Query 028240
Match_columns 211
No_of_seqs 125 out of 1256
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2E-51 4.3E-56 344.1 22.7 201 9-210 1-204 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.6E-48 1.2E-52 319.2 20.7 203 5-210 8-215 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.4E-47 5.1E-52 309.9 17.4 179 10-210 4-188 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 2.9E-46 6.3E-51 317.4 23.1 202 5-210 9-221 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 3.5E-46 7.7E-51 313.6 21.6 195 11-210 1-204 (317)
6 cd06660 Aldo_ket_red Aldo-keto 100.0 1.6E-45 3.5E-50 304.9 22.1 194 11-211 1-198 (285)
7 PRK10625 tas putative aldo-ket 100.0 5E-45 1.1E-49 310.0 22.6 198 9-210 1-232 (346)
8 PRK10376 putative oxidoreducta 100.0 1.7E-44 3.7E-49 299.9 22.9 196 12-211 10-212 (290)
9 PLN02587 L-galactose dehydroge 100.0 1.4E-44 3E-49 303.6 20.9 194 11-211 1-204 (314)
10 KOG1577 Aldo/keto reductase fa 100.0 1.8E-44 4E-49 293.4 16.8 177 11-210 6-206 (300)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 9.7E-43 2.1E-47 288.0 18.0 182 23-211 1-187 (283)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.2E-42 1.1E-46 281.9 19.5 169 20-210 2-177 (267)
13 PRK14863 bifunctional regulato 100.0 5.4E-42 1.2E-46 284.9 17.6 179 18-210 2-190 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2E-40 4.4E-45 273.4 19.5 180 1-210 1-185 (275)
15 COG4989 Predicted oxidoreducta 100.0 4.4E-41 9.5E-46 264.2 13.7 199 9-210 1-207 (298)
16 COG1453 Predicted oxidoreducta 100.0 2E-39 4.3E-44 267.3 16.4 194 9-211 1-202 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4.4E-38 9.5E-43 249.2 15.5 200 8-210 21-228 (342)
18 KOG3023 Glutamate-cysteine lig 98.2 4.9E-06 1.1E-10 66.1 6.3 68 141-209 155-224 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.9 1.6 3.4E-05 36.7 14.1 146 40-209 134-283 (316)
20 PF07021 MetW: Methionine bios 93.2 1.4 3E-05 34.5 9.6 142 46-209 5-163 (193)
21 cd03316 MR_like Mandelate race 93.0 3.1 6.8E-05 35.4 12.7 150 40-209 139-295 (357)
22 cd03174 DRE_TIM_metallolyase D 90.8 2.1 4.5E-05 34.7 8.7 103 105-209 15-132 (265)
23 PRK13958 N-(5'-phosphoribosyl) 89.5 1.6 3.5E-05 34.5 6.8 67 119-187 17-84 (207)
24 PRK01222 N-(5'-phosphoribosyl) 89.2 3.5 7.6E-05 32.7 8.5 66 120-187 20-86 (210)
25 PRK10550 tRNA-dihydrouridine s 88.8 11 0.00025 31.7 11.7 131 40-183 73-222 (312)
26 cd00739 DHPS DHPS subgroup of 88.6 3.8 8.2E-05 33.6 8.6 100 106-211 21-126 (257)
27 COG0135 TrpF Phosphoribosylant 88.1 4.6 0.0001 32.0 8.4 80 120-208 19-101 (208)
28 COG1748 LYS9 Saccharopine dehy 86.1 6.1 0.00013 34.4 8.7 83 40-138 77-159 (389)
29 cd04740 DHOD_1B_like Dihydroor 85.2 20 0.00044 29.7 12.8 151 40-206 100-286 (296)
30 cd00423 Pterin_binding Pterin 84.6 9.7 0.00021 31.1 9.0 99 107-211 22-126 (258)
31 COG1140 NarY Nitrate reductase 84.5 0.53 1.1E-05 40.4 1.4 54 154-207 263-317 (513)
32 cd00740 MeTr MeTr subgroup of 84.0 22 0.00047 29.0 10.8 101 106-211 23-125 (252)
33 cd03322 rpsA The starvation se 83.0 29 0.00063 29.7 13.3 142 40-209 126-269 (361)
34 COG0635 HemN Coproporphyrinoge 82.8 14 0.00029 32.6 9.6 107 23-167 150-276 (416)
35 PRK07379 coproporphyrinogen II 81.2 16 0.00034 31.9 9.4 58 107-166 180-254 (400)
36 PRK05692 hydroxymethylglutaryl 80.8 10 0.00022 31.6 7.8 101 106-209 23-137 (287)
37 PRK06294 coproporphyrinogen II 80.0 20 0.00043 30.9 9.6 59 107-167 168-243 (370)
38 COG4464 CapC Capsular polysacc 79.8 28 0.00061 27.9 9.3 126 37-164 15-166 (254)
39 PF03102 NeuB: NeuB family; I 79.8 17 0.00037 29.5 8.5 110 38-168 52-183 (241)
40 TIGR01496 DHPS dihydropteroate 79.4 33 0.00071 28.1 10.6 98 106-211 20-124 (257)
41 cd03315 MLE_like Muconate lact 79.2 33 0.00071 27.9 15.0 149 40-209 85-235 (265)
42 PRK07259 dihydroorotate dehydr 79.1 36 0.00077 28.3 11.4 153 40-206 102-289 (301)
43 PRK05660 HemN family oxidoredu 78.6 23 0.0005 30.6 9.6 26 107-133 172-197 (378)
44 PRK08392 hypothetical protein; 78.4 31 0.00067 27.2 12.1 145 43-209 15-178 (215)
45 PRK09058 coproporphyrinogen II 78.2 22 0.00048 31.6 9.5 59 107-167 228-304 (449)
46 cd07943 DRE_TIM_HOA 4-hydroxy- 77.8 26 0.00057 28.5 9.3 102 106-209 19-129 (263)
47 PRK13803 bifunctional phosphor 77.5 19 0.00041 33.4 9.1 69 120-188 20-89 (610)
48 PRK08446 coproporphyrinogen II 77.3 45 0.00098 28.5 11.1 59 107-167 163-231 (350)
49 PRK13796 GTPase YqeH; Provisio 76.6 49 0.0011 28.5 13.4 122 38-171 53-177 (365)
50 cd02930 DCR_FMN 2,4-dienoyl-Co 76.2 49 0.0011 28.3 13.4 97 83-184 202-305 (353)
51 cd00405 PRAI Phosphoribosylant 76.2 18 0.00038 28.2 7.5 45 119-170 69-113 (203)
52 PF00682 HMGL-like: HMGL-like 75.1 25 0.00054 28.0 8.3 120 39-174 11-143 (237)
53 cd03318 MLE Muconate Lactonizi 74.4 55 0.0012 28.0 12.3 78 128-209 215-294 (365)
54 PRK07535 methyltetrahydrofolat 74.0 48 0.001 27.2 9.8 98 107-211 23-122 (261)
55 TIGR01502 B_methylAsp_ase meth 73.9 21 0.00045 31.4 8.0 79 131-209 267-352 (408)
56 PRK09427 bifunctional indole-3 73.7 14 0.0003 33.0 6.9 66 119-188 273-339 (454)
57 cd03327 MR_like_2 Mandelate ra 73.2 57 0.0012 27.7 13.0 149 40-209 120-277 (341)
58 TIGR02026 BchE magnesium-proto 73.1 46 0.001 29.9 10.3 89 115-205 289-391 (497)
59 TIGR00735 hisF imidazoleglycer 73.1 49 0.0011 26.8 9.8 91 115-208 160-253 (254)
60 cd03325 D-galactonate_dehydrat 72.1 62 0.0013 27.6 14.4 150 40-209 123-282 (352)
61 PF00809 Pterin_bind: Pterin b 72.0 47 0.001 26.2 10.5 87 121-211 30-122 (210)
62 PRK06015 keto-hydroxyglutarate 71.6 15 0.00032 29.0 6.0 85 108-209 15-101 (201)
63 TIGR00126 deoC deoxyribose-pho 71.6 34 0.00074 27.1 8.1 72 40-126 130-205 (211)
64 cd03314 MAL Methylaspartate am 71.4 31 0.00067 29.9 8.4 80 130-209 230-316 (369)
65 PF05690 ThiG: Thiazole biosyn 71.0 38 0.00082 27.5 8.1 70 105-175 72-142 (247)
66 cd03323 D-glucarate_dehydratas 70.9 71 0.0015 27.8 14.2 146 39-209 167-316 (395)
67 PRK05628 coproporphyrinogen II 70.5 52 0.0011 28.3 9.7 26 107-133 173-198 (375)
68 PLN02363 phosphoribosylanthran 70.3 21 0.00046 29.3 6.8 67 120-187 64-131 (256)
69 PRK07094 biotin synthase; Prov 70.3 35 0.00076 28.6 8.5 116 39-175 70-202 (323)
70 TIGR01182 eda Entner-Doudoroff 70.0 18 0.00039 28.6 6.2 81 114-209 24-105 (204)
71 PRK13347 coproporphyrinogen II 70.0 33 0.00071 30.5 8.5 111 46-167 153-291 (453)
72 cd07944 DRE_TIM_HOA_like 4-hyd 69.4 62 0.0013 26.5 10.2 102 105-209 16-126 (266)
73 COG1801 Uncharacterized conser 69.3 63 0.0014 26.6 11.0 109 23-138 4-115 (263)
74 PRK08208 coproporphyrinogen II 68.3 46 0.001 29.3 9.1 111 46-167 142-275 (430)
75 PRK15072 bifunctional D-altron 67.6 41 0.00088 29.4 8.5 79 127-209 232-312 (404)
76 cd03321 mandelate_racemase Man 67.5 78 0.0017 27.0 13.1 149 41-209 142-292 (355)
77 PRK00164 moaA molybdenum cofac 67.5 74 0.0016 26.7 14.7 151 38-207 48-225 (331)
78 PF00682 HMGL-like: HMGL-like 67.4 35 0.00077 27.1 7.6 97 106-208 11-124 (237)
79 cd07939 DRE_TIM_NifV Streptomy 67.3 67 0.0014 26.1 10.0 97 104-208 15-126 (259)
80 cd07948 DRE_TIM_HCS Saccharomy 66.9 70 0.0015 26.2 11.7 26 38-63 18-43 (262)
81 PRK08609 hypothetical protein; 66.8 1.1E+02 0.0023 28.3 15.2 148 44-208 351-521 (570)
82 smart00052 EAL Putative diguan 66.6 43 0.00093 26.1 7.9 98 109-210 99-208 (241)
83 PF01081 Aldolase: KDPG and KH 66.5 12 0.00027 29.3 4.6 85 108-209 19-105 (196)
84 smart00642 Aamy Alpha-amylase 66.2 11 0.00023 28.7 4.1 16 195-210 73-88 (166)
85 PRK05283 deoxyribose-phosphate 65.0 33 0.00072 28.2 6.9 79 40-128 144-227 (257)
86 cd04731 HisF The cyclase subun 64.6 71 0.0015 25.5 11.1 85 117-204 156-243 (243)
87 TIGR00538 hemN oxygen-independ 64.5 48 0.001 29.4 8.5 111 46-167 152-290 (455)
88 PRK05799 coproporphyrinogen II 64.0 82 0.0018 27.0 9.7 26 107-133 164-189 (374)
89 TIGR03471 HpnJ hopanoid biosyn 63.9 73 0.0016 28.3 9.6 90 115-206 289-392 (472)
90 PRK06582 coproporphyrinogen II 63.8 65 0.0014 28.0 9.0 111 46-167 112-250 (390)
91 TIGR03247 glucar-dehydr glucar 63.6 1.1E+02 0.0024 27.2 13.3 82 129-210 252-334 (441)
92 PRK09249 coproporphyrinogen II 63.2 29 0.00064 30.8 6.9 59 107-167 216-290 (453)
93 PRK00730 rnpA ribonuclease P; 62.9 54 0.0012 24.2 7.1 63 82-154 46-110 (138)
94 COG1121 ZnuC ABC-type Mn/Zn tr 62.5 51 0.0011 27.0 7.6 65 107-174 113-206 (254)
95 cd00308 enolase_like Enolase-s 61.7 61 0.0013 25.6 8.0 79 127-209 120-200 (229)
96 PF14871 GHL6: Hypothetical gl 61.7 18 0.0004 26.4 4.5 20 191-210 43-62 (132)
97 cd06543 GH18_PF-ChiA-like PF-C 61.3 97 0.0021 25.9 14.0 181 18-211 67-259 (294)
98 cd07943 DRE_TIM_HOA 4-hydroxy- 61.1 89 0.0019 25.4 14.0 25 38-62 18-42 (263)
99 PRK00507 deoxyribose-phosphate 61.1 49 0.0011 26.4 7.2 76 39-126 133-209 (221)
100 PRK06552 keto-hydroxyglutarate 61.0 32 0.00069 27.3 6.0 80 114-209 29-113 (213)
101 COG3172 NadR Predicted ATPase/ 60.8 48 0.001 25.5 6.6 104 48-155 71-185 (187)
102 PRK14017 galactonate dehydrata 60.1 1.1E+02 0.0025 26.3 13.9 150 40-209 124-283 (382)
103 cd01948 EAL EAL domain. This d 60.0 58 0.0012 25.3 7.5 98 109-210 98-207 (240)
104 cd03329 MR_like_4 Mandelate ra 59.8 1.1E+02 0.0024 26.2 14.4 149 40-209 143-296 (368)
105 TIGR00676 fadh2 5,10-methylene 59.7 97 0.0021 25.4 12.3 149 42-207 15-185 (272)
106 COG0502 BioB Biotin synthase a 59.5 63 0.0014 27.6 7.8 133 39-191 84-233 (335)
107 cd02803 OYE_like_FMN_family Ol 59.5 1E+02 0.0023 25.7 13.5 94 83-184 206-310 (327)
108 COG1168 MalY Bifunctional PLP- 59.2 69 0.0015 27.9 8.0 45 166-210 146-196 (388)
109 COG2089 SpsE Sialic acid synth 59.2 1.1E+02 0.0025 26.1 11.4 116 38-172 86-221 (347)
110 cd00248 Mth938-like Mth938-lik 58.7 32 0.00069 24.1 5.2 49 163-211 37-85 (109)
111 PRK09061 D-glutamate deacylase 58.3 1.2E+02 0.0026 27.4 10.0 111 44-165 171-285 (509)
112 PRK08255 salicylyl-CoA 5-hydro 58.3 1.7E+02 0.0038 27.9 13.8 130 46-184 555-716 (765)
113 COG1831 Predicted metal-depend 57.9 1.1E+02 0.0024 25.4 9.9 136 70-206 21-185 (285)
114 TIGR02370 pyl_corrinoid methyl 57.9 88 0.0019 24.3 11.5 146 39-206 9-164 (197)
115 PRK12331 oxaloacetate decarbox 57.8 1.4E+02 0.003 26.6 10.5 103 106-209 23-140 (448)
116 PLN02746 hydroxymethylglutaryl 57.6 88 0.0019 26.9 8.5 94 111-209 69-179 (347)
117 PRK08195 4-hyroxy-2-oxovalerat 57.4 1.2E+02 0.0027 25.8 9.9 100 105-210 21-133 (337)
118 TIGR00190 thiC thiamine biosyn 57.3 55 0.0012 28.7 7.1 105 39-164 74-182 (423)
119 PRK08599 coproporphyrinogen II 57.3 96 0.0021 26.7 8.9 58 107-166 165-239 (377)
120 PRK05414 urocanate hydratase; 56.6 38 0.00083 30.6 6.2 125 48-186 118-267 (556)
121 PRK05718 keto-hydroxyglutarate 56.5 92 0.002 24.7 8.0 54 39-94 24-77 (212)
122 cd02810 DHOD_DHPD_FMN Dihydroo 56.5 1.1E+02 0.0024 25.1 11.7 131 40-185 109-272 (289)
123 PRK15108 biotin synthase; Prov 56.0 1.3E+02 0.0028 25.7 11.3 105 39-159 76-188 (345)
124 PRK00912 ribonuclease P protei 55.9 1E+02 0.0022 24.5 10.3 140 41-209 15-171 (237)
125 PF00697 PRAI: N-(5'phosphorib 55.8 15 0.00032 28.7 3.3 67 118-188 14-81 (197)
126 TIGR02660 nifV_homocitr homoci 55.4 1.4E+02 0.003 25.8 9.6 96 106-209 20-130 (365)
127 PLN02389 biotin synthase 55.1 1.4E+02 0.0031 25.9 10.7 101 39-156 116-227 (379)
128 cd02932 OYE_YqiM_FMN Old yello 54.9 1.3E+02 0.0028 25.4 13.2 94 83-184 219-319 (336)
129 TIGR00035 asp_race aspartate r 54.9 1.1E+02 0.0023 24.4 9.1 62 107-169 15-88 (229)
130 TIGR01228 hutU urocanate hydra 54.8 40 0.00086 30.4 6.0 115 48-176 109-245 (545)
131 PRK05692 hydroxymethylglutaryl 54.0 1E+02 0.0023 25.6 8.3 99 35-150 148-259 (287)
132 PLN02746 hydroxymethylglutaryl 53.9 1E+02 0.0022 26.5 8.3 115 34-174 189-317 (347)
133 PRK13015 3-dehydroquinate dehy 53.9 80 0.0017 23.6 6.7 80 105-191 25-106 (146)
134 PF04481 DUF561: Protein of un 53.9 51 0.0011 26.5 5.9 107 39-155 24-145 (242)
135 PLN00191 enolase 53.6 1.7E+02 0.0036 26.3 9.9 95 106-209 295-392 (457)
136 cd00466 DHQase_II Dehydroquina 53.6 69 0.0015 23.7 6.3 80 105-191 23-104 (140)
137 PRK00208 thiG thiazole synthas 53.5 1.2E+02 0.0027 24.7 15.9 104 105-210 72-180 (250)
138 PRK05406 LamB/YcsF family prot 52.8 64 0.0014 26.3 6.5 81 25-122 13-95 (246)
139 TIGR00737 nifR3_yhdG putative 52.7 1.4E+02 0.003 25.1 12.6 132 40-184 73-221 (319)
140 PRK13352 thiamine biosynthesis 52.0 76 0.0017 28.0 7.2 107 39-164 74-185 (431)
141 cd04734 OYE_like_3_FMN Old yel 51.6 1.5E+02 0.0033 25.2 14.8 94 83-184 206-314 (343)
142 COG1751 Uncharacterized conser 51.6 63 0.0014 24.5 5.8 108 39-162 11-130 (186)
143 COG0218 Predicted GTPase [Gene 50.5 1.2E+02 0.0027 23.9 8.3 101 41-154 90-198 (200)
144 TIGR03822 AblA_like_2 lysine-2 50.3 1.6E+02 0.0034 24.9 13.0 123 39-175 119-252 (321)
145 cd04747 OYE_like_5_FMN Old yel 50.1 1.7E+02 0.0037 25.3 14.3 96 83-182 209-325 (361)
146 PF13378 MR_MLE_C: Enolase C-t 49.6 19 0.0004 25.0 2.8 47 163-209 3-50 (111)
147 PRK12569 hypothetical protein; 49.4 82 0.0018 25.7 6.6 84 25-123 14-99 (245)
148 PF01175 Urocanase: Urocanase; 49.3 46 0.001 30.1 5.6 126 48-187 108-258 (546)
149 PRK00077 eno enolase; Provisio 49.3 1.9E+02 0.0041 25.6 10.0 95 106-209 261-360 (425)
150 COG0135 TrpF Phosphoribosylant 48.8 45 0.00097 26.5 5.0 101 39-166 10-111 (208)
151 cd02933 OYE_like_FMN Old yello 48.2 1.7E+02 0.0038 24.9 14.4 94 87-184 220-313 (338)
152 TIGR03217 4OH_2_O_val_ald 4-hy 47.9 1.8E+02 0.0038 24.8 14.9 49 38-86 20-79 (333)
153 COG2355 Zn-dependent dipeptida 47.9 1.6E+02 0.0035 24.9 8.4 107 42-164 149-260 (313)
154 PF01118 Semialdhyde_dh: Semia 47.8 30 0.00065 24.4 3.7 28 39-66 74-101 (121)
155 PF07476 MAAL_C: Methylasparta 47.5 37 0.00079 27.4 4.3 97 107-208 87-192 (248)
156 KOG2264 Exostosin EXT1L [Signa 47.0 43 0.00093 30.8 5.1 57 68-140 632-690 (907)
157 TIGR02026 BchE magnesium-proto 47.0 2.2E+02 0.0047 25.6 10.4 100 106-209 222-340 (497)
158 TIGR03217 4OH_2_O_val_ald 4-hy 46.9 1.8E+02 0.0039 24.7 10.2 99 105-209 20-131 (333)
159 PRK08195 4-hyroxy-2-oxovalerat 46.7 1.8E+02 0.004 24.7 17.1 25 38-62 21-45 (337)
160 TIGR01928 menC_lowGC/arch o-su 46.5 1.8E+02 0.0038 24.5 15.3 144 40-209 132-278 (324)
161 TIGR01088 aroQ 3-dehydroquinat 46.1 1.1E+02 0.0023 22.8 6.2 80 105-191 23-104 (141)
162 PRK11613 folP dihydropteroate 45.9 1.7E+02 0.0038 24.3 8.3 97 107-210 36-138 (282)
163 cd05560 Xcc1710_like Xcc1710_l 45.3 65 0.0014 22.6 5.0 17 195-211 69-85 (109)
164 COG3623 SgaU Putative L-xylulo 45.0 43 0.00093 27.3 4.3 75 16-92 65-155 (287)
165 KOG0059 Lipid exporter ABCA1 a 45.0 1.3E+02 0.0029 29.3 8.5 67 107-175 671-766 (885)
166 PRK08776 cystathionine gamma-s 44.9 1.3E+02 0.0028 26.3 7.8 67 143-209 111-179 (405)
167 PF00072 Response_reg: Respons 44.6 92 0.002 20.7 5.8 62 123-187 40-103 (112)
168 cd01297 D-aminoacylase D-amino 44.5 2.1E+02 0.0046 24.8 11.5 123 42-176 167-298 (415)
169 cd00959 DeoC 2-deoxyribose-5-p 44.4 1.5E+02 0.0032 23.0 7.6 75 40-125 129-203 (203)
170 TIGR00539 hemN_rel putative ox 43.8 2.1E+02 0.0045 24.5 9.7 25 107-132 165-189 (360)
171 PF01904 DUF72: Protein of unk 43.8 1.7E+02 0.0036 23.4 11.1 94 56-154 19-113 (230)
172 TIGR03699 mena_SCO4550 menaqui 43.6 2E+02 0.0043 24.3 9.0 120 39-172 72-214 (340)
173 cd00739 DHPS DHPS subgroup of 43.4 1.8E+02 0.0039 23.7 10.2 24 143-166 186-209 (257)
174 cd03313 enolase Enolase: Enola 43.0 2.3E+02 0.005 24.8 10.1 95 106-209 261-360 (408)
175 COG2949 SanA Uncharacterized m 42.9 1.7E+02 0.0038 23.4 7.9 97 109-211 76-179 (235)
176 TIGR01163 rpe ribulose-phospha 42.7 1.5E+02 0.0033 22.7 9.8 98 107-208 9-107 (210)
177 PRK05395 3-dehydroquinate dehy 42.3 1.1E+02 0.0024 22.8 5.9 80 105-191 25-106 (146)
178 PF05049 IIGP: Interferon-indu 42.1 83 0.0018 27.4 6.0 81 69-149 128-214 (376)
179 cd00945 Aldolase_Class_I Class 42.1 1.5E+02 0.0032 22.3 9.5 47 40-95 11-58 (201)
180 TIGR02631 xylA_Arthro xylose i 42.0 2.3E+02 0.0051 24.6 12.8 40 23-62 8-52 (382)
181 TIGR00262 trpA tryptophan synt 41.7 1.9E+02 0.0042 23.5 9.4 67 141-209 71-144 (256)
182 cd07938 DRE_TIM_HMGL 3-hydroxy 41.7 1.2E+02 0.0025 25.1 6.7 95 110-209 20-131 (274)
183 TIGR00284 dihydropteroate synt 41.6 2.7E+02 0.0059 25.3 11.3 93 109-211 165-257 (499)
184 PF13407 Peripla_BP_4: Peripla 41.6 1.1E+02 0.0023 24.0 6.4 63 108-176 13-79 (257)
185 cd07937 DRE_TIM_PC_TC_5S Pyruv 41.1 2E+02 0.0044 23.6 14.5 26 38-63 17-42 (275)
186 PRK06256 biotin synthase; Vali 40.6 2.2E+02 0.0048 23.9 11.0 118 39-174 91-222 (336)
187 TIGR01060 eno phosphopyruvate 40.6 2.6E+02 0.0056 24.7 9.8 94 107-209 263-361 (425)
188 PRK10551 phage resistance prot 40.5 1.6E+02 0.0034 26.8 7.8 96 111-210 366-472 (518)
189 cd03174 DRE_TIM_metallolyase D 40.4 1.9E+02 0.0041 23.1 14.2 27 38-64 15-41 (265)
190 TIGR02351 thiH thiazole biosyn 40.3 2.4E+02 0.0052 24.2 10.1 103 39-157 103-216 (366)
191 PRK14461 ribosomal RNA large s 39.5 2E+02 0.0044 25.0 7.9 79 130-209 232-345 (371)
192 cd00405 PRAI Phosphoribosylant 39.5 1.2E+02 0.0026 23.4 6.2 66 120-187 16-82 (203)
193 cd04735 OYE_like_4_FMN Old yel 39.3 2.4E+02 0.0053 24.0 12.6 91 84-182 214-310 (353)
194 TIGR01182 eda Entner-Doudoroff 39.1 1E+02 0.0022 24.3 5.7 42 39-82 17-58 (204)
195 COG2159 Predicted metal-depend 39.1 1.8E+02 0.0039 24.2 7.5 91 119-209 55-161 (293)
196 PRK15440 L-rhamnonate dehydrat 38.9 1.1E+02 0.0025 26.6 6.5 67 143-209 246-316 (394)
197 PRK07328 histidinol-phosphatas 38.8 2.1E+02 0.0046 23.2 13.7 153 43-209 19-225 (269)
198 PRK05458 guanosine 5'-monophos 38.7 2.1E+02 0.0045 24.4 7.8 124 78-210 17-145 (326)
199 KOG0259 Tyrosine aminotransfer 38.7 2.8E+02 0.006 24.5 13.8 140 40-210 79-237 (447)
200 PRK06552 keto-hydroxyglutarate 38.6 1.3E+02 0.0028 23.8 6.3 48 39-88 22-70 (213)
201 COG4555 NatA ABC-type Na+ tran 38.6 1.6E+02 0.0035 23.7 6.5 68 106-175 105-201 (245)
202 PRK07114 keto-hydroxyglutarate 38.4 2.1E+02 0.0045 22.9 9.2 88 108-209 26-116 (222)
203 TIGR01428 HAD_type_II 2-haloal 38.3 1.1E+02 0.0023 23.3 5.7 64 111-176 61-128 (198)
204 PRK15454 ethanol dehydrogenase 37.7 2.8E+02 0.006 24.2 9.6 96 64-175 31-126 (395)
205 PRK05718 keto-hydroxyglutarate 37.5 1.3E+02 0.0028 23.9 6.1 86 107-209 25-112 (212)
206 PRK07945 hypothetical protein; 37.5 2.6E+02 0.0056 23.8 16.3 149 42-209 111-288 (335)
207 KOG1549 Cysteine desulfurase N 37.5 1.5E+02 0.0034 26.2 6.9 65 143-209 143-215 (428)
208 PTZ00081 enolase; Provisional 37.4 3E+02 0.0065 24.5 9.7 95 106-209 281-380 (439)
209 COG1131 CcmA ABC-type multidru 37.3 1.2E+02 0.0025 25.3 6.1 49 126-175 154-205 (293)
210 PF00465 Fe-ADH: Iron-containi 37.2 1.3E+02 0.0029 25.6 6.6 93 64-174 5-97 (366)
211 PF01487 DHquinase_I: Type I 3 37.1 2.1E+02 0.0045 22.5 10.2 132 25-173 60-191 (224)
212 PF04084 ORC2: Origin recognit 37.0 1.6E+02 0.0035 25.0 7.0 110 51-164 50-176 (326)
213 PF10087 DUF2325: Uncharacteri 36.6 1.3E+02 0.0029 20.2 5.7 39 169-209 41-79 (97)
214 PLN02540 methylenetetrahydrofo 36.2 3.5E+02 0.0077 25.0 13.9 149 42-206 15-196 (565)
215 PF07555 NAGidase: beta-N-acet 36.0 93 0.002 26.3 5.3 100 34-164 7-112 (306)
216 PF11372 DUF3173: Domain of un 36.0 45 0.00098 20.8 2.6 21 40-60 15-39 (59)
217 TIGR03569 NeuB_NnaB N-acetylne 35.9 2.8E+02 0.006 23.7 10.8 131 38-188 72-226 (329)
218 PF01220 DHquinase_II: Dehydro 35.8 1.2E+02 0.0027 22.4 5.3 80 106-192 25-106 (140)
219 PRK01222 N-(5'-phosphoribosyl) 35.5 1.5E+02 0.0032 23.4 6.1 48 107-165 65-112 (210)
220 COG0757 AroQ 3-dehydroquinate 35.4 1.9E+02 0.004 21.5 7.2 81 105-192 24-106 (146)
221 COG3215 PilZ Tfp pilus assembl 35.3 1.6E+02 0.0034 20.7 5.8 84 40-125 18-111 (117)
222 cd07944 DRE_TIM_HOA_like 4-hyd 35.2 2.5E+02 0.0054 23.0 14.3 27 38-64 16-42 (266)
223 PRK10415 tRNA-dihydrouridine s 34.9 2.8E+02 0.006 23.4 11.4 133 40-184 75-223 (321)
224 PRK07114 keto-hydroxyglutarate 34.8 1.1E+02 0.0025 24.4 5.4 37 39-77 24-60 (222)
225 TIGR01212 radical SAM protein, 34.8 2.7E+02 0.0058 23.2 8.8 64 106-173 91-156 (302)
226 cd00452 KDPG_aldolase KDPG and 34.8 2.1E+02 0.0045 21.9 15.1 111 39-184 13-123 (190)
227 PF01207 Dus: Dihydrouridine s 34.7 2.7E+02 0.0059 23.3 9.0 131 40-182 64-210 (309)
228 cd03328 MR_like_3 Mandelate ra 34.7 2.9E+02 0.0063 23.5 14.8 148 40-209 138-290 (352)
229 cd07945 DRE_TIM_CMS Leptospira 34.2 2.7E+02 0.0058 23.0 10.5 66 44-122 117-189 (280)
230 COG0800 Eda 2-keto-3-deoxy-6-p 34.1 1.5E+02 0.0033 23.6 5.8 79 115-209 30-110 (211)
231 TIGR02090 LEU1_arch isopropylm 34.0 3.1E+02 0.0066 23.6 8.8 97 105-209 18-129 (363)
232 cd04742 NPD_FabD 2-Nitropropan 33.8 1.5E+02 0.0033 26.2 6.4 84 119-209 7-99 (418)
233 PRK07535 methyltetrahydrofolat 33.6 2.7E+02 0.0058 22.8 10.1 26 141-166 173-200 (261)
234 COG3737 Uncharacterized conser 33.5 99 0.0021 22.3 4.3 46 166-211 56-102 (127)
235 PRK04452 acetyl-CoA decarbonyl 33.5 3E+02 0.0066 23.4 9.5 90 117-211 83-181 (319)
236 PRK13753 dihydropteroate synth 33.5 2.8E+02 0.0061 23.1 10.4 96 107-210 23-124 (279)
237 cd01573 modD_like ModD; Quinol 33.2 1.4E+02 0.0031 24.6 5.9 63 145-210 171-235 (272)
238 PF01890 CbiG_C: Cobalamin syn 33.2 1.2E+02 0.0025 21.7 4.8 63 105-174 11-73 (121)
239 cd05125 Mth938_2P1-like Mth938 33.2 1.2E+02 0.0027 21.4 4.8 16 195-210 71-86 (114)
240 PRK10060 RNase II stability mo 33.0 3.9E+02 0.0085 24.9 9.4 67 141-210 540-616 (663)
241 PRK12558 glutamyl-tRNA synthet 32.9 99 0.0021 27.6 5.2 58 107-172 49-106 (445)
242 cd03326 MR_like_1 Mandelate ra 32.9 3.3E+02 0.0071 23.6 12.6 148 40-207 160-313 (385)
