 3.6E-07 50.3 2.4 23 8-30 383-405 (598)
469 2px0_A Flagellar biosynthesis 95.0 0.013 4.3E-07 45.3 2.7 21 7-27 106-126 (296)
470 3tqf_A HPR(Ser) kinase; transf 94.9 0.017 5.9E-07 40.8 3.0 24 7-30 17-40 (181)
471 2bjv_A PSP operon transcriptio 94.9 0.016 5.3E-07 43.7 3.0 24 7-30 30-53 (265)
472 4a82_A Cystic fibrosis transme 94.9 0.009 3.1E-07 50.5 1.9 22 8-29 369-390 (578)
473 3ozx_A RNAse L inhibitor; ATP 94.9 0.014 4.9E-07 48.8 3.0 23 8-30 296-318 (538)
474 2qp9_X Vacuolar protein sortin 94.9 0.015 5E-07 46.0 3.0 22 8-29 86-107 (355)
475 1p5z_B DCK, deoxycytidine kina 94.9 0.012 4.1E-07 44.4 2.3 25 5-29 23-47 (263)
476 2v1u_A Cell division control p 94.9 0.013 4.3E-07 46.4 2.5 24 6-29 44-67 (387)
477 1vma_A Cell division protein F 94.9 0.025 8.6E-07 43.8 4.1 22 7-28 105-126 (306)
478 2qgz_A Helicase loader, putati 94.8 0.017 6E-07 44.7 3.2 24 6-29 152-175 (308)
479 3u61_B DNA polymerase accessor 94.8 0.045 1.5E-06 42.4 5.5 21 9-29 51-71 (324)
480 1yqt_A RNAse L inhibitor; ATP- 94.8 0.018 6.1E-07 48.3 3.4 23 8-30 314-336 (538)
481 3uk6_A RUVB-like 2; hexameric 94.8 0.014 4.8E-07 46.1 2.7 22 8-29 72-93 (368)
482 3qf4_A ABC transporter, ATP-bi 94.8 0.012 4.1E-07 49.8 2.3 22 8-29 371-392 (587)
483 3bk7_A ABC transporter ATP-bin 94.8 0.023 8E-07 48.3 4.0 23 8-30 119-141 (607)
484 2ocp_A DGK, deoxyguanosine kin 94.8 0.02 6.8E-07 42.5 3.2 24 6-29 2-25 (241)
485 3bk7_A ABC transporter ATP-bin 94.8 0.017 5.8E-07 49.1 3.1 23 8-30 384-406 (607)
486 3pfi_A Holliday junction ATP-d 94.8 0.017 5.8E-07 45.1 2.9 23 7-29 56-78 (338)
487 3d3q_A TRNA delta(2)-isopenten 94.8 0.021 7.1E-07 44.9 3.4 23 7-29 8-30 (340)
488 4b4t_I 26S protease regulatory 94.7 0.018 6E-07 46.7 3.0 23 7-29 217-239 (437)
489 2dhr_A FTSH; AAA+ protein, hex 94.7 0.016 5.5E-07 48.0 2.9 22 8-29 66-87 (499)
490 2ce7_A Cell division protein F 94.7 0.017 5.8E-07 47.6 3.0 23 7-29 50-72 (476)
491 3d8b_A Fidgetin-like protein 1 94.7 0.017 5.9E-07 45.6 3.0 24 6-29 117-140 (357)
492 3m6a_A ATP-dependent protease 94.7 0.016 5.6E-07 48.5 2.9 21 8-28 110-130 (543)
493 3pxg_A Negative regulator of g 94.7 0.016 5.5E-07 47.6 2.8 24 6-29 201-224 (468)
494 2h92_A Cytidylate kinase; ross 94.7 0.018 6.2E-07 41.9 2.8 23 6-28 3-25 (219)
495 3hws_A ATP-dependent CLP prote 94.7 0.018 6.3E-07 45.5 3.0 24 6-29 51-74 (363)
496 1um8_A ATP-dependent CLP prote 94.7 0.019 6.3E-07 45.7 3.0 23 7-29 73-95 (376)
497 2z4s_A Chromosomal replication 94.6 0.018 6.1E-07 47.0 2.9 23 7-29 131-153 (440)
498 3j16_B RLI1P; ribosome recycli 94.6 0.02 6.7E-07 48.7 3.2 22 9-30 381-402 (608)
499 2qen_A Walker-type ATPase; unk 94.6 0.02 6.8E-07 44.6 3.0 22 8-29 33-54 (350)
500 3foz_A TRNA delta(2)-isopenten 94.6 0.029 1E-06 43.4 3.8 23 7-29 11-33 (316)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.1e-41 Score=253.33 Aligned_cols=166 Identities=28% Similarity=0.484 Sum_probs=141.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+.+||+|+|++|||||||+++|..+.|...+.+|.+. ...+.+.+++..+.++||||+|+++|.++++.+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 46789999999999999999999999999999999874 45667788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++++|+.+ ..|+..+.... +++|++|||||+|+.+.+. ++.++++++++.+++ +|+++||+
T Consensus 91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk 158 (216)
T 4dkx_A 91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK 158 (216)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence 99999999999999 88888887655 7899999999999987665 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 028239 162 TQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~ 181 (211)
+|.||+++|+.|++.+....
T Consensus 159 tg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TTBSHHHHHHHHHHHC----
T ss_pred CCcCHHHHHHHHHHHHHhhh
Confidence 99999999999999986543
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-40 Score=247.65 Aligned_cols=209 Identities=89% Similarity=1.348 Sum_probs=155.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|+..+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 67778999999999999999999999999998888888888777777888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+++|||+++++++..+...|+..+....++.|+++|+||+|+...+..... ..+.+..+++.++++.++..+|+++||
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999845899999888789999999999999765421000 112357888899999998669999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchhhHHHHhhhcccCCcccccccccccccCC
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 211 (211)
++|.|++++|+++++.+.+...+++....+++++.+.|+++.+-+-|+|+|
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 212 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIASIVCGGCTAA 212 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEehHhhcccccC
Confidence 999999999999999999988777766666677788999996666677664
No 3
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=3.3e-36 Score=220.33 Aligned_cols=185 Identities=32% Similarity=0.558 Sum_probs=152.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
++.+||+++|++|+|||||+++|.++.+...+.++..+.+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999998888899888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+ ..|...+.... ++.|+++|+||+|+.... +..+++..+++..+. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 78888887754 589999999999997543 678888999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhhHHHHhhh-cccCCccccc
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRRKEMMARKK-RHRRSSCSIA 201 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~-~~~~~~c~~~ 201 (211)
+|.|++++|+++.+.+.....+......++ ++++.+|.++
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 999999999999999987655554433333 3334556553
No 4
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.8e-35 Score=215.30 Aligned_cols=170 Identities=31% Similarity=0.441 Sum_probs=152.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|.+.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 77888999999999999999999999999998999999888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
+++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +|+++
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES 148 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence 9999999999999999 78888876654 5899999999999976654 888999999999998 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCch
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
||++|.|++++|+++++.+.....
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC--
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999977543
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.3e-35 Score=216.39 Aligned_cols=172 Identities=42% Similarity=0.809 Sum_probs=155.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
..+.+||+++|.+|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999999999889999998888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
+|||++++.++..+...|...+....++.|+++|+||+|+.... .+.+..+++.++++.++...|+++||++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999997678999998888899999999999997532 1237889999999999984499999999
Q ss_pred CCCHHHHHHHHHHHHcCCch
Q 028239 163 QQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~~~ 182 (211)
|.|++++|+++++.+...+.
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999987654
No 6
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=220.17 Aligned_cols=170 Identities=30% Similarity=0.476 Sum_probs=145.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|...+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 55667899999999999999999999999998888888888777777777888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
+++|||+++++++..+ ..|+..+.... +++|+++|+||+|+...+. +...++..+++..+. +|+++
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999999 78888887654 5899999999999987654 788899999999998 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCch
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
||++|.|++++|++|.+.+.+...
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999976543
No 7
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=220.01 Aligned_cols=165 Identities=32% Similarity=0.554 Sum_probs=150.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+|+|++|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 45789999999999999999999999998888899888887888889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++..+. +++++||+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 159 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence 9999999999998 88888887765 4899999999999977554 778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|++|++.+.+.
T Consensus 160 ~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999764
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-35 Score=214.75 Aligned_cols=177 Identities=51% Similarity=0.970 Sum_probs=153.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34679999999999999999999999999888888888777777888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||+++++++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++.++++..+..+|+++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 99999999999998448999998877899999999999997642110 1111223478889999999998768999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|+++++.++.
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=5.8e-36 Score=217.87 Aligned_cols=179 Identities=79% Similarity=1.273 Sum_probs=135.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|++.+.+||+++|++|+|||||++++.++.+...+.+|.+..+...+.+++..+.+++||+||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67788999999999999999999999999988888888877666566677778889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+...........+..+++.++++.++..+|+++||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999999984479999988777899999999999976543111111223357788899999998669999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|+++++.+++
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998865
No 10
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=5.7e-35 Score=216.20 Aligned_cols=178 Identities=52% Similarity=0.870 Sum_probs=144.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
..+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999998888888888888788888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++..+++.++..+|+++||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999998448999998887899999999999997632100 0001123477888999999998779999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 028239 161 KTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~ 180 (211)
++|.|++++|+++++.+.+.
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988643
No 11
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=4.3e-35 Score=219.20 Aligned_cols=180 Identities=36% Similarity=0.627 Sum_probs=152.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
...+||+|+|.+|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 45799999999999999999999999999999999988888788888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||+++++++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++.++++..+..+|+++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 9999999999994489999999888899999999999997631100 00111234888999999999997789999999
Q ss_pred CCCC-HHHHHHHHHHHHcCCchh
Q 028239 162 TQQN-VKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 162 ~~~~-v~~lf~~l~~~~~~~~~~ 183 (211)
+|.| |+++|+++++.+......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC----
T ss_pred CCcccHHHHHHHHHHHHhccCcC
Confidence 9998 999999999999876543
No 12
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.6e-35 Score=213.11 Aligned_cols=177 Identities=38% Similarity=0.711 Sum_probs=151.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.+.+||+++|++|+|||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.|...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46789999999999999999999999999888888888777777788888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||+++++++..+...|+..+....++.|+++|+||+|+....... ......+.++.+++.++++.++..+|+++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999998678988888877899999999999997532100 0011123478889999999998669999999
Q ss_pred C-CCCCHHHHHHHHHHHHcC
Q 028239 161 K-TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~-~~~~v~~lf~~l~~~~~~ 179 (211)
+ ++.|++++|+.+++.++.
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998864
No 13
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=213.39 Aligned_cols=165 Identities=25% Similarity=0.425 Sum_probs=143.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
++.+.+||+|+|.+|+|||||+++|+++.+...+.+|.+..+...+.+++..+.+++||+||++.+... ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 456789999999999999999999999999888999988887777888999999999999999988875 5688999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. ++.+++.++++..+. +|++
T Consensus 96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e 163 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE 163 (187)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence 999999999999998 78888887653 5899999999999976554 788899999999998 9999
Q ss_pred ecC-CCCCCHHHHHHHHHHHHcC
Q 028239 158 CSS-KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 158 ~sa-~~~~~v~~lf~~l~~~~~~ 179 (211)
+|| ++|.|++++|+.+++.+.+
T Consensus 164 ~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EeecCccccHHHHHHHHHHHHhh
Confidence 999 8999999999999998754
No 14
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.9e-34 Score=213.24 Aligned_cols=171 Identities=29% Similarity=0.581 Sum_probs=150.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45679999999999999999999999998887777775444 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||
T Consensus 85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSA 152 (206)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 78988887765 6899999999999987554 778888899999887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchhhH
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPRRKE 185 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~~~~ 185 (211)
++|.|++++|++|.+.+.+......
T Consensus 153 ~~g~gi~~l~~~l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIKESMSQQN 177 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999977655443
No 15
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.8e-34 Score=210.54 Aligned_cols=180 Identities=61% Similarity=1.019 Sum_probs=154.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 35799999999999999999999999998888888887777778889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++..+++..+..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 9999999999998447999998877899999999999997642110 11112234778888999999886699999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchh
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~ 183 (211)
+|.|++++|+++.+.+.+...+
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~ 184 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPV 184 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC-
T ss_pred CccCHHHHHHHHHHHHhccccc
Confidence 9999999999999999876544
No 16
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.4e-34 Score=210.04 Aligned_cols=166 Identities=20% Similarity=0.316 Sum_probs=141.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|+..+.+||+++|++|+|||||+++|.++.+.. +.+|.++.+...+.+++..+.+++||+||+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 677789999999999999999999999999876 67787777778888899999999999999987 457888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
+++|||+++++++..+ ..|+..+.... +++|+++|+||+|+.... .+.+..+++.++++..+..+|+
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999998 77765555432 589999999999995311 1237888899999888555999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++||++|.|++++|+++++.+....
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.2e-34 Score=209.84 Aligned_cols=165 Identities=34% Similarity=0.553 Sum_probs=149.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.+.+||+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34679999999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++.++. +|+++||
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 162 (183)
T 3kkq_A 95 IVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSA 162 (183)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEecc
Confidence 99999999999998 78887776532 6899999999999987554 888999999999996 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHcC
Q 028239 161 K-TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~-~~~~v~~lf~~l~~~~~~ 179 (211)
+ ++.|++++|+++.+.+.+
T Consensus 163 ~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 9 999999999999998754
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.6e-34 Score=210.13 Aligned_cols=164 Identities=24% Similarity=0.364 Sum_probs=142.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.+.+.+||+|+|++|+|||||+++|+++.+...+.+| ...+...+.+++..+.+++||++|++.+. +++.+|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 4567899999999999999999999999988888887 44556788899999999999999998876 77889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.... .+.+..+++.++++.++..+|+++|
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence 999999999999998 78999888764 589999999999995321 1237889999999999855999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~ 180 (211)
|++|.|++++|+++++.+.+.
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.6e-34 Score=205.52 Aligned_cols=166 Identities=31% Similarity=0.611 Sum_probs=139.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+.++.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 356789999999999999999999999998877777775444 4567778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++|
T Consensus 82 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 149 (170)
T 1z08_A 82 AILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTS 149 (170)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEec
Confidence 9999999999999998 78888877654 5899999999999977544 778889999999987 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~ 179 (211)
|++|.|++++|+++.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 20
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=215.04 Aligned_cols=178 Identities=42% Similarity=0.835 Sum_probs=133.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++|+|||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 35799999999999999999999999988888888887777788889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.++.+++.++++..+..+|+++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 9999999999998458999998877899999999999997653210 01112234778889999999987699999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 028239 162 TQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~ 181 (211)
+|.|++++|+++++.+.+.+
T Consensus 192 ~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 21
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=207.02 Aligned_cols=168 Identities=31% Similarity=0.554 Sum_probs=147.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.+..+||+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988777777765 44456778899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+...+. +...++..++...+. +++++||+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK 153 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 999999999999998 889999988878999999999999987654 778889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 028239 162 TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~ 182 (211)
+|.|++++|+++.+.+.....
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999865433
No 22
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.6e-34 Score=204.84 Aligned_cols=163 Identities=29% Similarity=0.548 Sum_probs=145.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888877777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999998 77877776642 5899999999999977554 7788889999988445999999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 028239 163 QQNVKAVFDTAIKVVL 178 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~ 178 (211)
|.|++++|+++.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998874
No 23
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-34 Score=213.35 Aligned_cols=176 Identities=38% Similarity=0.715 Sum_probs=150.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
...+||+++|++|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 56799999999999999999999999998888888887777777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.++.+++.++++.++..+|+++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999999999998668988888877899999999999997532100 00111234788889999999885599999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 028239 162 -TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 -~~~~v~~lf~~l~~~~~~ 179 (211)
++.|++++|+.+++.++.
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998763
No 24
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=210.51 Aligned_cols=180 Identities=47% Similarity=0.836 Sum_probs=148.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
....+||+++|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34578999999999999999999999998888888887777667788998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++..+++..+..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999998668888888877899999999999997642110 1111223477888899999988778999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCch
Q 028239 161 KTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++|.|++++|++|.+.+..+..
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876543
No 25
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=5e-34 Score=204.61 Aligned_cols=163 Identities=32% Similarity=0.566 Sum_probs=144.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+.+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999999888888888888777788899989999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||+++++++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++..+. +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 78888777665 3899999999999977554 778889999999987 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
|.|++++|+++.+.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 26
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-34 Score=213.15 Aligned_cols=167 Identities=26% Similarity=0.480 Sum_probs=146.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
....++|+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45679999999999999999999999998888888887777777788888899999999999999998888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... +..+++..+++.++. +++++|
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S 151 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETS 151 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEe
Confidence 99999999999988 66766665542 478999999999997632 677888889999887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCch
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
|++|.|++++|++|++.+.....
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSSSCE
T ss_pred cCCCCCHHHHHHHHHHHHhhhhc
Confidence 99999999999999998877643
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4.3e-34 Score=207.57 Aligned_cols=166 Identities=33% Similarity=0.537 Sum_probs=148.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+.+.++|+++|.+|+|||||+++|++..+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999999999889999988888788888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-hC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRR-FA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++.++..+ ..|+..+.. .. .+.|+++|+||+|+...+. +..+++..++...+. +++++||
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 153 (181)
T 2fn4_A 86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA 153 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 99999999999998 777777643 33 5899999999999977554 778888899988887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 028239 161 KTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~ 180 (211)
++|.|++++|++|.+.+.+.
T Consensus 154 ~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988643
No 28
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.6e-33 Score=208.66 Aligned_cols=176 Identities=48% Similarity=0.874 Sum_probs=152.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
...+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45789999999999999999999999988888888877776777889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+...|...+....++.|+++|+||+|+....... ......+.+..+++.++++..+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999998678888888877899999999999997652211 11112234778889999999987789999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
+|.|++++|++|.+.+++
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998754
No 29
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.8e-34 Score=209.29 Aligned_cols=164 Identities=29% Similarity=0.614 Sum_probs=117.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999888777667765444 456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++..+. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999998 78988887764 6899999999999976543 778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
+|.|++++|++|.+.+.+
T Consensus 154 ~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKA 171 (183)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999865
No 30
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=211.98 Aligned_cols=173 Identities=31% Similarity=0.533 Sum_probs=141.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
..+..+||+|+|++++|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 345679999999999999999999999998877777765444 4567788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+|+|||++++.+++.+ ..|+..+.... ++.|++||+||+|+...+. +..+++.++++..+. +|+++|
T Consensus 89 vilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 156 (223)
T 3cpj_B 89 ALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETS 156 (223)
T ss_dssp EEEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence 9999999999999998 88988887765 5899999999999976543 778888999999887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
|+++.|++++|++|++.+.+.....+.
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~~~~~~~ 183 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQKVSKHQM 183 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTCC-----
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999887666554
No 31
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=4.7e-34 Score=212.04 Aligned_cols=175 Identities=61% Similarity=1.032 Sum_probs=150.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
..+.+||+++|.+|+|||||+++|.++.+...+.++..+.+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 34679999999999999999999999999989999988888888888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
+|||++++.++..+...|+..+....++.|+++|+||+|+....... ..+...+.+..+++..+++..+..+++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 99999999999998448999998888899999999999997653211 1122233477888999999999878999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028239 161 KTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~ 177 (211)
++|.|++++|+++++.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998865
No 32
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.8e-34 Score=211.12 Aligned_cols=165 Identities=30% Similarity=0.554 Sum_probs=146.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
++.+||+++|++|+|||||+++|+++.+...+.+|.+. .....+.+++..+.+++||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 46799999999999999999999999988777777654 44567788998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++..+. +|+++||+
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 88988888765 5899999999999976543 778888899998887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|+++++.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.4e-33 Score=202.72 Aligned_cols=165 Identities=31% Similarity=0.553 Sum_probs=144.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
+.+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999999988877777765444 55677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 78888877664 6899999999999976543 677888899988887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|++|.+.+.+
T Consensus 151 ~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.4e-33 Score=202.57 Aligned_cols=165 Identities=36% Similarity=0.551 Sum_probs=145.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.++.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999998888777765 44456777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+...+. +..+++.++++..+. +++++||+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence 999999999999998 778888876667899999999999976543 678888999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
++.|++++|++|.+.+.+
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998864
No 35
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=207.21 Aligned_cols=168 Identities=30% Similarity=0.599 Sum_probs=148.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+||+|+|++|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4568999999999999999999999998887777765 444567788998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +...++.++++..+. +++++||+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence 99999999999998 78988887775 5899999999999987654 788889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchh
Q 028239 162 TQQNVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~~ 183 (211)
+|.|++++|++|.+.+.+....
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999765443
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.6e-33 Score=203.65 Aligned_cols=167 Identities=33% Similarity=0.557 Sum_probs=144.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
+.+.+||+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 34679999999999999999999999998877777765443 55677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 156 (181)
T 2efe_B 89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSA 156 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999999998 78888887765 6899999999999976554 778889999999887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 028239 161 KTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++|.|++++|++|.+.+...+
T Consensus 157 ~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 157 KTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SSCTTHHHHHHHHHHTCC---
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999886543
No 37
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-33 Score=207.65 Aligned_cols=165 Identities=31% Similarity=0.601 Sum_probs=142.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
..+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999998777777765443 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||
T Consensus 98 i~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 165 (191)
T 2a5j_A 98 LLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSA 165 (191)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887764 6899999999999976543 778889999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
+++.|++++|++|++.+.+
T Consensus 166 ~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 166 KTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2e-33 Score=203.66 Aligned_cols=165 Identities=33% Similarity=0.608 Sum_probs=146.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.++.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999999998888777776444 55677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA 159 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 88888887766 6899999999999976543 778888999999887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|+++++.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998864
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=204.54 Aligned_cols=164 Identities=26% Similarity=0.380 Sum_probs=131.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC--ccccccccccCCcEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED--YSRLRPLSYRGADIF 81 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~--~~~~~~~~~~~~d~~ 81 (211)
.+.+||+++|++|+|||||+++|.+..+...+..+..+.+...+.+++..+.+.+||+||++. +...+..+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988766555444455566778899889999999999987 555667788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
++|||++++.++..+ ..|...+.... ++.|+++|+||+|+...+. +..+++..++...+. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999998 78888777653 5899999999999987554 777888889988887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~ 179 (211)
|++|.|++++|++|.+.+..
T Consensus 150 a~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 40
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=211.77 Aligned_cols=166 Identities=31% Similarity=0.535 Sum_probs=140.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.++.+||+|+|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999998877777765444 56777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+..+++++||
T Consensus 106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeC
Confidence 999999999999998 78988888765 6899999999999977543 77888999999988768999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|++|++.+.+
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 41
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.9e-33 Score=204.48 Aligned_cols=165 Identities=31% Similarity=0.624 Sum_probs=146.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.+..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34679999999999999999999999998877777775444 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..++++++++..+. +++++||
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 166 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA 166 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999998 78988888765 6899999999999976543 677888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|++|.+.+.+
T Consensus 167 ~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.2e-34 Score=206.80 Aligned_cols=168 Identities=27% Similarity=0.440 Sum_probs=144.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+.+.+||+++|++|+|||||+++|.++.+...+.+|.+ +.....+.+++ ..+.+++||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 46789999999999999999999999888766666664 44556677776 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC---CCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA---PNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
+++|||++++.+++.+ ..|+..+.... .+.| +++|+||+|+.+.+. +..+++.++++..+. +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999998 78888887643 2455 899999999976543 778888999999987 999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCch
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++||++|.|++++|++|.+.+.+...
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999977643
No 43
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=208.37 Aligned_cols=166 Identities=31% Similarity=0.525 Sum_probs=145.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
|.+.+.+||+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 456678999999999999999999999999988888888887877788899999999999999988 6777888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
+++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 169 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC 169 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 77887777643 5899999999999977543 788889999999987 99999
Q ss_pred cCCCCC-CHHHHHHHHHHHHcC
Q 028239 159 SSKTQQ-NVKAVFDTAIKVVLQ 179 (211)
Q Consensus 159 sa~~~~-~v~~lf~~l~~~~~~ 179 (211)
||++|. |++++|++|++.+.+
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHHHh
Confidence 999999 999999999998854
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-33 Score=201.18 Aligned_cols=167 Identities=34% Similarity=0.623 Sum_probs=137.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
.++.+||+++|++|+|||||+++|.+..+. ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998874 45556665444 4456788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++..+. +++++|
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 154 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS 154 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999998 88888888766 5899999999999987553 778888899999987 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCc
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~ 181 (211)
|+++.|++++|+++.+.+.+..
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987643
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.5e-33 Score=202.24 Aligned_cols=161 Identities=24% Similarity=0.378 Sum_probs=121.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|++|+|||||+++|.+..+. ...++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876654 2334455556677788999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..++...+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 99999999998 77877776653 6899999999999987654 788889999999997 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 028239 164 QNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~ 179 (211)
.|++++|+++.+.+..
T Consensus 149 ~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 149 HNVQALFEGVVRQIRL 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998753
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.3e-33 Score=206.15 Aligned_cols=165 Identities=30% Similarity=0.525 Sum_probs=145.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
++.+||+|+|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988877777654 44566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +...++.++++..+. +++++||+
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 99999999999998 78888877664 6899999999999976543 777888899999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|+++.+.+.++
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.8e-33 Score=199.62 Aligned_cols=165 Identities=25% Similarity=0.537 Sum_probs=146.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
..+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998887777776544 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..+++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 88988888764 7899999999999986543 778888999999887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|+++.+.+.+
T Consensus 151 ~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 151 KNAININELFIEISRRIPS 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1e-33 Score=206.61 Aligned_cols=163 Identities=32% Similarity=0.567 Sum_probs=147.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+.+||+|+|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999999988888888888877888899889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++..+. +++++||++
T Consensus 97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 164 (187)
T 2a9k_A 97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKT 164 (187)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 78888777665 3899999999999977543 778888999999987 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
+.|++++|++|.+.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 165 RANVDKVFFDLMREIRA 181 (187)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998853
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.5e-33 Score=201.90 Aligned_cols=162 Identities=29% Similarity=0.582 Sum_probs=145.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+.+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888777778888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||++++.+++.+ ..|...+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999998 77777776654 5899999999999976543 778888899999887 999999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 028239 163 QQNVKAVFDTAIKVVL 178 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~ 178 (211)
|.|++++|+++.+.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998774
No 50
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-33 Score=200.26 Aligned_cols=166 Identities=31% Similarity=0.565 Sum_probs=144.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998877777765444 5667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... .+.+..+++.++++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78888887765 6899999999999976421 123778888899999887 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 028239 163 QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~ 179 (211)
|.|++++|+++.+.+.+
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999887643
No 51
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=209.99 Aligned_cols=165 Identities=31% Similarity=0.545 Sum_probs=136.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.++.+||+|+|++|+|||||+++|+++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 356799999999999999999999999887777777653 3456677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +...++.++++..+. +++++||
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA 169 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA 169 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887655 6899999999999976543 777888899999887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|++|++.+..
T Consensus 170 ~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILN 188 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.5e-33 Score=200.83 Aligned_cols=163 Identities=25% Similarity=0.392 Sum_probs=130.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccc-cccccccCCcEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSR-LRPLSYRGADIFVL 83 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 83 (211)
.+||+++|++|+|||||+++|.+..+...+.++. .+.+...+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999876554443333 455667778899999999999999998876 77778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCC--CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||+++++++..+ ..|+..+....+ +.|+++|+||+|+.+.+. +..+++.++++..+. +|+++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999999 788888877653 899999999999986554 888999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|+++++.+..+
T Consensus 150 ~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999987543
No 53
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=204.33 Aligned_cols=165 Identities=32% Similarity=0.530 Sum_probs=145.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999998877777765444 45677788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..+++..+. +++++||
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 169 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA 169 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887654 6899999999999976543 677888899998887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|++|.+.+.+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.3e-33 Score=200.27 Aligned_cols=166 Identities=36% Similarity=0.662 Sum_probs=140.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
..+.++|+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45689999999999999999999999998877777775444 56778889889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... +..+++.++++.....+++
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEE
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-----------cCHHHHHHHHHhcCCceEE
Confidence 999999999999998 78888776543 578999999999997322 6778888888855555999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++||++|.|++++|+++++.+.+.
T Consensus 152 ~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 152 ETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-33 Score=201.74 Aligned_cols=163 Identities=29% Similarity=0.525 Sum_probs=143.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+.+||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 56999999999999999999999999888888887777777778888889999999999999999888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +...++..+++..+. +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999988 77777666543 5899999999999976554 677788888888887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
+|.|++++|++|.+.+..
T Consensus 150 ~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 150 LNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TTBSHHHHHHHHHHTCCS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999987654
No 56
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-33 Score=208.16 Aligned_cols=164 Identities=25% Similarity=0.423 Sum_probs=136.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-ccccccccccCCc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLRPLSYRGAD 79 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d 79 (211)
....+||+|+|.+|+|||||+++|.+.. +...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+|
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3466999999999999999999999643 455555554555667788899999999999999876 4556677889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 80 IFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
++++|||+++..+|+.+ ..|...+.... +++|+++|+||+|+...+. +..++++.++...+. +|++
T Consensus 114 ~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e 181 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE 181 (211)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEE
Confidence 99999999999999998 78887776532 5899999999999976543 777888888888887 9999
Q ss_pred ecCCCCCCHHHHHHHHHHHHc
Q 028239 158 CSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+||++|.||+++|+++++.+.
T Consensus 182 ~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999874
No 57
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=206.86 Aligned_cols=172 Identities=32% Similarity=0.499 Sum_probs=136.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
...+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 345679999999999999999999999998777777766444 4667788988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... ....+.+..+++..+++..+. +|+++|
T Consensus 104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~S 177 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETS 177 (199)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEee
Confidence 9999999999999998 78988887765 5899999999999963210 001224778888999999987 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~ 179 (211)
|++|.|++++|++|++.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-33 Score=204.58 Aligned_cols=165 Identities=27% Similarity=0.539 Sum_probs=144.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4679999999999999999999999998777777776544 455667778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||+
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 168 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK 168 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 88988888765 5899999999999976443 778889999999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
++.|++++|++|.+.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTBSHHHHHHHHHHTCC--
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999987543
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.2e-32 Score=201.85 Aligned_cols=163 Identities=36% Similarity=0.572 Sum_probs=136.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
+.++|+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 56899999999999999999999999888888888877777888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||+++..++.++ ..|+..+.... .+.|+++|+||+|+.... +..+++.++++..+. +++++||++
T Consensus 100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 999999999998 88888877654 489999999999997632 677888999999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
+.|++++|++|.+.+.+.
T Consensus 167 ~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 167 RQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988653
No 60
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=4.6e-33 Score=200.16 Aligned_cols=163 Identities=33% Similarity=0.661 Sum_probs=138.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999998777777765444 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... +..+++.++++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999998 88888887765 689999999999994322 677888899999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
|.|++++|+++.+.+.++
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=8.5e-33 Score=205.22 Aligned_cols=169 Identities=31% Similarity=0.555 Sum_probs=143.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999998888777764 44456677788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... +..+++..++......+++
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~ 152 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYF 152 (207)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCCceEE
Confidence 999999999999998 78887776543 478999999999997432 6677888888844445999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCchh
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~~~ 183 (211)
++||++|.|++++|++|.+.+.+....
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALKQETE 179 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999765543
No 62
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=206.55 Aligned_cols=166 Identities=25% Similarity=0.401 Sum_probs=139.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-cccccccCCcEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-LRPLSYRGADIF 81 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~ 81 (211)
...+||+|+|++|+|||||+++|.+......+.+ +..+.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 4679999999999999999999976443222222 33455566778899999999999999988765 777788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
++|||++++.+|..+ ..|+..+.... ++.|+++|+||+|+...+. ++.++++++++..+. +|+++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999998 78888887655 4899999999999976554 788889999999887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCc
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~ 181 (211)
|++|.|++++|+++++.+....
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999986543
No 63
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.1e-33 Score=204.04 Aligned_cols=164 Identities=34% Similarity=0.578 Sum_probs=143.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee--EEEEECCe---------EEEEEEEeCCCCcCcccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVAVDGS---------IVNLGLWDTAGQEDYSRLRP 72 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~l~D~~G~~~~~~~~~ 72 (211)
++.+||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+.+++. .+.+.+||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999988877777765543 45555654 78899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI 150 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (211)
.+++.+|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY 157 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence 999999999999999999999998 78888887765 5899999999999976543 7778889999999
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+. +++++||+++.|++++|++|.+.+.+
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 87 99999999999999999999999864
No 64
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=206.34 Aligned_cols=166 Identities=31% Similarity=0.555 Sum_probs=138.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
....+||+|+|.+|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34678999999999999999999999988777777764 44456677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..++++++++.+...+++++||
T Consensus 103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeC
Confidence 999999999999998 88988888766 5899999999999976554 77888888988864459999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 028239 161 KTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~~~~ 179 (211)
++|.|++++|++|.+.+.+
T Consensus 172 ~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=6.1e-34 Score=211.35 Aligned_cols=171 Identities=26% Similarity=0.364 Sum_probs=112.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEECCe--EEEEEEEeCCCCcCcccccccccc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVF-DNFSANVAVDGS--IVNLGLWDTAGQEDYSRLRPLSYR 76 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~ 76 (211)
.....++|+|+|++|+|||||+++|.+. .+...+.+|.+ +.....+.+++. .+.+.+||+||++.+...+..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456789999999999999999999998 78778888876 555667778876 889999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC----CCcEEEEeeCCCccc-CccccccccCCccccHHHHHHHHHHhC
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRE-DRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
.+|++++|||++++.++..+ ..|+..+....+ +.|+++|+||+|+.. .+. +..+++.++++.++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT 164 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence 99999999999999999998 789988887654 899999999999977 443 77889999999999
Q ss_pred CceEEEecCCC-CCCHHHHHHHHHHHHcCCchhh
Q 028239 152 AAAYIECSSKT-QQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 152 ~~~~~~~sa~~-~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
. +++++||++ +.|++++|++|.+.+.+...+.
T Consensus 165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 165 L-DFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp C-EEEECCC-------CHHHHHHHHHHHHHHHHH
T ss_pred C-EEEEeccCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 7 999999999 9999999999999987644433
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.7e-33 Score=201.26 Aligned_cols=164 Identities=31% Similarity=0.539 Sum_probs=143.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+.+||+|+|++|+|||||+++|++..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999999988877777765 445667788898899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||+
T Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (179)
T 2y8e_A 92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK 159 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999998 78887776654 5899999999999976554 778888889999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
+|.|++++|++|.+.+.+
T Consensus 160 ~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987654
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=203.25 Aligned_cols=165 Identities=28% Similarity=0.615 Sum_probs=146.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4679999999999999999999999998877777775444 456777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++.++. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
T 1zbd_A 86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK 153 (203)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence 99999999999998 78988887765 6899999999999977554 778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|++|.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICEK 172 (203)
T ss_dssp TTBSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 68
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=201.68 Aligned_cols=165 Identities=28% Similarity=0.613 Sum_probs=145.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 568999999999999999999999998888777775444 5667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... +..+++.++++..+. +++++||+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK 160 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 9999999999998 78988887754 589999999999995432 677888899999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 028239 162 TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++.|++++|++|.+.+.+...
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999987543
No 69
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=4.5e-33 Score=202.32 Aligned_cols=167 Identities=32% Similarity=0.597 Sum_probs=128.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+.+.++|+++|++|+|||||+++|++..+...+.++.+. .....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 456899999999999999999999999988777777643 344555665 566889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
+++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+..... .+..+++.++++.....++
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCE
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeE
Confidence 9999999999999998 78887776543 5899999999999964322 2677888888885555599
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++|.|++++|++|.+.+.+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.5e-32 Score=201.86 Aligned_cols=165 Identities=26% Similarity=0.486 Sum_probs=141.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeE--------------------------
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSI-------------------------- 53 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------- 53 (211)
|.+.+.+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7788899999999999999999999999998888777775443 4455555544
Q ss_pred -----------EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 54 -----------VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 54 -----------~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
+.+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISS-NYIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHS-CCEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhC-CCcEEEEEECCC-
Confidence 8899999999999999999999999999999999999999998 78888887655 499999999999
Q ss_pred ccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
...+. +..+++.++++..+. +++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33322 678889999999987 99999999999999999999988753
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2.3e-32 Score=195.41 Aligned_cols=161 Identities=35% Similarity=0.585 Sum_probs=144.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 85 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (211)
.+||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 58999999999999999999999998888888887777778888998999999999999999999998999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239 86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ 163 (211)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (211)
|++++.++..+ ..|+..+.... .+.|+++|+||+|+.... +..+++.++++..+. +++++||++|
T Consensus 83 d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T 2ce2_X 83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKTR 149 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999998 88888877664 389999999999987632 677888899999997 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 028239 164 QNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 164 ~~v~~lf~~l~~~~~~ 179 (211)
.|++++|+++.+.+.+
T Consensus 150 ~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 150 QGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.5e-32 Score=201.33 Aligned_cols=164 Identities=28% Similarity=0.528 Sum_probs=140.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCcc-ccccccccCCcE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYS-RLRPLSYRGADI 80 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ 80 (211)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.. ....+.+++..+.+.+||+||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3467999999999999999999999999888777776543 45667788888999999999999988 788889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++++++..+. +++++
T Consensus 97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 164 (189)
T 1z06_A 97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFET 164 (189)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 78888887764 6899999999999976543 778888999999887 99999
Q ss_pred cCCCC---CCHHHHHHHHHHHHc
Q 028239 159 SSKTQ---QNVKAVFDTAIKVVL 178 (211)
Q Consensus 159 sa~~~---~~v~~lf~~l~~~~~ 178 (211)
||+++ .|++++|++|++.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999988764
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=207.87 Aligned_cols=164 Identities=30% Similarity=0.611 Sum_probs=145.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4678999999999999999999999988777777765333 456667777788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..+++..+. +++++||+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 78999988866 6899999999999977654 788889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
+|.|++++|+++++.+.+
T Consensus 169 ~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICD 186 (191)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=6e-32 Score=198.86 Aligned_cols=164 Identities=25% Similarity=0.422 Sum_probs=133.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-ccccccccccCCcE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLRPLSYRGADI 80 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ 80 (211)
...+||+++|.+|+|||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|.+. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45699999999999999999999963 3555555555555667788899999999999999876 55567778889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC 158 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (211)
+++|||+++.++|+.+ ..|...+.... ++.|+++|+||+|+...+. +..+++..++...+. +|+++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999998 78877776643 5899999999999976443 677788888888886 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHcC
Q 028239 159 SSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 159 sa~~~~~v~~lf~~l~~~~~~ 179 (211)
||++|.||+++|+++++.+..
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999998854
No 75
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.7e-33 Score=208.87 Aligned_cols=165 Identities=39% Similarity=0.626 Sum_probs=142.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCe----------EEEEEEEeCCCCcCccccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGS----------IVNLGLWDTAGQEDYSRLR 71 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~l~D~~G~~~~~~~~ 71 (211)
.++.+||+|+|++|+|||||+++|++..+...+.+|.+..+ ...+.+++. .+.+.|||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 45679999999999999999999999988777766665444 345566655 7889999999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
..+++.+|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++.
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~ 170 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK 170 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence 9999999999999999999999998 78887776554 5899999999999976543 778889999999
Q ss_pred hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 150 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.+. +++++||+++.|++++|++|.+.+.+
T Consensus 171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 YGI-PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 987 99999999999999999999999865
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2e-31 Score=198.69 Aligned_cols=163 Identities=33% Similarity=0.640 Sum_probs=141.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
...++|+|+|++|+|||||+++|++..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999999998877777776543 4566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... . +..+++.++++..+. +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSC-C----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc-c----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887765 47999999999999432 2 677888889999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
++.|++++|++|.+.+.+
T Consensus 165 ~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998854
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.2e-32 Score=202.64 Aligned_cols=165 Identities=25% Similarity=0.297 Sum_probs=133.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------Cceeeee-eEEE-EECCeEEEEEEEeCCCCcCcc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----------PTVFDNF-SANV-AVDGSIVNLGLWDTAGQEDYS 68 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----------~t~~~~~-~~~~-~~~~~~~~l~l~D~~G~~~~~ 68 (211)
.+++.+||+++|++|+|||||++.+.+ .+...+. +|.+..+ ...+ .+++..+.+++||+||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 345789999999999999999965554 4444432 3333222 2223 456778899999999999999
Q ss_pred ccccccccCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239 69 RLRPLSYRGADIFVLAFSLI------SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ 142 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (211)
..+..+++++|++|+|||++ +.+++..+ ..|+..+....++.|+++|+||+|+... +..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~ 155 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM 155 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence 99999999999999999999 55677777 6777777544579999999999999764 67788
Q ss_pred HHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 143 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
+.++++..+..+++++||++|.|++++|++|.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 89999888876899999999999999999999988653
No 78
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.98 E-value=4.6e-31 Score=209.16 Aligned_cols=176 Identities=61% Similarity=1.040 Sum_probs=153.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 84 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (211)
..++|+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999999988999998888888888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239 85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKT 162 (211)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (211)
||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++.++++..+..+|+++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999998448988888877899999999999996542110 111122347888999999999876899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 028239 163 QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 163 ~~~v~~lf~~l~~~~~~~ 180 (211)
|.|++++|+.+.+.++.+
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988764
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=5.7e-32 Score=202.50 Aligned_cols=170 Identities=28% Similarity=0.430 Sum_probs=141.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE-CCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADI 80 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 80 (211)
+...+||+|+|.+|+|||||+++|+++.+...+.++.+..... .+.. ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999988877766776544433 3333 3455889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239 81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159 (211)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (211)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++...+. +++++|
T Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 155 (218)
T 4djt_A 88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEIS 155 (218)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEB
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence 9999999999999998 78988887765 4699999999999987544 778888888888887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 160 SKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
|++|.|++++|++|.+.+.......
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred cCCCCCHHHHHHHHHHHHhcccccc
Confidence 9999999999999999998765443
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-33 Score=207.05 Aligned_cols=165 Identities=31% Similarity=0.618 Sum_probs=134.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
++.+||+|+|.+|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4679999999999999999999999888777666654 344567778898899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.++++.++. +++++||+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999999 88988887765 5899999999999976553 555667788888887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|++|.+.+.+.
T Consensus 179 ~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp --HHHHHHHHHHTTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999998877553
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=7.3e-32 Score=202.43 Aligned_cols=166 Identities=28% Similarity=0.491 Sum_probs=142.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
....+||+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 34679999999999999999999887777666666664 44455677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+... . .+...+++..+. +|+++||+
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~ 157 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------K-AKSIVFHRKKNL-QYYDISAK 157 (221)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------C-GGGCCHHHHHTC-EEEECBGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------c-HHHHHHHHHcCC-EEEEEeCC
Confidence 999999999999999 889999988888999999999999976432 1 244556777787 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 028239 162 TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~~~ 182 (211)
+|.|++++|++|.+.+.....
T Consensus 158 ~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999977643
No 82
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-34 Score=212.49 Aligned_cols=174 Identities=62% Similarity=1.046 Sum_probs=147.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+++||+||++++...+..+++.+|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999999988888888887777777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++.++++..+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 9999999999998448888888766789999999999997643211 01111124667778888888886689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028239 162 TQQNVKAVFDTAIKVV 177 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~ 177 (211)
+|.|++++|+++++.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=3.8e-31 Score=195.04 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=125.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
....+||+|+|.+|+|||||+++|++..+.. .+.+|.+... ..+...+ +.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 4567899999999999999999999999877 6777776333 2333344 7788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC---------CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-HHhC
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFA---------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-KQIG 151 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 151 (211)
|+|||++++++|..+ ..|+..+.... +++|+++|+||+|+..... ...+......... +..+
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP 162 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence 999999999999998 66666654431 2899999999999976531 0001111111111 3344
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.+++++||++|.||+++|++|.+.+.+..
T Consensus 163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 -FVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp -EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred -eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999886543
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.1e-30 Score=193.08 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=121.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988764 345555443 35666777 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----------- 150 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (211)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+... ++.+++.+++...
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999998 6777766543 258999999999999752 5666666665532
Q ss_pred -----CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 151 -----GAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 151 -----~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
...+++++||++|.|++++|++|.+.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 234899999999999999999998643
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.9e-30 Score=189.55 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=124.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999998875 344555443 45666777 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----------- 150 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (211)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+... ++.++..+.....
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence 9999999999998 6777666543 268999999999999762 4555555544321
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 151 GAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 151 ~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
...+|+++||++|.|++++|+++.+.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23489999999999999999999764
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3e-30 Score=188.75 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=124.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||+++|.++.+. .+.+|.+ .....+.+++ +.+.+||+||++++...+..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56799999999999999999999988876 4455544 2234555666 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-----HhCCceEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-----QIGAAAYI 156 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (211)
|||+++++++..+ ..|+..+... ..+.|+++|+||+|+... ...++..+... ..+ .+++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSC-EEEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCC-cEEE
Confidence 9999999999998 6777766654 268999999999999753 23344433332 223 3899
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
++||++|.|++++|++|++.+.......