243 TIGR02090 LEU1_arch isopropylm 32.5 3.2E+02 0.007 23.4 10.5 26 38-63 18-43 (363)
244 TIGR00677 fadh2_euk methylenet 32.4 2.9E+02 0.0063 22.9 13.3 150 41-207 15-189 (281)
245 TIGR02660 nifV_homocitr homoci 32.0 3.3E+02 0.0072 23.4 9.1 25 38-62 19-43 (365)
246 COG0274 DeoC Deoxyribose-phosp 31.9 2.7E+02 0.0059 22.4 7.9 75 40-126 138-213 (228)
247 TIGR01496 DHPS dihydropteroate 31.8 2.8E+02 0.0062 22.6 12.2 48 119-166 157-207 (257)
248 TIGR01278 DPOR_BchB light-inde 31.6 3.9E+02 0.0085 24.2 9.6 100 70-183 69-193 (511)
249 PRK00915 2-isopropylmalate syn 31.6 4E+02 0.0086 24.2 10.9 26 38-63 22-47 (513)
250 PRK06015 keto-hydroxyglutarate 31.6 1.5E+02 0.0032 23.4 5.5 41 39-81 13-53 (201)
251 PRK14468 ribosomal RNA large s 31.6 3.2E+02 0.0069 23.4 7.9 74 103-176 118-199 (343)
252 PF08013 Tagatose_6_P_K: Tagat 31.1 62 0.0013 28.5 3.5 109 17-125 78-213 (424)
253 cd02070 corrinoid_protein_B12- 31.1 2.5E+02 0.0054 21.7 11.9 22 39-60 8-29 (201)
254 PRK05968 hypothetical protein; 30.8 2.6E+02 0.0057 24.1 7.5 45 165-209 136-181 (389)
255 COG2256 MGS1 ATPase related to 30.2 3.1E+02 0.0066 24.4 7.5 103 46-167 37-143 (436)
256 PF10171 DUF2366: Uncharacteri 30.0 1.1E+02 0.0023 23.6 4.3 51 107-164 65-115 (173)
257 COG1104 NifS Cysteine sulfinat 30.0 1E+02 0.0022 26.9 4.7 67 141-209 101-175 (386)
258 COG0677 WecC UDP-N-acetyl-D-ma 29.9 1.8E+02 0.004 25.7 6.1 69 107-176 134-219 (436)
259 PF13380 CoA_binding_2: CoA bi 29.9 2E+02 0.0043 20.2 6.4 52 125-209 54-106 (116)
260 PRK08207 coproporphyrinogen II 29.7 3.5E+02 0.0076 24.4 8.2 26 107-133 334-359 (488)
261 PRK14040 oxaloacetate decarbox 29.7 4.7E+02 0.01 24.4 15.2 25 37-61 22-46 (593)
262 PF12728 HTH_17: Helix-turn-he 29.6 1.1E+02 0.0024 17.6 3.6 31 145-175 15-48 (51)
263 PRK07027 cobalamin biosynthesi 29.6 1.2E+02 0.0026 21.8 4.3 62 105-173 13-74 (126)
264 cd08319 Death_RAIDD Death doma 29.5 86 0.0019 20.9 3.3 65 108-178 9-73 (83)
265 PRK14463 ribosomal RNA large s 29.4 2.6E+02 0.0056 24.0 7.0 70 104-175 129-203 (349)
266 TIGR02455 TreS_stutzeri trehal 29.4 1.3E+02 0.0027 28.4 5.3 139 53-207 112-289 (688)
267 cd05126 Mth938 Mth938 domain. 29.2 1.9E+02 0.0041 20.6 5.3 49 162-211 43-92 (117)
268 TIGR00742 yjbN tRNA dihydrouri 28.7 3.6E+02 0.0078 22.8 10.0 126 40-175 65-215 (318)
269 cd03324 rTSbeta_L-fuconate_deh 28.4 4.1E+02 0.0089 23.4 14.3 149 40-209 196-349 (415)
270 TIGR02814 pfaD_fam PfaD family 28.2 2.3E+02 0.005 25.3 6.6 64 145-209 33-104 (444)
271 PRK13361 molybdenum cofactor b 28.2 3.6E+02 0.0079 22.6 14.9 120 38-176 44-178 (329)
272 COG1523 PulA Type II secretory 28.1 35 0.00075 32.2 1.6 77 115-209 205-282 (697)
273 PF00388 PI-PLC-X: Phosphatidy 28.0 43 0.00093 24.5 1.9 20 46-65 30-49 (146)
274 TIGR02080 O_succ_thio_ly O-suc 28.0 3.9E+02 0.0085 23.0 10.3 78 128-209 91-170 (382)
275 TIGR03586 PseI pseudaminic aci 28.0 3.8E+02 0.0083 22.8 11.0 129 39-188 74-225 (327)
276 COG1679 Predicted aconitase [G 27.8 4.2E+02 0.009 23.2 10.0 107 44-155 206-316 (403)
277 PLN02775 Probable dihydrodipic 27.8 3.6E+02 0.0079 22.5 7.8 71 114-188 67-138 (286)
278 cd00947 TBP_aldolase_IIB Tagat 27.5 1E+02 0.0022 25.6 4.1 86 45-148 2-89 (276)
279 PRK14465 ribosomal RNA large s 27.5 3.1E+02 0.0068 23.5 7.2 74 102-175 129-207 (342)
280 PF09639 YjcQ: YjcQ protein; 27.5 72 0.0016 21.4 2.7 24 142-165 25-48 (88)
281 TIGR00048 radical SAM enzyme, 27.5 3E+02 0.0065 23.6 7.1 80 130-209 219-326 (355)
282 COG1242 Predicted Fe-S oxidore 27.4 3.4E+02 0.0075 22.8 7.0 132 39-187 126-266 (312)
283 cd08189 Fe-ADH5 Iron-containin 27.3 4E+02 0.0087 22.9 10.8 95 64-174 8-102 (374)
284 PRK09140 2-dehydro-3-deoxy-6-p 27.3 2.1E+02 0.0046 22.5 5.8 42 39-82 19-60 (206)
285 cd00668 Ile_Leu_Val_MetRS_core 27.2 93 0.002 25.9 4.0 49 108-159 81-131 (312)
286 COG0419 SbcC ATPase involved i 27.2 1.5E+02 0.0033 28.9 5.8 55 113-169 826-885 (908)
287 cd08606 GDPD_YPL110cp_fungi Gl 27.1 3.5E+02 0.0075 22.1 12.0 29 148-176 156-184 (286)
288 COG1902 NemA NADH:flavin oxido 27.1 4.2E+02 0.009 23.0 14.4 140 38-182 138-315 (363)
289 TIGR02534 mucon_cyclo muconate 27.0 4E+02 0.0087 22.7 14.7 78 128-209 214-293 (368)
290 COG4626 Phage terminase-like p 26.9 3.6E+02 0.0077 24.8 7.6 45 137-181 408-452 (546)
291 cd02801 DUS_like_FMN Dihydrour 26.9 3.1E+02 0.0066 21.4 9.8 134 40-186 65-214 (231)
292 PF04430 DUF498: Protein of un 26.6 76 0.0017 22.1 2.8 47 165-211 39-86 (110)
293 PRK09860 putative alcohol dehy 26.4 4.2E+02 0.0092 22.9 10.3 96 64-175 13-108 (383)
294 COG0646 MetH Methionine syntha 26.4 4E+02 0.0087 22.6 11.2 97 39-135 50-165 (311)
295 PRK09454 ugpQ cytoplasmic glyc 26.4 3.4E+02 0.0073 21.7 13.8 23 40-62 20-42 (249)
296 PRK10508 hypothetical protein; 26.3 1.9E+02 0.0041 24.6 5.7 44 105-153 285-328 (333)
297 PF07905 PucR: Purine cataboli 26.1 1.9E+02 0.004 20.5 4.9 13 143-155 60-72 (123)
298 PF01876 RNase_P_p30: RNase P 26.1 1.7E+02 0.0037 21.5 4.8 52 157-208 25-77 (150)
299 TIGR02668 moaA_archaeal probab 26.1 3.7E+02 0.008 22.1 10.4 119 38-175 39-171 (302)
300 PRK08247 cystathionine gamma-s 26.1 3.5E+02 0.0077 23.0 7.4 53 157-209 116-170 (366)
301 COG0820 Predicted Fe-S-cluster 26.0 2.9E+02 0.0063 23.9 6.6 79 130-209 216-323 (349)
302 PRK11815 tRNA-dihydrouridine s 25.8 4.1E+02 0.0089 22.5 8.7 127 40-176 75-226 (333)
303 TIGR00126 deoC deoxyribose-pho 25.7 3.4E+02 0.0073 21.5 14.7 136 37-188 13-157 (211)
304 cd08556 GDPD Glycerophosphodie 25.6 2.8E+02 0.0061 20.5 12.1 145 40-210 11-165 (189)
305 TIGR01430 aden_deam adenosine 25.6 3.9E+02 0.0085 22.2 16.0 99 107-209 138-237 (324)
306 PRK15458 tagatose 6-phosphate 25.6 1.3E+02 0.0029 26.5 4.6 47 18-65 79-132 (426)
307 PF01791 DeoC: DeoC/LacD famil 25.6 3.4E+02 0.0074 21.5 7.6 130 42-187 19-168 (236)
308 COG0821 gcpE 1-hydroxy-2-methy 25.5 4.4E+02 0.0095 22.7 8.8 90 110-208 34-126 (361)
309 PRK15005 universal stress prot 25.5 2.3E+02 0.005 19.9 5.4 17 193-209 95-111 (144)
310 TIGR02082 metH 5-methyltetrahy 25.5 7.4E+02 0.016 25.3 10.5 87 121-211 379-470 (1178)
311 TIGR01521 FruBisAldo_II_B fruc 25.5 1E+02 0.0022 26.6 3.8 41 169-210 88-139 (347)
312 PRK04165 acetyl-CoA decarbonyl 25.5 4.9E+02 0.011 23.3 10.9 96 106-210 102-206 (450)
313 cd00814 MetRS_core catalytic c 25.4 1E+02 0.0022 25.9 3.9 47 108-157 68-114 (319)
314 cd03317 NAAAR N-acylamino acid 25.4 4.2E+02 0.009 22.4 14.3 142 42-209 139-283 (354)
315 PF01244 Peptidase_M19: Membra 25.4 1.1E+02 0.0023 26.0 3.9 107 42-164 160-271 (320)
316 PRK11267 biopolymer transport 25.3 2.3E+02 0.0049 20.7 5.3 55 106-165 81-135 (141)
317 PRK05339 PEP synthetase regula 25.2 3.6E+02 0.0077 22.4 6.8 74 40-130 14-90 (269)
318 PF02679 ComA: (2R)-phospho-3- 25.2 1.3E+02 0.0027 24.6 4.2 97 113-210 25-131 (244)
319 PRK15052 D-tagatose-1,6-bispho 25.0 1.4E+02 0.0031 26.3 4.7 46 18-64 76-128 (421)
320 smart00148 PLCXc Phospholipase 24.7 67 0.0014 23.4 2.3 20 45-64 31-50 (135)
321 smart00481 POLIIIAc DNA polyme 24.6 73 0.0016 19.7 2.2 15 195-209 44-58 (67)
322 TIGR02810 agaZ_gatZ D-tagatose 24.6 1.5E+02 0.0033 26.2 4.7 46 18-64 75-127 (420)
323 KOG0257 Kynurenine aminotransf 24.6 1E+02 0.0023 27.1 3.7 45 166-210 161-210 (420)
324 cd00408 DHDPS-like Dihydrodipi 24.5 3.8E+02 0.0083 21.7 12.3 29 38-66 14-42 (281)
325 TIGR00238 KamA family protein. 24.5 4.4E+02 0.0095 22.3 8.9 120 41-175 144-275 (331)
326 COG0800 Eda 2-keto-3-deoxy-6-p 24.4 2.5E+02 0.0054 22.4 5.5 41 40-82 23-63 (211)
327 TIGR00973 leuA_bact 2-isopropy 24.4 5.3E+02 0.012 23.3 10.5 26 38-63 19-44 (494)
328 COG3454 Metal-dependent hydrol 24.4 58 0.0013 27.9 2.1 64 141-209 141-227 (377)
329 PRK10826 2-deoxyglucose-6-phos 24.3 3E+02 0.0065 21.3 6.2 65 141-206 94-163 (222)
330 PRK11059 regulatory protein Cs 24.2 5.2E+02 0.011 23.9 8.6 67 141-210 532-608 (640)
331 PRK05835 fructose-bisphosphate 24.2 1.3E+02 0.0028 25.4 4.2 14 44-57 5-18 (307)
332 PF01408 GFO_IDH_MocA: Oxidore 24.2 2.1E+02 0.0045 19.5 4.8 61 148-209 54-117 (120)
333 cd08192 Fe-ADH7 Iron-containin 24.1 4.6E+02 0.0099 22.4 10.5 94 65-174 7-100 (370)
334 COG0623 FabI Enoyl-[acyl-carri 24.1 1.4E+02 0.003 24.4 4.1 112 40-172 17-128 (259)
335 PRK14466 ribosomal RNA large s 23.9 2.9E+02 0.0062 23.8 6.3 81 104-188 129-215 (345)
336 PRK14460 ribosomal RNA large s 23.9 4.7E+02 0.01 22.5 8.1 73 104-176 128-211 (354)
337 PRK09462 fur ferric uptake reg 23.8 90 0.0019 22.9 2.9 27 138-164 49-75 (148)
338 KOG1892 Actin filament-binding 23.8 46 0.001 32.6 1.6 36 109-144 7-42 (1629)
339 PRK07003 DNA polymerase III su 23.7 4.4E+02 0.0096 25.6 7.9 95 108-208 101-198 (830)
340 PRK12383 putative mutase; Prov 23.7 3.9E+02 0.0085 23.6 7.2 80 129-211 151-250 (406)
341 COG2877 KdsA 3-deoxy-D-manno-o 23.6 3.4E+02 0.0074 22.2 6.2 90 109-207 34-133 (279)
342 PRK05588 histidinol-phosphatas 23.5 3.9E+02 0.0084 21.4 9.8 104 42-160 16-142 (255)
343 KOG1939 Oxoprolinase [Amino ac 23.4 2.9E+02 0.0063 26.9 6.5 59 37-97 163-225 (1247)
344 TIGR01329 cysta_beta_ly_E cyst 23.3 4.4E+02 0.0095 22.6 7.5 66 144-209 98-165 (378)
345 PF05913 DUF871: Bacterial pro 23.2 1.1E+02 0.0024 26.4 3.7 153 40-211 12-175 (357)
346 KOG2733 Uncharacterized membra 23.2 1.1E+02 0.0024 26.6 3.6 50 46-97 100-149 (423)
347 PLN02951 Molybderin biosynthes 23.1 4.9E+02 0.011 22.5 8.4 127 39-189 90-239 (373)
348 COG0809 QueA S-adenosylmethion 23.1 54 0.0012 28.0 1.7 66 141-211 185-255 (348)
349 TIGR01108 oadA oxaloacetate de 23.1 4.7E+02 0.01 24.2 7.9 103 106-209 18-135 (582)
350 PF00563 EAL: EAL domain; Int 23.0 43 0.00092 26.0 1.1 65 143-210 135-208 (236)
351 PRK04930 glutathione-regulated 23.0 3.6E+02 0.0078 20.8 6.4 33 105-137 126-158 (184)
352 COG1210 GalU UDP-glucose pyrop 23.0 1.1E+02 0.0024 25.5 3.4 38 21-58 9-52 (291)
353 PF06506 PrpR_N: Propionate ca 23.0 1.5E+02 0.0033 22.4 4.1 64 141-209 63-129 (176)
354 PRK11359 cyclic-di-GMP phospho 23.0 4.5E+02 0.0098 24.7 8.1 67 141-210 677-753 (799)
355 PRK09195 gatY tagatose-bisphos 22.9 1.4E+02 0.003 24.9 4.1 69 44-125 6-76 (284)
356 PRK08649 inosine 5-monophospha 22.9 4.2E+02 0.0092 23.0 7.2 70 141-210 117-192 (368)
357 TIGR03278 methan_mark_10 putat 22.8 5.3E+02 0.011 22.7 8.5 83 106-190 54-140 (404)
358 PRK05904 coproporphyrinogen II 22.8 4.9E+02 0.011 22.3 9.1 111 46-167 104-238 (353)
359 COG2200 Rtn c-di-GMP phosphodi 22.7 4.1E+02 0.0089 21.4 8.1 127 71-210 69-211 (256)
360 COG2987 HutU Urocanate hydrata 22.7 2.6E+02 0.0057 25.2 5.8 56 120-182 205-261 (561)
361 COG1126 GlnQ ABC-type polar am 22.7 3.8E+02 0.0083 21.7 6.3 60 105-166 107-195 (240)
362 PRK08072 nicotinate-nucleotide 22.7 4.5E+02 0.0097 21.8 7.1 41 144-185 174-215 (277)
363 PF01116 F_bP_aldolase: Fructo 22.7 1.1E+02 0.0025 25.4 3.6 123 43-210 4-132 (287)
364 PRK09413 IS2 repressor TnpA; R 22.7 96 0.0021 22.0 2.8 43 38-82 12-54 (121)
365 PRK11024 colicin uptake protei 22.6 2.5E+02 0.0054 20.4 5.1 52 107-163 86-137 (141)
366 TIGR01660 narH nitrate reducta 22.6 43 0.00094 30.0 1.1 53 155-207 264-317 (492)
367 cd08190 HOT Hydroxyacid-oxoaci 22.5 5.3E+02 0.011 22.6 10.9 94 65-174 6-99 (414)
368 COG2875 CobM Precorrin-4 methy 22.4 3.2E+02 0.007 22.3 5.8 81 126-207 75-161 (254)
369 COG0352 ThiE Thiamine monophos 22.4 1.6E+02 0.0036 23.3 4.2 27 148-176 97-123 (211)
370 PRK12737 gatY tagatose-bisphos 22.3 1.4E+02 0.0031 24.8 4.1 69 44-125 6-76 (284)
371 PF14213 DUF4325: Domain of un 22.3 1.8E+02 0.0038 18.6 3.8 43 42-84 4-49 (74)
372 TIGR01188 drrA daunorubicin re 22.3 4.5E+02 0.0097 21.7 8.5 46 126-173 142-190 (302)
373 TIGR01927 menC_gamma/gm+ o-suc 22.3 4.6E+02 0.01 21.8 8.7 64 146-209 196-261 (307)
374 PRK12738 kbaY tagatose-bisphos 22.3 1.5E+02 0.0032 24.8 4.1 69 44-125 6-76 (286)
375 cd02742 GH20_hexosaminidase Be 22.2 97 0.0021 25.9 3.1 43 167-209 18-89 (303)
376 PF09391 DUF2000: Protein of u 22.2 2.2E+02 0.0048 20.8 4.6 47 40-86 62-108 (133)
377 PRK10200 putative racemase; Pr 22.1 4.1E+02 0.0089 21.1 8.9 62 107-169 15-88 (230)
378 PF01680 SOR_SNZ: SOR/SNZ fami 22.1 51 0.0011 25.6 1.3 14 117-130 87-100 (208)
379 COG0731 Fe-S oxidoreductases [ 22.0 2.4E+02 0.0052 23.7 5.3 53 134-186 150-211 (296)
380 KOG0173 20S proteasome, regula 22.0 85 0.0018 25.6 2.5 25 33-57 177-201 (271)
381 cd02931 ER_like_FMN Enoate red 22.0 5.2E+02 0.011 22.3 14.6 38 145-182 294-332 (382)
382 PRK08508 biotin synthase; Prov 21.8 4.5E+02 0.0098 21.5 10.2 22 39-60 40-61 (279)
383 TIGR01108 oadA oxaloacetate de 21.7 6.5E+02 0.014 23.4 14.0 25 38-62 17-41 (582)
384 KOG2741 Dimeric dihydrodiol de 21.7 2.5E+02 0.0055 24.2 5.4 15 195-209 113-127 (351)
385 PRK06233 hypothetical protein; 21.6 5.3E+02 0.011 22.3 9.3 43 107-153 314-365 (372)
386 PRK07671 cystathionine beta-ly 21.6 5.2E+02 0.011 22.2 7.7 45 165-209 122-168 (377)
387 TIGR00433 bioB biotin syntheta 21.6 4.5E+02 0.0097 21.4 9.3 119 39-174 62-193 (296)
388 PF00762 Ferrochelatase: Ferro 21.5 2.1E+02 0.0047 24.1 5.1 52 108-160 206-258 (316)
389 PRK13238 tnaA tryptophanase/L- 21.4 1.5E+02 0.0032 26.5 4.2 46 165-210 161-216 (460)
390 TIGR01290 nifB nitrogenase cof 21.3 5.2E+02 0.011 23.0 7.6 82 104-190 58-145 (442)
391 PRK08084 DNA replication initi 21.3 4E+02 0.0088 21.1 6.5 44 127-170 98-145 (235)
392 COG4948 L-alanine-DL-glutamate 21.3 5.2E+02 0.011 22.0 14.2 150 40-210 143-295 (372)
393 PRK06806 fructose-bisphosphate 21.3 1.6E+02 0.0035 24.4 4.2 69 44-125 6-76 (281)
394 PHA01346 hypothetical protein 21.2 1.2E+02 0.0026 17.6 2.3 21 104-124 30-50 (53)
395 COG4943 Predicted signal trans 20.9 5.6E+02 0.012 23.4 7.5 127 70-210 340-476 (524)
396 PRK09196 fructose-1,6-bisphosp 20.9 1.4E+02 0.0031 25.7 3.8 40 170-210 91-141 (347)
397 TIGR03858 LLM_2I7G probable ox 20.9 2.8E+02 0.0061 23.4 5.7 44 106-152 286-329 (337)
398 cd01301 rDP_like renal dipepti 20.9 5.1E+02 0.011 21.8 8.9 107 42-164 154-263 (309)
399 PRK14457 ribosomal RNA large s 20.8 5.4E+02 0.012 22.1 9.2 72 104-176 127-202 (345)
400 PRK14040 oxaloacetate decarbox 20.8 5.8E+02 0.012 23.8 8.0 101 107-208 25-140 (593)
401 PRK05660 HemN family oxidoredu 20.8 5.5E+02 0.012 22.1 9.3 62 106-172 72-135 (378)
402 PRK13399 fructose-1,6-bisphosp 20.8 1.5E+02 0.0032 25.6 3.9 33 178-210 98-141 (347)
403 PF02629 CoA_binding: CoA bind 20.7 1.3E+02 0.0029 20.1 3.1 21 39-59 70-90 (96)
404 TIGR03820 lys_2_3_AblA lysine- 20.7 6E+02 0.013 22.5 10.5 122 39-175 138-270 (417)
405 PRK12323 DNA polymerase III su 20.5 4.3E+02 0.0092 25.2 7.0 62 107-170 105-168 (700)
406 TIGR00973 leuA_bact 2-isopropy 20.4 5.7E+02 0.012 23.1 7.8 31 36-66 140-170 (494)
407 PF08727 P3A: Poliovirus 3A pr 20.4 61 0.0013 20.0 1.1 15 194-208 29-43 (57)
408 TIGR03849 arch_ComA phosphosul 20.4 3.1E+02 0.0068 22.2 5.5 95 113-209 12-117 (237)
409 PF08671 SinI: Anti-repressor 20.4 1.3E+02 0.0028 15.9 2.3 16 42-57 3-18 (30)
410 PLN02231 alanine transaminase 20.3 5.1E+02 0.011 23.6 7.5 24 141-164 255-279 (534)
411 cd00812 LeuRS_core catalytic c 20.3 1.6E+02 0.0034 24.7 4.0 50 108-158 68-117 (314)
412 PRK00366 ispG 4-hydroxy-3-meth 20.3 5.8E+02 0.012 22.2 9.5 94 107-208 37-133 (360)
413 PRK14461 ribosomal RNA large s 20.2 3.1E+02 0.0068 23.9 5.8 76 101-176 130-224 (371)
414 PRK11613 folP dihydropteroate 20.1 5.1E+02 0.011 21.5 12.3 48 119-166 172-222 (282)
415 TIGR01858 tag_bisphos_ald clas 20.0 1.8E+02 0.0039 24.3 4.2 69 44-125 4-74 (282)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-51 Score=344.14 Aligned_cols=201 Identities=43% Similarity=0.670 Sum_probs=182.5
Q ss_pred CCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC-CCcEE
Q 028240 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQ 87 (211)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~-r~~~~ 87 (211)
|+++++|++|++||+||||||.+|+.+ ...+.+++.++|++|+++||||||||+.||.|.||+++|++|++.+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 678999999999999999999998752 2345567888999999999999999999999999999999999876 89999
Q ss_pred EEeccccccCCCccc-ccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCC
Q 028240 88 VATKFGFVELGFTSV-IVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 88 i~tK~~~~~~~~~~~-~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
|+||++.....+... ..+.++++|+++++.||+|||+||||+|++|+||+..+.++++++|.+|+++|+||++|+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999998765432111 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CCceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 167 PDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 167 ~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
++++.++++. .+++++|.+||+++|..+.+++++|+++||++++
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~ 204 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLA 204 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEE
Confidence 9999999998 5999999999999988777799999999999986
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.6e-48 Score=319.21 Aligned_cols=203 Identities=45% Similarity=0.723 Sum_probs=183.7
Q ss_pred cCCCCCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc--CC
Q 028240 5 KKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LP 82 (211)
Q Consensus 5 ~~~~~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~--~~ 82 (211)
....|+|+++|++|++||++|||+|.+.. |+...+++++++++++|+++|+||||||+.||+|.||..+|+++++ .+
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~ 86 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWR 86 (336)
T ss_pred chhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCc
Confidence 34567899999999999999999974433 4445899999999999999999999999999999999999999998 56
Q ss_pred CCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEe
Q 028240 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 162 (211)
Q Consensus 83 r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 162 (211)
|++++|+||++..... ..+...+..++.+.++.|+++|+++|||+||+||+|+..++++++++|.+++++|+|||||+
T Consensus 87 R~~vviaTK~~~~~~~--~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGl 164 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYGG--ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGL 164 (336)
T ss_pred CCcEEEEEEEeccCCC--cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEe
Confidence 9999999999876522 12455688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCC--ceEEeccCCccccCc-hhhHHHHHHHcCCeeee
Q 028240 163 SEASPDTIRRAHAVHP--ITAVQLEWSLWARDI-ENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 163 s~~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~a 210 (211)
|+++++++.++.+..+ |.++|++||+++|.. +.++++.|++.||++++
T Consensus 165 Se~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ 215 (336)
T KOG1575|consen 165 SEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIA 215 (336)
T ss_pred ccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEE
Confidence 9999999999999887 999999999999994 44599999999999986
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.4e-47 Score=309.93 Aligned_cols=179 Identities=32% Similarity=0.526 Sum_probs=160.6
Q ss_pred CeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc--CCCCcEE
Q 028240 10 PRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQ 87 (211)
Q Consensus 10 ~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~--~~r~~~~ 87 (211)
.+.++ ++|.+||.||||||++++ .+.+.+++.+|++.|+|+||||..|| ||+.+|+++++ ++|+++|
T Consensus 4 ~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~ReelF 72 (280)
T COG0656 4 TKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREELF 72 (280)
T ss_pred ceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHeE
Confidence 45677 567889999999998753 13388999999999999999999999 99999999997 7899999
Q ss_pred EEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCcccEEEeCCC
Q 028240 88 VATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEA 165 (211)
Q Consensus 88 i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (211)
|+||+|... .+++.+.+++++||++||+||+|||++|||.+. ..+.++|++|++++++|+||+||||||
T Consensus 73 ittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF 143 (280)
T COG0656 73 ITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNF 143 (280)
T ss_pred EEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCC
Confidence 999999753 368999999999999999999999999999763 337899999999999999999999999
Q ss_pred CHHHHHHHhccC--CceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 166 SPDTIRRAHAVH--PITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 166 ~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+.++++++++.. .|+++|++||++.+.. +++++|+++||.|+|
T Consensus 144 ~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~A 188 (280)
T COG0656 144 GVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEA 188 (280)
T ss_pred CHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEE
Confidence 999999998774 5899999999999965 499999999999987
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.9e-46 Score=317.41 Aligned_cols=202 Identities=28% Similarity=0.463 Sum_probs=173.8
Q ss_pred cCCCCCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCC--CcHHHHHHHHHhcC-
Q 028240 5 KKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKEL- 81 (211)
Q Consensus 5 ~~~~~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~~E~~lG~~l~~~- 81 (211)
.+.+|++++||++|++||+||||||+. ++...+.+++.++|++|++.|||+||||+.||+ |.+|+.+|++|++.
T Consensus 9 ~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~ 85 (346)
T PRK09912 9 RYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF 85 (346)
T ss_pred CCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc
Confidence 456799999999999999999999962 232346678899999999999999999999995 89999999999863
Q ss_pred --CCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccE
Q 028240 82 --PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (211)
Q Consensus 82 --~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (211)
+|++++|+||++....+. ......+++++++++++||++||+||||+|++|+|++..+++++|++|++|+++|+||+
T Consensus 86 ~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~ 164 (346)
T PRK09912 86 AAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALY 164 (346)
T ss_pred cCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 599999999997531111 11124579999999999999999999999999999988889999999999999999999
Q ss_pred EEeCCCCHHHHHHHhcc-----CCceEEeccCCccccCch-hhHHHHHHHcCCeeee
Q 028240 160 IGLSEASPDTIRRAHAV-----HPITAVQLEWSLWARDIE-NEIVPLCRFVRLAVKS 210 (211)
Q Consensus 160 iGvs~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a 210 (211)
||||||++++++++.+. .++.++|++||++++..+ .+++++|+++||+|+|
T Consensus 165 iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via 221 (346)
T PRK09912 165 VGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIA 221 (346)
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEE
Confidence 99999999988866542 367899999999998754 4699999999999987
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.5e-46 Score=313.58 Aligned_cols=195 Identities=29% Similarity=0.414 Sum_probs=170.4
Q ss_pred eeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc--CCCCcEEE
Q 028240 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (211)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~--~~r~~~~i 88 (211)
||+||++|++||+||||||++. +...+.+++.++++.|+++|||+||||+.||.|.||+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 4789999999999999999742 234678899999999999999999999999999999999999985 35999999
Q ss_pred EeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHH
Q 028240 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (211)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (211)
+||+++..... ...+.+++.+++++++||++||+||||+|++|+|++..+++++|++|++|+++|+||+||+|||+++
T Consensus 78 aTK~~~~~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 99986421111 1134589999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhcc------CCceEEeccCCccccCc-hhhHHHHHHHcCCeeee
Q 028240 169 TIRRAHAV------HPITAVQLEWSLWARDI-ENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 169 ~l~~~~~~------~~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~a 210 (211)
+++++... .+++++|.+||++++.. +.+++++|+++||+|+|
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a 204 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMT 204 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEE
Confidence 98876432 47889999999999874 56799999999999987
No 6
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.6e-45 Score=304.88 Aligned_cols=194 Identities=42% Similarity=0.635 Sum_probs=176.7
Q ss_pred eeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC-CCcEEEE
Q 028240 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQVA 89 (211)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~-r~~~~i~ 89 (211)
+++||++|+.||+||||+|+++..+ .+.+++.++++.|++.|||+||||+.||.|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 4789999999999999999987654 47899999999999999999999999999999999999999876 9999999
Q ss_pred eccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC-HHHHHHHHHHHHHcCcccEEEeCCCCHH
Q 028240 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPD 168 (211)
Q Consensus 90 tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (211)
||++...... .+.+++.+++++++||++||++|||+|++|+|+.... ..++|++|++++++|+||+||||||+++
T Consensus 78 tK~~~~~~~~----~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGDG----RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCCC----CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 9998643211 3468999999999999999999999999999987765 8899999999999999999999999999
Q ss_pred HHHHHhcc--CCceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 169 TIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 169 ~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
.+++++.. .+|+++|++||++++....+++++|+++||+|++.
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 198 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAY 198 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEe
Confidence 99999888 79999999999999986557999999999999974
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5e-45 Score=309.98 Aligned_cols=198 Identities=26% Similarity=0.378 Sum_probs=169.7
Q ss_pred CCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcC-------CCcHHHHHHHHHhcC
Q 028240 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYG-------PYTNEILLGKALKEL 81 (211)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~~E~~lG~~l~~~ 81 (211)
|++++||++|+.||+||||||++|. ..+++++.++++.|++.||||||||+.|| .|.+|..+|++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6789999999999999999999864 35688999999999999999999999998 488999999999853
Q ss_pred -CCCcEEEEeccccccCC-Ccc--cccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCC-----------------CCC
Q 028240 82 -PRENIQVATKFGFVELG-FTS--VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----------------SVP 140 (211)
Q Consensus 82 -~r~~~~i~tK~~~~~~~-~~~--~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-----------------~~~ 140 (211)
+|++++|+||++..... ... ...+.+++++++++++||++||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 58999999998642211 000 012468999999999999999999999999999964 245
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc------CCceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
++++|++|++|+++|+||+||+|||+.++++++... ..+.++|++||++++..+.+++++|+++||+|+|
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via 232 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEE
Confidence 789999999999999999999999999988776532 3578899999999987766899999999999987
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-44 Score=299.88 Aligned_cols=196 Identities=26% Similarity=0.437 Sum_probs=169.4
Q ss_pred eecCCCCcccccceeccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEE
Q 028240 12 VKLGTQGLEVSKLGYGCMSLSG--CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVA 89 (211)
Q Consensus 12 ~~lg~~g~~vs~lg~G~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~ 89 (211)
++|+ |++||+||||||++|+ .|+...+++++.++++.|++.|||+||||+.||+|.+|+.+|++++. .|++++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~ 86 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIV 86 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEE
Confidence 4564 9999999999999985 36655678899999999999999999999999999999999999975 48999999
Q ss_pred eccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 90 tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
||++........+....+++.+++++++||++||+||||+|++|+++. ..+++++|++|++|+++||||+|||||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn 166 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSN 166 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecC
Confidence 999754321111234568999999999999999999999999888521 234789999999999999999999999
Q ss_pred CCHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 165 ASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
|++++++++....+++++|++||++++.. .+++++|+++||+++|.
T Consensus 167 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~ 212 (290)
T PRK10376 167 VTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPF 212 (290)
T ss_pred CCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEe
Confidence 99999999998899999999999999863 57999999999999873
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.4e-44 Score=303.58 Aligned_cols=194 Identities=32% Similarity=0.522 Sum_probs=166.7
Q ss_pred eeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc--CCCCcEEE
Q 028240 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (211)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~--~~r~~~~i 88 (211)
||+||++|++||.||||||++|+.|+ ..+++++.+++++|++.|||+||||+.||.|.+|..+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFG-PVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCC-CCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 57899999999999999999987665 3678999999999999999999999999999999999999997 46999999
Q ss_pred EeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC---CCHHHHHHHHHHHHHcCcccEEEeCCC
Q 028240 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 165 (211)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (211)
+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. ..++++|++|++|+++|+||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999974211 124589999999999999999999999999999743 345789999999999999999999999
Q ss_pred CHHHHHHHhccC-----CceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 166 SPDTIRRAHAVH-----PITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 166 ~~~~l~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
++++++.+.... .+..+|++||+.++.. .+++++|+++||+|+|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~ 204 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISA 204 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEe
Confidence 998887766432 2334578999887643 47999999999999973
No 10
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=293.43 Aligned_cols=177 Identities=30% Similarity=0.462 Sum_probs=161.2
Q ss_pred eeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc------CCCC
Q 028240 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE------LPRE 84 (211)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~------~~r~ 84 (211)
..+| ++|.++|.||||||+ .+++++.++++.|++.|+||||||..|+ +|+.+|++|++ ++|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~--------~~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQ--------SPPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEecc--------cChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 889999999999997 3578999999999999999999999999 99999999995 5899
Q ss_pred cEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC----------------CCHHHHHHHH
Q 028240 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----------------VPIEETIGEM 148 (211)
Q Consensus 85 ~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----------------~~~~~~~~~l 148 (211)
++||+||+|.... .++.++.++++||++||+||+|||++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~~---------~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTDH---------APELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCcccc---------ChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 9999999997532 68999999999999999999999999999543 2466899999
Q ss_pred HHHHHcCcccEEEeCCCCHHHHHHHhcc--CCceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 149 KKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 149 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+++++.|++|+||||||+..++++++.. .+|.++|+++|++.+ +.++++||+++||.|.|
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~A 206 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTA 206 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEE
Confidence 9999999999999999999999999887 578999999999777 45799999999999987
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=9.7e-43 Score=288.01 Aligned_cols=182 Identities=36% Similarity=0.560 Sum_probs=158.6
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc--CCCCcEEEEeccccccCCCc
Q 028240 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVELGFT 100 (211)
Q Consensus 23 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~--~~r~~~~i~tK~~~~~~~~~ 100 (211)
+||||||++++. ..+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|++ .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998753 5789999999999999999999999999988899999999998 789999999999211 1
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC-HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHH--hccC
Q 028240 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA--HAVH 177 (211)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~ 177 (211)
....+.+++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+||||||++++++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2234678999999999999999999999999999999888 899999999999999999999999999999999 5567
Q ss_pred CceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 178 PITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 178 ~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
+|+++|++||++++....+++++|+++||+|+|.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 187 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAY 187 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEE
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 8999999999997777788999999999999973
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.2e-42 Score=281.89 Aligned_cols=169 Identities=25% Similarity=0.405 Sum_probs=151.5
Q ss_pred ccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc--CCCCcEEEEeccccccC
Q 028240 20 EVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVEL 97 (211)
Q Consensus 20 ~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~--~~r~~~~i~tK~~~~~~ 97 (211)
+||+||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|++ .+|++++|+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6899999999753 36789999999999999999999999 79999999985 469999999998532
Q ss_pred CCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc
Q 028240 98 GFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 98 ~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (211)
..+++.+++++++||+|||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 2478999999999999999999999999999763 4678999999999999999999999999999998876
Q ss_pred c---CCceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 176 V---HPITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 176 ~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
. .+++++|++||++++. .+++++|+++||+|+|
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a 177 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTS 177 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEE
Confidence 4 3689999999999874 5799999999999997
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.4e-42 Score=284.87 Aligned_cols=179 Identities=21% Similarity=0.238 Sum_probs=156.5
Q ss_pred CcccccceeccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEe
Q 028240 18 GLEVSKLGYGCMSLSGC-------YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVAT 90 (211)
Q Consensus 18 g~~vs~lg~G~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~t 90 (211)
+++||+||||||++|+. |+ .++++++.++++.|++.|||+||||+.||. +|+.+|++|+...+++++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999864 33 478999999999999999999999999975 999999999853345788888
Q ss_pred ccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCH-HHHHHHHHHHHHcCcccEEEeCCCCHH
Q 028240 91 KFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPD 168 (211)
Q Consensus 91 K~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (211)
|.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 1268999999999999999999999999999763 233 578999999999999999999999999
Q ss_pred HHHHHhccCCceEEeccCCccccCch-hhHHHHHHHcCCeeee
Q 028240 169 TIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRFVRLAVKS 210 (211)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a 210 (211)
++.++....+|+++|++||++++..+ .+++++|+++||++++
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a 190 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHL 190 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEE
Confidence 99888777899999999999998753 4699999999999986
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2e-40 Score=273.44 Aligned_cols=180 Identities=29% Similarity=0.375 Sum_probs=158.6
Q ss_pred CCCCcCCCCCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc
Q 028240 1 MAEDKKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE 80 (211)
Q Consensus 1 m~~~~~~~~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~ 80 (211)
|||.. +.+| ++|+.||.||||||++ +++++.+++++|++.|+|+||||+.|| +|+.+|++|++
T Consensus 1 ~~~~~-----~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~ 63 (275)
T PRK11565 1 MANPT-----VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKE 63 (275)
T ss_pred CCCCc-----eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHH
Confidence 66655 3557 7899999999999874 458899999999999999999999998 89999999986
Q ss_pred --CCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC-CHHHHHHHHHHHHHcCcc
Q 028240 81 --LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKI 157 (211)
Q Consensus 81 --~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~i 157 (211)
.+|++++|+||++.. +++.+++++++||++||++|||+|++|+|++.. +..++|++|++|+++|+|
T Consensus 64 ~~~~R~~~~i~tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~i 132 (275)
T PRK11565 64 ASVAREELFITTKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLI 132 (275)
T ss_pred cCCCHHHEEEEEEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCe
Confidence 358999999998531 468999999999999999999999999998653 477999999999999999
Q ss_pred cEEEeCCCCHHHHHHHhccC--CceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 158 KYIGLSEASPDTIRRAHAVH--PITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 158 r~iGvs~~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
|+||||||+++++++++... ++.++|++||++.+. .+++++|+++||+++|
T Consensus 133 r~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a 185 (275)
T PRK11565 133 KSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTES 185 (275)
T ss_pred eEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEE
Confidence 99999999999999887543 578999999998874 5799999999999886
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.4e-41 Score=264.16 Aligned_cols=199 Identities=30% Similarity=0.441 Sum_probs=178.2
Q ss_pred CCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC--CCcE
Q 028240 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENI 86 (211)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~--r~~~ 86 (211)
|++.+++..|+++|++.+|+|++.. | ...+.+....++.|++.|||+||-|+.||+|..|+.+|.+|+-.| |+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~--~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-W--NMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6789999999999999999999975 3 356789999999999999999999999999999999999998644 8999
Q ss_pred EEEeccccccCCC---cccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC
Q 028240 87 QVATKFGFVELGF---TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (211)
Q Consensus 87 ~i~tK~~~~~~~~---~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 163 (211)
.|.||++...... .....++|.++|..++|+||.+|++||+|++++|+||+..+.+++.+|+..|.++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999764422 1124578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhccC--CceEEeccCCccccC-chhhHHHHHHHcCCeeee
Q 028240 164 EASPDTIRRAHAVH--PITAVQLEWSLWARD-IENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 164 ~~~~~~l~~~~~~~--~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 210 (211)
||++.+++.+.... ++..+|++.|+++.. ..++.+++|+.+.|..+|
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pma 207 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMA 207 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCccc
Confidence 99999998876653 578899999998887 456799999999999876
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2e-39 Score=267.27 Aligned_cols=194 Identities=28% Similarity=0.370 Sum_probs=174.7
Q ss_pred CCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEE
Q 028240 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQV 88 (211)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i 88 (211)
|.||++|++|.++|.+|||+|++...|++..+.+.+.++++.|++.|||+||||+.|..|++|..+|++|+...|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999888877889999999999999999999999999988889999999999988999999
Q ss_pred EeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHH-----HHHHHHHHHHHcCcccEEEeC
Q 028240 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 163 (211)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvs 163 (211)
+||+..... -+++.+++-++++|++|++||+|+|++|.... ..++ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 999974321 27899999999999999999999999999976 3332 479999999999999999999
Q ss_pred CCC-HHHHHHHhccCCceEEeccCCccccCch--hhHHHHHHHcCCeeeeC
Q 028240 164 EAS-PDTIRRAHAVHPITAVQLEWSLWARDIE--NEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 164 ~~~-~~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~~~gi~v~a~ 211 (211)
.|+ .+.+.+++...+++++|++||+++.... .+.+++|+++|++|+-|
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IM 202 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIM 202 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEE
Confidence 985 5688899999999999999999998743 37899999999999743
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.4e-38 Score=249.16 Aligned_cols=200 Identities=30% Similarity=0.466 Sum_probs=171.1
Q ss_pred CCCeeecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEE
Q 028240 8 QVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQ 87 (211)
Q Consensus 8 ~~~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~ 87 (211)
.|.+|.+|++|+.||+++||.+.++..|+. .++++....+..|+.+|||+|||++.||.+++|+.+|.+++++||+.++
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 478999999999999999999999998876 6777776666679999999999999999999999999999999999999
Q ss_pred EEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC----CHHHHHHHHHHHHHcCcccEEEeC
Q 028240 88 VATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV----PIEETIGEMKKLVEEGKIKYIGLS 163 (211)
Q Consensus 88 i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~ir~iGvs 163 (211)
|+||++.-. -+....++++++.+++++++||+||+++|+|++++|..+... .+.|++.+|++++++||+|+||++
T Consensus 100 IaTKvgRy~-ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYE-LDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecc-cCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 999998532 233334789999999999999999999999999999986542 256999999999999999999999
Q ss_pred CCCHHHHHHHhccC--CceEEe--ccCCccccCchhhHHHHHHHcCCeeee
Q 028240 164 EASPDTIRRAHAVH--PITAVQ--LEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 164 ~~~~~~l~~~~~~~--~~~~~q--~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
.+..+.+.++.+.. .++++- ..|++.+..- -+.+++.+.+|++|++
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~ 228 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVIN 228 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEe
Confidence 99999999888763 467765 4555555432 3567888899999986
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.17 E-value=4.9e-06 Score=66.08 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc--CCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
+...|..||+++.+|+|..||+|.|++.++++++.+ ..|.++|+...-.+.-+ .++.+||.+|+|.+.
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLl 224 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLL 224 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeee
Confidence 347899999999999999999999999999999987 47888999888777643 589999999999864
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.86 E-value=1.6 Score=36.66 Aligned_cols=146 Identities=16% Similarity=0.095 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC-cHHHHHHHHHhc-CCCCcEEEEeccccccCCCcccccCCChHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~~E~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
++++..+.++.+.+.|++.|+.-- |.. ..+...=+++++ .+ ++-|.-+.... ++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g--~~~l~vD~n~~----------~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP--DARLRVDANQG----------WTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC--CCeEEEeCCCC----------cCHHHH-HHHHH
Confidence 567777888889999999998743 211 122222234443 33 55566555321 233332 22333
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-Cchh
Q 028240 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIEN 195 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~ 195 (211)
.|+.+++ .++..|-+. +-++.+.+|++.-.+. ..|=+-++.+.+.++++....+++|+..+..=. ..-.
T Consensus 199 ~l~~~~l-----~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAELGV-----ELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhcCC-----CEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 4444444 444445332 2466777888876666 445555889999999998889999998665311 1234
Q ss_pred hHHHHHHHcCCeee
Q 028240 196 EIVPLCRFVRLAVK 209 (211)
Q Consensus 196 ~~~~~~~~~gi~v~ 209 (211)
.+..+|+++|+.+.
T Consensus 270 ~~~~~a~~~gi~~~ 283 (316)
T cd03319 270 RIADLARAAGLKVM 283 (316)
T ss_pred HHHHHHHHcCCCEE
Confidence 68999999999875
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.20 E-value=1.4 Score=34.49 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=87.8
Q ss_pred HHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCC
Q 028240 46 SIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE 125 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~ 125 (211)
+++...++-|-+.+|-.-..| .+-+.|+.. + ++. +.....+++.+.+++.+-+.-...|
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~-k-~v~-------------g~GvEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE-K-QVD-------------GYGVEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHHh-c-CCe-------------EEEEecCHHHHHHHHHcCCCEEECC
Confidence 567778888999999765444 233555431 1 110 0112346677777766665544433
Q ss_pred ceeEEEeecCCCCCC----------HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc-c-CCceEEeccCCccccCc
Q 028240 126 YIDLYYQHRVDTSVP----------IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA-V-HPITAVQLEWSLWARDI 193 (211)
Q Consensus 126 ~iDl~~lh~~~~~~~----------~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~-~~~~~~q~~~~~~~~~~ 193 (211)
+|--+-+.||...+ +....+.|+++..-|+---|++.||..+..+.-+- . --|..-+++|+.++...
T Consensus 64 -ld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 64 -LDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred -HHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 22233333433332 22345567788888988889999998887665443 2 33666788888877641
Q ss_pred -----hhhHHHHHHHcCCeee
Q 028240 194 -----ENEIVPLCRFVRLAVK 209 (211)
Q Consensus 194 -----~~~~~~~~~~~gi~v~ 209 (211)
-.+..++|++.|+.|.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred cccccHHHHHHHHHHCCCEEE
Confidence 2578899999999885
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.04 E-value=3.1 Score=35.43 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC-----cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-----TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-----~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
+.++..+.++.+.+.|++.|-.--..+.. ......=+++++.-.+++.|...... .++.+...+-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~~ 208 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAIRL 208 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHHHH
Confidence 46777788888889999988753222210 01222223444322345555554421 1244433322
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-C
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-D 192 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~ 192 (211)
++ .|+.+ ++.+++.|-+. +.++.+..|++.-.+. ..|=|-++++.+.++++....+++|+.....-. .
T Consensus 209 ~~-~l~~~-----~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 209 AR-ALEEY-----DLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred HH-HhCcc-----CCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 22 22333 44456666432 2566777787775554 444455789999999988888999998765321 1
Q ss_pred chhhHHHHHHHcCCeee
Q 028240 193 IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 193 ~~~~~~~~~~~~gi~v~ 209 (211)
....+...|+++|+.++
T Consensus 279 ~~~~i~~~a~~~g~~~~ 295 (357)
T cd03316 279 EAKKIAALAEAHGVRVA 295 (357)
T ss_pred HHHHHHHHHHHcCCeEe
Confidence 23479999999999875
No 22
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.80 E-value=2.1 Score=34.68 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEeCCCCHHHHHHHhccCCceEEe
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 183 (211)
.++.+...+-++. |..+|+++|++-..-.+......++.++.++++++.+ .++...++....+.++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 3455555554544 7788999998876554422222346788889999888 6777677776667777776653 45566
Q ss_pred ccCCccc--------cC------chhhHHHHHHHcCCeee
Q 028240 184 LEWSLWA--------RD------IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 184 ~~~~~~~--------~~------~~~~~~~~~~~~gi~v~ 209 (211)
+.+...+ +. .-.+.+++++++|+.|.
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 132 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVE 132 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 6555431 11 12357788899998765
No 23
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.54 E-value=1.6 Score=34.52 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=46.3
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-CCCHHHHHHHhccCCceEEeccCC
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
...+|.|++=+.+........+.+.+-+-...+ .+.++.+||. |-+++.+.++.+..+++++|++-.