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999987655443
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=5.8e-30 Score=186.93 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=126.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||++++.++. ...+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 567999999999999999999999888 56666666533 34455565 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-----HhCCceEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-----QIGAAAYI 156 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (211)
|||++++.++..+ ..|+..+... .++.|+++|+||+|+.... ..++..+... ..+ .+++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHH-WRIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence 9999999999998 6666665543 2689999999999997642 2223222221 223 3899
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++||++|.|++++|+++.+.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988654
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=188.37 Aligned_cols=160 Identities=17% Similarity=0.246 Sum_probs=126.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+.+||+|+|.+|+|||||+++|.+.. +...+.+|.+ .....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887 5666666655 3344555665 67789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH--Hh--CCce
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK--QI--GAAA 154 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~ 154 (211)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... ...++..++.. .+ ...+
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPWH 162 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCceE
Confidence 99999999999998 66666665432 48999999999999754 34455555443 21 1248
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++++||++|.|++++|++|.+.+.+
T Consensus 163 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999987743
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=4.6e-30 Score=184.71 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=124.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||+++|.++.+.. +.+|.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 456999999999999999999999988754 4445432 234455565 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... ...+........++..+. +++++||+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT 151 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence 9999999999988 55655554332 6899999999999976521 000111111112222343 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 028239 162 TQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~~ 180 (211)
+|.|++++|+++.+.+.++
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999988653
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.9e-31 Score=189.15 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=118.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 86 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (211)
+||+++|++|+|||||+++|.++.+.. +.+|.+ .....+..++ +.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888764 345544 2223344444 678899999999999998889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-H----HHHhCCceEEEec
Q 028239 87 LISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-L----RKQIGAAAYIECS 159 (211)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~s 159 (211)
+++++++..+ ..|+..+... .++.|+++|+||+|+.... ...+... + ++..+ .+++++|
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~S 142 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRN-WYIQATC 142 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEEEECB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCcc-EEEEEcc
Confidence 9999999998 6676666543 2689999999999997642 1122111 1 11122 3799999
Q ss_pred CCCCCCHHHHHHHHHHHHcC
Q 028239 160 SKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~~~~v~~lf~~l~~~~~~ 179 (211)
|++|.|++++|+++.+.+.+
T Consensus 143 a~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred cCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=5.4e-31 Score=193.74 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=117.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
..+.+||+++|++|+|||||+++|.++.+.. +.+|.+ .....+..++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999999887753 333433 2233445555 77889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-H----HHHhCCceE
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-L----RKQIGAAAY 155 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 155 (211)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.... ...+..+ + +...+ .++
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~ 167 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRT-WYV 167 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCc-eEE
Confidence 99999999999998 67766665432 589999999999996642 1122111 1 11122 379
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++||++|.|++++|++|++.+.+
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999998754
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=4.8e-30 Score=187.91 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=125.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+|+|++|+|||||+++|.++.+...+.+|.+..+. .+...+ +.+.+||+||++.+...+..+++.+|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 46799999999999999999999999988777777765543 234444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----HHhCCceEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----KQIGAAAYI 156 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (211)
|||+++++++..+ ..|+..+... ..+.|+++|+||+|+.... ...+..+.. ...+ .+++
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 162 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDRE-ICCY 162 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCC-eeEE
Confidence 9999999999998 6666655443 2689999999999997642 222211111 1122 3799
Q ss_pred EecCCCCCCHHHHHHHHHHHHcC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++||++|.|++++|++|.+.+.+
T Consensus 163 ~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 163 SISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp ECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.4e-30 Score=192.12 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=123.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCCcCccccc---cccccCC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQEDYSRLR---PLSYRGA 78 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~---~~~~~~~ 78 (211)
+.+.+||+++|.+|+|||||++++.+........+...........+ ++..+.+++||+||++.|.... ..+++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 45679999999999999999998877543321111111111222233 3566889999999999988765 7899999
Q ss_pred cEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH----HhCC
Q 028239 79 DIFVLAFSLISR--ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK----QIGA 152 (211)
Q Consensus 79 d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 152 (211)
|++|+|||+++. +++..+ ..|+..+....++.|+++|+||+|+...... ....+.+...++.++++ ..+.
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHK---IETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHH---HHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhh---hHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 999999999997 666666 6677766555679999999999998653210 00012366677778888 5565
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+|+++||++ .||+++|+.+++.++
T Consensus 173 -~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 173 -SFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp -EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred -ceEEEEech-hhHHHHHHHHHHHhC
Confidence 999999999 999999999998763
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=4.6e-30 Score=186.87 Aligned_cols=156 Identities=17% Similarity=0.266 Sum_probs=121.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
..+.+||+++|.+|+|||||+++|.++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34679999999999999999999999887 4444444432 34555666 77889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-----HhCCceE
Q 028239 83 LAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-----QIGAAAY 155 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 155 (211)
+|||+++++++..+ ..|+..+... ..+.|+++|+||+|+... ...++..+... ..+ .++
T Consensus 94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~ 159 (181)
T 2h17_A 94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHI 159 (181)
T ss_dssp EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSC-EEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCc-eEE
Confidence 99999999999998 6666655543 268999999999999764 22333333221 122 389
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+++||++|.|++++|++|.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 999999999999999999764
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=3e-30 Score=189.00 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=123.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+++|++|+|||||++++.++.+.. +.+|.+ .....+..++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999999887654 344443 2233455555 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-----HHHHhCCceEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-----LRKQIGAAAYI 156 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 156 (211)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.... ...+..+ .+...+. +++
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 161 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIV 161 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999998 56655554432 589999999999997642 1122111 1122233 799
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++||+++.|++++|+++.+.+.+.
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988543
No 96
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=3.3e-29 Score=185.10 Aligned_cols=164 Identities=34% Similarity=0.577 Sum_probs=140.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..++|+++|++|+|||||+++|.+..+...+.++.+. .....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999887777777643 34567888999999999999999999988888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||+++..++..+ ..|+..+.... .+.|+++|+||+|+...+. +...+++.++...+. .++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999988 77877776554 5789999999999976543 667788899998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 028239 162 TQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~~~ 179 (211)
++.|++++|+++.+.+.+
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998865
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=6.5e-31 Score=191.97 Aligned_cols=167 Identities=22% Similarity=0.320 Sum_probs=122.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeee-eEEEEE---CCeEEEEEEEeCCCCcCccccccccccCCc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVAV---DGSIVNLGLWDTAGQEDYSRLRPLSYRGAD 79 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 79 (211)
.+||+++|++|+|||||+++|.+. .+...+.+|.+..+ ...+.+ ++..+.+.+||++|++.|...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 46666666765443 223222 345678899999999999999998999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc---HHHHHHHHHHhCCc--
Q 028239 80 IFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT---TAQGEELRKQIGAA-- 153 (211)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 153 (211)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+...+. +. ..++..+++..+..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999997 578888 889888877667899999999999976432 22 34455666666662
Q ss_pred -eEEEecCCCCC-CHHHHHHHHHHHHcCCchh
Q 028239 154 -AYIECSSKTQQ-NVKAVFDTAIKVVLQPPRR 183 (211)
Q Consensus 154 -~~~~~sa~~~~-~v~~lf~~l~~~~~~~~~~ 183 (211)
+|+++||+++. +++++++.+.+.+.....+
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhccccC
Confidence 29999999997 9999999999988776544
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=4e-30 Score=187.34 Aligned_cols=158 Identities=21% Similarity=0.260 Sum_probs=120.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||+++|.+..+. .+.+|.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 57899999999999999999999987642 33344332 233455665 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----HHhCCceEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----KQIGAAAYI 156 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (211)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+.... ..++..+.. ...+ .+++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 155 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRV-WQIQ 155 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCc-eEEE
Confidence 9999999999998 6666655433 2589999999999997643 122222211 1122 3799
Q ss_pred EecCCCCCCHHHHHHHHHHHHcC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++||++|.|++++|+++.+.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=9.4e-30 Score=185.18 Aligned_cols=158 Identities=13% Similarity=0.194 Sum_probs=120.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.++|+++|++|+|||||++++.++.+ ..+.+|.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF-NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC-CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 344444442 234455565 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIE 157 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (211)
|||++++.+++.+ ..|+..+... .++.|+++|+||+|+... ...++..+..... ...++++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~ 158 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSWSIVA 158 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCceEEEE
Confidence 9999999999998 6776666654 268999999999999764 2233333322211 1137999
Q ss_pred ecCCCCCCHHHHHHHHHHHHc
Q 028239 158 CSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+||++|.|++++|+++.+.+.
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 159 SSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EBGGGTBTHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999874
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=6.2e-28 Score=177.24 Aligned_cols=162 Identities=35% Similarity=0.612 Sum_probs=141.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
+..++|+++|++|||||||++++.+..++..+.+|.+..+ ...+.+++..+.+++||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3568999999999999999999999998877777775444 567888999999999999999999999998999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (211)
+|||+++..+++.+ ..|+..+.... .+.|+++++||+|+.+.+. +...+++.++...+. .++++||+
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999887 77877776544 5789999999999976543 567888999999887 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028239 162 TQQNVKAVFDTAIKVV 177 (211)
Q Consensus 162 ~~~~v~~lf~~l~~~~ 177 (211)
++.+++++|+.+.+.+
T Consensus 175 d~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 175 DSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998876
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.6e-29 Score=187.53 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=117.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCCcCccc-cccccccCCc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGS-IVNLGLWDTAGQEDYSR-LRPLSYRGAD 79 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~-~~~~~~~~~d 79 (211)
.+.+.+||+++|++|+|||||+++|+++.+...+.++...... +.+++. .+.+++|||||++.+.. ++..+++.+|
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3456899999999999999999999999988887765543333 555543 57888999999999987 7888899999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccCccccc------------cccCC--------
Q 028239 80 IFVLAFSLISRA-SYENVLKKWMPELRRF---APNVPIVLVGTKLDLREDRGYLA------------DHVGS-------- 135 (211)
Q Consensus 80 ~~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~------------~~~~~-------- 135 (211)
++++|||+++.. ++......|...+... .++.|+++|+||+|+........ .....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999864 4666646666666542 25799999999999976532000 00000
Q ss_pred ----ccccHHHHHHHHHHhC--CceEEEecCCCC------CCHHHHHHHHHHH
Q 028239 136 ----NVITTAQGEELRKQIG--AAAYIECSSKTQ------QNVKAVFDTAIKV 176 (211)
Q Consensus 136 ----~~~~~~~~~~~~~~~~--~~~~~~~sa~~~------~~v~~lf~~l~~~ 176 (211)
+.+..+++..++.+.. .++|+++||++| .||+++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000001111111111 358999999999 9999999999875
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=8.7e-28 Score=173.91 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=118.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
..+.++|+++|++|+|||||+++|.+..+...+.++.. +.....+.+++. .+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35678999999999999999999999887766555443 333456677775 456999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC--------Cc
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG--------AA 153 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 153 (211)
++|||++++...... .++..+.. .+.|+++|+||+|+.... .++.....+..+ ..
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence 999999884333322 12223333 379999999999997632 122222222222 14
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+++++||++|.|++++|++|++.+...+
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 8999999999999999999998875543
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=189.90 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=123.7
Q ss_pred CCceeEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCCCce-eeee-eEE--------------EEECCeEE
Q 028239 3 ASKFIKCVTVGDG---------AVGKTCMLICYTS---NKFPTDYIPTV-FDNF-SAN--------------VAVDGSIV 54 (211)
Q Consensus 3 ~~~~~~I~viG~~---------~~GKSsli~~l~~---~~~~~~~~~t~-~~~~-~~~--------------~~~~~~~~ 54 (211)
..+.+||+|+|.+ |+|||||+++|.+ ..+...+.++. +..+ ... ..+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3467999999999 9999999999999 55666666664 2221 111 12466778
Q ss_pred EEEEEe-----------------------CCCCcCcccccccccc---------------------CCcEEEEEEECCCh
Q 028239 55 NLGLWD-----------------------TAGQEDYSRLRPLSYR---------------------GADIFVLAFSLISR 90 (211)
Q Consensus 55 ~l~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~ 90 (211)
.++||| ++|+++|..++..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 7788888888888887 79999999999998
Q ss_pred --hhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 91 --ASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 91 --~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
.+++.+ ..|+..+... .+++|+++|+||+|+...+. + +++.++++.....+|+++||++|.|+
T Consensus 176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 999998 7888887765 26899999999999965432 3 56777777643349999999999999
Q ss_pred HHHHHHHHHHHc
Q 028239 167 KAVFDTAIKVVL 178 (211)
Q Consensus 167 ~~lf~~l~~~~~ 178 (211)
+++|++|++.+.
T Consensus 243 ~elf~~l~~~l~ 254 (255)
T 3c5h_A 243 DLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=4.4e-28 Score=190.35 Aligned_cols=172 Identities=17% Similarity=0.236 Sum_probs=131.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc-----ccccccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY-----SRLRPLSYR 76 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----~~~~~~~~~ 76 (211)
..+||+++|.+|+|||||+++++++. +.. .+.+|.+..+ ..+.+++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~-~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH-SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE-EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE-EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 46899999999999999999999873 332 3333433333 3444444 478899999999988 778888899
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHh---hhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELR---RFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA- 152 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (211)
++|++++|||++++++++++ ..|...+. ...+++|+++|+||+|+...... .....+..+++.++++.++.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998 66655444 44578999999999999762210 00001455778899999873
Q ss_pred -ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 153 -AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 153 -~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
.+++++||++ .++.++|..+++.+......-
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~~~l 186 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNMSNH 186 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCSCHHHH
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5999999999 899999999999887755433
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2.7e-29 Score=196.23 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=124.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---cccccccCCcEE
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---LRPLSYRGADIF 81 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~~ 81 (211)
||+++|..|+|||||++++.++.++. .+.+|.+..+.. ++ ..+.+++|||||+++|.. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 69999999999999999988765433 244555544432 23 348899999999999975 357889999999
Q ss_pred EEEEECCCh--hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH----hCCceE
Q 028239 82 VLAFSLISR--ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ----IGAAAY 155 (211)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (211)
|+|||+++. +++... ..|+..+....+++|++++|||+|+...... ....+.+..++++++++. .+. +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VDAQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HHHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hhHHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999997 233333 3345555555689999999999999764210 000123677777888875 455 99
Q ss_pred EEecCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVLQPPRRKEM 186 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~ 186 (211)
++|||++ .+|.++|..+++.++.+...-+.
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~le~ 181 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPELSFLEN 181 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTHHHHHH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhHHHHHH
Confidence 9999998 58999999999999875544443
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.2e-29 Score=195.89 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=116.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+|+|.+|+|||||+++|.++.+...+ +|.... ...+...+ +.++||||||++.+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35689999999999999999999988875443 333222 22334444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-H----HhCCceEEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-K----QIGAAAYIE 157 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 157 (211)
|||++++.++..+...|...+.... +++|++||+||+|+..... ..+..... . ..+ .+|++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~-~~~~~ 305 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRN-WYIQA 305 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSC-EEEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCC-CEEEE
Confidence 9999999999998444444444333 6899999999999976531 22221111 1 112 37999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcCC
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
+||++|.||+++|++|++.+.++
T Consensus 306 vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 306 TCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EECCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999988653
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=9.4e-28 Score=172.19 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=113.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------cccccc--
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-VFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSYR-- 76 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~~-- 76 (211)
.++|+++|++|+|||||+++|.+..+.....++ ..+.....+.+++ ..+.+|||||++.+... ...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999999987653333232 3334444556666 56789999999887532 244454
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
++|++++|+|+++.+.. ..|+..+.+. +.|+++|+||+|+...+. +.. ++.++++.++. +++
T Consensus 81 ~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~~ 142 (165)
T 2wji_A 81 KPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KVV 142 (165)
T ss_dssp CCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CEE
T ss_pred CCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CEE
Confidence 89999999999886533 3455555543 799999999999865432 222 35677888886 999
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 028239 157 ECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~ 177 (211)
++||++|.|++++|+++.+.+
T Consensus 143 ~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 143 PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999998875
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.4e-27 Score=179.99 Aligned_cols=166 Identities=12% Similarity=0.086 Sum_probs=116.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc---------ccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS---------RLRPL 73 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~ 73 (211)
.+.++|+|+|.+|+|||||+++|++..+.. .+..+........+..++ +.+.+|||||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 467999999999999999999999987642 222223333333444455 567899999984321 11123
Q ss_pred cccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHH---HHHHHHHH
Q 028239 74 SYRGADIFVLAFSLISRASYENV-LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTA---QGEELRKQ 149 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 149 (211)
++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+...+. +... +..+++..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence 46788999999999998876521 1456666665556899999999999976543 4433 45666666
Q ss_pred hC-CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 150 IG-AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 150 ~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.+ ..+++++||++|.|++++|++|.+.+.+.+
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 175 VKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 65 138999999999999999999999986544
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=6.3e-27 Score=166.61 Aligned_cols=150 Identities=21% Similarity=0.180 Sum_probs=107.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-------ccccccccC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-------RLRPLSYRG 77 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~ 77 (211)
.||+++|++|+|||||++++.+..+ ...+.++..+.....+..++. .+.+||+||++.+. ..+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 6899999999999999999998874 334444444555566667774 56799999988742 334556889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE 157 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (211)
+|++++|+|++++.+... ..+...+... +.|+++|+||+|+...+. ++.+++ ..+..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence 999999999998655443 2333444443 799999999999976421 122333 455547999
Q ss_pred ecCCCCCCHHHHHHHHHHHH
Q 028239 158 CSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~ 177 (211)
+||++|.|++++|+++.+.+
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EecccCCChHHHHHHHHHhC
Confidence 99999999999999998864
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3.9e-27 Score=173.04 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=107.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCC----------CcCcccc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAG----------QEDYSRL 70 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G----------~~~~~~~ 70 (211)
.....++|+|+|++|+|||||+++|++..+...+.++.+.... .....++ .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 4556799999999999999999999998765555555443332 2233443 477999999 5556666
Q ss_pred ccccccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccH--HHHHH
Q 028239 71 RPLSYRGA---DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITT--AQGEE 145 (211)
Q Consensus 71 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 145 (211)
+..+++.+ |++++|+|++++.++.+. .+...+.. .+.|+++|+||+|+...+. +.. ++..+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~ 161 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence 66666666 999999999998887764 33344443 3799999999999976542 221 22222
Q ss_pred -HHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 146 -LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 146 -~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+....+ .+++++||++|.|++++|+++.+.+.
T Consensus 162 ~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 221223 48999999999999999999998764
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=3.5e-26 Score=190.57 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=121.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 83 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (211)
.+.+||+|+|.+|+|||||+++|.+..+... .+|.+..+ ..+...+ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE-EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeE-EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999999886543 34444333 2334444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEE
Q 028239 84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIE 157 (211)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (211)
|||++++++|..+ ..|+..+.... .++|+|||+||+|+.... ...+........ ...++++
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHHHHHHTTCTTCCSSCEEEEE
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHHHHHHhchhhhhcCCeEEEE
Confidence 9999999999999 55655554322 589999999999997642 222222111110 1136999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQPPRRK 184 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~~~~~~ 184 (211)
+||++|.||+++|++|.+.+.....+.
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC------
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999876544443
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=3.7e-27 Score=197.99 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=124.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE-------EE--CCeEEEEEEEeCCCCcCcccccc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-------AV--DGSIVNLGLWDTAGQEDYSRLRP 72 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-------~~--~~~~~~l~l~D~~G~~~~~~~~~ 72 (211)
.....+||+++|.+|+|||||++++.+..+...+.+|.+..+.... .+ ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3556799999999999999999999999988888788765554321 11 23357788999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
.+++.+|++++|||+++.+ .. ..|...+....++.|+++|+||+|+...+. +..++..+++...+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN 182 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred HHccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence 9999999999999998753 34 678888888777899999999999987554 677888888888887
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCCch
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
+++++||++|.|++++|+.+.+.+.....
T Consensus 183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 183 -RFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred -ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999877543
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.6e-26 Score=168.84 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=119.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc------cccccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR------LRPLSY 75 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~ 75 (211)
+-+.++|+++|++|+|||||+++|.+..+.. .++++........+..++ +.+.+|||||++.+.. ++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 4467899999999999999999999876332 233333344455566666 6677999999988753 344455
Q ss_pred c--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 76 R--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 76 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
+ .+|++++|+|.++ ++.. ..|...+.. .+.|+++|+||+|+...+. +. .+..++++..+.
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~- 143 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV- 143 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred hccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence 3 5999999999876 3444 556666655 3899999999999876432 22 345677888887
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+++++||+++.|++++|+++.+.+....
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 144 KVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987654
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.6e-25 Score=175.77 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=129.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCcc----------
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYS---------- 68 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~---------- 68 (211)
++...-.|+++|.+|+|||||+|+|++..+. .....++..........+ + +.+.||||||+..+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 4556779999999999999999999998864 344444444444555555 5 567799999986654
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
..+..+++.+|++++|+|++++.++.+. ..|...+... +.|+++|+||+|+..... ........+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~ 150 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHH
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHH
Confidence 3445578899999999999999888887 6777777764 899999999999973332 55667777888
Q ss_pred HhC-CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 149 QIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 149 ~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
..+ ..+++++||++|.|++++|+++.+.+...
T Consensus 151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 151 KHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 874 45899999999999999999999998654
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=3.9e-26 Score=164.92 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=114.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~ 74 (211)
..++|+++|.+|+|||||+++|.+..+ ...+.++..+.....+.+++.. +.+|||||++.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998763 3455566666666777888754 6799999987653211 124
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
++.+|++++|||++++.++.. ..|+..+.... .++|+++|+||+|+...... . ++..+ .
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---------~--------~~~~~-~ 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG---------M--------SEVNG-H 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE---------E--------EEETT-E
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh---------h--------hhccC-C
Confidence 789999999999999888764 46666666654 47999999999998643210 0 01123 3
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+++++||++|.|++++|+++.+.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999999987643
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=2.5e-26 Score=168.42 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=113.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCC----------CcCcccc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAG----------QEDYSRL 70 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~D~~G----------~~~~~~~ 70 (211)
+....++|+++|++|+|||||+++|++..+. .+.++.+...... ...+. .+.+||+|| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 3456789999999999999999999998733 2233333222222 22332 366999999 4555555
Q ss_pred ccccccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239 71 RPLSYRGA---DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR 147 (211)
Q Consensus 71 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
+..+++.+ |++++|+|+++..+.... .+...+... +.|+++|+||+|+..... .....++..+++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~ 162 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVF 162 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHH
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHH
Confidence 66665554 999999999876554442 223333333 799999999999975421 124445666777
Q ss_pred HHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 148 KQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 148 ~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
...+..+++++||++|.|++++|+++.+.+.+
T Consensus 163 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 163 SKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 77665699999999999999999999998754
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=9.4e-26 Score=172.89 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=119.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc------cccc-
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR------PLSY- 75 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~------~~~~- 75 (211)
.+.++|+++|++|+|||||+++|.+..+ ...+++++.+.....+...+ +.+.+||+||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998764 33444444444455555555 667799999998887643 3444
Q ss_pred -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 76 -RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+...+. +. .+..++++.++. +
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~ 142 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P 142 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence 5899999999999876543 344455544 899999999999876443 22 236778888887 9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
++++||++|.|++++|+++.+.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 143 VVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=8.9e-27 Score=170.29 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=115.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------CcCccccccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG-----------QEDYSRLRPLSY 75 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~~~~ 75 (211)
+||+++|++|+|||||+++|.+..+...+.++.. .....+..+ .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT-TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc-ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999887666555432 112223333 477999999 455666666667
Q ss_pred cC-CcEEEEEEECCChhhHHHHHHHHHHH--------H-hhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239 76 RG-ADIFVLAFSLISRASYENVLKKWMPE--------L-RRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE 144 (211)
Q Consensus 76 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+. ++++++||++.+..++..+...|... + .... .+.|+++|+||+|+.... .++..
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 66 77777777777777877764566542 1 1111 489999999999987642 45677
Q ss_pred HHHHHhCCc------eEEEecCCCCCCHHHHHHHHHHHHcCCch
Q 028239 145 ELRKQIGAA------AYIECSSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 145 ~~~~~~~~~------~~~~~sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++++.++.. +++++||++|.|++++|+++.+.+.+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 788888862 37999999999999999999998865443
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=1.2e-25 Score=173.31 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=114.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc------ccccccc-
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR------LRPLSYR- 76 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~~- 76 (211)
..++|+++|++|+|||||+++|.+.. +...+++++.+.... .++. .+.+.+||+||+..+.. ++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45899999999999999999999875 555555444333222 2333 45688999999988763 3344554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 77 -GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 77 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
.+|++++|+|+++.++.. .|...+... +.|+++|+||+|+...+. +. .+...+++.++. ++
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v 140 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV 140 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence 699999999999866543 444445443 899999999999875432 22 345677888887 99
Q ss_pred EEecCCCCCCHHHHHHHHHHHHc
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+++||++|.|++++|+++.+.+.