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 456999999987544322234444433333322 2568899996 788999999999999999999764
No 24
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.15 E-value=3.5 Score=32.66 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=44.3
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-CCCHHHHHHHhccCCceEEeccCC
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
..+|.|++=+.+........+.+.+-+....+ .+.+..+||. |-+++.+.++++...++++|++-+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 56899999887433222223333333322222 2568899998 568899999999999999999764
No 25
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.79 E-value=11 Score=31.72 Aligned_cols=131 Identities=12% Similarity=-0.010 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CC-----CcCCC----cHHHHHHHHHhcC---CCCcEEEEeccccccCCCccccc
Q 028240 40 SEEDGISIIKHAFSKGITFFDT---AD-----KYGPY----TNEILLGKALKEL---PRENIQVATKFGFVELGFTSVIV 104 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~g----~~E~~lG~~l~~~---~r~~~~i~tK~~~~~~~~~~~~~ 104 (211)
++++..++...+.+.|+..+|- .+ .||.| ..-+.+.+.++.+ -..++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6777777888888999999982 22 35544 2233444544432 1225778888754211
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHH---HHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCce
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPIT 180 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~---~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~ 180 (211)
+.+. ...+-+.++..|+ |.+.+|.-........ -|+.+.++++.-.|.=||... +++++.+++++....+
T Consensus 146 --~~~~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 2355566777775 5667786543222211 378888888887788888887 5888888888654444
Q ss_pred EEe
Q 028240 181 AVQ 183 (211)
Q Consensus 181 ~~q 183 (211)
.++
T Consensus 220 gVm 222 (312)
T PRK10550 220 AVM 222 (312)
T ss_pred EEE
Confidence 443
No 26
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.63 E-value=3.8 Score=33.57 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEE-eecCCCC-CCHH----HHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCc
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYY-QHRVDTS-VPIE----ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~-lh~~~~~-~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 179 (211)
++.+.+.+.+++.+ .-|.+.||+-- --+|... .+.+ .+...++.+++.-.+. |.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 35555555555554 45889999953 2334332 2223 3333456666553333 88889999999999987632
Q ss_pred eEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 180 TAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 180 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
+-+..+..... .++++.++++|..++++
T Consensus 99 --iINdisg~~~~--~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 99 --IINDVSGGSDD--PAMLEVAAEYGAPLVLM 126 (257)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEE
Confidence 33344444321 57899999999999864
No 27
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=88.12 E-value=4.6 Score=32.02 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEeCC-CCHHHHHHHhccCCceEEeccCCccccCchhhH
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDIENEI 197 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~ 197 (211)
..+|.+|+=+++.-......+.+. .+++.+.-. ++.+||.. .+.+.+.++++..+++.+|++-.. ..+.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~ 89 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEY 89 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHH
Confidence 568899988877652222333333 333333332 78999984 678899999999999999997663 2345
Q ss_pred HHHHHHcC-Cee
Q 028240 198 VPLCRFVR-LAV 208 (211)
Q Consensus 198 ~~~~~~~g-i~v 208 (211)
++..++.. +.|
T Consensus 90 ~~~l~~~~~~~v 101 (208)
T COG0135 90 IDQLKEELGVPV 101 (208)
T ss_pred HHHHHhhcCCce
Confidence 55555543 444
No 28
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.05 E-value=6.1 Score=34.41 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
+......++++|++.|++++|||.... ....+....+ +..+.+..-+|.. +..+--.....+++-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a~---~Agit~v~~~G~d--------PGi~nv~a~~a~~~~~ 142 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEAK---KAGITAVLGCGFD--------PGITNVLAAYAAKELF 142 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHHH---HcCeEEEcccCcC--------cchHHHHHHHHHHHhh
Confidence 345566899999999999999998776 3222322222 3455666665542 1122222222232222
Q ss_pred hhcCCCceeEEEeecCCCC
Q 028240 120 RRLDVEYIDLYYQHRVDTS 138 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~ 138 (211)
. .++++|+|..+.|+..
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 2 5889999999998765
No 29
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.21 E-value=20 Score=29.66 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCcCCCcHHHHHHHHHhcCCCC-cEEEEeccccccCCCcccccCCCh
Q 028240 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTP 108 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g~~E~~lG~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~s~ 108 (211)
+.++..++.+.+.+.|+..+|.- ..|+ .+.+.+-+.++.+.+. ++-|..|+.+. .
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------------~ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPN------------V 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCC------------c
Confidence 56788888888999999998862 2232 2556666666653322 67788887542 1
Q ss_pred HHHHHHHHHHHhhcCCCceeEEE------eecCC--C-----------CCCHHHHHHHHHHHHHcCcccEEEeCC-CCHH
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYY------QHRVD--T-----------SVPIEETIGEMKKLVEEGKIKYIGLSE-ASPD 168 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~------lh~~~--~-----------~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~ 168 (211)
+.+. .+-+.+...|.|.+++.- +|... + .....-.++.+.++++.=.+.-||+.. ++++
T Consensus 166 ~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 1222 333456778888776641 11100 0 000123567777887765688899888 4789
Q ss_pred HHHHHhccCCceEEeccCCccc-cC----chhhHHHHHHHcCC
Q 028240 169 TIRRAHAVHPITAVQLEWSLWA-RD----IENEIVPLCRFVRL 206 (211)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~~~~~-~~----~~~~~~~~~~~~gi 206 (211)
.+.+++..+ .+.+|+-=.++. +. ..+++.++.+++|.
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 999998755 577776332222 21 23456677777774
No 30
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=84.63 E-value=9.7 Score=31.07 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEe-ecCCCC-CC----HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCce
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT 180 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~l-h~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 180 (211)
+.+.+.+.+++.+ .-|.+.||+--- -+|... .+ .+.....++.+++.-.+ -|.+-+++++.++++++.+..
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~- 98 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD- 98 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC-
Confidence 5666666666654 568899999632 233321 11 23455666666655233 389999999999999988733
Q ss_pred EEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 181 AVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 181 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
+-+..+.... ..++++.++++|..++.+
T Consensus 99 -iINdis~~~~--~~~~~~l~~~~~~~vV~m 126 (258)
T cd00423 99 -IINDVSGGRG--DPEMAPLAAEYGAPVVLM 126 (258)
T ss_pred -EEEeCCCCCC--ChHHHHHHHHcCCCEEEE
Confidence 3333344322 147899999999988764
No 31
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=84.45 E-value=0.53 Score=40.43 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=38.4
Q ss_pred cCcccEEEeCCCCHHHHHHHhccCC-ceEEeccCCccccCchhhHHHHHHHcCCe
Q 028240 154 EGKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWARDIENEIVPLCRFVRLA 207 (211)
Q Consensus 154 ~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 207 (211)
-|+|||+||--++++.++++..... -+..+.+..++-...+..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999998866532 23333444443333345799999999986
No 32
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=83.96 E-value=22 Score=29.04 Aligned_cols=101 Identities=11% Similarity=-0.031 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH-HHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEec
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (211)
.+++.+.+.+++.++ -|.++||+-. .|. ..+. ++.-+.+..+++.-. .-|.+-+++++.++++++.++=..+-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 366777777777765 4999999865 233 2232 233333333333212 247888999999999988621122333
Q ss_pred cCCcccc-CchhhHHHHHHHcCCeeeeC
Q 028240 185 EWSLWAR-DIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 185 ~~~~~~~-~~~~~~~~~~~~~gi~v~a~ 211 (211)
..+.... .....+++.++++|..++.+
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m 125 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVL 125 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEe
Confidence 4444321 11246789999999888764
No 33
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=82.98 E-value=29 Score=29.75 Aligned_cols=142 Identities=10% Similarity=0.059 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
+.++..+.++.+.+.|++.|=.- -.+.+ +++++.-.+++.+..-... .++.+.. .+.+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiK-------v~~~v-~avre~~G~~~~l~vDaN~----------~w~~~~A----~~~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQ-------LPKLF-EAVREKFGFEFHLLHDVHH----------RLTPNQA----ARFG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeC-------HHHHH-HHHHhccCCCceEEEECCC----------CCCHHHH----HHHH
Confidence 45666677777888999976431 02223 3334322234444332221 1244432 2223
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhH
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEI 197 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~ 197 (211)
+.|. ..++.++..|-+. +-++.+.+|++...+. +.|=|-++...+..++....++++|+.....-. ....++
T Consensus 184 ~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3332 2466677776432 3377788888886665 677777899999999988889999998775321 113479
Q ss_pred HHHHHHcCCeee
Q 028240 198 VPLCRFVRLAVK 209 (211)
Q Consensus 198 ~~~~~~~gi~v~ 209 (211)
.+.|+++|+.+.
T Consensus 258 a~~A~~~gi~~~ 269 (361)
T cd03322 258 ADLASLYGVRTG 269 (361)
T ss_pred HHHHHHcCCeee
Confidence 999999999874
No 34
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=82.76 E-value=14 Score=32.62 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=63.0
Q ss_pred cceeccccCCCC----CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCC
Q 028240 23 KLGYGCMSLSGC----YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG 98 (211)
Q Consensus 23 ~lg~G~~~~~~~----~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~ 98 (211)
+|.+|...|... .+...+.+++..+++.+-+.|+.-+-.-=.|| .+
T Consensus 150 RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg---------------------------lP--- 199 (416)
T COG0635 150 RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG---------------------------LP--- 199 (416)
T ss_pred EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC---------------------------CC---
Confidence 666666555421 12223445566666666666666554444554 22
Q ss_pred CcccccCCChHHHHHHHHHHHhhcCCCceeEEEee-cCCCC-----------CCHH---HHHHHH-HHHHHcCcccEEEe
Q 028240 99 FTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTS-----------VPIE---ETIGEM-KKLVEEGKIKYIGL 162 (211)
Q Consensus 99 ~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh-~~~~~-----------~~~~---~~~~~l-~~l~~~G~ir~iGv 162 (211)
.-+.+.+.+.+++.++ |+.++|.+|.+- -|... .+.+ +.++.. +.|.+.|. +.+|+
T Consensus 200 ------~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yei 271 (416)
T COG0635 200 ------GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEI 271 (416)
T ss_pred ------CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEee
Confidence 1267788888887764 679999999874 33110 1111 445554 44556676 99999
Q ss_pred CCCCH
Q 028240 163 SEASP 167 (211)
Q Consensus 163 s~~~~ 167 (211)
|||.-
T Consensus 272 snfa~ 276 (416)
T COG0635 272 SNFAK 276 (416)
T ss_pred chhcC
Confidence 99975
No 35
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=81.20 E-value=16 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-------------CCHH---HHH-HHHHHHHHcCcccEEEeCCCC
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-------------~~~~---~~~-~~l~~l~~~G~ir~iGvs~~~ 166 (211)
+.+.+++.++..+ +|+.++|.+|.+.-.... .+.+ +.+ .+.+.|.+.|.. ++++|||.
T Consensus 180 t~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 180 TLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred CHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheE
Confidence 5677777777655 377788888766521110 0111 222 345666777764 57888875
No 36
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.81 E-value=10 Score=31.57 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEecc
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 185 (211)
++.+... .+-+.|.++|+++|++-.+..|.......+.++.+..+.+...++...+. -+...++.+.+... +.+.+.
T Consensus 23 ~s~e~k~-~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v~i~ 99 (287)
T PRK05692 23 IPTADKI-ALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEVAVF 99 (287)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEEEEE
Confidence 3444443 45566899999999997555554222233446667776655456666655 47788888877532 223222
Q ss_pred CCcc--------ccCc------hhhHHHHHHHcCCeee
Q 028240 186 WSLW--------ARDI------ENEIVPLCRFVRLAVK 209 (211)
Q Consensus 186 ~~~~--------~~~~------~~~~~~~~~~~gi~v~ 209 (211)
++.- .... -.+.+++++++|+.|.
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2221 1111 2358899999998875
No 37
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=79.98 E-value=20 Score=30.91 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeec-CCC-----------C-CCHH---HH-HHHHHHHHHcCcccEEEeCCCCH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHR-VDT-----------S-VPIE---ET-IGEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~-~~~-----------~-~~~~---~~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
+.+.+.+.++..++ |+.+++.+|.+.- |.. . .+.+ +. ..+.+.|.+.|. .++++|||..
T Consensus 168 t~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 168 SLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 78888888888764 8899999988753 210 0 0111 22 234566777787 4578998753
No 38
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=79.83 E-value=28 Score=27.90 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCc---HHHHHHHHHhc--------------CCCCcEEEEecccc-----
Q 028240 37 SPLSEEDGISIIKHAFSKGITFFDTADKYGPYT---NEILLGKALKE--------------LPRENIQVATKFGF----- 94 (211)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~---~E~~lG~~l~~--------------~~r~~~~i~tK~~~----- 94 (211)
++.+.++..++++.|.++|++-+=..++|-.|+ .++.+.+.+.+ .|..+++|+.-+--
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~g 94 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDKG 94 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHHHHHHhcC
Confidence 446789999999999999999876666665443 44455554433 35566666544311
Q ss_pred --ccCCCcc-cccCCChHHHHHHHHHHHhhcC-CCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 95 --VELGFTS-VIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 95 --~~~~~~~-~~~~~s~~~i~~~~~~sL~~Lg-~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
...+++. ....++-.++-+-.++.+-.|. ..++-+ +.-|+.+..+..-...|.+|++.|.--.+--|.
T Consensus 95 ~I~tindskYlLIEF~~~~v~~ya~~lf~elq~kGi~PI--IAHPERn~~i~kn~~~lyeLid~ga~sQvts~S 166 (254)
T COG4464 95 IILTINDSKYLLIEFPMNHVPRYADQLFFELQSKGIIPI--IAHPERNRAIQKNPYLLYELIDKGAYSQVTSSS 166 (254)
T ss_pred ccccccccceEEEEccCCcchhhHHHHHHHHHHCCceee--eechhhHHHHHhChHHHHHHHhcccceeechHh
Confidence 0001111 1123344444445555554443 222222 123444444555667788888888866664443
No 39
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=79.77 E-value=17 Score=29.50 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHH--------------------HhcCCCCcEEEEeccccccC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA--------------------LKELPRENIQVATKFGFVEL 97 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~--------------------l~~~~r~~~~i~tK~~~~~~ 97 (211)
..+.++..++.+.|-+.||.||=|...-. +-..+-+. +++ ....++++|=..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~s---- 123 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMS---- 123 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT-----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCC----
Confidence 35779999999999999999998876443 22222111 111 233455555432
Q ss_pred CCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHH-HHHHHHHHHHHcCcccEEEeCCCCHH
Q 028240 98 GFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIE-ETIGEMKKLVEEGKIKYIGLSEASPD 168 (211)
Q Consensus 98 ~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~-~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (211)
+.+.|+++++...++-+ -++.++|+.... .+.+ --+..+..|++.=- --||+|.|+..
T Consensus 124 ---------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 124 ---------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp ----------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ---------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 56778888777744444 588999998654 3333 35777777776622 57899998764
No 40
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=79.42 E-value=33 Score=28.06 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEE-eecCCCC-CCHH-H---HHHHHHHHHHc-CcccEEEeCCCCHHHHHHHhccCC
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYY-QHRVDTS-VPIE-E---TIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHP 178 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~-lh~~~~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 178 (211)
.+++.+.+.+++.+ .-|.++||+-- --+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35666666666554 45889999942 1234322 1223 2 45555556555 43 48888999999999998754
Q ss_pred ceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 179 ITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 179 ~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
.-++ ..+... .+++++.++++|..++.|
T Consensus 97 ~iIN--sis~~~---~~~~~~l~~~~~~~vV~m 124 (257)
T TIGR01496 97 DIIN--DVSGGQ---DPAMLEVAAEYGVPLVLM 124 (257)
T ss_pred CEEE--ECCCCC---CchhHHHHHHcCCcEEEE
Confidence 3333 233332 346899999999998864
No 41
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=79.20 E-value=33 Score=27.89 Aligned_cols=149 Identities=14% Similarity=0.152 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
++++..+.++.+.+.|++.|-.--.-.. ..+...=+++++.-.+++.|.-.... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 4566777888889999998765321111 11222234444422334444433321 12443333322 333
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhH
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEI 197 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~ 197 (211)
+.+++ .++..|-+. +-++.+.+|++.-.+. +.|=+-++...+.++++....+++|+..+..-. .....+
T Consensus 153 ~~~~i-----~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLGL-----DYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcCC-----CEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 44444 445666432 2356677777765555 444455788999999988889999998775432 123578
Q ss_pred HHHHHHcCCeee
Q 028240 198 VPLCRFVRLAVK 209 (211)
Q Consensus 198 ~~~~~~~gi~v~ 209 (211)
...|+++|+.+.
T Consensus 224 ~~~A~~~gi~~~ 235 (265)
T cd03315 224 LAVAEALGLPVM 235 (265)
T ss_pred HHHHHHcCCcEE
Confidence 999999999875
No 42
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=79.15 E-value=36 Score=28.30 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---CCC-----cCCCcHHHHHHHHHhcCCC-CcEEEEeccccccCCCcccccCCChH
Q 028240 40 SEEDGISIIKHAFSKG-ITFFDT---ADK-----YGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPE 109 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~-----Yg~g~~E~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~s~~ 109 (211)
+.++..++.+.+.+.| +..+|- +++ |..+...+.+-+.++.+.+ -++-|..|+.+. .+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------------~~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------------VT 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------------ch
Confidence 5688888888888998 999876 221 1122345666666665322 257788888642 12
Q ss_pred HHHHHHHHHHhhcCCCceeEEE-eecC--CCCC--------------C--HHHHHHHHHHHHHcCcccEEEeCCC-CHHH
Q 028240 110 YVRSCCEASLRRLDVEYIDLYY-QHRV--DTSV--------------P--IEETIGEMKKLVEEGKIKYIGLSEA-SPDT 169 (211)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~-lh~~--~~~~--------------~--~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~ 169 (211)
.+. .+-+.|+..|+|.+++.- .+.. +... + ..-.++.+.++++.=.+--||+... +++.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 233456778887776531 1111 0000 0 1124677777777656888899884 8899
Q ss_pred HHHHhccCCceEEeccCCcc-ccC----chhhHHHHHHHcCC
Q 028240 170 IRRAHAVHPITAVQLEWSLW-ARD----IENEIVPLCRFVRL 206 (211)
Q Consensus 170 l~~~~~~~~~~~~q~~~~~~-~~~----~~~~~~~~~~~~gi 206 (211)
+++++... .+.+|+-=-++ ++. ..+++-.+..++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 99988754 57777532222 121 23456666777664
No 43
>PRK05660 HemN family oxidoreductase; Provisional
Probab=78.59 E-value=23 Score=30.63 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEee
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQH 133 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh 133 (211)
+.+.+.+.++..++ ++.++|.+|.+-
T Consensus 172 t~~~~~~~l~~~~~-l~p~~is~y~l~ 197 (378)
T PRK05660 172 SLEEALDDLRQAIA-LNPPHLSWYQLT 197 (378)
T ss_pred CHHHHHHHHHHHHh-cCCCeEEeeccE
Confidence 56666666666544 677777777553
No 44
>PRK08392 hypothetical protein; Provisional
Probab=78.37 E-value=31 Score=27.17 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc---CC-CCc--EEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---LP-REN--IQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~---~~-r~~--~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
...++++.|.+.|++.+=.+++.... ...-+-..++. .+ +.+ +.+..-+... +.. .+..+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~------------~~~-~~~~~ 80 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEIVVLAGIEANIT------------PNG-VDITD 80 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCceEEEeEEeeec------------CCc-chhHH
Confidence 36688999999999999888775311 11112222211 11 122 2333333211 111 12223
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC----C----CHHHHHHHhcc----C-CceEEe
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----A----SPDTIRRAHAV----H-PITAVQ 183 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~----~~~~l~~~~~~----~-~~~~~q 183 (211)
+.++ ..||+ +.-+|.+......+..++.+.++.+.+.+.-+|=-. + ..+.++++++. . .+.+|-
T Consensus 81 ~~~~--~~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt 157 (215)
T PRK08392 81 DFAK--KLDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS 157 (215)
T ss_pred HHHh--hCCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC
Confidence 3344 24554 556684433333567788888888888777665422 1 11233333322 2 233332
Q ss_pred ccCCccccCchhhHHHHHHHcCCeee
Q 028240 184 LEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
..+-+...+++.|++.|+.|+
T Consensus 158 -----~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 -----RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred -----CCCCCCHHHHHHHHHcCCEEE
Confidence 112234578999999998764
No 45
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=78.20 E-value=22 Score=31.56 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCC----------C---C-CHH---HH-HHHHHHHHHcCcccEEEeCCCCH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT----------S---V-PIE---ET-IGEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~----------~---~-~~~---~~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
+.+.+++.++..++ ++.+++++|.+.-... . . +.+ +. -.+.+.|.+.|. +.+++|||..
T Consensus 228 T~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far 304 (449)
T PRK09058 228 TPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWAR 304 (449)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeec
Confidence 67888888887764 8999999998864211 0 0 112 22 234566777887 5689999864
No 46
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=77.75 E-value=26 Score=28.53 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCC-----CCCCHHHHHHHHHHHHHc-CcccEEEeC---CCCHHHHHHHhcc
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVD-----TSVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAHAV 176 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~-----~~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~ 176 (211)
++.+...+ +-+.|.++|+++|++-+..... ........++.++.+++. +..+...++ ..+...++.+.+.
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 45555544 4455899999999997542211 001112345666666443 446666664 3345667676654
Q ss_pred CCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 177 HPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 177 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.++.+.+.++.-+-..-.+.+++++++|..|.
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~ 129 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVV 129 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEE
Confidence 44555554443332223568888999998764
No 47
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=77.52 E-value=19 Score=33.41 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=47.2
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-CCCHHHHHHHhccCCceEEeccCCc
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWSL 188 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~ 188 (211)
..+|.|++=+.+........+.+.....+.+......++.+||- |-+++.+.++.+...++++|++-..
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 55899999987655433334455523333333322357789996 7889999999998999999997653
No 48
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=77.25 E-value=45 Score=28.46 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeec-CCCC--------CCHHHH-HHHHHHHHHcCcccEEEeCCCCH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS--------VPIEET-IGEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~-~~~~--------~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
+.+.+++.++..+ +++.+++.+|.+.- |... .+.++. ..+.+.|.+.|. ..+++|||..
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 6777888776654 58888888887653 2110 112233 334566667785 5688888864
No 49
>PRK13796 GTPase YqeH; Provisional
Probab=76.61 E-value=49 Score=28.52 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHHcC---CCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 38 PLSEEDGISIIKHAFSKG---ITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
..++++..++++..-+.- +-.+|..+.-+. -...+.+... ...-++|.+|...... ....+.+.+.
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~ 121 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNW 121 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHH
Confidence 456777777887777655 445787664442 3344544443 3456889999875321 1245667767
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHH
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR 171 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 171 (211)
++...+.+|....+++.+.... ...++++++.+.++.+.+.+--+|.+|..-..+-
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLi 177 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLI 177 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHH
Confidence 7777777786555777665543 4567888999888877788889999998766543
No 50
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=76.21 E-value=49 Score=28.30 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEE-Eeec-CCCC----CCHHHHHHHHHHHHHcCc
Q 028240 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEGK 156 (211)
Q Consensus 83 r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G~ 156 (211)
..++.|..|++......+ ..+.+... .+-+.|+..|+|++++- -.|. +... .+........+++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 457888888875432211 12444332 34455778898888872 1231 2111 111123445567777656
Q ss_pred ccEEEeCC-CCHHHHHHHhccCCceEEec
Q 028240 157 IKYIGLSE-ASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 157 ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 184 (211)
+.=+++-. ++++.++++++....+.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 66666655 58889999998776666654
No 51
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.20 E-value=18 Score=28.24 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=28.3
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHH
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 170 (211)
...++ +|.++||..++ .+..+.+.+......++.+|+++.+..++
T Consensus 69 a~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 69 AEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 34455 67789998652 12344444433456899999998865544
No 52
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=75.11 E-value=25 Score=27.96 Aligned_cols=120 Identities=14% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-CCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
.+.++..++++...+.||..+++. +..+. ...+.+.+..+..+...+ .+.... ..+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~~------------~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARL--QALCRA------------NEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEE--EEEEES------------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccccc--ceeeee------------hHHHHHHHHHh
Confidence 577899999999999999999999 33332 122234444433233222 222211 35556666654
Q ss_pred HHhhcCCCceeEEEeecCC-----CCCC----HHHHHHHHHHHHHcCcccEEEeCC---CCHHHHHHHh
Q 028240 118 SLRRLDVEYIDLYYQHRVD-----TSVP----IEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAH 174 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~ 174 (211)
. ...|.+.+.++.--++. ...+ ++.+.+.++..++.|.-..+++-. ++++.+.++.
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 4 46788877766432220 0111 335566667777888877887754 4555555543
No 53
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=74.39 E-value=55 Score=28.01 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=54.8
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHcC
Q 028240 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFVR 205 (211)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~g 205 (211)
++.++..|-+. +.++.+.+|+++..+. ++|=|-++...+.++++...++++|+.....-. ..-..+...|+++|
T Consensus 215 ~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 215 GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 44556666432 3467778888775555 566666888999999988888899887665321 11346899999999
Q ss_pred Ceee
Q 028240 206 LAVK 209 (211)
Q Consensus 206 i~v~ 209 (211)
+.+.
T Consensus 291 i~~~ 294 (365)
T cd03318 291 IALY 294 (365)
T ss_pred Ccee
Confidence 9875
No 54
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.96 E-value=48 Score=27.21 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc--CCceEEec
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQL 184 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~ 184 (211)
+.+.+.+..++.. .-|.+.||+-.- +......+.....++.+++.-.+ -|.+-+++++.++++++. ++.-+ +
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iI--N 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLI--N 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEE--E
Confidence 4555555555543 568999999642 22222233455555555544222 478889999999999987 43322 3
Q ss_pred cCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 185 EWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
..+..... .+.+++.++++|..++++
T Consensus 97 sIs~~~~~-~~~~~~l~~~~g~~vv~m 122 (261)
T PRK07535 97 SVSAEGEK-LEVVLPLVKKYNAPVVAL 122 (261)
T ss_pred eCCCCCcc-CHHHHHHHHHhCCCEEEE
Confidence 33332211 246889999999988753
No 55
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=73.93 E-value=21 Score=31.43 Aligned_cols=79 Identities=9% Similarity=-0.072 Sum_probs=56.6
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHc------CcccEEEeCCCCHHHHHHHhccCCceEEeccCCccccC-chhhHHHHHHH
Q 028240 131 YQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRF 203 (211)
Q Consensus 131 ~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~ 203 (211)
++..|-+..+.++.++.+.+|++. ..--..+=|-++.+.+.+++.....+++|+..+-.--- ...++.++|+.
T Consensus 267 ~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~ 346 (408)
T TIGR01502 267 RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKA 346 (408)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence 777775544434567778888765 33335566668899999999888889999988743211 23579999999
Q ss_pred cCCeee
Q 028240 204 VRLAVK 209 (211)
Q Consensus 204 ~gi~v~ 209 (211)
+||.+.
T Consensus 347 ~Gi~~~ 352 (408)
T TIGR01502 347 NGMGAY 352 (408)
T ss_pred cCCEEE
Confidence 999875
No 56
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=73.71 E-value=14 Score=33.02 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=44.6
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-CCCHHHHHHHhccCCceEEeccCCc
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWSL 188 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~ 188 (211)
...+|.|++=+.+...-....+.+.+-+-...+. ++.+||- |-+++.+.++.+...++++|++-+-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 3557888888864332222344443333333322 8899998 6788999999988999999998753
No 57
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=73.18 E-value=57 Score=27.69 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCC--C-----cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGP--Y-----TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g-----~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 112 (211)
++++..+.++.+++.|++.|=.--..+. + ...+.+ +++++.-.+++-|..=... .++.+...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan~----------~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCYM----------SWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECCC----------CCCHHHHH
Confidence 5566677788888999998654211111 0 011222 3333311223323222211 12343322
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc
Q 028240 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR 191 (211)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 191 (211)
+.+++|. ..++.++..|-+. +-++.+.+|++...+. +.|=|.++...+.++++....+++|...+-.-.
T Consensus 189 ----~~~~~l~--~~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GG 258 (341)
T cd03327 189 ----KMARALE--KYELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGG 258 (341)
T ss_pred ----HHHHHhh--hcCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCC
Confidence 2333332 2355666666432 3466777788776665 666667889999999988889999998765321
Q ss_pred -CchhhHHHHHHHcCCeee
Q 028240 192 -DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 192 -~~~~~~~~~~~~~gi~v~ 209 (211)
.....+.+.|+++|+.+.
T Consensus 259 it~~~~i~~~A~~~g~~~~ 277 (341)
T cd03327 259 ITELKKIAALAEAYGVPVV 277 (341)
T ss_pred HHHHHHHHHHHHHcCCeec
Confidence 123579999999999864
No 58
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=73.08 E-value=46 Score=29.94 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=51.8
Q ss_pred HHHHHhhcCCCceeEE-------EeecCCCCCCHHHHHHHHHHHHHcCcccE----EEeCCCCHHHHHHHhcc---CCce
Q 028240 115 CEASLRRLDVEYIDLY-------YQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPIT 180 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~-------~lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~ 180 (211)
+-+.+++.|+.++-+= .+....-....++..++++.+++.|.... +|+-+.+.+.+++.++. .+++
T Consensus 289 ll~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 3344555566554442 22222223346788999999999997443 46667777777665432 3444
Q ss_pred EEeccCCccccCchhhHHHHHHHcC
Q 028240 181 AVQLEWSLWARDIENEIVPLCRFVR 205 (211)
Q Consensus 181 ~~q~~~~~~~~~~~~~~~~~~~~~g 205 (211)
.+ .++.+..-+..++.+.+++.+
T Consensus 369 ~~--~~~~~tP~PGT~l~~~~~~~~ 391 (497)
T TIGR02026 369 QA--NWLMYTPWPFTSLFGELSDRV 391 (497)
T ss_pred ce--EEEEecCCCCcHHHHHHHhhc
Confidence 33 345555555556777777665
No 59
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=73.06 E-value=49 Score=26.83 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEEeccCCccccC
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARD 192 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 192 (211)
+-+.|...|. |.+.+|..+...... --++.+.++++.-.+.-|.... .+++.+++++.....+.+.+---+....
T Consensus 160 ~~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 3344456675 556666654321111 1255666666665667666665 5678898888876555554422222222
Q ss_pred -chhhHHHHHHHcCCee
Q 028240 193 -IENEIVPLCRFVRLAV 208 (211)
Q Consensus 193 -~~~~~~~~~~~~gi~v 208 (211)
.-.++.+.|+++||.|
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 2346899999999875
No 60
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=72.09 E-value=62 Score=27.62 Aligned_cols=150 Identities=12% Similarity=0.069 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC--------cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPY--------TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--------~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i 111 (211)
+.++..+.+..+.+.|++.|=.--....+ ..+...=+++++.-..++.|..=... .++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHH-
Confidence 44566677777889999987653221100 01222334444422223333322221 123332
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCccc
Q 028240 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (211)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 190 (211)
..+.++.|. ..++.++..|-+. +-++.+.+|+++.-+. +.|=|.++..++..++....++++|......=
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 333333342 2355666666432 2477788888775554 55666689999999988777899999865431
Q ss_pred c-CchhhHHHHHHHcCCeee
Q 028240 191 R-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 191 ~-~~~~~~~~~~~~~gi~v~ 209 (211)
- .....+.+.|+++|+.+.
T Consensus 263 Git~~~~~~~lA~~~gi~~~ 282 (352)
T cd03325 263 GITELKKIAAMAEAYDVALA 282 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEe
Confidence 1 123479999999999875
No 61
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=72.01 E-value=47 Score=26.17 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=52.2
Q ss_pred hcCCCceeEEEee-cCCC-CCCHH----HHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCCccccCch
Q 028240 121 RLDVEYIDLYYQH-RVDT-SVPIE----ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE 194 (211)
Q Consensus 121 ~Lg~~~iDl~~lh-~~~~-~~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 194 (211)
.-|.++||+---- +|.. ..+.+ .+...++.+++..-=--|.+-+++++.++++++. ....+-...+.-. .
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~ 105 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED---D 105 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---S
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---c
Confidence 4489999995322 2221 12222 3455555555411112677888999999999887 4444433333211 3
Q ss_pred hhHHHHHHHcCCeeeeC
Q 028240 195 NEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~a~ 211 (211)
+++++.++++|..+++|
T Consensus 106 ~~~~~l~a~~~~~vV~m 122 (210)
T PF00809_consen 106 PEMLPLAAEYGAPVVLM 122 (210)
T ss_dssp TTHHHHHHHHTSEEEEE
T ss_pred chhhhhhhcCCCEEEEE
Confidence 57999999999999875
No 62
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.62 E-value=15 Score=29.03 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccC-CceEEecc
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQLE 185 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 185 (211)
++...+ +-+.|-+-|+..+.+=+ -. .+.++.+++++++.-=-.||.-+ .+.++++++++.+ .|-
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi----- 80 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI----- 80 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-----
Confidence 444433 33445556766665533 11 14666777776654335689888 5889999998864 332
Q ss_pred CCccccCchhhHHHHHHHcCCeee
Q 028240 186 WSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
..+....+++++|+++||.++
T Consensus 81 ---vSP~~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 81 ---VSPGTTQELLAAANDSDVPLL 101 (201)
T ss_pred ---ECCCCCHHHHHHHHHcCCCEe
Confidence 122335689999999999875
No 63
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=71.61 E-value=34 Score=27.14 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcC-CCcHHH---HHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYG-PYTNEI---LLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~~E~---~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (211)
++++...+.+.+.++|..|+=|+..|+ .|-+.+ .+.+.++ .+ +-.|..-.. + +.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi--------r-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV--------R-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC--------C-CHHHHHHHH
Confidence 557778999999999999999998886 333332 3334433 21 334442211 1 678888889
Q ss_pred HHHHhhcCCCc
Q 028240 116 EASLRRLDVEY 126 (211)
Q Consensus 116 ~~sL~~Lg~~~ 126 (211)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999875
No 64
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.36 E-value=31 Score=29.89 Aligned_cols=80 Identities=15% Similarity=-0.001 Sum_probs=55.0
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHc------CcccEEEeCCCCHHHHHHHhccCCceEEeccCCccccC-chhhHHHHHH
Q 028240 130 YYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCR 202 (211)
Q Consensus 130 ~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~ 202 (211)
+++..|-+..+.++.++.+.+|++. +.=-..|=|.++...+.++++....+++|+..+-.-.- ....+.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554333322456777777766 44445666778899999999888889999988753211 2356899999
Q ss_pred HcCCeee
Q 028240 203 FVRLAVK 209 (211)
Q Consensus 203 ~~gi~v~ 209 (211)
.+||.++
T Consensus 310 a~Gi~~~ 316 (369)
T cd03314 310 EHGVGAY 316 (369)
T ss_pred HcCCcEE
Confidence 9999876
No 65
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=70.97 E-value=38 Score=27.51 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (211)
+.+.+.-.+..+-..+-+++++|=|=.+..+... .+.-+++++-+.|+++|-+-. =-++-++-..+++.+
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d 142 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLED 142 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHH
Confidence 4478888888888889999998888776665443 356799999999999997543 233444444444444
No 66
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=70.87 E-value=71 Score=27.83 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHH-cCCCeEeCCCCcCCCcHHHHHHHHHhc-CCCCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~~E~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
.++++..+.++.+++ .|++.|=.--.-.+-..+...=+++++ .+ ++.|..-... .++++. ..
T Consensus 167 ~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~--~~~l~vDaN~----------~w~~~~----A~ 230 (395)
T cd03323 167 LTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFP--GARLRLDPNG----------AWSLET----AI 230 (395)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCC--CCcEEEeCCC----------CcCHHH----HH
Confidence 356666677777775 699986432210010111112233333 32 2333333221 123443 23
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCccccC-ch
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IE 194 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 194 (211)
+.+++|. - ++.++..|-+ -++.+.+|++...+. +.|=|-++..++.++++....+++|......--- .-
T Consensus 231 ~~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~ 301 (395)
T cd03323 231 RLAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGS 301 (395)
T ss_pred HHHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHH
Confidence 3334443 2 5666776643 467788888776555 6676778889999999988899999887643211 13
Q ss_pred hhHHHHHHHcCCeee
Q 028240 195 NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~ 209 (211)
.++...|+++|+.+.
T Consensus 302 ~kia~~A~~~gi~~~ 316 (395)
T cd03323 302 VRVAQVCETWGLGWG 316 (395)
T ss_pred HHHHHHHHHcCCeEE
Confidence 479999999999875
No 67
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=70.53 E-value=52 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEee
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQH 133 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh 133 (211)
+.+.+++.++..+ +++.+++.+|.+.
T Consensus 173 t~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 173 SDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 6777777777554 4788888887765
No 68
>PLN02363 phosphoribosylanthranilate isomerase
Probab=70.34 E-value=21 Score=29.25 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=44.3
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-CCCHHHHHHHhccCCceEEeccCC
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
.++|.|++=+.+........+.+.+ +.+.+......++.+||. |-+++.+.++.+...++++|++-.
T Consensus 64 ~~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~ 131 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGN 131 (256)
T ss_pred HHcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 4589999988753322222334433 333333333246789996 788999999999899999999754
No 69
>PRK07094 biotin synthase; Provisional
Probab=70.26 E-value=35 Score=28.59 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC----CCcCCCcHHHHHHHHHhcCCC-CcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTA----DKYGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~~E~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
.+.++..+.++.+.+.|++.|--. +.|. . ..+-+.++.+.. .++.+..-.+. .+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~---~-~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l-- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT---D-EKIADIIKEIKKELDVAITLSLGE-----------RSYEEY-- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---H-HHHHHHHHHHHccCCceEEEecCC-----------CCHHHH--
Confidence 367888889999999999976432 2222 2 233344443222 24433321111 122222
Q ss_pred HHHHHHhhcCCCceeEEEeec--------CCCCCCHHHHHHHHHHHHHcCccc----EEEeCCCCHHHHHHHhc
Q 028240 114 CCEASLRRLDVEYIDLYYQHR--------VDTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPDTIRRAHA 175 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~--------~~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~ 175 (211)
+.|++.|++.+.+- +.. .......++.+++++.+++.|.-- -+|+...+.+++.+.+.
T Consensus 133 ---~~Lk~aG~~~v~~g-lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 133 ---KAWKEAGADRYLLR-HETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred ---HHHHHcCCCEEEec-cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 34566676654421 111 112345778999999999999632 25666677777666443
No 70
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=70.00 E-value=18 Score=28.58 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEEeccCCccccC
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARD 192 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 192 (211)
.+-+.|-+-|+..+.+=+ +. ...++.+++++++.-=-.||.-+ .++++++++++.+. +++ ..+.
T Consensus 24 ~~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi------vsP~ 88 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI------VSPG 88 (204)
T ss_pred HHHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE------ECCC
Confidence 344556666776665533 12 24677777777664435789988 58899999888642 222 1222
Q ss_pred chhhHHHHHHHcCCeee
Q 028240 193 IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 193 ~~~~~~~~~~~~gi~v~ 209 (211)
...+++++|+++||.++
T Consensus 89 ~~~~v~~~~~~~~i~~i 105 (204)
T TIGR01182 89 LTPELAKHAQDHGIPII 105 (204)
T ss_pred CCHHHHHHHHHcCCcEE
Confidence 35689999999999875
No 71
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=69.97 E-value=33 Score=30.49 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCeEeCCCC---------cCCCcHHHHHHHHHhcCCC---CcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 46 SIIKHAFSKGITFFDTADK---------YGPYTNEILLGKALKELPR---ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~---------Yg~g~~E~~lG~~l~~~~r---~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
+.++..-+.|+|.+..+-. .+.+++.+.+-++++.... +.+-+.--++.+. -+.+.+.+
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg---------qt~e~~~~ 223 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH---------QTVESFRE 223 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC---------CCHHHHHH
Confidence 4566666678888764422 2223333333344443211 2233333334332 27888888
Q ss_pred HHHHHHhhcCCCceeEEEe-ecCCC----------C-CCHHH----HHHHHHHHHHcCcccEEEeCCCCH
Q 028240 114 CCEASLRRLDVEYIDLYYQ-HRVDT----------S-VPIEE----TIGEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~l-h~~~~----------~-~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
.++..+ +++.+++.+|.+ |.|.. . .+.++ ...+.+.|.+.|. ..+|+++|..
T Consensus 224 tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 224 TLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred HHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 888776 589999999866 33320 0 11222 2245677778887 4589999864
No 72
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=69.44 E-value=62 Score=26.54 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC------CHHHHHHHHHHHHHcCcccEEEeCCCC---HHHHHHHhc
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHA 175 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~ 175 (211)
.++.+... .+-+.|.++|+++|++-+........ ...+.++.+.++.+ +..+..+++... .+.++.+.+
T Consensus 16 ~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 44555554 45555999999999997654432110 11356666666553 346666666543 455555544
Q ss_pred cCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 176 VHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 176 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
. .++.+.+.+..-.-..-.+.+++++++|+.|.
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~ 126 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVF 126 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEE
Confidence 3 34444443333222223468888899987664
No 73
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=69.34 E-value=63 Score=26.60 Aligned_cols=109 Identities=9% Similarity=-0.041 Sum_probs=62.0
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCC-CcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcc
Q 028240 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTAD-KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTS 101 (211)
Q Consensus 23 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~ 101 (211)
.||+++|....--+.-.+++...+-.-+.....+|.++.=. .|.. .+++.+-++.++ ..+++..+.|+........
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~~- 80 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITHQR- 80 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccchh-
Confidence 45666665543112222332332323344455577655433 3432 277788888875 5789999999975432211
Q ss_pred cccCCC--hHHHHHHHHHHHhhcCCCceeEEEeecCCCC
Q 028240 102 VIVKGT--PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (211)
Q Consensus 102 ~~~~~s--~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~ 138 (211)
... -..+.+.+.+.++.|| +++..+++.-|..-
T Consensus 81 ---~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 81 ---RLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred ---hhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 111 2345555666666777 58999999988543
No 74
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=68.32 E-value=46 Score=29.33 Aligned_cols=111 Identities=11% Similarity=0.025 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCCeEeCCCC---------cCCCcHHHHHHHHHhcCCCCc---EEEEeccccccCCCcccccCCChHHHHH
Q 028240 46 SIIKHAFSKGITFFDTADK---------YGPYTNEILLGKALKELPREN---IQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~---------Yg~g~~E~~lG~~l~~~~r~~---~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
+.++..-+.|++.+...-. .+.+++.+.+-++++...... +-+.--++.+ .-+.+.+.+
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP---------~qt~e~~~~ 212 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP---------GQTHASWME 212 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC---------CCCHHHHHH
Confidence 4455555678887654322 233444443444444322222 2223333433 237888888
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCC-------CCHH---HHH-HHHHHHHHcCcccEEEeCCCCH
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTS-------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~-------~~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
.++..+ +|+.+++.+|.+.-.... ...+ +.+ .+.+.|.+.|. +.+++|+|.-
T Consensus 213 ~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 213 SLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred HHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 888876 589999999987542211 0111 233 34566677775 5689998864
No 75
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=67.61 E-value=41 Score=29.38 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=56.9
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHc
Q 028240 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFV 204 (211)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~ 204 (211)
.++.++..|-+. +-++.+.+|++.-.+. +.|=|-++...++++++...++++|+...-.-- .....+.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 355666666432 2367788888775555 667777899999999998889999987775321 1234789999999
Q ss_pred CCeee
Q 028240 205 RLAVK 209 (211)
Q Consensus 205 gi~v~ 209 (211)
|+.+.
T Consensus 308 gi~~~ 312 (404)
T PRK15072 308 QVRTG 312 (404)
T ss_pred CCcee
Confidence 99875
No 76
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.55 E-value=78 Score=27.00 Aligned_cols=149 Identities=8% Similarity=0.030 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHh
Q 028240 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (211)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (211)
+++..+.++.+.+.|++.|=.--....-..+...=+++++.-.+++.|..-... .++.+...+-++ .|+
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~~-~l~ 210 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERGQ-ALD 210 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHHH-HHH
Confidence 455666677777889886532111110002223334555433345544443321 124444333222 234
Q ss_pred hcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCccccC-chhhHH
Q 028240 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIV 198 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~ 198 (211)
.+ ++.++..|-.. +-++.+.+|++.--+. +.|=+.++..++.++++...++++|+..+..--- .-.++.
T Consensus 211 ~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia 281 (355)
T cd03321 211 QE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRAS 281 (355)
T ss_pred cC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHH
Confidence 44 44555666432 2456677777664332 5566668999999999888889999887753211 124689
Q ss_pred HHHHHcCCeee
Q 028240 199 PLCRFVRLAVK 209 (211)
Q Consensus 199 ~~~~~~gi~v~ 209 (211)
+.|+.+|+.+.
T Consensus 282 ~~A~~~gi~~~ 292 (355)
T cd03321 282 ALAEQAGIPMS 292 (355)
T ss_pred HHHHHcCCeec
Confidence 99999999875
No 77
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=67.55 E-value=74 Score=26.72 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCC--CcHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
..+.++..++++.+.+.|++.+.-...-.- -.-.+++. .+++.. ..++.|+|-... +.+.
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l----------------l~~~ 110 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL----------------LARR 110 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh----------------HHHH
Confidence 356789999999999999988765421110 01222222 233321 234556555321 2222
Q ss_pred HHHHHhhcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCc----ccEEEeCCCCHHHHHHHhcc---CCc
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV---HPI 179 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~~ 179 (211)
+ +.|...|++.+. +-+|..++ ...++.++++++.+++.|. +..+.+...+.+++.++.+. .++
T Consensus 111 ~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 A-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred H-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2 334555665543 33454432 2347899999999999986 33444445666666665443 344
Q ss_pred eEEeccCCccccC---------chhhHHHHHHHcCCe
Q 028240 180 TAVQLEWSLWARD---------IENEIVPLCRFVRLA 207 (211)
Q Consensus 180 ~~~q~~~~~~~~~---------~~~~~~~~~~~~gi~ 207 (211)
.+.-++|...... ...++++..+++|+.
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWT 225 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCc
Confidence 4444444432221 123577777777554
No 78
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.42 E-value=35 Score=27.08 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc---cCCceEE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA---VHPITAV 182 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 182 (211)
++.+... .+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++...+ ...++.+
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 3444444 44456999999999987 332222223445555555555 4455666666666666443 2444444
Q ss_pred eccCCccc--------------cCchhhHHHHHHHcCCee
Q 028240 183 QLEWSLWA--------------RDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 183 q~~~~~~~--------------~~~~~~~~~~~~~~gi~v 208 (211)
.+..+.-+ -..-.+.+.++++.|..|
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44433322 111245788888888776
No 79
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.26 E-value=67 Score=26.09 Aligned_cols=97 Identities=21% Similarity=0.118 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH-cCcccEEEeCCCCHHHHHHHhccCCceEE
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 182 (211)
..++.+...+-++. |.++|+++|++- ....-+.-++.++.+.+ ...++..+++..+.+.++.+.+. .++.+
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i 86 (259)
T cd07939 15 VAFSREEKLAIARA-LDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAV 86 (259)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEE
Q ss_pred eccCCcccc--------------CchhhHHHHHHHcCCee
Q 028240 183 QLEWSLWAR--------------DIENEIVPLCRFVRLAV 208 (211)
Q Consensus 183 q~~~~~~~~--------------~~~~~~~~~~~~~gi~v 208 (211)
.+.++.-+. ..-.+.+++|+++|+.|
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 126 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV 126 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
No 80
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.87 E-value=70 Score=26.21 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (211)
..+.++..++++...+.|+..++...
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 35678999999999999999999863
No 81
>PRK08609 hypothetical protein; Provisional
Probab=66.79 E-value=1.1e+02 Score=28.28 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcC-----CCcHHHHHHHHHh------c-CCCCcEEEEeccccccCCCcccccCCChHHH
Q 028240 44 GISIIKHAFSKGITFFDTADKYG-----PYTNEILLGKALK------E-LPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg-----~g~~E~~lG~~l~------~-~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i 111 (211)
..+++++|.+.|++.+=.++++. .|.+...+-..++ + ++.=+|+...-+... ++..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~------------~~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL------------PDGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec------------CCcc
Confidence 45589999999999999988863 1223333333222 1 111133333333321 1111
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC------CC--HHHHHHHhcc---CCce
Q 028240 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--PDTIRRAHAV---HPIT 180 (211)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~~--~~~l~~~~~~---~~~~ 180 (211)
..-.+..|+. .||+ +.-+|++- ..+.+++++.+.++.+.|.+.-||=-. .. ...+++.++. .. .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 1222224443 4555 56668653 334567888899998888887776443 11 1233333322 11 2
Q ss_pred EEeccCCccccCchhhHHHHHHHcCCee
Q 028240 181 AVQLEWSLWARDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 181 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v 208 (211)
++|+.-+.+.......++..|++.|+.+
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i 521 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKL 521 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEE
Confidence 3444444433334467899999999865
No 82
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=66.58 E-value=43 Score=26.10 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCC--CCCHHHHHHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEec
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQL 184 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 184 (211)
......+...+++.+..- +-+.+--.+. ........+.+..|++.|. .+.+.+|.. ..+. .+...+++.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~-~l~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLS-YLKRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHH-HHHhCCCCeEEE
Confidence 334566677777766542 2233332221 1233455689999999998 577777643 2333 333346777777
Q ss_pred cCCcccc--------CchhhHHHHHHHcCCeeee
Q 028240 185 EWSLWAR--------DIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 185 ~~~~~~~--------~~~~~~~~~~~~~gi~v~a 210 (211)
+.++... ..-+.+...|+..|+.|+|
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 6654422 1224578999999999986
No 83
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=66.50 E-value=12 Score=29.32 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccC-CceEEecc
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQLE 185 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 185 (211)
.+... .+-+.|-.-|+..+.+=+ -++ ..++.++.++++--=-.||..+ .+.++++++++.+ .|-+
T Consensus 19 ~~~a~-~~~~al~~gGi~~iEiT~---~t~-----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv---- 85 (196)
T PF01081_consen 19 PEDAV-PIAEALIEGGIRAIEITL---RTP-----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV---- 85 (196)
T ss_dssp GGGHH-HHHHHHHHTT--EEEEET---TST-----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE----
T ss_pred HHHHH-HHHHHHHHCCCCEEEEec---CCc-----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE----
Confidence 34443 344445556766555432 111 2445555555442235689988 5889999998864 3421
Q ss_pred CCccccCchhhHHHHHHHcCCeee
Q 028240 186 WSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.+...++++++|+++|+.++
T Consensus 86 ----SP~~~~~v~~~~~~~~i~~i 105 (196)
T PF01081_consen 86 ----SPGFDPEVIEYAREYGIPYI 105 (196)
T ss_dssp ----ESS--HHHHHHHHHHTSEEE
T ss_pred ----CCCCCHHHHHHHHHcCCccc
Confidence 22335689999999999875
No 84
>smart00642 Aamy Alpha-amylase domain.
Probab=66.19 E-value=11 Score=28.71 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.9
Q ss_pred hhHHHHHHHcCCeeee
Q 028240 195 NEIVPLCRFVRLAVKS 210 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~a 210 (211)
+.+++.|+++||.|+.
T Consensus 73 ~~lv~~~h~~Gi~vil 88 (166)
T smart00642 73 KELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 5799999999999873
No 85
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=64.99 E-value=33 Score=28.17 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=52.0
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCCCCcCC-CcHHH---HHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 40 SEE-DGISIIKHAFSKGITFFDTADKYGP-YTNEI---LLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~~E~---~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
+++ +...+.+.|+++|..|+=|+-.|+. |-+.+ ++-+.++++. ..--+.-|..-.. .+.+...+-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~-~~~~vgIKAsGGI---------rt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMG-VAKTVGFKPAGGV---------RTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcc-cCCCeeEEccCCC---------CCHHHHHHH
Confidence 334 5888999999999999999999874 43333 3334443210 0112444543221 168888899
Q ss_pred HHHHHhhcCCCcee
Q 028240 115 CEASLRRLDVEYID 128 (211)
Q Consensus 115 ~~~sL~~Lg~~~iD 128 (211)
++..-+.||-+|++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 99999999988765
No 86
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=64.60 E-value=71 Score=25.49 Aligned_cols=85 Identities=9% Similarity=-0.001 Sum_probs=48.4
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCH-HHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEEeccCCccccC-c
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARD-I 193 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 193 (211)
+.+..+|++ .+.+|..+..... .--|+.+.++++.-.+.-+.... .+++.++++++....+.+.+---+.... .
T Consensus 156 ~~l~~~G~d---~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELGAG---EILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCCCC---EEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 444566754 5666665432111 11366667777665666666665 4788999888865665555533333322 1
Q ss_pred hhhHHHHHHHc
Q 028240 194 ENEIVPLCRFV 204 (211)
Q Consensus 194 ~~~~~~~~~~~ 204 (211)
-.++...|++|
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 24577777765
No 87
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=64.54 E-value=48 Score=29.41 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCeEeCCCC---------cCCCcHHHHHHHHHhcCCC---CcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 46 SIIKHAFSKGITFFDTADK---------YGPYTNEILLGKALKELPR---ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~---------Yg~g~~E~~lG~~l~~~~r---~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
+.++..-++|++.+-.+-. .+.+++.+.+-++++.... +.+-+.--++.+. -+.+.+.+
T Consensus 152 e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------qt~e~~~~ 222 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK---------QTKESFAK 222 (455)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC---------CCHHHHHH
Confidence 4455666669988754422 2223333333344443222 1222333334332 27888888
Q ss_pred HHHHHHhhcCCCceeEEEe-ecCC----------CC-CCHH---HHHH-HHHHHHHcCcccEEEeCCCCH
Q 028240 114 CCEASLRRLDVEYIDLYYQ-HRVD----------TS-VPIE---ETIG-EMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~l-h~~~----------~~-~~~~---~~~~-~l~~l~~~G~ir~iGvs~~~~ 167 (211)
.++..++ ++.+++.+|.+ +.|. .. .+.+ +.++ +.+.|.+.|. ..+++++|..
T Consensus 223 tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 223 TLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred HHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 8887655 89999999977 2221 00 1122 2233 4555666675 6799999864
No 88
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.95 E-value=82 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEee
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQH 133 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh 133 (211)
+.+.+.+.++... +++.+++.+|.+.
T Consensus 164 t~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 164 TLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 5566666665554 3566666666543
No 89
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=63.86 E-value=73 Score=28.34 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=52.8
Q ss_pred HHHHHhhcCCCceeEEE-------eecCCCCCCHHHHHHHHHHHHHcCcccE----EEeCCCCHHHHHHHhcc---CCce
Q 028240 115 CEASLRRLDVEYIDLYY-------QHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPIT 180 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~-------lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~ 180 (211)
+-+.|++.|+.++.+=+ +....-....++..++++.+++.|.--. +|+-+.+.+.+++.++. .+++
T Consensus 289 ~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~ 368 (472)
T TIGR03471 289 TLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPH 368 (472)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 33455666766544322 1112222346678889999999987543 36667777777665443 3344
Q ss_pred EEeccCCccccCchhhHHHHHHHcCC
Q 028240 181 AVQLEWSLWARDIENEIVPLCRFVRL 206 (211)
Q Consensus 181 ~~q~~~~~~~~~~~~~~~~~~~~~gi 206 (211)
.++ ++++..-+..++.+.++++|+
T Consensus 369 ~~~--~~~l~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 369 TIQ--VSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred cee--eeecccCCCcHHHHHHHHCCC
Confidence 333 444444455678888888775
No 90
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=63.78 E-value=65 Score=28.04 Aligned_cols=111 Identities=13% Similarity=0.026 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCeEeCCCCc---------CCCcHHHHHHHHHhcCC--CCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 46 SIIKHAFSKGITFFDTADKY---------GPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y---------g~g~~E~~lG~~l~~~~--r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
+.++..-++|+|.+-..-.- |.+++-+.+-++++... -..+-+-.=.+.+. -+.+.+++.
T Consensus 112 e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg---------qt~e~~~~~ 182 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG---------QTLKDWQEE 182 (390)
T ss_pred HHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC---------CCHHHHHHH
Confidence 45666667888877544322 22333332223333211 12333333344432 267889999
Q ss_pred HHHHHhhcCCCceeEEEeec-CCC-----------C-CCHH---HHH-HHHHHHHHcCcccEEEeCCCCH
Q 028240 115 CEASLRRLDVEYIDLYYQHR-VDT-----------S-VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~-~~~-----------~-~~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
++..++ |+.++|.+|.+.- |.. . .+.+ +.+ .+.+.|.+.|..+ +++|||..