T Consensus 141 i~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 141 VATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEEccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.5e-24 Score=169.53 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=113.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--------ccccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--------SRLRPLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~ 74 (211)
+..+|+++|.+|+|||||+|+|++..+.. ..+.|+.......+..++ ..+.||||||.... ......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 45689999999999999999999988642 333444443333444444 66779999998763 3344557
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++++|+|++++.+..+ ..+...+....++.|+++|+||+|+..... ...+...++ .+..+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~~~~~~~~~---~~~~~ 148 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------EAMKAYHEL---LPEAE 148 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------HHHHHHHHT---STTSE
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------HHHHHHHHh---cCcCc
Confidence 899999999999998765554 344456665556899999999999875421 011222222 34457
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++++||++|.|++++|+.+.+.+.+
T Consensus 149 ~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 149 PRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEEEeCCCCCCHHHHHHHHHHhccc
Confidence 9999999999999999999987643
No 121
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=3.2e-24 Score=176.83 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=100.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~ 74 (211)
..++|+++|.+|+|||||+|+|++.. +...+.+++.+.....+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 35899999999999999999999875 556677777777777788888 457799999987766443 336
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++++|+|++++.+++.+ ..+...+... .+.|+++|+||+|+..... . ...++.+... .+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~~~-~~ 373 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADGTG-TE 373 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHHHT-SC
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhcCC-Cc
Confidence 7899999999999998887533 3333333322 3799999999999976542 2 1133444322 48
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
++++||++|.|++++|++|.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999986
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=3.3e-25 Score=169.64 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=114.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----------cccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----------LRPLSY 75 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------~~~~~~ 75 (211)
.+|+++|.+|+|||||+++|.+... ...+++++.+.....+..++. .+.+||+||...+.. ++..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998863 334455555666667777775 667999999987764 334455
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239 76 --RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA 153 (211)
Q Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
+.+|++++|+|+++.++...+ ...+... +.|+++|+||+|+...+. +. .....+.+.++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~- 141 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC- 141 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence 899999999999997655443 3334433 799999999999876442 11 123457777886
Q ss_pred eEEEecCCCCCCHHHHHHHHHHH
Q 028239 154 AYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 154 ~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
+++++||++|.|++++|+++.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 142 SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999999886
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=6.3e-25 Score=164.61 Aligned_cols=165 Identities=11% Similarity=0.019 Sum_probs=109.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcC----------cc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQED----------YS 68 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~----------~~ 68 (211)
....++|+|+|.+|+|||||+++|++.. ......++..... ...+. .....+.||||||... +.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 4567899999999999999999999986 2333333332222 22222 2235577999999533 23
Q ss_pred ccccccccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 69 RLRPLSYRG---ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 69 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
..+..+++. +|++++|+|+++..+..+ ..|+..+... +.|+++|+||+|+...... .....+..+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~ 171 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQK 171 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHH
Confidence 333344443 888999999988655443 4566666654 7999999999999764320 001122223
Q ss_pred HHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 146 LRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 146 ~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
..... ...+++++||++|.|++++|++|.+.+....
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 33332 4458999999999999999999999986543
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3.2e-25 Score=171.39 Aligned_cols=156 Identities=14% Similarity=0.177 Sum_probs=115.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----------cc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----------PL 73 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----------~~ 73 (211)
+.++|+++|.+|+|||||+|+|++..+. ..+.+++.+.....+...+. .+.+|||||+..+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 3589999999999999999999987742 33444445555566666664 45699999998876321 11
Q ss_pred c--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 74 S--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 74 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
+ .+.+|++++|+|+++.+....+ ...+... ++|+++|+||+|+...+. +. .....+.+.++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcC
Confidence 2 2799999999999986654443 3344444 799999999999876432 11 22456777888
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
. +++++||++|.|++++|+++.+.+...
T Consensus 143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 7 999999999999999999998877644
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=6.3e-24 Score=163.99 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=116.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc------cccccc--c
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR------LRPLSY--R 76 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~--~ 76 (211)
.++|+++|++|+|||||+++|.+..+.. .+.+++.+.....+..++.. +.+||+||...+.. .+..++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 5899999999999999999999887532 33333445555566677744 67999999988776 344444 6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.+|++++|+|+++.+.. ..|...+... ...|+++|+||+|+...+. +.. ....+.+.++. +++
T Consensus 81 ~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~~ 143 (271)
T 3k53_A 81 NADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PVI 143 (271)
T ss_dssp CCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CEE
T ss_pred CCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cEE
Confidence 89999999999986432 2333333333 1399999999999875432 222 26677888887 999
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++||++|.|++++|+.+.+.+...
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999987543
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.9e-24 Score=177.23 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=115.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----------cccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----------YSRLRP 72 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~ 72 (211)
..++|+++|.+|+|||||+++|++... ...+.+++.+.....+..++.. ++||||||+.+ |...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 568999999999999999999998874 4566677777777777788854 66999999843 222222
Q ss_pred -ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHHHh
Q 028239 73 -LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRKQI 150 (211)
Q Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (211)
.+++.+|++++|+|++++.++++. .|...+... +.|+++|+||+|+.+.+. ...++. .++.+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence 367889999999999999988885 566666543 899999999999976542 333332 2222322
Q ss_pred ---CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 151 ---GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 151 ---~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
...+++++||++|.|++++|+.+.+.+..
T Consensus 318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 23499999999999999999999988754
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.5e-25 Score=164.92 Aligned_cols=143 Identities=12% Similarity=0.134 Sum_probs=102.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccC--
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRG-- 77 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~-- 77 (211)
..+.++|+++|++|+|||||+++|.+..+... +.++....+ ..+.+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 34678999999999999999999999886542 333332222 33567799999999998888888776
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCcEEEEeeCCCcccCccccccccCCcccc------HHHH
Q 028239 78 --ADIFVLAFSLI-SRASYENVLKKWMPELRRF-----APNVPIVLVGTKLDLREDRGYLADHVGSNVIT------TAQG 143 (211)
Q Consensus 78 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 143 (211)
+|++++|||++ +++++..+ ..|+..+... .+++|+++|+||+|+..... +. .+++
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~ 149 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEI 149 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHH
Confidence 89999999999 88888888 5555554432 25899999999999977543 22 4556
Q ss_pred HHHHHHhCCceEEEecCCCCCC
Q 028239 144 EELRKQIGAAAYIECSSKTQQN 165 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~sa~~~~~ 165 (211)
..++...+. +|+++||++|.+
T Consensus 150 ~~~~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 150 QKVIERRKK-SLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHH-HHHC--------
T ss_pred HHHHHHHhc-cccccccccccc
Confidence 677777665 899999998875
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=4.2e-24 Score=176.17 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=121.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------CcCccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG----------QEDYSRLR 71 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~ 71 (211)
...++|+++|.+++|||||+++|++.. ....+.+++.+.....+..++. .+++||||| ++.|...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 356899999999999999999999765 4556667777777777778885 567999999 55555554
Q ss_pred cc-cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239 72 PL-SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI 150 (211)
Q Consensus 72 ~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (211)
.. +++.+|++++|+|+++..+..+ ..|...+... +.|+++|+||+|+...+. +..++..+.++..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 43 6788999999999988665444 4566666554 799999999999986543 5566666666555
Q ss_pred ----CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 151 ----GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 151 ----~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
+..+++++||++|.|++++|+.+.+.+...
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 235999999999999999999999887543
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=3e-23 Score=170.28 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=106.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---------cccccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---------SRLRPLSY 75 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------~~~~~~~~ 75 (211)
.+|+++|.+|+|||||+|+|++.. +...+++++.+.....+.+++.. +.+|||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999999876 35666677777777778888854 569999997653 22345578
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHHHhCCce
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRKQIGAAA 154 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (211)
+++|++++|+|++++.+..+ ..+...++.. +.|+++|+||+|+... . ..+. .++. ..+..+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~ 141 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE 141 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence 99999999999988766554 2333344443 7999999999997532 1 1122 3333 455446
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
++++||++|.|++++|+++.+.+.
T Consensus 142 ~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 142 PIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCHHHHHHHHHHhcc
Confidence 899999999999999999998885
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.6e-22 Score=161.85 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=117.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc---------ccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL---------RPL 73 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~---------~~~ 73 (211)
...++|+++|++|+|||||+++|.+..+. ..+..++.......+..++ ..+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 35689999999999999999999987642 1222333222223333444 56779999998553211 112
Q ss_pred cccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239 74 SYRGADIFVLAFSLISRA--SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG 151 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
....+|++++|+|+++.. ++... ..|+..+....++.|+++|+||+|+..... .++...++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence 345799999999998876 67776 678777777555899999999999976432 244556666666
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 152 AAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
. +++++||++|+|++++|+++.+.+..
T Consensus 310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 310 L-NPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp C-CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred C-CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 6 89999999999999999999999854
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=2.8e-24 Score=174.51 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=115.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc-------c
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL-------S 74 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------~ 74 (211)
...++|+|+|.+++|||||+++|++..+ ...+.+++.+.....+.+.+. ..+.+|||||++.+...... +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 4578999999999999999999998875 344555555555566666654 26779999999888765333 6
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++++|+|++..+. . ..|+..+... +.|+++|+||+|+..... . +...++.+.++. +
T Consensus 111 l~~aD~vllVvD~~~~~~---~-~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY---E-DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHH---H-HHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHH---H-HHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-C
Confidence 889999999999833222 1 5666667666 899999999999987643 2 556666667776 9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
++++||++|.|++++|++|.+.+.+.
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999998543
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=4.8e-23 Score=163.86 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=99.7
Q ss_pred EEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCcEE
Q 028239 47 VAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RASYENVLKKWMPELRRF--APNVPIV 114 (211)
Q Consensus 47 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~i 114 (211)
+.+++ +.+++||++|++.++..|..++++++++|+|||+++ ..++.+. ..|+..+... .+++|+|
T Consensus 188 ~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 188 FTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEE
T ss_pred EeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEE
Confidence 34444 778899999999999999999999999999999999 4568888 6666666543 2689999
Q ss_pred EEeeCCCcccCcccc-----ccccCCccccHHHHHHHHHH----------hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 115 LVGTKLDLREDRGYL-----ADHVGSNVITTAQGEELRKQ----------IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 115 vv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
|++||+|+...+... ....-...++.+++.+++.. .....+++|||+++.||.++|+++.+.+..
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 999999986432110 00001123677888888873 233489999999999999999999998864
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=1.8e-23 Score=172.48 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=117.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc-Cccccc--------ccc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE-DYSRLR--------PLS 74 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~-~~~~~~--------~~~ 74 (211)
.++|+++|.+|+|||||+|+|.+.. +...+.+|+.+.....+.+++. .+.+|||||.. .+.... ..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999875 5677778887777788888884 56799999987 655322 235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++|+|+|++++.++++. . +++.+ .+.|+++|+||+|+... +..++..++.. .+ .+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~-~~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TD-RH 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CS-TT
T ss_pred hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CC-Cc
Confidence 7889999999999998887764 3 33333 37899999999999653 23344444332 22 38
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
++++||++|.|++++|++|.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999765
No 134
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=6.2e-23 Score=161.08 Aligned_cols=132 Identities=15% Similarity=0.152 Sum_probs=99.3
Q ss_pred EEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC--CCCcEE
Q 028239 47 VAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SRASYENVLKKWMPELRRFA--PNVPIV 114 (211)
Q Consensus 47 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~--~~~p~i 114 (211)
+.+++ +.+++||++|++++++.|..++++++++|+|||++ +..++.+. ..|+..+.... +++|++
T Consensus 162 ~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 162 FDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp EEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEE
T ss_pred EEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEE
Confidence 34444 77889999999999999999999999999999665 66778887 45555554332 689999
Q ss_pred EEeeCCCcccCcccc------ccccCCccccHHHHHHHHH----------HhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 115 LVGTKLDLREDRGYL------ADHVGSNVITTAQGEELRK----------QIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 115 vv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
|++||+|+...+... .++..-..++.+++.++.. ..+ ..+++|||+++.||..+|..+.+.++
T Consensus 239 L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 239 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 999999987644211 1112222467788887743 233 47899999999999999999999987
Q ss_pred CCch
Q 028239 179 QPPR 182 (211)
Q Consensus 179 ~~~~ 182 (211)
+...
T Consensus 318 ~~~l 321 (327)
T 3ohm_A 318 QLNL 321 (327)
T ss_dssp HTTC
T ss_pred HHhH
Confidence 6543
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=4.3e-22 Score=161.76 Aligned_cols=169 Identities=12% Similarity=0.053 Sum_probs=115.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-------eEEE---------EE---CCeEEEEEEEeCC
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-------SANV---------AV---DGSIVNLGLWDTA 62 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-------~~~~---------~~---~~~~~~l~l~D~~ 62 (211)
.....++|+++|++++|||||+++|++............... ...+ .. ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 456789999999999999999999998543221100000000 0000 00 1123678899999
Q ss_pred CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ 142 (211)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (211)
|++.|...+...+..+|++++|+|++++.++... ..++..+.... ..|+++|+||+|+.+.... ....++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~--------~~~~~~ 153 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEA--------LSQYRQ 153 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------HHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHH--------HHHHHH
Confidence 9999999888889999999999999988755555 55555555442 3589999999999764310 011122
Q ss_pred HHHHHHHhC--CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 143 GEELRKQIG--AAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 143 ~~~~~~~~~--~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
..++....+ ..+++++||++|.|++++++.|.+.+...
T Consensus 154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 233332221 24899999999999999999999877554
No 136
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=1.9e-23 Score=166.09 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=94.6
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeC
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SRASYENVLKKWMPELRRF--APNVPIVLVGTK 119 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK 119 (211)
..+.+++||++|++.+++.|..++++++++|+|||++ +..++.+. ..|+..+... .+++|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 78899998 6666666543 268999999999
Q ss_pred CCcccCccccc--------cccC---CccccHHHHHHHHHHh---------------CCceEEEecCCCCCCHHHHHHHH
Q 028239 120 LDLREDRGYLA--------DHVG---SNVITTAQGEELRKQI---------------GAAAYIECSSKTQQNVKAVFDTA 173 (211)
Q Consensus 120 ~Dl~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~---------------~~~~~~~~sa~~~~~v~~lf~~l 173 (211)
+|+..++.... ++.. ....+.+++.+++... ....+++|||+++.||.++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99865432110 0000 0122456777764431 22356899999999999999999
Q ss_pred HHHHcC
Q 028239 174 IKVVLQ 179 (211)
Q Consensus 174 ~~~~~~ 179 (211)
.+.+.+
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998853
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=9.4e-22 Score=153.85 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=113.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc---------Ccccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE---------DYSRLRP 72 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~ 72 (211)
.+..+|+++|++|+|||||+++|++..+. .....++.......+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45568999999999999999999998742 2233343333333344455 567799999987 3445566
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
..++.+|++++|+|+++ -+-.+ ..+...+.. .+.|+++++||+|+...+. .......++.+..+.
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF 148 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred HHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence 78899999999999977 33222 233333433 3799999999999876221 234455566666665
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
..++++||+++.|++++++.+.+.+..
T Consensus 149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 579999999999999999999987643
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=8.9e-23 Score=161.74 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=118.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc----Ccccccccccc---CCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE----DYSRLRPLSYR---GAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~----~~~~~~~~~~~---~~d 79 (211)
+|+|+|.++||||||+++|.+..+ ...+..++.......+.+++. ..+.+||+||.. .+..+...+++ .+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998753 234444443333344555541 357799999953 34445455554 499
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-
Q 028239 80 IFVLAFSLIS---RASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA- 152 (211)
Q Consensus 80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (211)
++|+|+|+++ .++++++ ..|...+..+. .+.|+++|+||+|+.... +...++.+.+..
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~~ 303 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD 303 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhcC
Confidence 9999999998 7888888 78888888764 489999999999986531 334566666652
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 153 AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
.+++++||+++.|++++|++|.+.+.+..
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 38999999999999999999999986644
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=1.3e-22 Score=166.68 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=108.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc--------cc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP--------LS 74 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~--------~~ 74 (211)
..++|+++|++|+|||||+|+|++.. +.....+++.+.....+.+++. .+.+|||||...+...++ ..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35799999999999999999999864 4556666776666677778884 467999999866554332 35
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239 75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA 154 (211)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
++.+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+..... +. ...++. ...+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~---~~~~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE---NITQ 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT---TCCC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc---cCCc
Confidence 788999999999999877665 45555553 479999999999976543 11 000111 2248
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 155 YIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 155 ~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
++++||++|.|++++|++|.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999886543
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=3.7e-22 Score=168.03 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=118.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC--CCCC-----CCCCce------eeee---eEEEEE---CCeEEEEEEEeC
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIPTV------FDNF---SANVAV---DGSIVNLGLWDT 61 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~-----~~~~t~------~~~~---~~~~~~---~~~~~~l~l~D~ 61 (211)
|..++..+|+++|+.++|||||+++|+.. .+.. ....+. +..+ ...+.+ ++..+.++||||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 55567789999999999999999999862 2211 111110 1111 112222 456788999999
Q ss_pred CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHH
Q 028239 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTA 141 (211)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 141 (211)
||+.+|...+...++.+|++++|+|++++.+.+.. ..|..... .+.|+++|+||+|+...+ ...
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~ 144 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDR 144 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHH
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHH
Confidence 99999998888889999999999999999888877 66765543 278999999999997642 223
Q ss_pred HHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 142 QGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 142 ~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
...++.+.++. .+++++||++|.|++++|+++++.+....
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 34555565554 24899999999999999999999887654
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.1e-21 Score=159.38 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=109.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-----------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----------- 71 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----------- 71 (211)
..++|+++|++|+|||||+++|++... ...+.+++.+.....+.+++.. +.+|||||..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998763 5566666666667778888864 5699999975443221
Q ss_pred -cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH-HHHHH
Q 028239 72 -PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE-ELRKQ 149 (211)
Q Consensus 72 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (211)
...++.+|++++|+|+++..+.++. .+...+... +.|+++|+||+|+.+.+. ...++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 1245678999999999987776653 344444443 899999999999976432 2233222 22232
Q ss_pred h---CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 150 I---GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 150 ~---~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+ ...+++++||++|.|++++|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 23489999999999999999999887744
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=7.1e-22 Score=151.56 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=107.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCc--eeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc-------
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPT--VFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL------- 73 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~------- 73 (211)
...++|+|+|.+|+|||||+++|++.. +...+.++ +.......+..++ ..+.||||||+..+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 356899999999999999999999877 44444333 3344444556666 45679999998766543222
Q ss_pred ----cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEee-CCCcccCccccccccCCccccH-------H
Q 028239 74 ----SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGT-KLDLREDRGYLADHVGSNVITT-------A 141 (211)
Q Consensus 74 ----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~~~~~~~~~~~-------~ 141 (211)
.++.+|++++|+|+++..........++..+.......|.++++| |+|+.... +.. .
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~ 166 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNK 166 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchH
Confidence 568899999999998633222111222222211111356666666 99997432 222 3
Q ss_pred HHHHHHHHhCCc--eE--EEecCCCCCCHHHHHHHHHHHHcC
Q 028239 142 QGEELRKQIGAA--AY--IECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 142 ~~~~~~~~~~~~--~~--~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+...+.+..+.. ++ +++||+++.|++++|+++.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 345566666541 13 789999999999999999998865
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=2.3e-21 Score=157.68 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=105.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeeeee-EEEEE-------------C--C----eEEE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFS-ANVAV-------------D--G----SIVN 55 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~ 55 (211)
|++...++|+++|++++|||||+++|.+.. +.....+ |....+. ..+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 466778999999999999999999998543 2222222 2221111 11111 1 1 1377
Q ss_pred EEEEeCCCCcCccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239 56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD 131 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 131 (211)
+.+||+||++.|...+...+..+|++++|+|++++ ++.+.+ . .+.. ....|+++|+||+|+.....
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~-l~~~~iivv~NK~Dl~~~~~---- 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEI-LGIDKIIIVQNKIDLVDEKQ---- 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHH-TTCCCEEEEEECTTSSCTTT----
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHH-cCCCeEEEEEEccCCCCHHH----
Confidence 88999999999888777778899999999999864 444433 2 2222 22358999999999976431
Q ss_pred ccCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 132 HVGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.....+++.++++.+ ...+++++||++|.|+++++++|.+.+...
T Consensus 153 ----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 153 ----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp ----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred ----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 012345556666543 234899999999999999999999877654
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=6.6e-22 Score=166.74 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=114.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC-----CCCCce------eeee---eEEEEE---CCeEEEEEEEeCCCCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DYIPTV------FDNF---SANVAV---DGSIVNLGLWDTAGQE 65 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~~~~t~------~~~~---~~~~~~---~~~~~~l~l~D~~G~~ 65 (211)
+..+|+|+|++++|||||+++|+... +.. ....+. +..+ ...+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 211 111110 1111 112222 4567899999999999
Q ss_pred CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
+|...+...++.+|++|+|+|+++..+.+.. ..|...... ++|+++|+||+|+...+ ......+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------~~~v~~e 146 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------PERVAEE 146 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------HHHHHHH
Confidence 9998888899999999999999998887776 666655432 78999999999997642 2233455
Q ss_pred HHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 146 LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 146 ~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+.+.++. .+++++||++|.|++++|+++.+.+....
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 6666654 24899999999999999999999887654
No 145
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=2.5e-21 Score=154.49 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=88.1
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCC
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RASYENVLKKWMPELRRF--APNVPIVLVGTKLD 121 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D 121 (211)
+.+++||++|++.++..|..++++++++|+|||+++ ..++.+. ..|+..+... .+++|+||++||+|
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChh
Confidence 778899999999999999999999999999999999 6789988 5565655543 26899999999999
Q ss_pred cccCcccc------ccccCCccccHHHHHHHHH-----------HhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 122 LREDRGYL------ADHVGSNVITTAQGEELRK-----------QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 122 l~~~~~~~------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+...+... .++..-..++.+++..++. ..+ ..+++|||+++.||.++|+++.+.+.+
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 96533110 0011011256777777662 223 478999999999999999999998864
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=1e-23 Score=175.44 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=113.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF 81 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 81 (211)
++.++|+++|++++|||||+++|.+..+.....++. .......+.. ++ ..+.||||||++.|..++..+++.+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 356899999999999999999999766433333332 2222222333 23 3567999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH---HHHh-CCceEEE
Q 028239 82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL---RKQI-GAAAYIE 157 (211)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 157 (211)
++|+|+++....+.. ..| ..+... ++|+++|+||+|+...... .+.. +...+ +..+ +..++++
T Consensus 80 ILVVDa~dg~~~qt~-e~l-~~~~~~--~vPiIVViNKiDl~~~~~~--------~v~~-~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 80 ILVVAADDGVMKQTV-ESI-QHAKDA--HVPIVLAINKCDKAEADPE--------KVKK-ELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp EEECBSSSCCCHHHH-HHH-HHHHTT--TCCEEECCBSGGGTTTSCC--------SSSS-HHHHTTSCCCCSSSSEEECC
T ss_pred EEEEECCCCccHHHH-HHH-HHHHHc--CCcEEEEEecccccccchH--------HHHH-HHHhhhhhHHhcCCCceEEE
Confidence 999999997766664 333 333333 7899999999999754320 0111 11111 1111 1248999
Q ss_pred ecCCCCCCHHHHHHHHHHHHcC
Q 028239 158 CSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 158 ~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+||++|.|++++|+++...+..
T Consensus 147 vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHTT
T ss_pred EECCCCCCchhHHHHHHHhhhc
Confidence 9999999999999999988753
No 147
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=6.3e-22 Score=155.92 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=94.7
Q ss_pred EEEEEEEeCCCCcCccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-hC-CCCcEEEEeeCC
Q 028239 53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SRASYENVLKKWMPELRR-FA-PNVPIVLVGTKL 120 (211)
Q Consensus 53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~ 120 (211)
.+.+++||++|++++++.|..++++++++|+|||++ +..++.+. ..|+..+.. .. +++|++|++||+
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECc
Confidence 377889999999999999999999999999999998 67888888 455554443 22 689999999999
Q ss_pred CcccCcccc------ccccCCccccHHHHHHHHHH-h-------------------------CCceEEEecCCCCCCHHH
Q 028239 121 DLREDRGYL------ADHVGSNVITTAQGEELRKQ-I-------------------------GAAAYIECSSKTQQNVKA 168 (211)
Q Consensus 121 Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~sa~~~~~v~~ 168 (211)
|+...+... .++. ....+.+++.++... + ..+.+++|||++..||..