T Consensus 183 l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 183 LKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred HHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 999886 8999999998763 211 0 1111 233 3455566778754 79999863
No 91
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=63.58 E-value=1.1e+02 Score=27.23 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=53.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCe
Q 028240 129 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLA 207 (211)
Q Consensus 129 l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 207 (211)
+.++..|-+..+..+-++.+.+|++.-.+. +.|=+.++..++.++++...++++|......--.....+.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 446666654322112367777887664443 4566668889999999888888888886421111135799999999998
Q ss_pred eee
Q 028240 208 VKS 210 (211)
Q Consensus 208 v~a 210 (211)
+..
T Consensus 332 v~~ 334 (441)
T TIGR03247 332 WGS 334 (441)
T ss_pred EEE
Confidence 753
No 92
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=63.24 E-value=29 Score=30.76 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEee-cCC----------CCC-CHH---HHH-HHHHHHHHcCcccEEEeCCCCH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQH-RVD----------TSV-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh-~~~----------~~~-~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
+.+.+.+.++..+ +++.+++.+|.+- .|. ... +.+ +.+ .+.+.|.+.|..+ +++|+|..
T Consensus 216 t~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 216 TPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 6788888888776 4899999999764 111 001 122 223 3456667778754 89999864
No 93
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=62.91 E-value=54 Score=24.23 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=45.6
Q ss_pred CCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhc--CCCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 028240 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL--DVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (211)
Q Consensus 82 ~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L--g~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (211)
+|=.+.|+-|++.. ..+..|++.+.++++.. .+...|++++.......++.+....|.++.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 35567777776532 25778888888888766 34568999999987767777777777776654
No 94
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=62.52 E-value=51 Score=27.02 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHhhcCCC--------------------------ceeEEEeecCCCCCCHH---HHHHHHHHHHHcCcc
Q 028240 107 TPEYVRSCCEASLRRLDVE--------------------------YIDLYYQHRVDTSVPIE---ETIGEMKKLVEEGKI 157 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~--------------------------~iDl~~lh~~~~~~~~~---~~~~~l~~l~~~G~i 157 (211)
+.+. ++.++++|++.|.. ..|+++|..|....+.. +.++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3344 67788888887754 67899999987777654 78999999999977
Q ss_pred cEEEeCCCCHHHHHHHh
Q 028240 158 KYIGLSEASPDTIRRAH 174 (211)
Q Consensus 158 r~iGvs~~~~~~l~~~~ 174 (211)
.|=+.+|+...+.+..
T Consensus 191 -tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 191 -TVLMVTHDLGLVMAYF 206 (254)
T ss_pred -EEEEEeCCcHHhHhhC
Confidence 7778888887776653
No 95
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=61.72 E-value=61 Score=25.62 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=54.1
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHc
Q 028240 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFV 204 (211)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~ 204 (211)
.++.++..|-+.. -++.+.+|++...+. +.+=|-++.+.+.+++....++++|+..+..-. ..-..+...|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566677765432 356677777776665 444455778888888888888999988775321 1124688999999
Q ss_pred CCeee
Q 028240 205 RLAVK 209 (211)
Q Consensus 205 gi~v~ 209 (211)
|+.+.
T Consensus 196 gi~~~ 200 (229)
T cd00308 196 GIRVM 200 (229)
T ss_pred CCEEe
Confidence 99875
No 96
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=61.67 E-value=18 Score=26.37 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=16.7
Q ss_pred cCchhhHHHHHHHcCCeeee
Q 028240 191 RDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a 210 (211)
+..-.++++.|+++||.|+|
T Consensus 43 ~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEE
Confidence 44456899999999999986
No 97
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=61.28 E-value=97 Score=25.90 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=86.0
Q ss_pred CcccccceeccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCcCCCc---HHHHHHHHHhcCC--CCcEEEEec
Q 028240 18 GLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYT---NEILLGKALKELP--RENIQVATK 91 (211)
Q Consensus 18 g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~g~---~E~~lG~~l~~~~--r~~~~i~tK 91 (211)
|.+| .|.||+|.-+.......+.++..+.+...+ ..|++.+|--..|+.-. +-..+-++|+.+. ...+.|+.-
T Consensus 67 G~kV-iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~T 145 (294)
T cd06543 67 GGDV-IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFT 145 (294)
T ss_pred CCeE-EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4443 557787763321112234555555555555 55999999877776311 1244556665432 224444444
Q ss_pred cccccCCCcccccCCChHHHHHHHHHHHhhcC--CCceeEEEeecCCC--CCCH-HHHHHHHHHHHHcCcccEEEeCCCC
Q 028240 92 FGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDT--SVPI-EETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg--~~~iDl~~lh~~~~--~~~~-~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
+.... ..++++.+ .+-+..+..| +++|.++-...-.. ..++ ..+..+++.++.+=+--+= .++
T Consensus 146 lp~~p-------~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~---~~s 213 (294)
T cd06543 146 LPVLP-------TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYP---KLS 213 (294)
T ss_pred cCCCC-------CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHcc---CCC
Confidence 43211 11222221 2333444555 45555555433222 1232 3455666666554111111 145
Q ss_pred HHHHHHHhccCCc-eEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 167 PDTIRRAHAVHPI-TAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 167 ~~~l~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
..++-..+...|. -.+=..-.++....-..+..|++++||+-+++
T Consensus 214 ~~~~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~ 259 (294)
T cd06543 214 DAELWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSM 259 (294)
T ss_pred HHHHHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEee
Confidence 5555555554431 11111101233333356899999999988764
No 98
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=61.14 E-value=89 Score=25.41 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (211)
..+.++..++++...+.|+..++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEee
Confidence 4677999999999999999999997
No 99
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=61.05 E-value=49 Score=26.43 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcC-CCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYG-PYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
.++++..++.+.++++|..|+=|+..|+ .|.+.+.+....+.. +.+ +..|..... .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~--~~IKasGGI---------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPR--VGVKASGGI---------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCC--ceEEeeCCc---------CCHHHHHHHHHc
Confidence 4678889999999999999999999885 355555554443332 222 223332111 167777777777
Q ss_pred HHhhcCCCc
Q 028240 118 SLRRLDVEY 126 (211)
Q Consensus 118 sL~~Lg~~~ 126 (211)
--.|+|+++
T Consensus 201 GA~riGtS~ 209 (221)
T PRK00507 201 GATRLGTSA 209 (221)
T ss_pred CcceEccCc
Confidence 777777653
No 100
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.00 E-value=32 Score=27.34 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCc---ccEEEeCC-CCHHHHHHHhccC-CceEEeccCCc
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK---IKYIGLSE-ASPDTIRRAHAVH-PITAVQLEWSL 188 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~---ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~~~ 188 (211)
.+-+.|-.-|+.-+.+=+- . ...++.+++++++-. =-.||..+ .+.++++++++.+ .|-+
T Consensus 29 ~~~~al~~~Gi~~iEit~~-~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv------- 93 (213)
T PRK06552 29 KISLAVIKGGIKAIEVTYT-N-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV------- 93 (213)
T ss_pred HHHHHHHHCCCCEEEEECC-C-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-------
Confidence 3445566667766665431 1 146677777766521 14689888 5889999998864 3321
Q ss_pred cccCchhhHHHHHHHcCCeee
Q 028240 189 WARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.+....+++++|+++||.++
T Consensus 94 -sP~~~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 94 -SPSFNRETAKICNLYQIPYL 113 (213)
T ss_pred -CCCCCHHHHHHHHHcCCCEE
Confidence 23335689999999999875
No 101
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=60.82 E-value=48 Score=25.48 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=67.7
Q ss_pred HHHHH--HcCCCeEeCCCCcC-------CCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcc--cccCCChHHHHHHHH
Q 028240 48 IKHAF--SKGITFFDTADKYG-------PYTNEILLGKALKELPRENIQVATKFGFVELGFTS--VIVKGTPEYVRSCCE 116 (211)
Q Consensus 48 l~~A~--~~Gi~~~DtA~~Yg-------~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~--~~~~~s~~~i~~~~~ 116 (211)
.++|. ..++-++||-..-- .|+.+..+-..+++ .|-++.|.++-.-++..++. .....++..+..-++
T Consensus 71 ~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~ 149 (187)
T COG3172 71 EDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLE 149 (187)
T ss_pred HHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHH
Confidence 44444 34899999974321 13345566666665 36677777665433333321 112236788888999
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 155 (211)
+.|++-+..| +.+..++.......++++.+++...+
T Consensus 150 ~~L~~~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 150 QMLEENNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHhCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999988776 45567666667788999999998776
No 102
>PRK14017 galactonate dehydratase; Provisional
Probab=60.14 E-value=1.1e+02 Score=26.32 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCC-----cCCC---cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADK-----YGPY---TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~-----Yg~g---~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i 111 (211)
++++..+.+..+.+.|++.|=.--. ++.. ......=+++++.-.+++.|..=... .++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~----------~w~~~~- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHG----------RVHKPM- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCC----------CCCHHH-
Confidence 4566777788888999998754210 1100 01112223333321223333332221 123433
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCccc
Q 028240 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (211)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 190 (211)
..+.++.|. .+++.++..|-+.. -++.+.+|++...+. +.|=|.++...+.++++...++++|+..+..=
T Consensus 193 ---A~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 193 ---AKVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ---HHHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 223333332 24556666664322 357788888876665 66667789999999999888899999876532
Q ss_pred c-CchhhHHHHHHHcCCeee
Q 028240 191 R-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 191 ~-~~~~~~~~~~~~~gi~v~ 209 (211)
- ..-..+.+.|+++||.+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~ 283 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALA 283 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEe
Confidence 1 123579999999999875
No 103
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=60.00 E-value=58 Score=25.35 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCC--CCCHHHHHHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEec
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQL 184 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 184 (211)
+.....+...++..+... +.+.+--++. ........+.+..|++.|. .+++.+|.. ..++. +...+|+++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~-l~~~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSY-LKRLPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHH-HHhCCCCEEEE
Confidence 445667778888887664 2233322222 2344568899999999998 677777643 33333 33345677766
Q ss_pred cCCccccC--------chhhHHHHHHHcCCeeee
Q 028240 185 EWSLWARD--------IENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 185 ~~~~~~~~--------~~~~~~~~~~~~gi~v~a 210 (211)
..++...- .-+.+...|+..|+.|+|
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 207 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVA 207 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEE
Confidence 65543321 224588999999999986
No 104
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.83 E-value=1.1e+02 Score=26.18 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC--cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPY--TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
++++..+.++.+.+.|++.|=.- .++.. ......=+++++.-.+++.|..-... .++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~----------~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGAH----------WYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECCC----------CcCHHHHHH-HHH
Confidence 56777788888899999987652 22211 01112223344321223333322211 123332221 222
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCC-HHHHHHHhccCCceEEeccCCcccc-Cch
Q 028240 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEAS-PDTIRRAHAVHPITAVQLEWSLWAR-DIE 194 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~~ 194 (211)
.|+.+ ++.++..|-+. . -++.+.+|+++-.+. +.|=+-++ +.++.++++....+++|...+..-- ..-
T Consensus 211 ~l~~~-----~l~~iEeP~~~---~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEEL-----GFFWYEDPLRE---A-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhhc-----CCCeEeCCCCc---h-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 23333 44455555332 2 346777888875554 22333366 8889999888889999998875321 123
Q ss_pred hhHHHHHHHcCCeee
Q 028240 195 NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~ 209 (211)
..+...|+++|+.+.
T Consensus 282 ~~ia~~a~~~gi~~~ 296 (368)
T cd03329 282 MKTAHLAEAFGLDVE 296 (368)
T ss_pred HHHHHHHHHcCCEEE
Confidence 479999999999874
No 105
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=59.74 E-value=97 Score=25.43 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHH--HHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEIL--LGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~--lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
+...+.++..-+.|..++..++.-+.+..+.. +.+.|++ .-.+-..-.+.-. +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~--~~g~~~i~Hlt~r---------~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKK--ETGIPTVPHLTCI---------GATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHH--hcCCCeeEEeeec---------CCCHHHHHHHHHHH-
Confidence 55666677767889999999987664434443 3334442 1122222222111 23677788777755
Q ss_pred hhcCCCceeEEEee-cCC------CCCCHHHHHHHHHHHHHcCcccEEEeCCCC--------H-HHHHHHh---cc-CCc
Q 028240 120 RRLDVEYIDLYYQH-RVD------TSVPIEETIGEMKKLVEEGKIKYIGLSEAS--------P-DTIRRAH---AV-HPI 179 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh-~~~------~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--------~-~~l~~~~---~~-~~~ 179 (211)
..+|++ +++.+- .|. ....+..+.+-++.+++..---+||+..+. . .+++.+. +. ..+
T Consensus 83 ~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f 160 (272)
T TIGR00676 83 RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY 160 (272)
T ss_pred HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 788865 344342 221 112234555555556554223578877531 1 2233332 22 345
Q ss_pred eEEeccCCccccCchhhHHHHHHHcCCe
Q 028240 180 TAVQLEWSLWARDIENEIVPLCRFVRLA 207 (211)
Q Consensus 180 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 207 (211)
-+-|.-|+.- .-.+.++.|++.|+.
T Consensus 161 ~iTQ~~fd~~---~~~~~~~~~~~~gi~ 185 (272)
T TIGR00676 161 AITQLFFDND---DYYRFVDRCRAAGID 185 (272)
T ss_pred EeeccccCHH---HHHHHHHHHHHcCCC
Confidence 5666666642 224678899999765
No 106
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=59.50 E-value=63 Score=27.63 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCCCCcCCCcHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKG-ITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~g~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
.+.++..+.-+.|-+.| .+|...|..++.|+.-..+-++++.+. --.+-++--+|. .+.+. -
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq-----~ 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQ-----A 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHH-----H
Confidence 35677778888888999 888888877763334445555555432 222333333332 12333 3
Q ss_pred HHHhhcCCCceeEEEeecCCC----------CCCHHHHHHHHHHHHHcCcccEE----EeCCCCHHHHHHHhccCCce-E
Q 028240 117 ASLRRLDVEYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKYI----GLSEASPDTIRRAHAVHPIT-A 181 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~----------~~~~~~~~~~l~~l~~~G~ir~i----Gvs~~~~~~l~~~~~~~~~~-~ 181 (211)
+-|+.-|+++ +-|+.+. ...+++-++.++.+++.|.=-+. |+.+-..+.++-+....... +
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3456667764 3454433 23478999999999999986654 44444444455444332222 4
Q ss_pred EeccCCcccc
Q 028240 182 VQLEWSLWAR 191 (211)
Q Consensus 182 ~q~~~~~~~~ 191 (211)
-.+++|.+++
T Consensus 224 dsVPIn~l~P 233 (335)
T COG0502 224 DSVPINFLNP 233 (335)
T ss_pred CeeeeeeecC
Confidence 4455666554
No 107
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.46 E-value=1e+02 Score=25.70 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC----------CHHHHHHHHHHHH
Q 028240 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV----------PIEETIGEMKKLV 152 (211)
Q Consensus 83 r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~----------~~~~~~~~l~~l~ 152 (211)
.+++.|..|+........ ..+.+... .+-+.|+..|+++|++ +...... .....++.+..++
T Consensus 206 g~d~~i~vris~~~~~~~----g~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir 277 (327)
T cd02803 206 GPDFPVGVRLSADDFVPG----GLTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIK 277 (327)
T ss_pred CCCceEEEEechhccCCC----CCCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHH
Confidence 357889999875432111 12344333 3344556778766654 3322111 1123456666676
Q ss_pred HcCcccEEEeCCC-CHHHHHHHhccCCceEEec
Q 028240 153 EEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 153 ~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 184 (211)
+.=.+.-++..+. +++.++++++....+.+++
T Consensus 278 ~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 278 KAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 6656777777775 5889999998766676665
No 108
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=59.21 E-value=69 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=25.7
Q ss_pred CHHHHHHHhccC--CceEEeccCCccccC----chhhHHHHHHHcCCeeee
Q 028240 166 SPDTIRRAHAVH--PITAVQLEWSLWARD----IENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 166 ~~~~l~~~~~~~--~~~~~q~~~~~~~~~----~~~~~~~~~~~~gi~v~a 210 (211)
+.+++++.+... +.-+.-++.|+.=+- .-..+.+.|++|||.|++
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 556666555443 333344455543332 224578888888888876
No 109
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=59.19 E-value=1.1e+02 Score=26.06 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCC----------------Cc--HHHHHHHHHhcCCCCcEEEEeccccccCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYGP----------------YT--NEILLGKALKELPRENIQVATKFGFVELGF 99 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----------------g~--~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~ 99 (211)
.++.+.-.++.+.|-+.|+-+|=|-..+.. |+ ...++....+ ..+.++++|=+.
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------ 157 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------ 157 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc------
Confidence 456788889999999999999877655541 00 1111111111 123555555443
Q ss_pred cccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHH-HHHHHHHHHHcCcccEEEeCCCCHHHHHH
Q 028240 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPDTIRR 172 (211)
Q Consensus 100 ~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 172 (211)
+-+.+.++++...++=.. |+.++|+.... .++++ -+.++..|.+.= ---||+|.|+..-+..
T Consensus 158 -------~~~ei~~av~~~r~~g~~---~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~ 221 (347)
T COG2089 158 -------TIEEIEEAVAILRENGNP---DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAP 221 (347)
T ss_pred -------cHHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHH
Confidence 456778777766655443 99999997654 34553 366666666652 4579999998764433
No 110
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=58.74 E-value=32 Score=24.13 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 163 SEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 163 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
+.-+++.+..+....+|+++-+-----.+....++.++++++||+|..|
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m 85 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVM 85 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEe
Confidence 3344555555444322443333222111223345777777777777543
No 111
>PRK09061 D-glutamate deacylase; Validated
Probab=58.33 E-value=1.2e+02 Score=27.38 Aligned_cols=111 Identities=11% Similarity=0.082 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH---h
Q 028240 44 GISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL---R 120 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL---~ 120 (211)
..++++.|++.|...|=+...|-++.+...+-..++...+.+..|.....-... .++.....++++.+ +
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHHH
Confidence 677888999999999987666654445555555555444456666666532110 01112222333333 3
Q ss_pred hcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCcccEEEeCCC
Q 028240 121 RLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (211)
..|. -+.+.|-... .....+.++.+++.+++|.--..-++-|
T Consensus 243 ~~G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 243 ETGA---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HhCC---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 4453 2555565432 2345688999999999986555455443
No 112
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=58.28 E-value=1.7e+02 Score=27.89 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCeEeCC-------------------CCcCCCcHH---HHH---HHHHhcCCCCcEEEEeccccccCCCc
Q 028240 46 SIIKHAFSKGITFFDTA-------------------DKYGPYTNE---ILL---GKALKELPRENIQVATKFGFVELGFT 100 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA-------------------~~Yg~g~~E---~~l---G~~l~~~~r~~~~i~tK~~~~~~~~~ 100 (211)
+..+.|.++|+..+|.- +.|| |.-| +++ =+++++.-.+++.|..|+.......+
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG-GSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 33456678999998852 2344 2222 122 23333323457889999876433221
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC----CCH--HHHHHHHHHHHHcCcccEEEeCCC-CHHHHHHH
Q 028240 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPI--EETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRA 173 (211)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----~~~--~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~ 173 (211)
..+.+... .+-+.|+..|+|+||+ |..... ... .-......++++.=.+--+++.+. +++.++++
T Consensus 634 ----g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~ 705 (765)
T PRK08255 634 ----GNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSI 705 (765)
T ss_pred ----CCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHH
Confidence 12344333 3444567788777665 422110 000 011223355565545666777774 78889999
Q ss_pred hccCCceEEec
Q 028240 174 HAVHPITAVQL 184 (211)
Q Consensus 174 ~~~~~~~~~q~ 184 (211)
++....+.+.+
T Consensus 706 l~~g~~D~v~~ 716 (765)
T PRK08255 706 IAAGRADLCAL 716 (765)
T ss_pred HHcCCcceeeE
Confidence 88776666543
No 113
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=57.91 E-value=1.1e+02 Score=25.41 Aligned_cols=136 Identities=15% Similarity=0.031 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCC--ChHHHHHHHHHHHhhcCCCceeEEEeecC----------CC
Q 028240 70 NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKG--TPEYVRSCCEASLRRLDVEYIDLYYQHRV----------DT 137 (211)
Q Consensus 70 ~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~--s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~----------~~ 137 (211)
..+.+.++-+. ...-+++.+|..+...-.+...-++ -.+.-.+-++...+.+.++-.-++=+|-. .+
T Consensus 21 ~~ea~~~F~rA-GGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~p 99 (285)
T COG1831 21 ALEAARRFHRA-GGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSP 99 (285)
T ss_pred HHHHHHHHHHc-CCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccCh
Confidence 56666666554 3456777777765443221100011 12233344555555555543333333411 01
Q ss_pred C---CCHHHHHHHHHHHHHcCcccEEEeCCC-----CH-------HHHHHHhccC-CceE-EeccCCccccCchhhHHHH
Q 028240 138 S---VPIEETIGEMKKLVEEGKIKYIGLSEA-----SP-------DTIRRAHAVH-PITA-VQLEWSLWARDIENEIVPL 200 (211)
Q Consensus 138 ~---~~~~~~~~~l~~l~~~G~ir~iGvs~~-----~~-------~~l~~~~~~~-~~~~-~q~~~~~~~~~~~~~~~~~ 200 (211)
. ..+...++...+++++|++-.||=+.. +. +.+..+++.. ..+| +|++.--.....-.++-++
T Consensus 100 eea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ 179 (285)
T COG1831 100 EEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEM 179 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHH
Confidence 1 113467888899999998888876653 22 2233344432 2332 5654443333323467778
Q ss_pred HHHcCC
Q 028240 201 CRFVRL 206 (211)
Q Consensus 201 ~~~~gi 206 (211)
+++.|+
T Consensus 180 ak~~G~ 185 (285)
T COG1831 180 AKEAGI 185 (285)
T ss_pred HHHhCC
Confidence 888776
No 114
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=57.87 E-value=88 Score=24.33 Aligned_cols=146 Identities=10% Similarity=-0.014 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc----CCCCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
.+.+++.++++.+++.|++..|.- +..+..+++. +.+.++++.--. ...+.++..
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~~-------------~a~~~~~~~ 67 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHVM-------------MSADAMLAG 67 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHHH-------------HHHHHHHHH
Confidence 377899999999999999765532 1233333332 123333331111 123344444
Q ss_pred HHHHHhhcCCC----ceeEEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEeCCCCHHHHHHHhccCCceEEeccCCcc
Q 028240 115 CEASLRRLDVE----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLW 189 (211)
Q Consensus 115 ~~~sL~~Lg~~----~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~ 189 (211)
+......+... .---+++-.+..+..--...-...-|+..|. +.++|. +-+.+.+.+.+...+++++.+.+.+.
T Consensus 68 l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~ 146 (197)
T TIGR02370 68 IKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMT 146 (197)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccc
Confidence 44444433311 1112333333222211122222333444553 445663 44456666666667777777776654
Q ss_pred ccCc-hhhHHHHHHHcCC
Q 028240 190 ARDI-ENEIVPLCRFVRL 206 (211)
Q Consensus 190 ~~~~-~~~~~~~~~~~gi 206 (211)
.... -.++++.+++.|.
T Consensus 147 ~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 147 TTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 4321 2456777777653
No 115
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=57.80 E-value=1.4e+02 Score=26.65 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCC--CCCHHHHHHHHHHHHHc-CcccE---------EEeCCCCHHHHHHH
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEE-GKIKY---------IGLSEASPDTIRRA 173 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~-G~ir~---------iGvs~~~~~~l~~~ 173 (211)
++.+...+ +-+.|.++|++.|++.-=...+. ..--++-|+.++.+++. ..++. +|.+++.-+.+++.
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 34444444 44458888999999830000110 00012357777777665 23332 45666544444433
Q ss_pred hc---cCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 174 HA---VHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 174 ~~---~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
++ ...++++.+..++-+...-...+++++++|..+.
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~ 140 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQ 140 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEE
Confidence 22 1345666665554333223457899999997654
No 116
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=57.58 E-value=88 Score=26.90 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCceeEEEeecCCCCC---CHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCC
Q 028240 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSV---PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~---~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
-+-.+-+.|.++|+++|+.-..-+|.... +.++.++++. +...++..++. .+...++.+++... +.+.+.++
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~~s 143 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-KEVAVFAS 143 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-CEEEEEEe
Confidence 34456666999999999987554553222 2234455543 33335555554 47888998887632 22222211
Q ss_pred c--------cccCc------hhhHHHHHHHcCCeee
Q 028240 188 L--------WARDI------ENEIVPLCRFVRLAVK 209 (211)
Q Consensus 188 ~--------~~~~~------~~~~~~~~~~~gi~v~ 209 (211)
. ++... -.+++++|+++|+.|.
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1 11111 1358889999998874
No 117
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.35 E-value=1.2e+02 Score=25.82 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEee---------cCCCCCCHHHHHHHHHHHHHc-CcccEEEeCC---CCHHHHH
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQH---------RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPDTIR 171 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh---------~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~---~~~~~l~ 171 (211)
.++.+.+.+-+ +.|.+.|+++|.+-..- .+. ..+ -++.++.+.+. ...+...+.. .+.+.++
T Consensus 21 ~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 21 QYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred ccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCC-CCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 45566665544 45899999999985321 111 112 34444444322 3355444332 3566777
Q ss_pred HHhccCCceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 172 RAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 172 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
.+.+. .++.+.+.++.-+...-.+.+++++++|..|..
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEE
Confidence 76654 344544444433322345688889999987653
No 118
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=57.34 E-value=55 Score=28.72 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHcCCCe-EeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCC---CcccccCCChHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITF-FDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG---FTSVIVKGTPEYVRSC 114 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~---~~~~~~~~s~~~i~~~ 114 (211)
.+.+.-.+=++.|++.|-.. .|-+ ..|+ -.++=-..|+.. .+-|.|= .. +.. ......+.+++.+.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tGgd--l~~iR~~il~~s---~vpvGTV-Pi-Yqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLS-TGGD--LDEIRKAILDAV---PVPVGTV-PI-YQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCC--HHHHHHHHHHcC---CCCccCc-cH-HHHHHHhcCChhhCCHHHHHHH
Confidence 34455556689999999864 5544 2332 333333333321 1111110 00 000 0011245678888888
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
+++..+ +-+|++.+|.- -..+.++.++++|++ .|+-+
T Consensus 146 ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R~--~giVS 182 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGRI--TGIVS 182 (423)
T ss_pred HHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCCc--cCeec
Confidence 887765 34688999985 367889999999854 45443
No 119
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=57.32 E-value=96 Score=26.65 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEee-cCCCC------------CCHH---H-HHHHHHHHHHcCcccEEEeCCCC
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTS------------VPIE---E-TIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh-~~~~~------------~~~~---~-~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
+.+.+.+.++.. .+++.+++.+|.+. .|... .+.+ + .-.+.+.|.+.|. ..+++|+|.
T Consensus 165 t~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 165 TIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 677888887764 55888888888553 22100 0111 2 2335667777786 467888885
No 120
>PRK05414 urocanate hydratase; Provisional
Probab=56.62 E-value=38 Score=30.60 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=76.6
Q ss_pred HHHHHHcCCCeEe--CCCCc---C-----CCcHHHHHHHHHhcC---CCCcEEEEeccccccCCCcc---------cccC
Q 028240 48 IKHAFSKGITFFD--TADKY---G-----PYTNEILLGKALKEL---PRENIQVATKFGFVELGFTS---------VIVK 105 (211)
Q Consensus 48 l~~A~~~Gi~~~D--tA~~Y---g-----~g~~E~~lG~~l~~~---~r~~~~i~tK~~~~~~~~~~---------~~~~ 105 (211)
++..-+.|+.-+= ||..| | .|.-|.++.-+-+.. -+-++++++-++-.....+- ...+
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 5556667776432 44332 1 244555544443332 24578888887654332210 0011
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccC-C--ceEE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH-P--ITAV 182 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~--~~~~ 182 (211)
.++ .+.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.++++.+.. . +..-
T Consensus 198 vd~-------~ri~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtD 263 (556)
T PRK05414 198 VDE-------SRIDKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTD 263 (556)
T ss_pred ECH-------HHHHHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCc
Confidence 223 3344678888888743 458899999999999999999999998888998887652 3 3334
Q ss_pred eccC
Q 028240 183 QLEW 186 (211)
Q Consensus 183 q~~~ 186 (211)
|...
T Consensus 264 QTSa 267 (556)
T PRK05414 264 QTSA 267 (556)
T ss_pred Cccc
Confidence 5544
No 121
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.53 E-value=92 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEecccc
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGF 94 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~ 94 (211)
.+.+++.++.++..+.|++.++....... ..+.+.+.-++.++--+-..|++..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~--~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPA--ALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcc--HHHHHHHHHHHCCCCEEEEeeccCH
Confidence 47899999999999999999998855543 6667755555566444555666543
No 122
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=56.49 E-value=1.1e+02 Score=25.06 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC---CCcCCC----cHHHHHHHHHhcCCCC-cEEEEeccccccCCCcccccCCChHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTA---DKYGPY----TNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYV 111 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~~Yg~g----~~E~~lG~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~s~~~i 111 (211)
+.++..+..+.+.+.|+..+|.- +....+ ...+.+.+.++.+.+. ++-|..|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 56788889999999999998853 322211 1334555555543221 56688888643 134454
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCC-------------CC---C------HHHHHHHHHHHHHcC--cccEEEeCCC-C
Q 028240 112 RSCCEASLRRLDVEYIDLYYQHRVDT-------------SV---P------IEETIGEMKKLVEEG--KIKYIGLSEA-S 166 (211)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~-------------~~---~------~~~~~~~l~~l~~~G--~ir~iGvs~~-~ 166 (211)
.+.++ .+...|.|.|.+ |+-.. .. . ..-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i~~---~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGLTA---INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEEEE---EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44444 456678655544 42100 00 0 112477788887763 6888888885 6
Q ss_pred HHHHHHHhccCCceEEecc
Q 028240 167 PDTIRRAHAVHPITAVQLE 185 (211)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~~ 185 (211)
++.+.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 78888888754 5666653
No 123
>PRK15108 biotin synthase; Provisional
Probab=56.02 E-value=1.3e+02 Score=25.71 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCc-CC-CcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKY-GP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~-g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
.+.++..+..+.+.+.|++.|-..... +. ...-+.+-+.++.+....+.++.-.+. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 478888888888889999988543221 11 112234555555433222333222221 132322
Q ss_pred HHHhhcCCCceeEEEeecC------CCCCCHHHHHHHHHHHHHcCcccE
Q 028240 117 ASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 159 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir~ 159 (211)
+-|+..|++++.+.+=-.| -....+++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3355667765443221111 112357899999999999997444
No 124
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=55.89 E-value=1e+02 Score=24.55 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHh
Q 028240 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (211)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (211)
.....++++.|.+.|+..+=.+++...........+.++ +=+++....+.. ..++.+.+-++
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~~---~i~Il~GiEi~~-----------~~~~~~~~~~~---- 76 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDLL---GFEIFRGVEIVA-----------SNPSKLRGLVG---- 76 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHhc---CCcEEeeEEEec-----------CCHHHHHHHHH----
Confidence 456779999999999998888777532101011111111 112222222211 13344433333
Q ss_pred hcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCC-------CHHHHHHHhccCCceEEeccCCccccC-
Q 028240 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------SPDTIRRAHAVHPITAVQLEWSLWARD- 192 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q~~~~~~~~~- 192 (211)
+.. ..+|++.+| |.. +.+. +.+.+.+.+--||--.. ....+..+.+.. .++.+.++.+.+.
T Consensus 77 ~~~-~~~d~v~v~-~~~----~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g--v~lEIn~s~~~~~~ 145 (237)
T PRK00912 77 KFR-KKVDVLAVH-GGD----EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN--VAIEFNLRDILKSR 145 (237)
T ss_pred hcc-CcccEEEEe-CCC----HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC--eEEEEEchHhhhhc
Confidence 322 346777888 221 1222 35777888887776532 222233333332 1334444432111
Q ss_pred ---------chhhHHHHHHHcCCeee
Q 028240 193 ---------IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 193 ---------~~~~~~~~~~~~gi~v~ 209 (211)
....++..|++.|+.++
T Consensus 146 ~~~r~~~~~~~~~~~~~~~~~g~pii 171 (237)
T PRK00912 146 GGRRARTLSNFRDNLALARKYDFPLV 171 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 11468999999997764
No 125
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=55.80 E-value=15 Score=28.69 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEEeccCCc
Q 028240 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSL 188 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~ 188 (211)
.+..+|.||+=+.+. |.... .-..+.+.+|.+.-..+.+||.. -+.+.+.+.++...++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R--~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPR--YVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTT--B--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCC--ccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 346789998888643 43211 12234444554444444888875 577888898888999999987664
No 126
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=55.38 E-value=1.4e+02 Score=25.76 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEeCCCCHHHHHHHhccCCceEEec
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (211)
++.+... .+-+.|.++|+++|++- .|... +.-++.++.+.+.+ ..+..+++..+.+.++.+.+.. ++.+.+
T Consensus 20 ~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~i 91 (365)
T TIGR02660 20 FTAAEKL-AIARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVHI 91 (365)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEEE
Confidence 4555544 45555999999999985 33221 23467777777664 3777888888888888887753 233333
Q ss_pred cCCccc--------cCch------hhHHHHHHHcCCeee
Q 028240 185 EWSLWA--------RDIE------NEIVPLCRFVRLAVK 209 (211)
Q Consensus 185 ~~~~~~--------~~~~------~~~~~~~~~~gi~v~ 209 (211)
....-+ ...+ .+.+++++++|+.|.
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 332211 1111 257888999987653
No 127
>PLN02389 biotin synthase
Probab=55.12 E-value=1.4e+02 Score=25.92 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC-cCCCc---HHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADK-YGPYT---NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~-Yg~g~---~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
.+.++..+.++.+.+.|++.|-.... .+.+. .-+.+-+.++.+....+.|+...+.. +.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~E----- 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EKE----- 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CHH-----
Confidence 57899999999999999998754211 11111 11244455555433344455433321 222
Q ss_pred HHHHHhhcCCCceeEEEeec-C------CCCCCHHHHHHHHHHHHHcCc
Q 028240 115 CEASLRRLDVEYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 156 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 156 (211)
.-+.|+.-|++++..-+ .. + -....+++.+++++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 22334455776644322 21 1 112357889999999999986
No 128
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=54.91 E-value=1.3e+02 Score=25.42 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=54.9
Q ss_pred CCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecC--CCC--CC--HHHHHHHHHHHHHcCc
Q 028240 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV--DTS--VP--IEETIGEMKKLVEEGK 156 (211)
Q Consensus 83 r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~--~~~--~~--~~~~~~~l~~l~~~G~ 156 (211)
.+++.|..|+.+...... ..+.+... .+-+.|+..|++++++ |.. ... .+ ....++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~~----g~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVEG----GWDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 457788889875322111 12333332 3334566778776664 321 100 01 1123566677777766
Q ss_pred ccEEEeCCC-CHHHHHHHhccCCceEEec
Q 028240 157 IKYIGLSEA-SPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 157 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 184 (211)
+.=++..+. +++.++++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 777887775 7889999998877777655
No 129
>TIGR00035 asp_race aspartate racemase.
Probab=54.89 E-value=1.1e+02 Score=24.36 Aligned_cols=62 Identities=19% Similarity=0.129 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC------------CHHHHHHHHHHHHHcCcccEEEeCCCCHHH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------------PIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~------------~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 169 (211)
+.+..++-++.+-.+.+.++++.+.+++|+-.. ....+.+.++.|.+.| +..|-+.-+++..
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 566677777777788999999999999985321 1235677777777765 7888887766554
No 130
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.79 E-value=40 Score=30.37 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=72.0
Q ss_pred HHHHHHcCCCeEe--CCCC--c-C-----CCcHHHHHHHHHhcC---CCCcEEEEeccccccCCCcc---------cccC
Q 028240 48 IKHAFSKGITFFD--TADK--Y-G-----PYTNEILLGKALKEL---PRENIQVATKFGFVELGFTS---------VIVK 105 (211)
Q Consensus 48 l~~A~~~Gi~~~D--tA~~--Y-g-----~g~~E~~lG~~l~~~---~r~~~~i~tK~~~~~~~~~~---------~~~~ 105 (211)
++..-+.|+.-+= ||.. | | .|.-|.++.-+-+.. -+-++++++-++-.....+- ...+
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 5566677777432 4433 2 1 244555544333322 24567888777644332210 0011
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 176 (211)
.+++ +.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.++++.+.
T Consensus 189 vd~~-------ri~kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 189 VDES-------RIDKRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred ECHH-------HHHHHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 2233 334677888888642 45789999999999999999999999888999988774
No 131
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.99 E-value=1e+02 Score=25.56 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCC---cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHH
Q 028240 35 YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPY---TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (211)
Q Consensus 35 ~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i 111 (211)
+...++++...++++.+.+.|+..|=-++..|.. ...+.+....+..+. +-|.... +++.+ -
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~----Hn~~G-------l-- 212 (287)
T PRK05692 148 YEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA--ERLAGHF----HDTYG-------Q-- 212 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC--CeEEEEe----cCCCC-------c--
Confidence 3345688999999999999999988555544532 233334333333332 2222222 11111 1
Q ss_pred HHHHHHHHhh--cCCCceeEEEeec--------CCCCCCHHHHHHHHHH
Q 028240 112 RSCCEASLRR--LDVEYIDLYYQHR--------VDTSVPIEETIGEMKK 150 (211)
Q Consensus 112 ~~~~~~sL~~--Lg~~~iDl~~lh~--------~~~~~~~~~~~~~l~~ 150 (211)
++..+|.. .|++++|.=+.-- ..-+.+.++++..|+.
T Consensus 213 --a~AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~ 259 (287)
T PRK05692 213 --ALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHG 259 (287)
T ss_pred --HHHHHHHHHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHh
Confidence 33334433 4889998866532 1223456677776753
No 132
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=53.91 E-value=1e+02 Score=26.54 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCC---CcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHH
Q 028240 34 CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGP---YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEY 110 (211)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~ 110 (211)
.+....+.+...++++.+.+.|.+.|=-++-.|- ....+++....+..+... |...+ +++.
T Consensus 189 p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~--i~~H~----Hnd~---------- 252 (347)
T PLN02746 189 PIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDK--LAVHF----HDTY---------- 252 (347)
T ss_pred CccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCe--EEEEE----CCCC----------
Confidence 3445678899999999999999998855554443 223334433333232112 22222 1111
Q ss_pred HHHHHHHHHhhc--CCCceeEEEee---cC-----CCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHh
Q 028240 111 VRSCCEASLRRL--DVEYIDLYYQH---RV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAH 174 (211)
Q Consensus 111 i~~~~~~sL~~L--g~~~iDl~~lh---~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~ 174 (211)
--++-.+|..+ |.+++|.-+.- +| .-+.+.++++-.|+.+ |+.+ .+.+.+.++.
T Consensus 253 -GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~---------G~~tgiDl~~L~~~s 317 (347)
T PLN02746 253 -GQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGL---------GVSTNVDLGKLMAAG 317 (347)
T ss_pred -ChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhc---------CCCCCCCHHHHHHHH
Confidence 11344444444 78888876653 11 1234566766666432 4443 5666665543
No 133
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=53.90 E-value=80 Score=23.58 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--cCcccEEEeCCCCHHHHHHHhccCCceEE
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 182 (211)
..+.+.|.+.+++.-+.+|++ ++++|-.. --+.++.+.+..+ +|.|--=|--+|..-.+.+++.....-++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSNH------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEE
Confidence 347889999999999999974 77776322 2367777777654 35555556667777788888888777788
Q ss_pred eccCCcccc
Q 028240 183 QLEWSLWAR 191 (211)
Q Consensus 183 q~~~~~~~~ 191 (211)
.++.+-...
T Consensus 98 EVHiSNi~a 106 (146)
T PRK13015 98 EVHISNVHA 106 (146)
T ss_pred EEEcCCccc
Confidence 888875543
No 134
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=53.85 E-value=51 Score=26.46 Aligned_cols=107 Identities=24% Similarity=0.205 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHh--cC-------CCCcEEEEeccccccCCCcc------cc
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALK--EL-------PRENIQVATKFGFVELGFTS------VI 103 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~--~~-------~r~~~~i~tK~~~~~~~~~~------~~ 103 (211)
++.+...+++++|-..|.+|+|.|..- +++..+.. .+ ..+.+.-+.|.|..-..-++ -.
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAadp------~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAADP------ELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecCCH------HHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 578999999999999999999999642 23332221 11 11222222222211000000 01
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 155 (211)
..|+.+.+.+-.++..+.|-- +.| ---.....+++++.+-.++|++.|
T Consensus 98 r~f~a~eVL~Lt~~tR~LLP~--~~L--sVTVPHiL~ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 98 RRFSAEEVLALTRETRSLLPD--ITL--SVTVPHILPLDQQVQLAEDLVKAG 145 (242)
T ss_pred CeecHHHHHHHHHHHHHhCCC--Cce--EEecCccccHHHHHHHHHHHHHhC
Confidence 245677777767776666631 111 112223355777777777777765
No 135
>PLN00191 enolase
Probab=53.62 E-value=1.7e+02 Score=26.26 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC--CCCHHHHHHHhccCCceEEe
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~q 183 (211)
.+++.+.+-+...++++ ++.++..|-+. +-|+.+.+|.+...+.-+|=- ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSDY-----PIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhcC-----CcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 35666555555554433 45677777543 347777778888777766622 25688999999888888888
Q ss_pred ccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 184 LEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
+..|-.-. ....++.+.|+++|+.++
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~ 392 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVM 392 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEE
Confidence 88874322 123568999999999875
No 136
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=53.58 E-value=69 Score=23.73 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--cCcccEEEeCCCCHHHHHHHhccCCceEE
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 182 (211)
..+.+.+.+.+++.-+.+|++ ++++|-.. -.+.++++.+..+ +|.|--=|--+|..-.+.+++....+-++
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~V 95 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVI 95 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEE
Confidence 347899999999999999974 77777322 2367777777754 35555556666777788888888777788
Q ss_pred eccCCcccc
Q 028240 183 QLEWSLWAR 191 (211)
Q Consensus 183 q~~~~~~~~ 191 (211)
.++.+-.+.
T Consensus 96 EVHiSNi~a 104 (140)
T cd00466 96 EVHISNIHA 104 (140)
T ss_pred EEecCCccc
Confidence 888886544
No 137
>PRK00208 thiG thiazole synthase; Reviewed
Probab=53.48 E-value=1.2e+02 Score=24.73 Aligned_cols=104 Identities=16% Similarity=0.056 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEe
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 183 (211)
+.+.++..+..+-..+-+++++|=|=.+..+... .+..+++++.+.|.++|.+- +=+++-++....++.+. .++++.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeC
Confidence 5578888888888888889998888887766544 45789999999999999854 33666777666666554 333332
Q ss_pred ccCCcccc--Cc-hhhHHHHHHH-cCCeeee
Q 028240 184 LEWSLWAR--DI-ENEIVPLCRF-VRLAVKS 210 (211)
Q Consensus 184 ~~~~~~~~--~~-~~~~~~~~~~-~gi~v~a 210 (211)
.--++.-. +. ..+.++..++ .++.|++
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 21111111 11 2345666665 4777764
No 138
>PRK05406 LamB/YcsF family protein; Provisional
Probab=52.81 E-value=64 Score=26.34 Aligned_cols=81 Identities=14% Similarity=0.306 Sum_probs=53.6
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCC-Cccc
Q 028240 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSV 102 (211)
Q Consensus 25 g~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~-~~~~ 102 (211)
+||.|.+| ++++...++..|- ..|+ +.| ....+-++++--....+-|...-+.+... -++-
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 77888764 4577777777774 4455 666 55566666654445677777777655433 2334
Q ss_pred ccCCChHHHHHHHHHHHhhc
Q 028240 103 IVKGTPEYVRSCCEASLRRL 122 (211)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~L 122 (211)
..+.+++.++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45678999998887777766
No 139
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=52.73 E-value=1.4e+02 Score=25.06 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC---------CcCCCc----HHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccC
Q 028240 40 SEEDGISIIKHAFSKGITFFDTAD---------KYGPYT----NEILLGKALKELP-RENIQVATKFGFVELGFTSVIVK 105 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~g~----~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~ 105 (211)
++++..+..+.+.+.|+..+|.-- .|+ |. .-+.+.+.++.+. .-++-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-------
Confidence 678888888899999999888521 222 21 2245555555431 1235677776432110
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~ 182 (211)
+...+ ..+-+.|+..|++. +.+|........ ...|+.+.++++.=.+.-|+... .+++.++++++....+.+
T Consensus 145 -~~~~~-~~~a~~l~~~G~d~---i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 145 -AHINA-VEAARIAEDAGAQA---VTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred -CcchH-HHHHHHHHHhCCCE---EEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 11111 23444566778654 555754322111 23578888888876677777776 578888888865555555
Q ss_pred ec
Q 028240 183 QL 184 (211)
Q Consensus 183 q~ 184 (211)
++
T Consensus 220 mi 221 (319)
T TIGR00737 220 MI 221 (319)
T ss_pred EE
Confidence 54
No 140
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=52.00 E-value=76 Score=27.97 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCCe-EeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEecccc----ccCCCcccccCCChHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITF-FDTADKYGPYTNEILLGKALKELPRENIQVATKFGF----VELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~----~~~~~~~~~~~~s~~~i~~ 113 (211)
.+.+.-.+=++.|++.|-.. .|-+- .|+ -.++--..|+.. .+-|.|=--. ..........+.+++.+.+
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-ggd--l~~iR~~il~~s---~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GGD--LDEIRRAIIEAS---PVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCC--HHHHHHHHHHcC---CCCCcChhHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 34555556689999999874 55442 232 333333333321 1111110000 0000001223567888888
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
.+++..+ +-+|++.+|.- -..+.++.++++|++ .|+-+
T Consensus 148 ~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R~--~giVS 185 (431)
T PRK13352 148 VIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGRI--MGIVS 185 (431)
T ss_pred HHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCCc--cCeec
Confidence 8887765 34688999985 257889999998854 45443
No 141
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=51.64 E-value=1.5e+02 Score=25.22 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcC-CCceeEEEeecCCC-------------CCCHHHHHHHH
Q 028240 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVDT-------------SVPIEETIGEM 148 (211)
Q Consensus 83 r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg-~~~iDl~~lh~~~~-------------~~~~~~~~~~l 148 (211)
..++.|..|+++.....+ ..+.+... .+-+.|+..| +|++++ |.... .......|+..
T Consensus 206 g~~~~v~iRl~~~~~~~~----G~~~~e~~-~~~~~l~~~G~vd~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 206 GPDFIVGIRISGDEDTEG----GLSPDEAL-EIAARLAAEGLIDYVNV---SAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred CCCCeEEEEeehhhccCC----CCCHHHHH-HHHHHHHhcCCCCEEEe---CCCCCCcccccccccCCCCCCcchhHHHH
Confidence 457888899876432211 12343332 3444556666 566554 32110 01111236666
Q ss_pred HHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEEec
Q 028240 149 KKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 149 ~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 184 (211)
..+++.=.+--+++.+ ++++.++++++....+.+.+
T Consensus 278 ~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 278 ARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 6677665677777776 48899999998766665543
No 142
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=51.57 E-value=63 Score=24.45 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEec-cccccCCCcccccCCChHHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATK-FGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK-~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
..++...-++++|-+.||.+|=.|..||. +-..+-+.+.. .=++++.|. .+.... ....+.+.+++
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg--~lkvVvVthh~Gf~e~---------g~~e~~~E~~~ 77 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG--DLKVVVVTHHAGFEEK---------GTQEMDEEVRK 77 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc--CceEEEEEeecccccC---------CceecCHHHHH
Confidence 34566677788888999999999999985 33333333332 123554444 333322 34556777888
Q ss_pred HHhhcCCCceeEEEeecCCC-----------CCCHHHHHHHHHHHHHcCcccEEEe
Q 028240 118 SLRRLDVEYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEEGKIKYIGL 162 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~G~ir~iGv 162 (211)
-|+..|.+- +-+-|.... ..+.+-+.++|+ +.-+|.=-++=+
T Consensus 78 ~L~erGa~v--~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcvEI 130 (186)
T COG1751 78 ELKERGAKV--LTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCVEI 130 (186)
T ss_pred HHHHcCcee--eeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEEEE
Confidence 888888542 123343321 123455667777 777776444443
No 143
>COG0218 Predicted GTPase [General function prediction only]
Probab=50.53 E-value=1.2e+02 Score=23.86 Aligned_cols=101 Identities=16% Similarity=-0.001 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHc------CCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 41 EEDGISIIKHAFSK------GITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 41 ~~~~~~~l~~A~~~------Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
.+...+++...++. .+-.+|.-..--. .+..+=++|......=+++.||..- .+.....+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~ 156 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHH
Confidence 35556666666643 4446776554433 6778888998877778899999863 356677778
Q ss_pred HHHHHhhcCCCceeE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 028240 115 CEASLRRLDVEYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 154 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (211)
+....+.|+.+..|- +++........+++.+..+.++...
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888888888776665 4555555556688888888777653
No 144
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=50.27 E-value=1.6e+02 Score=24.91 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCcCCCcHHHHH---HHHHhcCC-CCcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPYTNEILL---GKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~~E~~l---G~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
.+.++..++++...+. ||+.+--+..-.-=.+...+ -+.+++++ -+.+.|.|+.... .+..+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit~ 187 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVTP 187 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcCH
Confidence 3557777888876644 88755322111100012222 23334333 2346677775422 2334445
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEE------EeCCCCHHHHHHHhc
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPDTIRRAHA 175 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~ 175 (211)
.+-+.|++.|.. ..+.+|...+..-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 188 ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 188 ALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 555566667742 346778754443357899999999999963211 33 567777766543
No 145
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.08 E-value=1.7e+02 Score=25.28 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=48.3
Q ss_pred CCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEe--ecCCCCCCHHHHHHHHHHHHHcCcccEE
Q 028240 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQ--HRVDTSVPIEETIGEMKKLVEEGKIKYI 160 (211)
Q Consensus 83 r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~l--h~~~~~~~~~~~~~~l~~l~~~G~ir~i 160 (211)
.+++.|..|+......+.......+++...+ +-+.|+..|+|+|++-.- +.|.... ..+.....+++.-.+.-+
T Consensus 209 G~d~~v~vRis~~~~~~~~~~~g~~~~e~~~-~~~~l~~~gvd~i~vs~g~~~~~~~~~---~~~~~~~~~k~~~~~pv~ 284 (361)
T cd04747 209 GPDFPIILRFSQWKQQDYTARLADTPDELEA-LLAPLVDAGVDIFHCSTRRFWEPEFEG---SELNLAGWTKKLTGLPTI 284 (361)
T ss_pred CCCCeEEEEECcccccccccCCCCCHHHHHH-HHHHHHHcCCCEEEecCCCccCCCcCc---cchhHHHHHHHHcCCCEE
Confidence 4567788888742111100001134554433 333466778888776331 1121111 112233334444445555
Q ss_pred EeCC-------------------CCHHHHHHHhccCCceEE
Q 028240 161 GLSE-------------------ASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 161 Gvs~-------------------~~~~~l~~~~~~~~~~~~ 182 (211)
++.. .+++.++++++....+.+
T Consensus 285 ~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 285 TVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLV 325 (361)
T ss_pred EECCcccccccccccccccccccCCHHHHHHHHHCCCCCee
Confidence 5554 488999999987665555
No 146
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=49.60 E-value=19 Score=24.96 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 163 SEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 163 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
|.++...+.++++...++++|+.....-- ..-..+.+.|+++|+.+.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~ 50 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVM 50 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEE
Confidence 45778889999988888999987654311 113468999999999875
No 147
>PRK12569 hypothetical protein; Provisional
Probab=49.40 E-value=82 Score=25.70 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=55.3
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCC-Cccc
Q 028240 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSV 102 (211)
Q Consensus 25 g~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~-~~~~ 102 (211)
+||.|.+|. ..+++...++..|- ..|+ +.| ....+-++++--....+-|...-+.+... -++-
T Consensus 14 sfG~~~~g~-----~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr 78 (245)
T PRK12569 14 GFGPWRIGD-----GVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRR 78 (245)
T ss_pred CCCCcCCCC-----ccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCC
Confidence 778887752 12577778887775 4455 667 56677777765445677777777655433 2333
Q ss_pred ccCCChHHHHHHHHHHHhhcC
Q 028240 103 IVKGTPEYVRSCCEASLRRLD 123 (211)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~Lg 123 (211)
..+.+++.++..+...+..|.
T Consensus 79 ~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 79 HINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 456789999988877776663
No 148
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=49.30 E-value=46 Score=30.09 Aligned_cols=126 Identities=19% Similarity=0.165 Sum_probs=67.2
Q ss_pred HHHHHHcCCCeEe--CCCCc--CC------CcHHHHHHHHHhc---CCCCcEEEEeccccccCCCcc---------cccC
Q 028240 48 IKHAFSKGITFFD--TADKY--GP------YTNEILLGKALKE---LPRENIQVATKFGFVELGFTS---------VIVK 105 (211)
Q Consensus 48 l~~A~~~Gi~~~D--tA~~Y--g~------g~~E~~lG~~l~~---~~r~~~~i~tK~~~~~~~~~~---------~~~~ 105 (211)
.+...+.|++-+= ||..| -. |.-|.++.-+-+. -.+-++++++-++-.....+- ...+
T Consensus 108 f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vE 187 (546)
T PF01175_consen 108 FERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVE 187 (546)
T ss_dssp HHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEE
T ss_pred HHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEEE
Confidence 5666777877443 44333 11 3334333333221 235678999888754322100 0012
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccC---CceEE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH---PITAV 182 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~ 182 (211)
.+++ +.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.++++.+.. .+..-
T Consensus 188 vd~~-------ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tD 253 (546)
T PF01175_consen 188 VDPS-------RIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTD 253 (546)
T ss_dssp S-HH-------HHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE--
T ss_pred ECHH-------HHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccC
Confidence 2333 344677778888754 458899999999999999999999998888888887652 34444
Q ss_pred eccCC
Q 028240 183 QLEWS 187 (211)
Q Consensus 183 q~~~~ 187 (211)
|...+
T Consensus 254 QTS~H 258 (546)
T PF01175_consen 254 QTSAH 258 (546)
T ss_dssp -SSTT
T ss_pred CCccc
Confidence 66553
No 149
>PRK00077 eno enolase; Provisional
Probab=49.30 E-value=1.9e+02 Score=25.56 Aligned_cols=95 Identities=8% Similarity=0.014 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEeCC--CCHHHHHHHhccCCceE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 181 (211)
++++...+.+.+.++.+ +++++..|-+.. -|+.+.+|.++- .+.-.|=-. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 35666666666666554 467777775433 356666666653 444333222 36899999998888889
Q ss_pred EeccCCccccC-chhhHHHHHHHcCCeee
Q 028240 182 VQLEWSLWARD-IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 182 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~ 209 (211)
+|+..+-.-.- ...++...|+.+|+.++
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~ 360 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAV 360 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEE
Confidence 99988753221 23568999999999754
No 150
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=48.77 E-value=45 Score=26.47 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
++.+++..+.+...+. |+-|...++-|= +-+...+..+..+. .++++... +.+.+. +.+
T Consensus 10 t~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~----i~~ 69 (208)
T COG0135 10 TRLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEE----ILE 69 (208)
T ss_pred CCHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHH----HHH
Confidence 3567766665553333 555666677776 45555555554432 11222211 113333 344
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCC
Q 028240 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
.++.++ +|++|||...+. +.++.|.....-..++++.++.-.