T Consensus 239 DL~~eki~~~~l~~~fp~y-~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEY-TGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTC-CCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhh-cCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 987543211 1111 112356666554433 2 124789999999999999
Q ss_pred HHHHHHHHHcC
Q 028239 169 VFDTAIKVVLQ 179 (211)
Q Consensus 169 lf~~l~~~~~~ 179 (211)
+|+.+.+.+++
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=1.3e-21 Score=162.02 Aligned_cols=157 Identities=20% Similarity=0.153 Sum_probs=110.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC----C---CCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK----F---PTDY-IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR 76 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~----~---~~~~-~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~ 76 (211)
+.++|+++|++++|||||+++|.+.. . .... .+.+.+.....+.+++ +.+.+|||||+++|...+...+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 57899999999999999999999765 1 1111 1111111222344566 56779999999998888888899
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-C-
Q 028239 77 GADIFVLAFSLISR---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-G- 151 (211)
Q Consensus 77 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 151 (211)
.+|++++|+|+++. ++.+.+ ..+... ++|+++|+||+|+.+... .....++..+++... +
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l-----~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHM-----LILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHH-----HHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSG
T ss_pred hCCEEEEEEecCCCccHHHHHHH-----HHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccc
Confidence 99999999999884 444433 233333 788899999999975321 012234455555554 2
Q ss_pred -CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 152 -AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 152 -~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
..+++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 248999999999999999999999774
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=3.9e-23 Score=169.47 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=101.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc--------Ccccccccccc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE--------DYSRLRPLSYR 76 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~~~~ 76 (211)
++|+++|.+|+|||||+|+|.+..+ ...+.+++.+.....+..++ ..+.+|||||++ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 6899999999999999999998764 34444554444444444555 457799999986 34455666789
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.+|++++|+|++++.+..+ ..+...+.. .+.|+++|+||+|+...... ..++. ..+..+++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~--------------~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN--------------IYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C--------------CCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh--------------HHHHH-HcCCCCeE
Confidence 9999999999998877665 345455544 38999999999998754210 01111 23444789
Q ss_pred EecCCCCCCHHHHHHHHHHHHcC
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
++||++|.|+.++++++.+.+.+
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEeCcCCCChHHHHHHHHHhcCc
Confidence 99999999999999999988853
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=143.43 Aligned_cols=168 Identities=16% Similarity=0.112 Sum_probs=106.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEeCCCCcC-----------cc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---TVFDNFSANVAVDGSIVNLGLWDTAGQED-----------YS 68 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~ 68 (211)
....++|+|+|.+|+|||||+++|++..+.....+ ++.......+.+++. .+.||||||... +.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence 34679999999999999999999999886444333 223334455666774 566999999532 33
Q ss_pred ccccccccCCcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 69 RLRPLSYRGADIFVLAFSLISRASY--ENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
..+...++.+|++|+|+|++..... ..+ ..+...+... ...|+++|+||+|+...... .+... ...+..+++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~--~~~i~--~~~~~l~~l 177 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLGDTNL--HDYLR--EAPEDIQDL 177 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCCcccH--HHHHH--hchHHHHHH
Confidence 3344456789999999998764432 222 2333222221 24699999999998654320 00000 012456778
Q ss_pred HHHhCCceEEEecCCCC-----CCHHHHHHHHHHHHcC
Q 028239 147 RKQIGAAAYIECSSKTQ-----QNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 147 ~~~~~~~~~~~~sa~~~-----~~v~~lf~~l~~~~~~ 179 (211)
.+..+. .|+.+++..+ .++.++|+.+.+.+.+
T Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 178 MDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 888887 7888877654 6899999988887754
No 151
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=1.7e-20 Score=150.01 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=109.6
Q ss_pred eE-EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC---------ccccccccc
Q 028239 7 IK-CVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED---------YSRLRPLSY 75 (211)
Q Consensus 7 ~~-I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~~ 75 (211)
++ |+++|++|+|||||+++|.+..+ ...+..++.+.....+.+++. .+.+|||+|... +...++ .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 99999999999999999998764 233444555566677788884 567999999632 222222 46
Q ss_pred cCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-C
Q 028239 76 RGADIFVLAFSLISRA--SYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-G 151 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (211)
..+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+..... ......+..++..+ .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence 8899999999998876 45554 66666666544 5789999999999865321 00112333344554 2
Q ss_pred -CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 152 -AAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 152 -~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
..+++++||+++.|++++++.|.+.+..
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 2368999999999999999999987754
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.9e-21 Score=142.34 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=85.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccC---
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRG--- 77 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~--- 77 (211)
.+.++|+++|++|+|||||+++|.+..+... +.++.. .+...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4578999999999999999999999876441 111111 11133567799999999998888777765
Q ss_pred -CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCcEEEEeeCCCcccCc
Q 028239 78 -ADIFVLAFSLI-SRASYENVLKKWMPELRRF-----APNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 78 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~ 126 (211)
+|++++|||++ +..++..+ ..|+..+... .++.|+++|+||+|+....
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 89999888 5555444332 2589999999999997654
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.7e-20 Score=153.81 Aligned_cols=160 Identities=15% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------------CCceeeeeeEEEEEC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY------------------------------IPTVFDNFSANVAVD 50 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~ 50 (211)
....++|+++|++++|||||+++|+... +.... .+.+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3467899999999999999999996532 11111 111122222233344
Q ss_pred CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239 51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---YE---NVLKKWMPELRRFAPNVP-IVLVGTKLDLR 123 (211)
Q Consensus 51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 123 (211)
+ ..+.||||||+++|...+...++.+|++++|+|+++... |. .. ......+... ++| +|+|+||+|+.
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDP 168 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCc
Confidence 4 577899999999999888888999999999999988642 11 11 1222222222 566 99999999985
Q ss_pred cCccccccccCCccccHHHHHHHHHHhCC-----ceEEEecCCCCCCHHHHHH
Q 028239 124 EDRGYLADHVGSNVITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 171 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~lf~ 171 (211)
..... + .......++...+++..+. .+++++||++|.|+.++++
T Consensus 169 ~~~~~---~-~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWS---N-ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchH---H-HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 42100 0 0000123344555555553 4799999999999999655
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=2.3e-21 Score=158.88 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=105.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------------CCceeeeeeEEEE
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY------------------------------IPTVFDNFSANVA 48 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~ 48 (211)
|+....++|+++|++++|||||+++|+.. .+.... .+.+.+.....+.
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 56678899999999999999999999864 332111 0111111111222
Q ss_pred ECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHH------HHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239 49 VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVL------KKWMPELRRFAPNVPIVLVGTKLDL 122 (211)
Q Consensus 49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~p~ivv~nK~Dl 122 (211)
..+ +.+.||||||+++|...+..+++.+|++|+|+|+++ .+|+... ......+... ...|+++++||+|+
T Consensus 81 ~~~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl 156 (435)
T 1jny_A 81 TKK--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDL 156 (435)
T ss_dssp CSS--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGG
T ss_pred cCC--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccC
Confidence 333 567899999999999888889999999999999998 5666430 1222222222 22468999999999
Q ss_pred ccCccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHHHH
Q 028239 123 REDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVFD 171 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~lf~ 171 (211)
.+.... + .......++..+++..++. .+++++||++|.|+.+++.
T Consensus 157 ~~~~~~---~-~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 157 TEPPYD---E-KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSSTTC---H-HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCcccc---H-HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 762100 0 0001234566777777762 4899999999999986543
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=4.7e-21 Score=155.81 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCCcC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSN--------KFPTD--YIP-----TVFDNF-SANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~--------~~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
+...++|+++|++++|||||+++|.+. .+... ... +.+..+ .....++.....+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456789999999999999999999873 11110 000 001111 12222332335677999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE 145 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
|...+...++.+|++|+|+|+++....+. ..++..+... ++| +++++||+|+..... ......++..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~ 156 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD 156 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence 98888888999999999999998765544 3454555544 778 899999999974221 00012345666
Q ss_pred HHHHhCC----ceEEEecCCCCCC------------------HHHHHHHHHHHHcCC
Q 028239 146 LRKQIGA----AAYIECSSKTQQN------------------VKAVFDTAIKVVLQP 180 (211)
Q Consensus 146 ~~~~~~~----~~~~~~sa~~~~~------------------v~~lf~~l~~~~~~~ 180 (211)
+++.++. .+++++||++|.| +.++++.|.+.+...
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 7777663 5899999999987 788888888776543
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=2.3e-20 Score=151.97 Aligned_cols=165 Identities=17% Similarity=0.158 Sum_probs=110.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeeeee-EEEEE-------------C--C----eEEEE
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFS-ANVAV-------------D--G----SIVNL 56 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~l 56 (211)
++...++|+++|++++|||||+++|.+.. +.....+ |....+. ..+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 45677999999999999999999998543 2222222 2221111 11110 1 1 13678
Q ss_pred EEEeCCCCcCccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239 57 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH 132 (211)
Q Consensus 57 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 132 (211)
.||||||++.|...+...+..+|++++|+|+++. ++.+.+ . .+... ...|+++|+||+|+.....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~~~~----- 154 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVDKEK----- 154 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSCHHH-----
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCCHHH-----
Confidence 8999999999887777778889999999999864 344433 2 22222 2358999999999976431
Q ss_pred cCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 133 VGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.....+++.+++... ...+++++||++|.|+++++++|.+.+...
T Consensus 155 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 155 ---ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp ---HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ---HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 001233444555432 234899999999999999999999877654
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.8e-20 Score=158.16 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=107.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeeeeEEE-------------EECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANV-------------AVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~l~l~D~~G~~~ 66 (211)
.+.++|+++|++++|||||+++|++..+.... ..+.+..+.... .++.....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876543321 112111111000 0000112478999999999
Q ss_pred ccccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-----ccc--cCCc
Q 028239 67 YSRLRPLSYRGADIFVLAFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-----ADH--VGSN 136 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~--~~~~ 136 (211)
|..++...++.+|++|+|+|+++ +++++.+ . .+.. .++|+++++||+|+....... ... ....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999999 5555544 2 2333 379999999999996432100 000 0000
Q ss_pred cccH---H---HHHHHHHHh--------------CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 137 VITT---A---QGEELRKQI--------------GAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 137 ~~~~---~---~~~~~~~~~--------------~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
.+.. + +........ ...+++++||++|.|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0000 0 111111111 1248999999999999999999998764
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=2.5e-21 Score=149.61 Aligned_cols=162 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC-CCCCC-------CCcee-eeeeEEEEECCeEEEEEEEeCCCCcCcc----
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDY-------IPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYS---- 68 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~---- 68 (211)
.+...++|+|+|.+|+|||||+|+|++.. +...+ .+|.. ......+..++..+.+.+|||||.....
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 45567999999999999999999988765 33333 23332 2233344445666789999999974321
Q ss_pred ---ccc-------cccc-------------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 69 ---RLR-------PLSY-------------RGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 69 ---~~~-------~~~~-------------~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
.+. ..++ ..+|+++++++.+.. ..-.+ ..++..+.. +.|+++|+||+|+..
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLT 158 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSC
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCC
Confidence 111 1111 237799999876652 22222 345555544 799999999999864
Q ss_pred CccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
... .........+.....+. +++.+||.+++|+++++++|.+.+
T Consensus 159 ~~e--------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 159 PEE--------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHH--------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HHH--------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 321 00111234445555666 899999999999999999998865
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=2.6e-20 Score=155.41 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=83.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC------------------CCCC-----CCCceeeeeeEEEEECCeEEEEEEEeC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK------------------FPTD-----YIPTVFDNFSANVAVDGSIVNLGLWDT 61 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~------------------~~~~-----~~~t~~~~~~~~~~~~~~~~~l~l~D~ 61 (211)
+..+|+|+|++++|||||+++|+... ..+. ..+.........+...+ +.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 46799999999999999999997211 0000 00111111123344455 66789999
Q ss_pred CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
||+.+|...+..+++.+|++|+|+|+++..+.+.. ..| ..+... ++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999998877775 444 344443 7999999999998643
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=7.2e-22 Score=158.06 Aligned_cols=161 Identities=13% Similarity=0.143 Sum_probs=89.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCC--------Cceeee-eeEEEEECCeEEEEEEEeCCCC-------cC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYI--------PTVFDN-FSANVAVDGSIVNLGLWDTAGQ-------ED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~--------~t~~~~-~~~~~~~~~~~~~l~l~D~~G~-------~~ 66 (211)
...++|+|+|++|+|||||+++|++.. +...+. +|.... ....+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987654 333332 222222 2223344566788999999998 66
Q ss_pred cccccc-------ccccC-----------CcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239 67 YSRLRP-------LSYRG-----------ADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127 (211)
Q Consensus 67 ~~~~~~-------~~~~~-----------~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 127 (211)
+..++. .+++. +++.+++|++++ ..++..+...|+..+ ..++|+|+|+||+|+...+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence 666654 33333 223345666554 455555533444444 35799999999999976543
Q ss_pred ccccccCCccccH--HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 128 YLADHVGSNVITT--AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+.. .++.++++..+. +++++||+++.+ ++.|.++.+.+.+
T Consensus 192 ----------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 ----------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp ----------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 333 466667777776 999999999998 8888888877754
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=6.1e-20 Score=139.75 Aligned_cols=167 Identities=13% Similarity=0.099 Sum_probs=105.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEeCCCCc--------Cccccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---TVFDNFSANVAVDGSIVNLGLWDTAGQE--------DYSRLR 71 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~ 71 (211)
....++|+++|.+|+|||||+|++++..+.....+ ++..........++ ..+.||||||.. .+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 34679999999999999999999999875433222 22333344555666 456699999963 332222
Q ss_pred cccc----cCCcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCcEEEEeeCCCcccCccccccccCCccccHHHH
Q 028239 72 PLSY----RGADIFVLAFSLISRASYENVLKKWMPELRRF----APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG 143 (211)
Q Consensus 72 ~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (211)
...+ +.+|++|+|+|++...... ..++..+... ..+.|++|++||.|+...... +. .........
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~---~~-l~~~~~~~l 168 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH---DY-VSNTENRAL 168 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH---HH-HHHCCCHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH---HH-HhhcccHHH
Confidence 2223 8999999999998532221 2223333332 237899999999999653210 00 000011345
Q ss_pred HHHHHHhCCceEEEecCCC-----CCCHHHHHHHHHHHHcC
Q 028239 144 EELRKQIGAAAYIECSSKT-----QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~sa~~-----~~~v~~lf~~l~~~~~~ 179 (211)
+.+.+..+. .|+.+++.. +.++.+|++.+.+.+.+
T Consensus 169 ~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 169 RELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 777788876 677776655 57999999999888865
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=9.8e-21 Score=157.06 Aligned_cols=153 Identities=13% Similarity=0.100 Sum_probs=98.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEEECC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVAVDG 51 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (211)
...+||+++|.+++|||||+++|+... +... ..+...+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 457999999999999999999997651 1110 0011111111222333
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYEN-----VLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
.+.+.||||||+++|...+...++.+|++|+|+|++++.++.. ........+.. ....|+|||+||+|+.+.+
T Consensus 110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTC
T ss_pred -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccch
Confidence 3667899999999999988889999999999999998754321 10222222222 2245799999999997632
Q ss_pred cccccccCCccccH----HHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239 127 GYLADHVGSNVITT----AQGEELRKQIGA----AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 127 ~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l 169 (211)
. ... ++...+...++. .+|+++||++|.|++++
T Consensus 188 ~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 Q----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp H----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred H----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2 222 233344444442 48999999999999753
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=2.1e-20 Score=151.50 Aligned_cols=165 Identities=18% Similarity=0.124 Sum_probs=112.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-------CCCC--CCCce-----eeee-eEEEEECCeEEEEEEEeCCCCcCccc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK-------FPTD--YIPTV-----FDNF-SANVAVDGSIVNLGLWDTAGQEDYSR 69 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~-------~~~~--~~~t~-----~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~ 69 (211)
..++|+++|++++|||||+++|.+.. +... ...+. +... .....++...+.+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998731 1110 00000 0011 11122322335677999999999888
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.+...++.+|++|+|+|+++....+.. ..| ..+... ++| +++++||+|+..... ......++..++++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT 150 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence 777889999999999999987655543 344 444443 788 689999999975221 00012345667777
Q ss_pred HhCC----ceEEEecCCCCCC----------HHHHHHHHHHHHcCC
Q 028239 149 QIGA----AAYIECSSKTQQN----------VKAVFDTAIKVVLQP 180 (211)
Q Consensus 149 ~~~~----~~~~~~sa~~~~~----------v~~lf~~l~~~~~~~ 180 (211)
.++. .+++++||++|.| +.++++.|.+.+..+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 7763 4899999999764 899999998877543
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=2.1e-21 Score=160.37 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=106.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 82 (211)
.+..+|+++|++++|||||+++|.+..+.....+ .+.......+..++ ..+.||||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987654332221 11111112233344 35679999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-ccccCCccccHHHHHHHHHHhC-CceEEEecC
Q 028239 83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-ADHVGSNVITTAQGEELRKQIG-AAAYIECSS 160 (211)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa 160 (211)
+|+|+++....+.. ..| ..+.. .+.|+++++||+|+....... ......... +++.++ ..+++++||
T Consensus 80 LVVda~~g~~~qT~-e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~-------~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-EAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGI-------LPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEEETTTBSCTTTH-HHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCC-------CTTCCSSSCEEEECCT
T ss_pred EEeecccCccHHHH-HHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhh-------hHHHhCCCccEEEEee
Confidence 99999884332222 222 22222 378999999999997532111 011000000 111222 248999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028239 161 KTQQNVKAVFDTAIKV 176 (211)
Q Consensus 161 ~~~~~v~~lf~~l~~~ 176 (211)
++|.|++++|+++...
T Consensus 149 ktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 149 KAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTCTTHHHHTTTT
T ss_pred eeccCcchhhhhhhhh
Confidence 9999999999998754
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=8.8e-20 Score=149.48 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=102.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CCCceeeee----------------------eEEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTVFDNF----------------------SANVAV 49 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~----------~~~t~~~~~----------------------~~~~~~ 49 (211)
...++|+++|++++|||||+++|+... +... ..++.+..+ ...+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999998653 1111 112211100 011222
Q ss_pred CCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-cEEEEeeCCCcccCccc
Q 028239 50 DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV-PIVLVGTKLDLREDRGY 128 (211)
Q Consensus 50 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~ 128 (211)
++ ..+.+|||||+++|...+...+..+|++|+|+|++++...+. ..++..+... +. |+++|+||+|+.+....
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence 33 567899999999998888888999999999999998754443 3333444333 44 69999999999763210
Q ss_pred cccccCCccccHHHHHHHHHHhC--C--ceEEEecCCCCCCHHHH
Q 028239 129 LADHVGSNVITTAQGEELRKQIG--A--AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~sa~~~~~v~~l 169 (211)
......++..++++.++ . .+++++||++|.|++++
T Consensus 176 ------~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 ------VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ------HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ------HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 00012345666777776 1 48999999999999884
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=2.9e-21 Score=159.27 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=100.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC--------CcCccccccccc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAG--------QEDYSRLRPLSY 75 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G--------~~~~~~~~~~~~ 75 (211)
..+|+++|.+|+|||||+|+|.+..+. ..+++++.+.....+...+ ..+.+||||| ++.+...+..++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 469999999999999999999987642 3334444443333333344 4677999999 455556667778
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY 155 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
+.+|++|+|+|..+..+..+ ..+...+.. .+.|+++|+||+|+..... ...++ ...+....
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~ 161 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP 161 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence 89999999999887655444 344455554 3899999999999864321 01111 12233356
Q ss_pred EEecCCCCCCHHHHHHHHHHHHc
Q 028239 156 IECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 156 ~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+++||++|.|+.++++.+.+.+.
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGG
T ss_pred EEeecccccchHHHHHHHHhhcc
Confidence 79999999999999999988764
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=2.9e-20 Score=149.05 Aligned_cols=147 Identities=14% Similarity=0.056 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (211)
+|+++|++++|||||+++|+.. +.+.+.....+..++ +.+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~-------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK-------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE-------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC-------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999811 111111112233334 457899999999998777777899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhCCCCcE-EEEee-CCCcccCccccccccCCcccc--HHHHHHHHHHhC--CceEEE--ec
Q 028239 88 ISRASYENVLKKWMPELRRFAPNVPI-VLVGT-KLDLREDRGYLADHVGSNVIT--TAQGEELRKQIG--AAAYIE--CS 159 (211)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~--~s 159 (211)
+... +... ..+...+... ++|. ++++| |+|+ +.+. +. .++..++++..+ ..++++ +|
T Consensus 93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----------~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA----------IDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH----------HHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH----------HHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 5433 3333 4455555544 6777 88999 9999 4321 22 244555555443 258999 99
Q ss_pred CCC---CCCHHHHHHHHHHHHcC
Q 028239 160 SKT---QQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 160 a~~---~~~v~~lf~~l~~~~~~ 179 (211)
|++ +.|++++++.|.+.+..
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhccc
Confidence 999 99999999999988744
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=7.1e-21 Score=157.11 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=91.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------C------CCCceeeeeeEEEEEC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTS--NKFPT------------------------D------YIPTVFDNFSANVAVD 50 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~------------------------~------~~~t~~~~~~~~~~~~ 50 (211)
....++|+++|++++|||||+++|+. +.+.. + ..+.+.......+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 45678999999999999999999975 22211 0 0000101111123334
Q ss_pred CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh---hHHH---HHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239 51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA---SYEN---VLKKWMPELRRFAPNVP-IVLVGTKLDLR 123 (211)
Q Consensus 51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 123 (211)
+ ..+.||||||+++|...+...+..+|++|+|+|+++.. +|+. ....+ ..... .++| +|||+||+|+.
T Consensus 120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDEP 194 (467)
T ss_dssp S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTST
T ss_pred C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH--cCCCEEEEEEECccCC
Confidence 4 56779999999999998888899999999999999863 2221 10222 22222 2677 99999999996
Q ss_pred cCccccccccCCccccHHHHHHHHHHh-CC-----ceEEEecCCCCCCHHHHH
Q 028239 124 EDRGYLADHVGSNVITTAQGEELRKQI-GA-----AAYIECSSKTQQNVKAVF 170 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~sa~~~~~v~~lf 170 (211)
.... .. ........+...+++.. +. .+++++||++|.|+.++|
T Consensus 195 ~~~~---~~-~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQW---SE-ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSS---CH-HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred Cccc---cH-HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 4210 00 00002234556666665 32 379999999999998765
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=4.1e-20 Score=152.27 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=103.8
Q ss_pred CC-CCceeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEE
Q 028239 1 MS-ASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------------------YIPTVFDNFSANV 47 (211)
Q Consensus 1 m~-~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~ 47 (211)
|. ....++|+++|++++|||||+++|+.. .+... ..+.+.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 54 346789999999999999999999864 22210 0111111111223
Q ss_pred EECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh---hH----HHHHHHHHHHHhhhCCCCc-EEEEeeC
Q 028239 48 AVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA---SY----ENVLKKWMPELRRFAPNVP-IVLVGTK 119 (211)
Q Consensus 48 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~ivv~nK 119 (211)
..++ +.+.||||||+++|...+...+..+|++|+|+|+++.. +| +.. ..+ ..+... ++| +|+|+||
T Consensus 81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~-~~~~~~--~v~~iivviNK 154 (458)
T 1f60_A 81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHA-LLAFTL--GVRQLIVAVNK 154 (458)
T ss_dssp ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHH-HHHHHT--TCCEEEEEEEC
T ss_pred ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHH-HHHHHc--CCCeEEEEEEc
Confidence 3344 56889999999999988888899999999999998763 22 332 222 233332 565 8999999
Q ss_pred CCcccCccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l 169 (211)
+|+...... ......++...+++.++. .+++++||++|.|+.++
T Consensus 155 ~Dl~~~~~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHH------HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999742110 000123455666677763 48999999999998744
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=153.79 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=101.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--CCC------------------------------CCCceeeeeeEEEEECC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTD------------------------------YIPTVFDNFSANVAVDG 51 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (211)
...++|+++|++++|||||+++|+.... ... ..+++.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4578999999999999999999986531 110 01222222222333444
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---Y---ENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+.+.||||||+++|...+...++.+|++|+|+|++++.. + ... ......+... ...|+|||+||+|+...
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccch
Confidence 567799999999999988889999999999999987531 1 111 1112222222 23459999999999763
Q ss_pred ccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239 126 RGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV 169 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l 169 (211)
... .......+...+....+. .+++++||++|.|+.++
T Consensus 321 ~~~------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHH------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHH------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 210 000112334445555543 48999999999999876
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=8e-20 Score=161.33 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=112.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC-------CCC--CCC-----Cceeeee-eEEEEECCeEEEEEEEeCCCCcCc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-------FPT--DYI-----PTVFDNF-SANVAVDGSIVNLGLWDTAGQEDY 67 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------~~~--~~~-----~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~ 67 (211)
....++|+++|++++|||||+++|.+.. +.. ... .+.+.++ ...+.++...+.+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457899999999999999999998631 100 000 0111111 011223333356789999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146 (211)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
...+...++.+|++|+|+|+++....+.. .++..+... ++| +|+|+||+|+..... ......+++.++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~el 441 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVREL 441 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHH
Confidence 88888889999999999999987554443 333444444 788 789999999975321 000123556677
Q ss_pred HHHhCC----ceEEEecCCCC--------CCHHHHHHHHHHHHcCC
Q 028239 147 RKQIGA----AAYIECSSKTQ--------QNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 147 ~~~~~~----~~~~~~sa~~~--------~~v~~lf~~l~~~~~~~ 180 (211)
++.++. .+++++||++| .|+.++++.|.+.+..+
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 777763 58999999999 46899999988876543
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=2.6e-20 Score=145.50 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=100.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC------CCc-----------------------eeee-------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IPT-----------------------VFDN------------- 42 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~------~~t-----------------------~~~~------------- 42 (211)
..++|+|+|.+|+|||||+++|++..+.+.. .++ ..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999998863211 121 0000
Q ss_pred --------eeEEEEEC-CeEEEEEEEeCCCCcC-------------ccccccccccCCcEEE-EEEECCChhhHHHHHHH
Q 028239 43 --------FSANVAVD-GSIVNLGLWDTAGQED-------------YSRLRPLSYRGADIFV-LAFSLISRASYENVLKK 99 (211)
Q Consensus 43 --------~~~~~~~~-~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 99 (211)
....+.+. .....+.||||||... +...+..+++.++.++ +|+|+++..+..+. ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 00000000 0025678999999643 2334455777888666 79999876554443 34
Q ss_pred HHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH--HHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 100 WMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL--RKQIGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 100 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
+...+... +.|+++|+||+|+..... ...+..... ....+..+++++||++|.|++++|+.+.+
T Consensus 184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 55555433 789999999999976432 111111110 00112247889999999999999999877
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=3.3e-19 Score=132.14 Aligned_cols=162 Identities=14% Similarity=0.001 Sum_probs=100.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCc----------cccc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDY----------SRLR 71 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~ 71 (211)
-....+|+++|++|+|||||++++.+..+.....++.+... ...+.+++ .+.+||+||.... ....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998764433344443322 22333333 3569999997432 1111
Q ss_pred cccc---cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239 72 PLSY---RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK 148 (211)
Q Consensus 72 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
..++ ..++++++|+|++++.+..+. .+...+... +.|+++++||+|+..... +......+..++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence 2233 578999999999887665431 222233332 789999999999865321 0012345555665
Q ss_pred HhC-CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 149 QIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 149 ~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
+.. ...++++||+++.|++++++.|.+.+.+
T Consensus 168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 554 2478899999999999999999887654
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=5.2e-19 Score=135.78 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=86.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR------ 76 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------ 76 (211)
+.++|+++|.+|+|||||+++|++..+ ...+.++........+..++. .+.||||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 579999999999999999999999873 445555554445555666774 6779999999888765544443
Q ss_pred ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-C--CCcEEEEeeCCCcccC
Q 028239 77 ---GADIFVLAFSLISRASYENVLKKWMPELRRFA-P--NVPIVLVGTKLDLRED 125 (211)
Q Consensus 77 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~ 125 (211)
.+|++++|++++... +......|+..+.... . ..|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 3333246666666543 2 2499999999998643
No 175
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.79 E-value=7.1e-20 Score=143.20 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=109.9
Q ss_pred HHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHH
Q 028239 21 CMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLK 98 (211)
Q Consensus 21 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 98 (211)
+|+.++..+.|. ..+.+|.++.+...+..++ .+++||+ +++++.++..+++++|++|+|||+++++ ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 678888888888 8888998877664433333 5789999 9999999999999999999999999997 67777 8
Q ss_pred HHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHH
Q 028239 99 KWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 99 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
.|+..+.. .++|+++|+||+|+.+.+. + +++.++++.++. .+++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887765 3899999999999976432 2 456677777762 38999999999999999987654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.1e-18 Score=149.58 Aligned_cols=116 Identities=18% Similarity=0.084 Sum_probs=81.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----------------e-eeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----------------F-DNFSANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
.+..+|+|+|+.|+|||||+++|++........++. + ........+....+.+++|||||+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999998533211111100 0 11112222222236788999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
|...+..+++.+|++++|+|+++....+.. .++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888889999999999999887665553 444444443 79999999999986
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=2.6e-19 Score=151.41 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=88.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEEECC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVAVDG 51 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (211)
...++|+++|++++|||||+++|+... +... ..+++.......+..+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 457899999999999999999996421 1100 0011111111122223
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh---hH----HHHHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA---SY----ENVLKKWMPELRRFAPNVP-IVLVGTKLDLR 123 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 123 (211)
.+.+.||||||+++|...+...+..+|++|+|+|++++. .+ +. ......+... ++| +|||+||+|+.
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt--~e~l~~~~~l--gip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT--REHAYLLRAL--GISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSH--HHHHHHHHHS--SCCCEEEEEECGGGG
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHH--HHHHHHHHHc--CCCeEEEEEeccccc
Confidence 366789999999999998888999999999999998642 11 11 1112222222 565 99999999997
Q ss_pred cCccccccccCCccccHHHHHHHH-HHhCC----ceEEEecCCCCCCHH--------------HHHHHHHHHH
Q 028239 124 EDRGYLADHVGSNVITTAQGEELR-KQIGA----AAYIECSSKTQQNVK--------------AVFDTAIKVV 177 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~sa~~~~~v~--------------~lf~~l~~~~ 177 (211)
..... .......+...+. ...+. .+++++||++|.|+. .|++.|...+
T Consensus 329 ~~~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 329 SWSED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TTCHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cccHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 52210 0001122333333 33343 379999999999998 6777766543
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=1.5e-17 Score=138.90 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=79.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------C--CCCc----------eeeee---eEEEEECCeEEEEEEEeC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT------D--YIPT----------VFDNF---SANVAVDGSIVNLGLWDT 61 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~------~--~~~t----------~~~~~---~~~~~~~~~~~~l~l~D~ 61 (211)
+..+|+++|++++|||||+++|+... +.. . ...+ .+... ...+...+ +.+.||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 56899999999999999999998632 100 0 0000 01111 12233444 67789999
Q ss_pred CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
||+.+|...+..+++.+|++|+|+|+++...... ..+...+.. .++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 9999999888888999999999999988754433 333333333 37999999999998654
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2.3e-19 Score=140.20 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=87.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCCCCC--------Ccee-eeeeEEEEECCeEEEEEEEeCCCC-------cCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN-KFPTDYI--------PTVF-DNFSANVAVDGSIVNLGLWDTAGQ-------EDY 67 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~-~~~~~~~--------~t~~-~~~~~~~~~~~~~~~l~l~D~~G~-------~~~ 67 (211)
..++|+|+|++|+|||||+++|++. .++.... ++.. ......+..++....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998875 4433321 1111 111222233455578899999998 555
Q ss_pred ccccc-------ccccC-------------CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239 68 SRLRP-------LSYRG-------------ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127 (211)
Q Consensus 68 ~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 127 (211)
..... .+++. +++++++.+.+. .++..... +.+....++.|+++|+||.|+...+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 54433 22221 233444443322 23333312 33333345789999999999875432
Q ss_pred ccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.....+++.++++..+. +|+++||+++ +++++|..+.+.+...
T Consensus 173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 01234677888899887 9999999999 9999999999988653
No 180
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.76 E-value=6.1e-18 Score=136.04 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=105.3
Q ss_pred CCCCCCceeeee----------eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hh
Q 028239 32 PTDYIPTVFDNF----------SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RA 91 (211)
Q Consensus 32 ~~~~~~t~~~~~----------~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~ 91 (211)
.+.|.||..+.+ ...+.+++ +.+++||++|++.+++.|..++++++++|+|||+++ ..
T Consensus 187 ~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n 264 (402)
T 1azs_C 187 QDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN 264 (402)
T ss_dssp CTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB
T ss_pred ccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccc
Confidence 456777653222 12345555 788899999999999999999999999999999999 88
Q ss_pred hHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCcc---ccc-----cccC-----------Ccc-ccHHHHHHHH--
Q 028239 92 SYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRG---YLA-----DHVG-----------SNV-ITTAQGEELR-- 147 (211)
Q Consensus 92 s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~---~~~-----~~~~-----------~~~-~~~~~~~~~~-- 147 (211)
+|.++ ..|+..+... .+++|++||+||+|+...+. ... ++.. ... .+.+++..++
T Consensus 265 s~~e~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~ 343 (402)
T 1azs_C 265 RLQEA-LNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 343 (402)
T ss_dssp HHHHH-HHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHH
Confidence 99998 7777777654 36899999999999865432 100 0000 000 1245555553
Q ss_pred ---HHh-------CCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 148 ---KQI-------GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 148 ---~~~-------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
+.. ..+.+++|||+++.||.++|.++.+.+....
T Consensus 344 kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 344 EFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 221 2346789999999999999999988886543
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=2.3e-18 Score=148.10 Aligned_cols=173 Identities=10% Similarity=0.106 Sum_probs=108.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcee--------eeeeEEEEE--------------------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVF--------DNFSANVAV-------------------------- 49 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~--------~~~~~~~~~-------------------------- 49 (211)
..++|+|+|.+|+|||||+|+|++..+.. ...+++. .....+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999876322 2222220 000001111
Q ss_pred --------------------CCeE--EEEEEEeCCCCcC---ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 028239 50 --------------------DGSI--VNLGLWDTAGQED---YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPEL 104 (211)
Q Consensus 50 --------------------~~~~--~~l~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (211)
+... ..+.||||||... ....+..+++.+|++++|+|++++.+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0000 2477999999644 233455678899999999999998888776 6665555
Q ss_pred hhhCCCCcEEEEeeCCCcccCccccccccCCccc--cHHHHHH-----HHHHhC-------CceEEEecCC---------
Q 028239 105 RRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVI--TTAQGEE-----LRKQIG-------AAAYIECSSK--------- 161 (211)
Q Consensus 105 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~sa~--------- 161 (211)
... +.|+++|+||+|+...... ........ ....... +....+ ..+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 433 6789999999998654310 00000000 0001111 111111 1368999999
Q ss_pred -----CCCCHHHHHHHHHHHHcCCch
Q 028239 162 -----TQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 162 -----~~~~v~~lf~~l~~~~~~~~~ 182 (211)
++.|++++++.+.+.+.....
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred chhhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999998865443
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=1.5e-17 Score=143.11 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=83.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC--CC------CC-----C------CCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN--KF------PT-----D------YIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~--~~------~~-----~------~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~ 64 (211)
.+..+|+|+|++|+|||||+++|+.. .+ .+ + ....+.......+...+ +.++||||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 46789999999999999999999842 11 00 0 00011111112333444 67889999999
Q ss_pred cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
.+|...+..+++.+|++|+|+|+++..+.+.. ..|.. +... +.|+++|+||+|+...
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence 99998888899999999999999998888776 55554 3333 8999999999998654
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=6.4e-18 Score=130.24 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=82.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc---------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL--------- 73 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~--------- 73 (211)
..++|+++|.+|+|||||+++|++..+. ..+.++........+..++ +.+.||||||...+......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5799999999999999999999988752 3334443333333444455 56779999999776543321
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC-C--CcEEEEeeCCCcccCc
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLREDR 126 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ivv~nK~Dl~~~~ 126 (211)
..+.+|++++|+|++.. ++......|+..+..... + .|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 13479999999998653 343332466666665432 2 6999999999986543
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=3.3e-17 Score=140.92 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=84.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTS--NKFPT-----------DY------IPTVFDNFSANVAVDGSIVNLGLWDTAG 63 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~l~D~~G 63 (211)
..+..+|+|+|++|+|||||+++|+. +.+.. ++ ..++.......+..++ +.++||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 35678999999999999999999985 22210 00 0111111122344455 6678999999
Q ss_pred CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+.+|...+..+++.+|++++|+|+++..+.+.. ..|.. +... +.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHHc--CCCEEEEEECCCcccc
Confidence 999998888889999999999999998887775 55543 4443 7999999999998653
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=1.7e-17 Score=134.49 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=107.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc----ccccccc---ccCCc
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY----SRLRPLS---YRGAD 79 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~~~~~---~~~~d 79 (211)
.|+|+|++|+|||||++++.+... ...+..++.......+..++ ...+.+||+||.... ..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999988642 12233333222223344443 234679999997432 2222222 35699
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239 80 IFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI 156 (211)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.++.|+|++ ...+.++ ..|...+.... ...|.++|+||+|+... . ...+..+..+..+. +++
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi 302 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL 302 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence 999999998 5556665 56655555543 36899999999998653 1 22333444444455 899
Q ss_pred EecCCCCCCHHHHHHHHHHHHcCCch
Q 028239 157 ECSSKTQQNVKAVFDTAIKVVLQPPR 182 (211)
Q Consensus 157 ~~sa~~~~~v~~lf~~l~~~~~~~~~ 182 (211)
.+||++++|++++++++.+.+.+...
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEECCCccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999976543
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=8.9e-17 Score=138.43 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=83.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC-----------C------CCceeeeeeEEEEEC-----CeEEEEEEE
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD-----------Y------IPTVFDNFSANVAVD-----GSIVNLGLW 59 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~-----------~------~~t~~~~~~~~~~~~-----~~~~~l~l~ 59 (211)
.+..+|+|+|+.++|||||+++|+... +... + .+.+.......+.++ +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997531 1110 0 000000001122222 344788999
Q ss_pred eCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 60 DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
||||+.+|...+...++.+|++|+|+|+++....+.. ..|. ..... ++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEeCCCcccc
Confidence 9999999998888899999999999999988766664 4443 33333 7999999999998653
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=134.93 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCC-------CCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccc------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDY-------IPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSR------ 69 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------ 69 (211)
-.++|+|+|++|+|||||+++|++..++ ..+ .++.. ......+...+....+++||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4578999999999999999999987653 211 11111 11111222234446788999999765311
Q ss_pred -------------------cccccccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239 70 -------------------LRPLSYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL 129 (211)
Q Consensus 70 -------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 129 (211)
+...++.++++.+++|..... .++......|+..+. .+.|+|+|+||+|+...+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e-- 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE-- 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH--
Confidence 122345666665666665443 344444235666554 3799999999999876443
Q ss_pred ccccCCccccH--HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 130 ADHVGSNVITT--AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 130 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+.. .++.+++...+. +++++|++++.++.++|..+...+.
T Consensus 185 --------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 --------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp --------HHHHHHHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred --------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 443 667778888887 8999999999999999988877653
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.71 E-value=3.3e-18 Score=134.53 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCcC-------------ccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239 54 VNLGLWDTAGQED-------------YSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTK 119 (211)
Q Consensus 54 ~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 119 (211)
..+.||||||... +...+..+++.+|++++|+|..+.. ...+. ..+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 4578999999754 2234455778999999999974332 11111 233344433 37899999999
Q ss_pred CCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC---C---CCCHHHHHHHHHHHHcCC
Q 028239 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK---T---QQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~v~~lf~~l~~~~~~~ 180 (211)
+|+..... ...+.........+ ..|+++++. + +.|+.++++.+.+.+...
T Consensus 208 ~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGT----------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSC----------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcch----------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99876432 11122111000111 256665554 4 789999999998888654
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=1.9e-17 Score=133.72 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=47.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEE---------------------EECC-eEEEEEEEeCCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANV---------------------AVDG-SIVNLGLWDTAG 63 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~---------------------~~~~-~~~~l~l~D~~G 63 (211)
++|+++|.+|+|||||+|+|++... ...++.++........ .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998762 2344444422222211 1232 247799999999
Q ss_pred CcC----cccccc---ccccCCcEEEEEEECCCh
Q 028239 64 QED----YSRLRP---LSYRGADIFVLAFSLISR 90 (211)
Q Consensus 64 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 90 (211)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222322 357899999999999875
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.71 E-value=6.9e-18 Score=135.15 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=97.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-e--e------------e---------------------------
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-D--N------------F--------------------------- 43 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~--~------------~--------------------------- 43 (211)
..+|+|+|++|+|||||+++|.+..+.+...++.. . . +
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 35999999999999999999999875332222110 0 0 0
Q ss_pred -----------eEEEEE-CCeEEEEEEEeCCCCcCc-------------cccccccccCCcEEEEEEECCChhhHHHHHH
Q 028239 44 -----------SANVAV-DGSIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISRASYENVLK 98 (211)
Q Consensus 44 -----------~~~~~~-~~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (211)
...+.+ ......+.+|||||...+ ......+++.+|++|+|+|..+.+... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence 000000 011134789999998776 334556789999999999876543322 2
Q ss_pred HHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHH
Q 028239 99 KWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 173 (211)
Q Consensus 99 ~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l 173 (211)
.|...+.... .+.|+++|+||+|+..... ...+....+....+. +|+++++..+.++++.+...
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 2333333333 3789999999999976543 333333333344454 89999999988877665543
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.68 E-value=1.4e-16 Score=118.99 Aligned_cols=156 Identities=18% Similarity=0.080 Sum_probs=95.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-------------eEEEEECC------------------eE
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-------------SANVAVDG------------------SI 53 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~ 53 (211)
+..+|+++|.+|+|||||+++|...........+..... .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999986521111000000000 00011111 12
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
+.+.+|||+|+...... +....+.+++|+|+++..... ..+...+ +.|+++|+||+|+.....
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchh------
Confidence 45679999995211111 112568899999987764321 1121221 578899999999865321
Q ss_pred CCccccHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239 134 GSNVITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~ 181 (211)
...++..+.++..+ ..+++++||++|.|++++|+++.+.+....
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 34555556665554 248999999999999999999999886543
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=6e-15 Score=117.20 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=57.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCcc--
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYS-- 68 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~-- 68 (211)
++|+++|.+|+|||||+++|.+..+ ...++.++.......+.+++. ...+++||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 7899999999999999999998763 334444443323334444442 1468899999988753
Q ss_pred --ccccc---cccCCcEEEEEEECCC
Q 028239 69 --RLRPL---SYRGADIFVLAFSLIS 89 (211)
Q Consensus 69 --~~~~~---~~~~~d~~i~v~d~~~ 89 (211)
.+... .++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23333 3689999999999975
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=2.4e-17 Score=123.54 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=93.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-------------EEEEEC-CeE-----------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------------ANVAVD-GSI----------------- 53 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~----------------- 53 (211)
+.++|+|+|.+|+|||||+++|....+...+.++....+. ..+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987655444444432221 222221 111
Q ss_pred --EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239 54 --VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD 131 (211)
Q Consensus 54 --~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 131 (211)
..+.++|++|.-... ..+-...+..+.+.|.......... +...+ ..|.++|+||+|+.....
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-----~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGIM-----KTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhHh-----hcCCEEEEeccccCchhH----
Confidence 134466666631111 0111233455677775332221110 01111 578899999999875432
Q ss_pred ccCCccccHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 132 HVGSNVITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
...++..++++..+ ..+++++||++|.|++++|+++.+.+.
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 45566666766653 348999999999999999999988764
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.64 E-value=4.6e-15 Score=124.41 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=81.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--C---------------CCCCCCce---eeee---eEEEEECCeEEEEEEEeC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNK--F---------------PTDYIPTV---FDNF---SANVAVDGSIVNLGLWDT 61 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~--~---------------~~~~~~t~---~~~~---~~~~~~~~~~~~l~l~D~ 61 (211)
+.=+|+|+|+.++|||||..+|+... + ..++.+.. +... ...+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 34589999999999999999996211 0 00111111 1111 22344555 66789999
Q ss_pred CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
||+.+|.......++-+|++|+|+|+...-.-+.. ..|. ..... ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~-~a~~~--~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMD-VCRMR--ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHH-HHHHh--CCceEEEEecccchh
Confidence 99999999999999999999999999998777765 5554 34444 899999999999754
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.63 E-value=3.4e-16 Score=125.02 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
+.+.||||||... ........+|++++|+|....+..+.+ . ......|+++|+||+|+.....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence 5677999999432 222345889999999998776655433 1 1112468999999999865321
Q ss_pred CCccccHHHHHHHHHH---hC------CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 134 GSNVITTAQGEELRKQ---IG------AAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~------~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
. .....++... .+ ..+++.+||++|.|+++++++|.+.+..
T Consensus 235 ----~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 ----A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ----H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1 1111222222 21 2489999999999999999999988754
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=6.8e-17 Score=129.03 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=92.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC------Ccee--------------------eee---------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVF--------------------DNF--------------- 43 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~------~t~~--------------------~~~--------------- 43 (211)
..++|+|+|.+++|||||+++|++..+.+... ++.. ..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999987642211 1100 000
Q ss_pred ---------eEEEEEC-CeEEEEEEEeCCCCcC-------------ccccccccccCCc-EEEEEEECCChhhHHHHHHH
Q 028239 44 ---------SANVAVD-GSIVNLGLWDTAGQED-------------YSRLRPLSYRGAD-IFVLAFSLISRASYENVLKK 99 (211)
Q Consensus 44 ---------~~~~~~~-~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 99 (211)
...+.+. .....+.||||||... +..+...++..++ ++++|.|++....-.+. ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 0001111 0124578999999643 2234444555555 55556666543222222 23
Q ss_pred HHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH--HHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 100 WMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE--ELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 100 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
+...+.. .+.|+++|+||+|+.+... ....... .+....+..+++.+||+++.|++++++.+.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444433 3789999999999976432 0111111 0011123346788999999999999998876
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.62 E-value=7.4e-16 Score=135.09 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------C---------C-Cceeee-eeEEEE------------ECC
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------Y---------I-PTVFDN-FSANVA------------VDG 51 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------~---------~-~t~~~~-~~~~~~------------~~~ 51 (211)
..+..+|+|+|++++|||||+++|+... +... . . .|.... ....+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456799999999999999999998641 1110 0 0 011100 111121 234
Q ss_pred eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
..+.++||||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|..... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 578899999999999999999999999999999999999888886 55654433 2789999999999863
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.60 E-value=9.6e-16 Score=128.64 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=77.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeee-eE----EEEECCe-----------------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP----TDYIPTVFDNF-SA----NVAVDGS----------------------- 52 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~-~~----~~~~~~~----------------------- 52 (211)
..++|+|+|.+|+|||||+|+|++..+. .....|..... .. .+..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 5689999999999999999999998763 22222211000 00 0000000
Q ss_pred E---------EEEEEEeCCCCcC-----------ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc
Q 028239 53 I---------VNLGLWDTAGQED-----------YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP 112 (211)
Q Consensus 53 ~---------~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 112 (211)
. ..+.||||||... +...+..++..+|++++|+|+++....... ..|+..+... +.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCC
Confidence 0 2477999999764 223444567889999999999885444444 5566655543 689
Q ss_pred EEEEeeCCCcccC
Q 028239 113 IVLVGTKLDLRED 125 (211)
Q Consensus 113 ~ivv~nK~Dl~~~ 125 (211)
+++|+||+|+...
T Consensus 221 vilVlNK~Dl~~~ 233 (550)
T 2qpt_A 221 IRVVLNKADMVET 233 (550)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEECCCccCH
Confidence 9999999998754
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.56 E-value=7e-14 Score=111.63 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=55.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECC-------------------eEEEEEEEeCCCCcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDG-------------------SIVNLGLWDTAGQED 66 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~l~D~~G~~~ 66 (211)
++|+++|.+|+|||||+++|.+.. ....++.++.........+.+ ....+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 689999999999999999998764 223333332211111222221 235688999999876
Q ss_pred ccc----ccc---ccccCCcEEEEEEECCC
Q 028239 67 YSR----LRP---LSYRGADIFVLAFSLIS 89 (211)
Q Consensus 67 ~~~----~~~---~~~~~~d~~i~v~d~~~ 89 (211)
+.+ +.. ..++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 542 222 23689999999999975
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=119.45 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
+.+.++||||.... .......+|.+++|+|++.+...+.+ .. .+ -..|.++|+||+|+.....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence 45679999995321 23346789999999999876543322 11 11 1457899999999864211
Q ss_pred CCccccHHHHHHHHHH---------hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 134 GSNVITTAQGEELRKQ---------IGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~---------~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
. ......+... ....+++.+||++|.|+++++++|.+.+.
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 1111222211 11237899999999999999999988763
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=2.7e-13 Score=117.20 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=79.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CCCceeeeee---------EEEEEC-----CeEEEEEEEeCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN--------KFPTD--YIPTVFDNFS---------ANVAVD-----GSIVNLGLWDTA 62 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~--------~~~~~--~~~t~~~~~~---------~~~~~~-----~~~~~l~l~D~~ 62 (211)
=+|+|+|+.++|||||..+|+.. ..... +..+...+.. ..+.+. ...+.++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 48999999999999999999731 11111 1111111111 122222 135889999999
Q ss_pred CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
||.+|.......++-+|++|+|+|+...-..+.. ..|...... ++|.++++||+|...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence 9999999999999999999999999988777765 555544433 799999999999743
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=2.2e-14 Score=109.76 Aligned_cols=118 Identities=12% Similarity=-0.002 Sum_probs=68.0
Q ss_pred EEEEEEeCCCCcCcccccc------ccccCCcEEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCcEEEEeeCCCccc
Q 028239 54 VNLGLWDTAGQEDYSRLRP------LSYRGADIFVLAFSLISRASYENVLKKW---MPELRRFAPNVPIVLVGTKLDLRE 124 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~Dl~~ 124 (211)
+.+.||||||......... ..+.. +++++++|.....+..+....+ ...... .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 4677999999865433221 13455 8888898875443333221111 111112 2789999999999865
Q ss_pred CccccccccCCccc-cHHH-HHH-----------------HHHHhCC-ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 125 DRGYLADHVGSNVI-TTAQ-GEE-----------------LRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 125 ~~~~~~~~~~~~~~-~~~~-~~~-----------------~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
.... .... ..+ .... ... +++.++. .+++++||+++.|++++++++.+.+
T Consensus 186 ~~~~--~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 186 EEEK--ERHR-KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHH--HHHH-HHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccH--HHHH-HHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 4210 0000 000 0000 000 1234443 3799999999999999999998876
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.50 E-value=5.6e-15 Score=117.34 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
+.+.||||||...... .....+|++++|+|.+..+.++.+ .. .. .+.|.++|+||+|+.....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~--~~-----~~~p~ivv~NK~Dl~~~~~------ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK--GL-----MEVADLIVINKDDGDNHTN------ 211 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH--HH-----HHHCSEEEECCCCTTCHHH------
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH--hh-----hcccCEEEEECCCCCChHH------
Confidence 5677999999654332 246899999999998765443222 11 01 1467899999999865321
Q ss_pred CCccccH--HHHHHHHHHhC------CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 134 GSNVITT--AQGEELRKQIG------AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~~------~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
+.. .+........+ ..+++++||++|.|++++++.|.+.+.
T Consensus 212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 12222222222 247899999999999999999998764
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=1.1e-14 Score=124.27 Aligned_cols=170 Identities=13% Similarity=0.092 Sum_probs=108.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc--CCC------CCC-----CCCce---eeee-e--EEEEECCeEEEEEEEeCCCCcCc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS--NKF------PTD-----YIPTV---FDNF-S--ANVAVDGSIVNLGLWDTAGQEDY 67 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~--~~~------~~~-----~~~t~---~~~~-~--~~~~~~~~~~~l~l~D~~G~~~~ 67 (211)
-+|+|+|+.++|||||..+|+. +.+ ... +.+.. +.+. . ..+.+++ +.++|+|||||.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 4799999999999999999973 111 111 01000 1111 1 1223344 66789999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc-----c-----------
Q 028239 68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA-----D----------- 131 (211)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~----------- 131 (211)
.......++-+|++++|+|+...-.-+.. ..|.. .... ++|.++++||+|....+-... .
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~-a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHA-LRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHH-HHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHH-HHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999999988666654 44543 4444 789999999999754321100 0
Q ss_pred -----ccC-CccccHHH-----------------------------HHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 132 -----HVG-SNVITTAQ-----------------------------GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 132 -----~~~-~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
... ......+. ...........|.+..||.++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 000 00000000 0001112234588899999999999999999998
Q ss_pred HcCCch
Q 028239 177 VLQPPR 182 (211)
Q Consensus 177 ~~~~~~ 182 (211)
+..+..
T Consensus 237 ~p~p~~ 242 (638)
T 3j25_A 237 FYSSTH 242 (638)
T ss_dssp CCCSGG
T ss_pred ccCccc
Confidence 766543
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6e-13 Score=106.27 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=94.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-------ccccc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-------RPLSY 75 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~~~~~ 75 (211)
+...+|+++|.|++|||||+|+|.+.. ....++.|+.+.....+.+++. .++++|+||-....+. .-..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 345689999999999999999999865 4567888888888888889885 4669999996432211 11235
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239 76 RGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA 152 (211)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
+.+|++++|+|++++..-. ..+...+.... .+.|.+++.||.|...-.. .........+.++...+...+..
T Consensus 148 ~~ad~il~vvD~~~p~~~~---~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHK---QIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp HHCSEEEEEEETTSHHHHH---HHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC
T ss_pred HhcCccccccccCccHHHH---HHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc
Confidence 7899999999999874322 22233333322 4678889999999643211 11111223556666666666544
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=2.6e-13 Score=105.95 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=79.7
Q ss_pred CcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc-HH
Q 028239 64 QEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT-TA 141 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~ 141 (211)
++++..+...+++++|++++|+|+++++ ++..+ ..|+..+... ++|+++|+||+|+.+... +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence 6788888888999999999999999986 88877 8888777653 899999999999975431 22 34
Q ss_pred HHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 142 QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 142 ~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
+..++.+..+. +++++||++|.|++++|+.+..
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence 55666677776 9999999999999999977643
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=3.9e-14 Score=121.82 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=96.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceee------------------------------------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFD------------------------------------------ 41 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~------------------------------------------ 41 (211)
...+|+|+|.+++|||||+|+|++..+ +.....++..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 346999999999999999999999875 2221111100
Q ss_pred ---------eeeEEEEECCeEEEEEEEeCCCCcCcc-------------ccccccc-cCCcEEEEEEECCChhhHHHHHH
Q 028239 42 ---------NFSANVAVDGSIVNLGLWDTAGQEDYS-------------RLRPLSY-RGADIFVLAFSLISRASYENVLK 98 (211)
Q Consensus 42 ---------~~~~~~~~~~~~~~l~l~D~~G~~~~~-------------~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 98 (211)
.....+...+ ...+.|+||||-.... .+...++ ..+|++++|+|++....-.+. .
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 0000111111 1246799999954311 1122233 578999999999875443332 2
Q ss_pred HHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH--HHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239 99 KWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE--LRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175 (211)
Q Consensus 99 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~ 175 (211)
.+...+... +.|+++|+||+|+..... ........ +....+..+++.+||++|.|++++++.+.+
T Consensus 208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 444555543 789999999999976432 11111100 000113346778999999999999999886
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=1.3e-12 Score=103.39 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=63.0
Q ss_pred EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239 54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV 133 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 133 (211)
+.+.|+||||...-. ......+|.+++|+|....+..+.+ ... +. ..+.++++||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchh------
Confidence 456799999964321 1235689999999998655432221 111 11 235577789999754221
Q ss_pred CCccccHHHHHHHHHHh---C------CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 134 GSNVITTAQGEELRKQI---G------AAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
......+.+.... . ..+++.+||+++.|++++++.|.+...
T Consensus 211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223333333321 1 237889999999999999999988763
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=92.88 Aligned_cols=104 Identities=7% Similarity=-0.070 Sum_probs=69.1
Q ss_pred CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHH---HHHHhhh--CCCCcEEEEeeCC-CcccCccccccccCCc
Q 028239 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKW---MPELRRF--APNVPIVLVGTKL-DLREDRGYLADHVGSN 136 (211)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~ 136 (211)
|++.++.+|..|+.++|++|||+|.+|.+.++ ....+ ...+.+. ..+.|++|++||. |++..
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A----------- 178 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----------- 178 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-----------
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-----------
Confidence 78999999999999999999999999875433 22333 3334332 2588999999995 67543
Q ss_pred cccHHHHHHHHHH---hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239 137 VITTAQGEELRKQ---IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179 (211)
Q Consensus 137 ~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~ 179 (211)
.+..++.+.... .+.-.+..|||.+|+|+.+-++||.+.+..
T Consensus 179 -ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 179 -MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp -CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred -CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 444444332211 122368889999999999999999877744
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=102.26 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=50.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCcc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYS 68 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~ 68 (211)
..++|+++|.+|+|||||+++|.+..+. ..++.++.......+.+++. ...+++||+||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4579999999999999999999987642 23333333333344444432 2358899999987655
Q ss_pred c-------cccccccCCcEEEEEEECCChhh
Q 028239 69 R-------LRPLSYRGADIFVLAFSLISRAS 92 (211)
Q Consensus 69 ~-------~~~~~~~~~d~~i~v~d~~~~~s 92 (211)
+ .+...++.+|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 4 23345789999999999876444
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=5.9e-10 Score=89.58 Aligned_cols=85 Identities=24% Similarity=0.232 Sum_probs=59.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDY 67 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~ 67 (211)
...+|+++|++|+|||||+|.|.+... ...++.++.......+.+++. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999999653 344555554555555666541 135779999996443
Q ss_pred cc-------cccccccCCcEEEEEEECCC
Q 028239 68 SR-------LRPLSYRGADIFVLAFSLIS 89 (211)
Q Consensus 68 ~~-------~~~~~~~~~d~~i~v~d~~~ 89 (211)
.+ .+...++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 22224588999999999853
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.15 E-value=5.5e-11 Score=90.71 Aligned_cols=107 Identities=7% Similarity=-0.070 Sum_probs=74.5
Q ss_pred CCCCcCccccccccccCCcEEEEEEECCChhhHH---HHHHHHHHHHhhh--CCCCcEEEEeeC-CCcccCccccccccC
Q 028239 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYE---NVLKKWMPELRRF--APNVPIVLVGTK-LDLREDRGYLADHVG 134 (211)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~--~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 134 (211)
.+||+.++..|..++.++|++|||+|.+|.+.++ ++ ..+...+.+. ..+.|++|++|| .|++..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 3578999999999999999999999999886543 22 2233444332 368999999996 588653
Q ss_pred CccccHHHHHHHHHH---hCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239 135 SNVITTAQGEELRKQ---IGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~ 180 (211)
.+..++.+.... .+.-.+..|||.+|+|+.+-++||.+.+...
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 444443332211 1223678899999999999999999887543
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=5e-10 Score=89.63 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ 142 (211)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (211)
..++|++.+..+.+.++++++|+|+++++ ..|...+.+...+.|+++|+||+|+.... ...++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 45778888888889999999999999864 45555666656689999999999997543 23333
Q ss_pred HHH----HHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 143 GEE----LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 143 ~~~----~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
..+ +++..+. .+++++||++|.|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 333 3555554 2789999999999999999997754
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.86 E-value=1.6e-09 Score=86.78 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=72.4
Q ss_pred CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239 63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ 142 (211)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (211)
.+++|++....+++.++++++|+|++++++ .|...+.+...+.|+++|+||+|+.... ...+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~ 119 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK 119 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence 478888888888889999999999999874 2333344445588999999999997643 22333
Q ss_pred HHH----HHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239 143 GEE----LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVV 177 (211)
Q Consensus 143 ~~~----~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~ 177 (211)
..+ +++..+. .+++.+||++|.|++++++.+.+..
T Consensus 120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 333 3455554 3689999999999999999997765
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=5.8e-08 Score=78.62 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=61.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----CceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-----------
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----------- 69 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------- 69 (211)
.++++|+|++|+|||||++.|.+..+.+... ..............+....+.++|++|-.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3679999999999999999999875432211 111111112222223334678999998532200
Q ss_pred ---c-----------cc--ccccCC--c-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 70 ---L-----------RP--LSYRGA--D-IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 70 ---~-----------~~--~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
. .. .....+ | +++++.|...+.+-.++ .++..+. .+.|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 0 00 011223 3 35556666544444443 3333333 48999999999997543
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=4.1e-10 Score=90.22 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=79.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC-----C-C-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc----ccc--
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN-----K-F-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL----RPL-- 73 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~-----~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~----~~~-- 73 (211)
.+|+++|.+|+|||||+|+|++. . . ....++++... ..+.++.. +.++||||-...... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999976 1 1 22233333222 12333322 569999996432211 111
Q ss_pred --cc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239 74 --SY--RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ 149 (211)
Q Consensus 74 --~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
.+ ...+.++++++......+..+ .. ++.+.. .+.|+++++||.|..+... .......+.+.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~ 302 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYANQ 302 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHH
T ss_pred HHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHHh
Confidence 11 678899999987432111121 11 111222 3789999999999876432 22333445566
Q ss_pred hCCceEEEecCCCCCCH
Q 028239 150 IGAAAYIECSSKTQQNV 166 (211)
Q Consensus 150 ~~~~~~~~~sa~~~~~v 166 (211)
.+. .+...++.+..++
T Consensus 303 ~g~-~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 303 LGE-LLSPPSKRYAAEF 318 (369)
T ss_dssp BTT-TBCSSCGGGTTTC
T ss_pred cCC-ccCCCCchhhhhc
Confidence 664 5555555544433
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.78 E-value=4.9e-08 Score=74.84 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=62.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccc---c--
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTD---------YIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSR---L-- 70 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~---------~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~-- 70 (211)
.++++++|+.|+|||||++.+++...+.. ...+.. ..........+....+.++|++|-..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 58999999999999999999987432211 001100 00111111122223577999998321100 0
Q ss_pred -----------------------ccccccCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 71 -----------------------RPLSYRGADIFVLAFSLI-SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 71 -----------------------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
....+..+++.++++|.. .+-+-.+ ..++..+.. ..++|+|.+|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence 011233468888888854 3333333 233444443 3899999999997543
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=6.4e-09 Score=86.14 Aligned_cols=150 Identities=16% Similarity=0.085 Sum_probs=84.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCcee-----------eeeeEE----------------
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYT------SNKF----PTDYIPTVF-----------DNFSAN---------------- 46 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~------~~~~----~~~~~~t~~-----------~~~~~~---------------- 46 (211)
.+...|+++|.+|+||||+++.|. +.+. .+.+.+... ..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 3321 111111100 000000
Q ss_pred EEECCeEEEEEEEeCCCCcCccc-cccc---c--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeC
Q 028239 47 VAVDGSIVNLGLWDTAGQEDYSR-LRPL---S--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTK 119 (211)
Q Consensus 47 ~~~~~~~~~l~l~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK 119 (211)
....+ +.+.|+||||...... .+.. . +..+|.+++|+|+........ ....+... .|+ ++|+||
T Consensus 179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~~---~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKDK---VDVASVIVTK 249 (504)
T ss_dssp HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHHH---HCCCCEEEEC
T ss_pred HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHhh---cCceEEEEeC
Confidence 00022 5577999999754321 1111 1 227899999999987644222 22333332 564 899999
Q ss_pred CCcccCccccccccCCccccHHHHHHHHHHhCC-----------------ceEEEecCCCCCC-HHHHHHHHHHH
Q 028239 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGA-----------------AAYIECSSKTQQN-VKAVFDTAIKV 176 (211)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~sa~~~~~-v~~lf~~l~~~ 176 (211)
.|...... . +.......+. .+.+.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g----------~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGG----------G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCT----------H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchH----------H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99864321 1 1122223332 1224479999999 99999888765
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.71 E-value=1.2e-08 Score=78.67 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=67.3
Q ss_pred EEeCCCCcC-ccccccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccC
Q 028239 58 LWDTAGQED-YSRLRPLSYRGADIFVLAFSLISRASYEN--VLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVG 134 (211)
Q Consensus 58 l~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 134 (211)
+-..|||.. ........+..+|+++.|+|+.++.+... + ..| ..+.|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~-------l~~kp~ilVlNK~DL~~~~-------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDI-------LKNKPRIMLLNKADKADAA-------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHH-------CSSSCEEEEEECGGGSCHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHH-------HCCCCEEEEEECcccCCHH--------
Confidence 456888753 33344556889999999999999877653 2 333 2479999999999997531
Q ss_pred CccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239 135 SNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~ 178 (211)
..+...++.+..+. +++.+||+++.|++++++.+.+.+.
T Consensus 67 ----~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 ----VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ----HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 11222333344455 8999999999999999998877664
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.66 E-value=9e-10 Score=88.15 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=63.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--------CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----cc-
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFP--------TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----PL- 73 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----~~- 73 (211)
.+|+++|.+|+|||||+|+|++.... ...++++.. ...+.+++. +.++||||-.....+. ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999985311 122222211 122333332 6699999964332111 11
Q ss_pred -----cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239 74 -----SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126 (211)
Q Consensus 74 -----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 126 (211)
.....+.++++++.........+ . .++.+.. .+.|+++++||.|..+..
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce-E-EEEEecC--CCceEEEEecCccccccc
Confidence 13567888888886332111121 0 0111222 378999999999987653
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=3.9e-07 Score=73.69 Aligned_cols=170 Identities=12% Similarity=0.079 Sum_probs=86.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeee--eEEEEECCeEEEEEEEeCCCCcCcccc-----ccccccC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNF--SANVAVDGSIVNLGLWDTAGQEDYSRL-----RPLSYRG 77 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~l~l~D~~G~~~~~~~-----~~~~~~~ 77 (211)
...++|+|++|+|||||+|.+.+-..+..- ....+... ...+.-....-.+.+||++|-...... ....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 357999999999999999999984322110 00001000 011111111113679999985321111 1112334
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc-cccCCccccHHHHHHHH----HHhC-
Q 028239 78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA-DHVGSNVITTAQGEELR----KQIG- 151 (211)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~- 151 (211)
.+.+++ ++..... -+. ..+...+... +.|+++|.||.|+.--.+++. .....+....+...++. .+.+
T Consensus 149 ~~~~~~-lS~G~~~-kqr--v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCC-HHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCcc-HHH--HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455554 6765211 112 2233333333 789999999999642111110 00000111122233333 1222
Q ss_pred -CceEEEecC--CCCCCHHHHHHHHHHHHcCCc
Q 028239 152 -AAAYIECSS--KTQQNVKAVFDTAIKVVLQPP 181 (211)
Q Consensus 152 -~~~~~~~sa--~~~~~v~~lf~~l~~~~~~~~ 181 (211)
....+.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 235788999 566679999999998886544
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.53 E-value=8.8e-08 Score=73.87 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=35.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~ 65 (211)
...++|+++|.||+|||||+|+|.+.... ...++++... ..+..+. .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999987632 2222222221 1223332 36699999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=6.9e-08 Score=73.68 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=34.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED 66 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~ 66 (211)
++++++|.+|+|||||+|+|.+...... .++.+.+. ...+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5999999999999999999998764321 11112111 12222332 367999999754
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.35 E-value=4e-07 Score=76.72 Aligned_cols=63 Identities=21% Similarity=0.079 Sum_probs=39.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEE----E-CCeEEEEEEEeCCCCcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA----V-DGSIVNLGLWDTAGQED 66 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~l~l~D~~G~~~ 66 (211)
...++|+|+|.+|+|||||+|+|++....-...++....+..... . ......+.|+||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 356899999999999999999999876321333333222221111 1 11123466999999654
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.24 E-value=4.1e-06 Score=68.17 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=74.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCCce-------eeeeeE-EEEE---CC------------
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS------NKF----PTDYIPTV-------FDNFSA-NVAV---DG------------ 51 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~------~~~----~~~~~~t~-------~~~~~~-~~~~---~~------------ 51 (211)
++.-|+++|++|+||||++..|.. .+. .+.+.+.. ...... .+.. .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999988763 110 11111100 000000 0000 00
Q ss_pred --eEEEEEEEeCCCCcCcccc-cc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239 52 --SIVNLGLWDTAGQEDYSRL-RP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123 (211)
Q Consensus 52 --~~~~l~l~D~~G~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 123 (211)
..+.+.|+||||....... .. .....+|.+++|+|+......... ...+.+. -.+..||+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 1155779999995432211 00 112357899999998876543332 2344433 24557899999986
Q ss_pred cCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS 160 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (211)
... ..+..+....+. |+..++.
T Consensus 253 ~~g--------------G~~ls~~~~~g~-PI~fig~ 274 (443)
T 3dm5_A 253 AKG--------------GGALSAVAATGA-PIKFIGT 274 (443)
T ss_dssp SSH--------------HHHHHHHHTTCC-CEEEEEC
T ss_pred ccc--------------cHHHHHHHHHCC-CEEEEEc
Confidence 532 223444555665 7766665
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=4.8e-07 Score=68.96 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=60.9
Q ss_pred CCCCcC-ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc
Q 028239 61 TAGQED-YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT 139 (211)
Q Consensus 61 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 139 (211)
.|||.. ........+.++|+++.|+|+.++.+.... .+ . .. +.|.++|+||+|+.+.. .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l----~-ll-~k~~iivlNK~DL~~~~-----------~- 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GV----D-FS-RKETIILLNKVDIADEK-----------T- 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TS----C-CT-TSEEEEEEECGGGSCHH-----------H-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HH----H-hc-CCCcEEEEECccCCCHH-----------H-
Confidence 577643 223344567899999999999998776532 11 1 11 78999999999997632 1
Q ss_pred HHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239 140 TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176 (211)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~ 176 (211)
.+...++.+..+. ++ .+||+++.|++++++.+...
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 1222334445565 67 99999999999998776543
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=1.8e-06 Score=67.16 Aligned_cols=89 Identities=24% Similarity=0.250 Sum_probs=59.4
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccc--cHHHHHHHH
Q 028239 70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVI--TTAQGEELR 147 (211)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (211)
+....+.++|.+++|+|+.++..-......++...... ++|.++|+||+|+.+... . ......++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~y 146 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAEDY 146 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHHHH
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHHHH
Confidence 34446789999999999998764433435555444333 789999999999976421 0 012223333
Q ss_pred HHhCCceEEEecCCCCCCHHHHHH
Q 028239 148 KQIGAAAYIECSSKTQQNVKAVFD 171 (211)
Q Consensus 148 ~~~~~~~~~~~sa~~~~~v~~lf~ 171 (211)
+..+. +.+.+||.++.|+++++.
T Consensus 147 ~~~g~-~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 147 RNIGY-DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHTC-CEEECCHHHHTTCTTTGG
T ss_pred HhCCC-eEEEEecCCCCCHHHHHh
Confidence 44566 889999998888776653
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.14 E-value=8.3e-06 Score=66.46 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=39.0
Q ss_pred EEEEEEeCCCCcCccc-cc-----cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-c-EEEEeeCCCccc
Q 028239 54 VNLGLWDTAGQEDYSR-LR-----PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV-P-IVLVGTKLDLRE 124 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~ 124 (211)
+.+.|+||||...... .. ...+..+|.+++|+|+....... .....+.. .. | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFKE---AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHHT---TSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHhh---cccCCeEEEEeCCCCcc
Confidence 4567999999654321 10 11233689999999987654221 22233332 34 5 789999999754
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.89 E-value=8.3e-06 Score=69.38 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.|+|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999999864
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.86 E-value=5.2e-06 Score=67.52 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=53.2
Q ss_pred EEEEEEeCCCCcC--ccc-cccc-----cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239 54 VNLGLWDTAGQED--YSR-LRPL-----SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125 (211)
Q Consensus 54 ~~l~l~D~~G~~~--~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 125 (211)
+.+.|+||||... .+. .... .....+.+++|+|+.......+. ...+.+. -.+..||+||.|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence 4566999999543 111 1000 12256899999999876443332 2334433 2457899999997643
Q ss_pred ccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 166 (211)
...+.......+. |+..++. |+++
T Consensus 254 --------------~G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 --------------GGGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp --------------HHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred --------------chHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 1234445556676 8777775 5544
No 231
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=4.6e-07 Score=74.83 Aligned_cols=109 Identities=15% Similarity=-0.041 Sum_probs=62.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcC--ccccc--------c
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED--YSRLR--------P 72 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~--~~~~~--------~ 72 (211)
...+.|+++|.+|+||||+.++|...... ...++...... ......+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998754210 11111110000 0000011112235788888732 23333 3
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEe
Q 028239 73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVG 117 (211)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 117 (211)
.++...++.++|+|.++. +.... ..|...+.+. ..+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 455567888999999987 45554 6777777665 44554444
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.78 E-value=9.9e-06 Score=62.81 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=54.1
Q ss_pred EEEEEEeCCCCcC--ccc-ccc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239 54 VNLGLWDTAGQED--YSR-LRP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE 124 (211)
Q Consensus 54 ~~l~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 124 (211)
+.+.|+||||... ... ... .....+|.+++|+|........ .....+.. ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 4567999999765 211 111 1234789999999987543222 12233333 355 678899999753
Q ss_pred CccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q 028239 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKA 168 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 168 (211)
. ...+..+....+. |+..++ .|+++++
T Consensus 254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 2 2234456666776 776665 4666654
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.77 E-value=0.00017 Score=57.26 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=54.5
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH---HHh
Q 028239 74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR---KQI 150 (211)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 150 (211)
...++|.+++|.+. ++.........++-..... ++|.++|+||+|+.+.. ......++. ...
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~------------~~~~~~~~~~~y~~~ 191 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDE------------GMDFVNEQMDIYRNI 191 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHH------------HHHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCch------------hHHHHHHHHHHHHhC
Confidence 36789999988665 4543333335555444334 78889999999997642 111122333 345
Q ss_pred CCceEEEecCCCCCCHHHHHHH
Q 028239 151 GAAAYIECSSKTQQNVKAVFDT 172 (211)
Q Consensus 151 ~~~~~~~~sa~~~~~v~~lf~~ 172 (211)
+. +.+.+||.++.|++++...
T Consensus 192 G~-~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 192 GY-RVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TC-CEEECBTTTTBTHHHHHHH
T ss_pred CC-cEEEEecCCCcCHHHHHHh
Confidence 65 8899999999999987654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.60 E-value=6.7e-05 Score=61.22 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+..=|.|+|++++|||+|+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3456889999999999999999863
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.33 E-value=0.00012 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 236
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.29 E-value=0.00014 Score=53.08 Aligned_cols=28 Identities=32% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|.......|+|+|+.|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6556667899999999999999998866
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.23 E-value=0.00017 Score=51.46 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.17 E-value=0.00021 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999876
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.00027 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=20.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
....--|+|+|++|||||||++.|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33445799999999999999998865
No 240
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.14 E-value=0.00032 Score=50.17 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=24.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|+......|+|.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 7777777899999999999999998864
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.00036 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
--|+|+|++|+|||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998653
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.10 E-value=0.00032 Score=50.84 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=22.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
|+-.....|+|+|++||||||+++.|.+..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 333445579999999999999999997754
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.09 E-value=0.00037 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.--|+|+|++|+|||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.09 E-value=0.00037 Score=49.82 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
|+..+...|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45556678999999999999999988654
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.08 E-value=0.00021 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998754
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.07 E-value=0.0003 Score=50.43 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|+++|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.07 E-value=0.0017 Score=50.29 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 028239 8 KCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~ 27 (211)
.++++|++|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.06 E-value=0.00031 Score=50.87 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.05 E-value=0.00031 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
++|+|+.|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999853
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.05 E-value=0.00031 Score=49.72 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 028239 8 KCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~ 27 (211)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 251
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.00038 Score=50.76 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=22.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|+..+...|+|.|.+||||||+.+.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445567899999999999999998864
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.00 E-value=0.00038 Score=51.41 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|+.|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998743
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.99 E-value=0.001 Score=54.24 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=37.6
Q ss_pred EEEEEEeCCCCcCccc-ccc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239 54 VNLGLWDTAGQEDYSR-LRP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE 124 (211)
Q Consensus 54 ~~l~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 124 (211)
+.+.|+||||...... ... ..+..++.+++|+|+......... ...+.. ..+ .-+|.||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH---HSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc---cCCCeEEEEecCCCCc
Confidence 5567999999644321 111 123468899999998765433222 233332 234 346899999753
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.98 E-value=0.00039 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++|+|+.|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998764
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00044 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
|+|+||+|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 256
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00067 Score=47.87 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.-.|+++|++|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.96 E-value=0.00041 Score=51.11 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999998743
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.90 E-value=0.00059 Score=49.78 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
....|+|+|++|+|||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999988653
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.86 E-value=0.00061 Score=47.75 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q 028239 7 IKCVTVGDGAVGKTCMLICY 26 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l 26 (211)
.-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.85 E-value=0.00064 Score=47.82 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988764
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.85 E-value=0.00066 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998754
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.83 E-value=0.00066 Score=47.44 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.83 E-value=0.00063 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999887653
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.81 E-value=0.00067 Score=48.55 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.80 E-value=0.00074 Score=49.39 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.80 E-value=0.0007 Score=47.46 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988643
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.79 E-value=0.00094 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.78 E-value=0.00078 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 269
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.77 E-value=0.00075 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 270
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.77 E-value=0.001 Score=48.06 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.....|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.76 E-value=0.00089 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988864
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.76 E-value=0.0009 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 028239 6 FIKCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~ 27 (211)
.-.|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 273
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.75 E-value=0.0025 Score=43.63 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3469999999999999999987654
No 274
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.74 E-value=0.0013 Score=47.56 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=21.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
..+...|+|.|++||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998864
No 275
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.73 E-value=0.00077 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.72 E-value=0.00091 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.71 E-value=0.0012 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...|+|.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 278
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.71 E-value=0.0013 Score=49.30 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+.++|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998864
No 279
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.70 E-value=0.0011 Score=48.80 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.69 E-value=0.0011 Score=47.93 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.68 E-value=0.00093 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999988753
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.68 E-value=0.00099 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987753
No 283
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.68 E-value=0.00095 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997753
No 284
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.67 E-value=0.00097 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987753
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.67 E-value=0.00099 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..|+|+|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988653
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.67 E-value=0.00097 Score=49.82 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998765
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.66 E-value=0.0011 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.65 E-value=0.0011 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 289
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.64 E-value=0.001 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997754
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.0015 Score=46.47 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.0011 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998763
No 292
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.63 E-value=0.0011 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997753
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.63 E-value=0.00092 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..--|+|+|++|+||||+.+.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999887653
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.62 E-value=0.0011 Score=51.31 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999988754
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.61 E-value=0.0011 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987753
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.61 E-value=0.0013 Score=47.43 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.61 E-value=0.0011 Score=50.22 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999988763
No 298
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.60 E-value=0.0013 Score=49.33 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.0013 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.60 E-value=0.0012 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999987653
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.59 E-value=0.0012 Score=47.84 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.59 E-value=0.0011 Score=47.27 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 303
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.58 E-value=0.0012 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997753
No 304
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.58 E-value=0.0015 Score=49.17 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=21.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 2 SASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 2 ~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+..+.+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998865
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.58 E-value=0.0015 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
..-|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 306
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.57 E-value=0.0013 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997753
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.57 E-value=0.0015 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 308
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.57 E-value=0.0013 Score=49.53 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 309
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.56 E-value=0.0013 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987753
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.56 E-value=0.0013 Score=48.96 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 028239 8 KCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~ 27 (211)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.56 E-value=0.0013 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999875
No 312
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.55 E-value=0.0012 Score=48.20 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0017 Score=46.43 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988754
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.54 E-value=0.0016 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|++.|++|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34699999999999999998864
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.54 E-value=0.0015 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0017 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999976
No 317
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.53 E-value=0.0013 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987753
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.53 E-value=0.00098 Score=48.78 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 319
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.53 E-value=0.0014 Score=49.81 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 320
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.53 E-value=0.0018 Score=49.80 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
....-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999965
No 321
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.53 E-value=0.0017 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998754
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.52 E-value=0.0018 Score=46.96 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.51 E-value=0.0014 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999997753
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.49 E-value=0.0015 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.49 E-value=0.0013 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.49 E-value=0.0017 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.48 E-value=0.0015 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+...|+|.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 328
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.48 E-value=0.0015 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998764
No 329
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.47 E-value=0.0019 Score=46.91 Aligned_cols=24 Identities=21% Similarity=-0.050 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 330
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.47 E-value=0.0022 Score=46.99 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998865
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.46 E-value=0.0022 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...-|+|+|++|||||||++.+.+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4567999999999999999988763
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.45 E-value=0.0016 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987653
No 333
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.44 E-value=0.0017 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.44 E-value=0.0021 Score=48.11 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...-|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998866
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.43 E-value=0.0021 Score=44.88 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.42 E-value=0.0015 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+...|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 337
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.42 E-value=0.0025 Score=49.11 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+..-|+|.|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987753
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.41 E-value=0.0025 Score=46.19 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
....-|+|+|++|+|||||++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.41 E-value=0.0018 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988854
No 340
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.39 E-value=0.0021 Score=47.38 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 341
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.38 E-value=0.0013 Score=48.79 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHh-cC
Q 028239 8 KCVTVGDGAVGKTCMLICYT-SN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~-~~ 29 (211)
-++|+|+.|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 342
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.0021 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 343
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.37 E-value=0.0021 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888654
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.37 E-value=0.0019 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.37 E-value=0.0027 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...+=|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988754
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.36 E-value=0.0028 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...|+|+|++|+||||+++.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.35 E-value=0.0016 Score=51.81 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998775
No 348
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.34 E-value=0.0022 Score=45.89 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 349
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.34 E-value=0.0024 Score=47.05 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 028239 9 CVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~ 28 (211)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988864
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.33 E-value=0.0014 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999887643
No 351
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.32 E-value=0.0027 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=22.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+...|+|.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998765
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0017 Score=46.04 Aligned_cols=24 Identities=21% Similarity=-0.002 Sum_probs=16.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.30 E-value=0.00095 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.28 E-value=0.0022 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|+.|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988763
No 355
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.26 E-value=0.0015 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988764
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.25 E-value=0.003 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 357
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.002 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.24 E-value=0.0026 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999988753
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0039 Score=44.35 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+..-|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.24 E-value=0.0023 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998754
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.23 E-value=0.0028 Score=44.72 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
.-+.++|++|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998875
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.23 E-value=0.0022 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998765
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.22 E-value=0.003 Score=45.06 Aligned_cols=21 Identities=19% Similarity=-0.026 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 364
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.21 E-value=0.0026 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.20 E-value=0.0027 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998754
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.20 E-value=0.0025 Score=45.71 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.19 E-value=0.0028 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-|++.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.19 E-value=0.0036 Score=47.04 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 028239 7 IKCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~ 27 (211)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 369
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.0028 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999998764
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.18 E-value=0.0027 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.--|+++|+.|+||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999998863
No 371
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.17 E-value=0.0029 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998754
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.17 E-value=0.0029 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999998753
No 373
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.16 E-value=0.003 Score=50.19 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998753
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.15 E-value=0.0032 Score=44.08 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 375
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.15 E-value=0.0028 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988764
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.12 E-value=0.004 Score=47.67 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998863
No 377
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.11 E-value=0.0028 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0032 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
--++++|+.|+||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.11 E-value=0.0037 Score=48.47 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...-|+|+|+.|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988763
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.11 E-value=0.0033 Score=44.60 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988854
No 381
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.11 E-value=0.0033 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.11 E-value=0.004 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
..-|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.10 E-value=0.0033 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998753
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.10 E-value=0.0029 Score=50.47 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|+.|+|||||++.+.+-
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988763
No 385
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.10 E-value=0.0032 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999998754
No 386
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.10 E-value=0.0029 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998753
No 387
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.09 E-value=0.0033 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988743
No 388
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.09 E-value=0.0048 Score=44.49 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..++.|.+.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999988654
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.04 E-value=0.0042 Score=46.23 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
+.+.|+|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.04 E-value=0.0012 Score=48.08 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 391
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.02 E-value=0.0031 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888653
No 392
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.01 E-value=0.0058 Score=45.29 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+..-|++.|++|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999988653
No 393
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.00 E-value=0.0038 Score=45.95 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||+|+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888653
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.99 E-value=0.0037 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-|+|+|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 395
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.99 E-value=0.0031 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..-|+|.|+.||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999988765
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.98 E-value=0.0042 Score=43.89 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 397
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.98 E-value=0.0041 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999888754
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.93 E-value=0.0053 Score=42.88 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 399
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.93 E-value=0.0059 Score=47.84 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=51.1
Q ss_pred EEEEeCCCCcCccccccc------cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239 56 LGLWDTAGQEDYSRLRPL------SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL 129 (211)
Q Consensus 56 l~l~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 129 (211)
+.++|++|.......... ..-..|-.+++.|........+ ....+.+. --..++++||.|....
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~----~~~~~~~~--~~it~iilTKlD~~a~---- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVE----QARQFNEA--VKIDGIILTKLDADAR---- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH----HHHHHHHH--SCCCEEEEECGGGCSC----
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHH----HHHHHHHh--cCCCEEEEeCcCCccc----
Confidence 457999996443321100 1124788899999766543332 22333332 1233778899997432
Q ss_pred ccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q 028239 130 ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAV 169 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 169 (211)
...+.......+. |+..++ +|++++++
T Consensus 284 ----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 ----------GGAALSISYVIDA-PILFVG--VGQGYDDL 310 (328)
T ss_dssp ----------CHHHHHHHHHHTC-CEEEEE--CSSSTTCE
T ss_pred ----------hhHHHHHHHHHCC-CEEEEe--CCCCcccc
Confidence 1334556666776 777666 56666543
No 400
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.92 E-value=0.0054 Score=45.48 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=20.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 3 ASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 3 ~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...++++.|+|+|||||||+...|..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 34578999999999999999988854
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.90 E-value=0.0027 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998753
No 402
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.87 E-value=0.0042 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.||||||+++.+.+-.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.86 E-value=0.0043 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998763
No 404
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.84 E-value=0.005 Score=44.81 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.84 E-value=0.0051 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
..-|+++|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988754
No 406
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.84 E-value=0.0028 Score=48.82 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=18.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|+.. .+-|+|.|++||||||+.+.|..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 6654 45699999999999999988754
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.83 E-value=0.0038 Score=45.47 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999887765
No 408
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.82 E-value=0.0052 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999875
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.81 E-value=0.0044 Score=47.61 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999988764
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.004 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999988753
No 411
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.76 E-value=0.0055 Score=43.34 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998854
No 412
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.76 E-value=0.0054 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.121 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 413
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.73 E-value=0.0059 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
-.|++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 414
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.72 E-value=0.006 Score=44.68 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.72 E-value=0.0067 Score=46.65 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+.-+++.|+||+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999988654
No 416
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.006 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999888653
No 417
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.70 E-value=0.0058 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998764
No 418
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.70 E-value=0.0027 Score=50.29 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0058 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.69 E-value=0.0061 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
.-|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.68 E-value=0.0059 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998874
No 422
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.66 E-value=0.006 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35999999999999999988764
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.65 E-value=0.0098 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
--|+++|+.|+||||+++.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999998864
No 424
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.64 E-value=0.022 Score=46.51 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.7
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 028239 7 IKCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~ 27 (211)
.=|.|+|+.++|||+|+|.++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 445699999999999999654
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.63 E-value=0.0063 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
--++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.59 E-value=0.032 Score=44.28 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 028239 9 CVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~ 27 (211)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999876
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.55 E-value=0.01 Score=42.77 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
.|.|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 428
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.54 E-value=0.01 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
--|+|+|+.|+|||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999998864
No 429
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.52 E-value=0.0088 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999976543
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.48 E-value=0.0049 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
--++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999653
No 431
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.48 E-value=0.0076 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988753
No 432
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.48 E-value=0.013 Score=44.40 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.....+++.|++|+|||+|+..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999988764
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.45 E-value=0.011 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 434
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.43 E-value=0.01 Score=40.82 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 028239 9 CVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~ 27 (211)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998875
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.39 E-value=0.012 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...-|+++|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998753
No 436
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.36 E-value=0.0093 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988653
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.35 E-value=0.009 Score=49.24 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998875
No 438
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.0095 Score=48.36 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.||||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998753
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.33 E-value=0.009 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
+++|+|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998764
No 440
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.33 E-value=0.0049 Score=42.00 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999877654
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.32 E-value=0.0085 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988875
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.29 E-value=0.01 Score=42.91 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997664
No 443
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.29 E-value=0.0099 Score=46.38 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999988764
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.0096 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+--
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 445
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.28 E-value=0.0093 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999987653
No 446
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.26 E-value=0.01 Score=45.67 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||++++.+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999988764
No 447
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.25 E-value=0.012 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHH
Q 028239 4 SKFIKCVTVGDGAVGKTCMLICY 26 (211)
Q Consensus 4 ~~~~~I~viG~~~~GKSsli~~l 26 (211)
.+.+|++++|...|||||+++.+
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46799999999999999999755
No 448
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.011 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+-.|++.||||+|||.|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.25 E-value=0.011 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987753
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.23 E-value=0.015 Score=48.62 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 451
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.23 E-value=0.013 Score=43.40 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
....|+|+|++|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999988864
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.23 E-value=0.015 Score=42.92 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=21.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239 1 MSASKFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 1 m~~~~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
|...+..-|++.|.+|+||||+++.+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445567899999999999999988754
No 453
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.20 E-value=0.017 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~ 28 (211)
...+|+++|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999986653
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.20 E-value=0.011 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999877654
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.20 E-value=0.0097 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988763
No 456
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.0087 Score=47.00 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 028239 9 CVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~ 28 (211)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 457
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.011 Score=48.07 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999998764
No 458
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.17 E-value=0.011 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|.|++|+|||+|++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999887643
No 459
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.011 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 460
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.15 E-value=0.013 Score=45.70 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988654
No 461
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.012 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999998743
No 462
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.013 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.||||+|||.|++++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46999999999999999998764
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.00 E-value=0.0059 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988753
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.99 E-value=0.013 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999888654
No 465
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.99 E-value=0.012 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.97 E-value=0.0098 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999987653
No 467
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.97 E-value=0.016 Score=41.28 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999855
No 468
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.97 E-value=0.011 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+--
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999887643
No 469
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.96 E-value=0.013 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 028239 7 IKCVTVGDGAVGKTCMLICYT 27 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~ 27 (211)
-.|+++|+.|+||||++..|.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998775
No 470
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.92 E-value=0.017 Score=40.78 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998754
No 471
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.92 E-value=0.016 Score=43.67 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~~ 30 (211)
..|++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999987654
No 472
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.92 E-value=0.009 Score=50.49 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999877654
No 473
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.92 E-value=0.014 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 474
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.92 E-value=0.015 Score=46.05 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999988764
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.89 E-value=0.012 Score=44.37 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239 5 KFIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 5 ~~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
+...|+|.|.+|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999877653
No 476
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.87 E-value=0.013 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999988753
No 477
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.85 E-value=0.025 Score=43.79 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=18.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 028239 7 IKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~ 28 (211)
--|+++|++|+||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4688999999999999987753
No 478
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.84 E-value=0.017 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999887653
No 479
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.84 E-value=0.045 Score=42.41 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 028239 9 CVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~ 29 (211)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998654
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.82 E-value=0.018 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.82 E-value=0.014 Score=46.07 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 482
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.80 E-value=0.012 Score=49.83 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988664
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.78 E-value=0.023 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998754
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.77 E-value=0.02 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..-|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988653
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.77 E-value=0.017 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.76 E-value=0.017 Score=45.10 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999998654
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.75 E-value=0.021 Score=44.87 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999888653
No 488
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.018 Score=46.69 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|++.||||+|||.|++++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 46999999999999999998764
No 489
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.74 E-value=0.016 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 490
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.74 E-value=0.017 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
-.|+++|++|+|||+|++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998763
No 491
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.73 E-value=0.017 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998754
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.72 E-value=0.016 Score=48.54 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 028239 8 KCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~ 28 (211)
-++++|++|+|||||++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.69 E-value=0.016 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-.++++|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999887653
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.69 E-value=0.018 Score=41.93 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTS 28 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~ 28 (211)
.+.|++.|++|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988765
No 495
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.67 E-value=0.018 Score=45.50 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 028239 6 FIKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 6 ~~~I~viG~~~~GKSsli~~l~~~ 29 (211)
...|++.|++|+|||++.+.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988654
No 496
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.66 E-value=0.019 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
..+++.|++|+|||++++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988754
No 497
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.64 E-value=0.018 Score=46.99 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
--+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.02 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 028239 9 CVTVGDGAVGKTCMLICYTSNK 30 (211)
Q Consensus 9 I~viG~~~~GKSsli~~l~~~~ 30 (211)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.59 E-value=0.02 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 028239 8 KCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 8 ~I~viG~~~~GKSsli~~l~~~ 29 (211)
-++|.|++|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4889999999999999998765
No 500
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.58 E-value=0.029 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 028239 7 IKCVTVGDGAVGKTCMLICYTSN 29 (211)
Q Consensus 7 ~~I~viG~~~~GKSsli~~l~~~ 29 (211)
.-|+|+|++|||||+|...+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999988653
Done!