T Consensus 70 i~~~~~---ld~VQlHG~e~~----~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 70 IAEELG---LDAVQLHGDEDP----EYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHHhcC---CCEEEECCCCCH----HHHHHHHhhcCCceEEEEEeCCcc
Confidence 445555 688999998532 233333333345689999998653
No 151
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=48.20 E-value=1.7e+02 Score=24.86 Aligned_cols=94 Identities=11% Similarity=-0.014 Sum_probs=52.5
Q ss_pred EEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCC
Q 028240 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 87 ~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
+|..|+.......+. ....+.+... .+-+.|+..|+|++++-.-..... . ....++....+++.=.+--+++.+++
T Consensus 220 ~v~vRis~~~~~~~~-~~~~~~ee~~-~~~~~l~~~g~d~i~vs~g~~~~~-~-~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFNDM-GDSDPEATFS-YLAKELNKRGLAYLHLVEPRVAGN-P-EDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCCC-CCCCCHHHHH-HHHHHHHHcCCcEEEEecCCCCCc-c-cccchHHHHHHHHHcCCCEEEECCCC
Confidence 488888754321110 1122334333 355566777887777622111111 1 12244555556665567788888888
Q ss_pred HHHHHHHhccCCceEEec
Q 028240 167 PDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~ 184 (211)
++..+++++....+.+.+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 889999998776666543
No 152
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=47.95 E-value=1.8e+02 Score=24.84 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC---------CCcCC--CcHHHHHHHHHhcCCCCcE
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTA---------DKYGP--YTNEILLGKALKELPRENI 86 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA---------~~Yg~--g~~E~~lG~~l~~~~r~~~ 86 (211)
.++.++..++++..-++|+..++.+ ..||. -..++.+.+..+..++.++
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~ 79 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKV 79 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEE
Confidence 4678999999999999999999994 22331 1244556555555444333
No 153
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=47.94 E-value=1.6e+02 Score=24.92 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
..-.++++.+-+.|| .+|.|.. +++.+=.++.- .+..+|+|........ +..+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al~------~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARALV------DHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhcc------CCCCCCCHHHHHHHHhc
Confidence 345799999999999 6899876 56666666663 4556777776543221 11233344556666666
Q ss_pred cCCCceeEEEeec---C--CCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 122 LDVEYIDLYYQHR---V--DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 122 Lg~~~iDl~~lh~---~--~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
=|+ |.+..+-. + .+..++++..+.+..+++.+=++++|+.+
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 554 33333221 1 23457899999999999999999999986
No 154
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=47.84 E-value=30 Score=24.44 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcC
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYG 66 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 66 (211)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4678889999999999999999999985
No 155
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=47.49 E-value=37 Score=27.38 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc----CcccEEEeCCC--CHHHHHHHhccCCce
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE----GKIKYIGLSEA--SPDTIRRAHAVHPIT 180 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvs~~--~~~~l~~~~~~~~~~ 180 (211)
+.+.+.+-+.+.-+.-.- .+ +.+..|-+..+.++++++|..|++. |.--.|=.-.| +.+.+.++.....-+
T Consensus 87 d~~~~adYl~~l~~aA~P--~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~d 163 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAP--FK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAAD 163 (248)
T ss_dssp -HHHHHHHHHHHHHHHTT--S--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SS
T ss_pred CHHHHHHHHHHHHHhcCC--Ce-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcC
Confidence 566665555444444332 12 5667776666677777777776643 43334444444 568888888887788
Q ss_pred EEeccCC---ccccCchhhHHHHHHHcCCee
Q 028240 181 AVQLEWS---LWARDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 181 ~~q~~~~---~~~~~~~~~~~~~~~~~gi~v 208 (211)
.+|+.-= -.+. .-+.+-+|+++|++.
T Consensus 164 mVQIKtPDLGgi~n--tieAvlyCk~~gvga 192 (248)
T PF07476_consen 164 MVQIKTPDLGGINN--TIEAVLYCKEHGVGA 192 (248)
T ss_dssp EEEE-GGGGSSTHH--HHHHHHHHHHTT-EE
T ss_pred EEEecCCCccchhh--HHHHHHHHHhcCCce
Confidence 8888432 1222 235678999999974
No 156
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.98 E-value=43 Score=30.75 Aligned_cols=57 Identities=23% Similarity=0.161 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHhc-CCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhc-CCCceeEEEeecCCCCCC
Q 028240 68 YTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL-DVEYIDLYYQHRVDTSVP 140 (211)
Q Consensus 68 g~~E~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L-g~~~iDl~~lh~~~~~~~ 140 (211)
|.+-+.++++|.+ ++|+++.|..-..- + ++-+-.||+|| |+.|+.-+.+-|-.+..+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTYE-------------R---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P 690 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTYE-------------R---EAVLMGSLERLHGLPYLNKVVVVWNSPKDP 690 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEeh-------------H---HHHHHHHHHHhhCCcccceEEEEeCCCCCC
Confidence 4477888889875 68888877654321 2 23567788999 799999988877654433
No 157
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=46.95 E-value=2.2e+02 Score=25.64 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEeCC----C--CHHHHHHHhccCC
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPDTIRRAHAVHP 178 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~~ 178 (211)
.+++.+.+.++...++.|+..+ .+...+...+.+.+.+-++.+++.| .--.++.++ . +.+.+..+.+. .
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a-G 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA-G 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh-C
Confidence 4788899999998888887654 3333333344556677778888887 434455432 1 33344433332 2
Q ss_pred ceEEeccCC--------ccccC----chhhHHHHHHHcCCeee
Q 028240 179 ITAVQLEWS--------LWARD----IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 179 ~~~~q~~~~--------~~~~~----~~~~~~~~~~~~gi~v~ 209 (211)
+..+++-.- .+.+. ...+.++.|+++||.+.
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~ 340 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSE 340 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEE
Confidence 222222111 11111 12357888999998764
No 158
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.94 E-value=1.8e+02 Score=24.74 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEe--------e-cCCCCCCHHHHHHHHHHHHHc-CcccEEEeCC---CCHHHHH
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQ--------H-RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPDTIR 171 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~l--------h-~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~---~~~~~l~ 171 (211)
.++.+.+.+ +-+.|.+.|+++|.+-.. . .+.. .+ .++.++++.+. ...+...+.. .+.+.++
T Consensus 20 ~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 20 QFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HT---DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred cCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CC---hHHHHHHHHHhCCCCEEEEEeccCccCHHHHH
Confidence 445555554 445588889999988521 1 1111 12 23333333322 2233333332 3566777
Q ss_pred HHhccCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 172 RAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 172 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.+.+. .++.+.+.++.-+-..-.+.++++++.|..|.
T Consensus 95 ~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~ 131 (333)
T TIGR03217 95 AAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTV 131 (333)
T ss_pred HHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEE
Confidence 76664 34455544443332233567888888887764
No 159
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.65 E-value=1.8e+02 Score=24.74 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (211)
.++.++..++++...++|+..++.+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEee
Confidence 4678999999999999999999995
No 160
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=46.52 E-value=1.8e+02 Score=24.49 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc-CCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (211)
++++..+.+....+.|++.|=.-- +. ..+...=+++++ .+.-++.|--.. .++.+... . -+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~~~~~l~vDaN~------------~~~~~~a~-~-~~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRFPQIPLVIDANE------------SYDLQDFP-R-LKE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhCCCCcEEEECCC------------CCCHHHHH-H-HHH
Confidence 456667777888899999863221 11 123233344444 322123222221 12444432 1 233
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-Cchhh
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENE 196 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ 196 (211)
|+. .++.++..|-+ .+-++.+.+|++.-.+. +.|=|.++...+.++++...++++|+..+..-. ..-..
T Consensus 195 l~~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 195 LDR-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred Hhh-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 333 34556666643 23467788888775554 667777899999999998889999988775321 11247
Q ss_pred HHHHHHHcCCeee
Q 028240 197 IVPLCRFVRLAVK 209 (211)
Q Consensus 197 ~~~~~~~~gi~v~ 209 (211)
+...|+.+|+.++
T Consensus 266 ~~~~A~~~gi~~~ 278 (324)
T TIGR01928 266 AIETCREHGAKVW 278 (324)
T ss_pred HHHHHHHcCCeEE
Confidence 8999999999885
No 161
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=46.07 E-value=1.1e+02 Score=22.82 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--cCcccEEEeCCCCHHHHHHHhccCCceEE
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 182 (211)
..+.+.+.+.+++.-+.+|++ ++++|-.. -.+.++.+.+..+ +|.|--=|--++..-.+.+++....+-++
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~-v~~~QSN~------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~v 95 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE-LEFFQSNS------EGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVV 95 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEE
Confidence 347899999999999999974 77776322 2367777777644 34544446566777778888887777788
Q ss_pred eccCCcccc
Q 028240 183 QLEWSLWAR 191 (211)
Q Consensus 183 q~~~~~~~~ 191 (211)
.++.|-...
T Consensus 96 EVHiSNi~a 104 (141)
T TIGR01088 96 EVHLSNVHA 104 (141)
T ss_pred EEEcCCccc
Confidence 888876544
No 162
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=45.88 E-value=1.7e+02 Score=24.30 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEe-ecCCCC-CCHH-H---HHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCce
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-VPIE-E---TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT 180 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~l-h~~~~~-~~~~-~---~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 180 (211)
+.+.+.+.+++.+ .-|.+-||+=-- .+|... .+.+ + +...++.+++.-.+ -|.+-+++++.++++++.+.--
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4455555544443 447888888522 224322 2222 3 55566677654222 4889999999999999875322
Q ss_pred EEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 181 AVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 181 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+| ..+-+. ++++++.|+++|..++-
T Consensus 114 IN--DI~g~~---d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 114 IN--DIRSLS---EPGALEAAAETGLPVCL 138 (282)
T ss_pred EE--ECCCCC---CHHHHHHHHHcCCCEEE
Confidence 22 222222 34678889999888864
No 163
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=45.33 E-value=65 Score=22.57 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=12.0
Q ss_pred hhHHHHHHHcCCeeeeC
Q 028240 195 NEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~a~ 211 (211)
.++.++++++||+|..|
T Consensus 69 ~~~~~~l~~~gi~vE~m 85 (109)
T cd05560 69 PALLAPLLARGIGVEVM 85 (109)
T ss_pred HHHHHHHHHcCCeEEEE
Confidence 46777788888777653
No 164
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.96 E-value=43 Score=27.25 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCCcccccceecccc---CCCCCCCCCCHHHHHHHHHHHH----HcCCCeEeCCC--CcCCCcHHHHHHHHHhc------
Q 028240 16 TQGLEVSKLGYGCMS---LSGCYNSPLSEEDGISIIKHAF----SKGITFFDTAD--KYGPYTNEILLGKALKE------ 80 (211)
Q Consensus 16 ~~g~~vs~lg~G~~~---~~~~~~~~~~~~~~~~~l~~A~----~~Gi~~~DtA~--~Yg~g~~E~~lG~~l~~------ 80 (211)
.+|+.+|.+||..-+ ||+. .+...+++..+++.|+ +.|||.|--|. .|=--++|+...+++.+
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 578999999998763 3331 1223456666655554 78999999884 33222244444444433
Q ss_pred -CCCCcEEEEecc
Q 028240 81 -LPRENIQVATKF 92 (211)
Q Consensus 81 -~~r~~~~i~tK~ 92 (211)
..+.++.++..+
T Consensus 143 lA~~aqV~lAvEi 155 (287)
T COG3623 143 LAARAQVMLAVEI 155 (287)
T ss_pred HHHhhccEEEeee
Confidence 235566665544
No 165
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=44.96 E-value=1.3e+02 Score=29.29 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHhhcCCC--------------------------ceeEEEeecCCCCCCH---HHHHHHHHHHHHcCcc
Q 028240 107 TPEYVRSCCEASLRRLDVE--------------------------YIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKI 157 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~--------------------------~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i 157 (211)
.+..+.+.++..|+.++.. ...++++..|....++ ...|+.+.++++.|+
T Consensus 671 ~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~- 749 (885)
T KOG0059|consen 671 PRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK- 749 (885)
T ss_pred ChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-
Confidence 4567888888888877643 4677888888766554 479999999999999
Q ss_pred cEEEeCCCCHHHHHHHhc
Q 028240 158 KYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 158 r~iGvs~~~~~~l~~~~~ 175 (211)
++=+.+|+-++.+.+..
T Consensus 750 -aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 750 -AIILTSHSMEEAEALCT 766 (885)
T ss_pred -EEEEEcCCHHHHHHHhh
Confidence 89999999888887643
No 166
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=44.94 E-value=1.3e+02 Score=26.29 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc-cCCceEEeccCCccccC-chhhHHHHHHHcCCeee
Q 028240 143 ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA-VHPITAVQLEWSLWARD-IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~ 209 (211)
..+..++.+.+.+.++.+-+...+.+.+++++. ..+..++..+-|+.-+- .-+++.+.|+++|+-|+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vI 179 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTV 179 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEE
Confidence 445555555445556666665557777877764 34555566666653332 23568899999998776
No 167
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=44.57 E-value=92 Score=20.66 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=38.9
Q ss_pred CCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEeCCC-CHHHHHHHhccCCceEEeccCC
Q 028240 123 DVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 123 g~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
.....|++++....+..+ ..+.++++++.+ .++-|-+++. +.....++++.+-..++.-+++
T Consensus 40 ~~~~~d~iiid~~~~~~~---~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 40 KKHPPDLIIIDLELPDGD---GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHSTESEEEEESSSSSSB---HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred cccCceEEEEEeeecccc---ccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 334489999986655444 445555555554 7788888864 5567777777655555544444
No 168
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=44.49 E-value=2.1e+02 Score=24.85 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCC--CcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
++..++++.|+++|+.-|=+...|.. +..+..+-+.++...+-+..|....-... ....+.+.+.++.+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a- 237 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG- 237 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH-
Confidence 34567788889999987766555543 34666666666543344556665553211 01233444444433
Q ss_pred hhcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCcccEEEeCCCC---HHHHHHHhcc
Q 028240 120 RRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHAV 176 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~ 176 (211)
++.|. -+.+.|..... ..+.++++.+++.+++|.--...++.+. ...+.++++.
T Consensus 238 ~~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 238 RETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred HHhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 33453 34555654322 2356778888888888865455555532 3455555554
No 169
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=44.38 E-value=1.5e+02 Score=23.04 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
++++...+.+.|.++|..++=|+..|..+.+-..--+.+++.-+.++=|---.+.. +.+...+-++...
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGik-----------t~~~~l~~~~~g~ 197 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIR-----------TLEDALAMIEAGA 197 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCC-----------CHHHHHHHHHhCh
Q ss_pred hhcCCC
Q 028240 120 RRLDVE 125 (211)
Q Consensus 120 ~~Lg~~ 125 (211)
.|+|++
T Consensus 198 ~riG~s 203 (203)
T cd00959 198 TRIGTS 203 (203)
T ss_pred hhccCC
No 170
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=43.78 E-value=2.1e+02 Score=24.46 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEe
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQ 132 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~l 132 (211)
+.+.+.+.++... .++.+++.+|.+
T Consensus 165 t~~~~~~~l~~~~-~l~~~~is~y~l 189 (360)
T TIGR00539 165 TLNSLKEELKLAK-ELPINHLSAYAL 189 (360)
T ss_pred CHHHHHHHHHHHH-ccCCCEEEeecc
Confidence 4555666655544 356666666554
No 171
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=43.76 E-value=1.7e+02 Score=23.38 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=52.4
Q ss_pred CCeEeC-CCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeec
Q 028240 56 ITFFDT-ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHR 134 (211)
Q Consensus 56 i~~~Dt-A~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~ 134 (211)
++.++. +..|..= +++.+.++.++. ++++.++.|+.......... ....+.+.+.+-+.++-|| +++..+++..
T Consensus 19 F~~VEvn~TFY~~P-~~~t~~~W~~~~-p~~F~F~vK~~~~iTH~~~l--~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRIP-SPETVARWREQT-PEGFRFSVKAPQLITHERRL--RDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSSS--HHHHHHHHCTS--TT-EEEEE--CCCCCCCHC--GSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCCC-CHHHHHHHHhhC-CCCeEEEEeccHHheecccc--cccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 555554 3355521 788899998874 57899999997543321110 1135666466666999999 8999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 028240 135 VDTSVPIEETIGEMKKLVEE 154 (211)
Q Consensus 135 ~~~~~~~~~~~~~l~~l~~~ 154 (211)
|..-..-.+.++.|..+.+.
T Consensus 94 Ppsf~~~~~~~~~l~~~l~~ 113 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLDR 113 (230)
T ss_dssp -TT--S-HHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHhh
Confidence 86433334566666666554
No 172
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.63 E-value=2e+02 Score=24.27 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHH-------
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV------- 111 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i------- 111 (211)
.+.++..+.++.+.+.|++.|-......+......+-+.++.+.+...-+..+. +++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~~ 138 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKKE 138 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhccC
Confidence 577889999999999999877765332221112222233332211110111111 122221
Q ss_pred ---HHHHHHHHhhcCCCceeEE--E-e-----ecCCC-CCCHHHHHHHHHHHHHcCcccE----EEeCCCCHHHHHH
Q 028240 112 ---RSCCEASLRRLDVEYIDLY--Y-Q-----HRVDT-SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRR 172 (211)
Q Consensus 112 ---~~~~~~sL~~Lg~~~iDl~--~-l-----h~~~~-~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~ 172 (211)
.+..-+.|++.|+++++.. - + +...+ ....++.+++++.+++.|.--. +|. ..+.+++.+
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 1344455667788877531 0 1 11111 2356788999999999986443 344 566655444
No 173
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=43.41 E-value=1.8e+02 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCcccEEEeCCCC
Q 028240 143 ETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
++++.++.+++.|.=-.+|+||-+
T Consensus 186 ~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 186 ELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHhCCCcEEEEecccH
Confidence 568888888888877799999975
No 174
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=43.03 E-value=2.3e+02 Score=24.83 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEeC--CCCHHHHHHHhccCCceE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHAVHPITA 181 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 181 (211)
++++...+-+.+.++.+ +++++..|-+..+ |+.+.+|.+.- .+.-.|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 35555555555554443 4677777755433 55666666652 33322211 247899999998888889
Q ss_pred EeccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 182 VQLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 182 ~q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
+|+..+-.-. ....++...|+++|+.++
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~ 360 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVV 360 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEE
Confidence 9988875321 123468899999999874
No 175
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=42.92 E-value=1.7e+02 Score=23.36 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc------EEEeCCCC-HHHHHHHhccCCceE
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK------YIGLSEAS-PDTIRRAHAVHPITA 181 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir------~iGvs~~~-~~~l~~~~~~~~~~~ 181 (211)
......++..-+......++-+++-.-+.....+|.+...+.|.+.|.-. +-|+++.+ .-...+......+.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 34556677777777777899999988777778889999999999998643 56777754 234556666677777
Q ss_pred EeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 182 VQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 182 ~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
+--.||. +..+=.|+.+||.-+|+
T Consensus 156 ItQ~FHc------eRAlfiA~~~gIdAic~ 179 (235)
T COG2949 156 ITQRFHC------ERALFIARQMGIDAICF 179 (235)
T ss_pred Eeccccc------HHHHHHHHHhCCceEEe
Confidence 7666663 34677899999877663
No 176
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=42.68 E-value=1.5e+02 Score=22.68 Aligned_cols=98 Identities=8% Similarity=0.006 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccE-EEeCCCCHHHHHHHhccCCceEEecc
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEASPDTIRRAHAVHPITAVQLE 185 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~~ 185 (211)
++.++.+.++. +.+.|.|+|.+-....+... .....++.++++++.....- +.+-..+.....+.......+.+|++
T Consensus 9 ~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 9 DFARLGEEVKA-VEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 45556666554 45778888888643333211 11234566666665432222 66666666655554445667788876
Q ss_pred CCccccCchhhHHHHHHHcCCee
Q 028240 186 WSLWARDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~gi~v 208 (211)
....+ .....++.++++|+.+
T Consensus 87 ~~~~~--~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 87 PEASE--HIHRLLQLIKDLGAKA 107 (210)
T ss_pred cCCch--hHHHHHHHHHHcCCcE
Confidence 64322 2345778888888754
No 177
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=42.26 E-value=1.1e+02 Score=22.81 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--cCcccEEEeCCCCHHHHHHHhccCCceEE
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 182 (211)
..+.+.+.+.+++--+.+|++ ++++|-.. --+.++++.+..+ +|.|--=|--+|..-.+.+++...++-++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-v~~~QSN~------EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK05395 25 STTLADIEALLEEEAAELGVE-LEFFQSNH------EGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEE
Confidence 347899999999999999974 77776322 2367777777653 34444445556677778888888777788
Q ss_pred eccCCcccc
Q 028240 183 QLEWSLWAR 191 (211)
Q Consensus 183 q~~~~~~~~ 191 (211)
.++.+-...
T Consensus 98 EVHiSNi~a 106 (146)
T PRK05395 98 EVHLSNIHA 106 (146)
T ss_pred EEecCCccc
Confidence 888876554
No 178
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=42.14 E-value=83 Score=27.39 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhcCCCCcEEEEeccccccCCC-cccccCCC----hHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHH
Q 028240 69 TNEILLGKALKELPRENIQVATKFGFVELGF-TSVIVKGT----PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIE 142 (211)
Q Consensus 69 ~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~-~~~~~~~s----~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~ 142 (211)
.++..+.+.++.....=+||-||+...-.+. ...+..++ -+.|++.+.+.|++-|+....+|++-+.+.. .++.
T Consensus 128 ~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp 207 (376)
T PF05049_consen 128 ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFP 207 (376)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHH
T ss_pred hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChH
Confidence 3777888999886556678999987521111 00111233 3567888999999999999999999988765 3555
Q ss_pred HHHHHHH
Q 028240 143 ETIGEMK 149 (211)
Q Consensus 143 ~~~~~l~ 149 (211)
...++|+
T Consensus 208 ~L~~tL~ 214 (376)
T PF05049_consen 208 KLEETLE 214 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 179
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=42.12 E-value=1.5e+02 Score=22.27 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCC-cEEEEeccccc
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFV 95 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~-~~~i~tK~~~~ 95 (211)
+.+...++++.+++.|++-+-+.. ..+..+.+.. .+ ++-+..+++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~-~~~~~~v~~~v~~~ 58 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADAL-AGSDVPVIVVVGFP 58 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHh-CCCCCeEEEEecCC
Confidence 678899999999999999877664 2333333332 23 56666777643
No 180
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=41.99 E-value=2.3e+02 Score=24.60 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=29.8
Q ss_pred cceeccccCCC----CCCCC-CCHHHHHHHHHHHHHcCCCeEeCC
Q 028240 23 KLGYGCMSLSG----CYNSP-LSEEDGISIIKHAFSKGITFFDTA 62 (211)
Q Consensus 23 ~lg~G~~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 62 (211)
+.+||.|.+|+ .||.+ .+.....+.++.+-+.|+..++..
T Consensus 8 ~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 8 RFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred ceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 67899998873 34443 344566788999999999998866
No 181
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.74 E-value=1.9e+02 Score=23.53 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcC-ccc--EEEeCCC----CHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 141 IEETIGEMKKLVEEG-KIK--YIGLSEA----SPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir--~iGvs~~----~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
++.+++.++++++.. .+. +.+..|- ..+.+.+......++.+-++.-+.+. ..++++.|+++|+..+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPI 144 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEE
Confidence 357788888888652 333 4444441 22444444444455555555544432 3579999999998744
No 182
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=41.67 E-value=1.2e+02 Score=25.06 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCCCceeEEEeecCCCC---CCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccC
Q 028240 110 YVRSCCEASLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEW 186 (211)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 186 (211)
.-+..+-+.|.++|+++|++-..-.|..- .+.+++.+.+.. ...++..++. -+...++.+++.. ++.+.+..
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~ 94 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEVAVFV 94 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEE
Confidence 34445666699999999999744333211 233444444443 2346677775 4667788888754 23333322
Q ss_pred Cccc--------cC------chhhHHHHHHHcCCeee
Q 028240 187 SLWA--------RD------IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 187 ~~~~--------~~------~~~~~~~~~~~~gi~v~ 209 (211)
+.-+ .. .-.+.+++++++|+.|.
T Consensus 95 ~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 95 SASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 2211 11 12346889999998874
No 183
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=41.61 E-value=2.7e+02 Score=25.27 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCCc
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSL 188 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~ 188 (211)
+.+.+..++.+ .-|.|.||+-.--. ....+.+...++.+++... .-|.+-+++++.++++++.+..-++ ..+.
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~~st---~p~~~~v~~~V~~l~~~~~-~pISIDT~~~~v~eaAL~aGAdiIN--sVs~ 237 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGTGSF---DDDPDVVKEKVKTALDALD-SPVIADTPTLDELYEALKAGASGVI--MPDV 237 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcC---CCcHHHHHHHHHHHHhhCC-CcEEEeCCCHHHHHHHHHcCCCEEE--ECCc
Confidence 44444444433 55889999853211 1223456667777776532 2489999999999999987543333 2222
Q ss_pred cccCchhhHHHHHHHcCCeeeeC
Q 028240 189 WARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
.+ .+++++.|.++|..++.|
T Consensus 238 ~~---~d~~~~l~a~~g~~vVlm 257 (499)
T TIGR00284 238 EN---AVELASEKKLPEDAFVVV 257 (499)
T ss_pred cc---hhHHHHHHHHcCCeEEEE
Confidence 21 235778888888877653
No 184
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=41.57 E-value=1.1e+02 Score=24.05 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCH----HHHHHHhcc
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP----DTIRRAHAV 176 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~----~~l~~~~~~ 176 (211)
...+.+.+++.++.+|.+ +.++ .+...+.+...+.++.+.++| +..|=++..++ ..++++.+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhc
Confidence 356788899999999964 3333 334455678889999999887 88887776543 445555443
No 185
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=41.12 E-value=2e+02 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (211)
..+.++..++.....+.|+..+|...
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccC
Confidence 45678888888888899999999874
No 186
>PRK06256 biotin synthase; Validated
Probab=40.65 E-value=2.2e+02 Score=23.91 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-eCCCCcCCCcHH-HHHHHHHhcCCC-CcEEEEeccccccCCCcccccCCChHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFF-DTADKYGPYTNE-ILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~g~~E-~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (211)
.+.++..+.++.+.+.|++.| -.+..++....+ +.+-+.++.+.+ -.+.+.+-.+. .+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 478899999999999998633 222233321111 234444444322 22333322221 133333
Q ss_pred HHHHhhcCCCceeEEEeec-------CCCCCCHHHHHHHHHHHHHcCcccE----EEeCCCCHHHHHHHh
Q 028240 116 EASLRRLDVEYIDLYYQHR-------VDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAH 174 (211)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~-------~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~ 174 (211)
+.|++.|++.+.+- +.. ......+++.+++++.+++.|.--. +|+ +.+.+++.+.+
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 34677787654331 111 1112346788999999999996332 344 45666655543
No 187
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=40.62 E-value=2.6e+02 Score=24.69 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEeCC--CCHHHHHHHhccCCceEE
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~~ 182 (211)
+++...+-+++.++.+ ++.++..|-+. +-|+.+.+|.+.- .+.-.|=-. .++..+.++++....+++
T Consensus 263 s~~eai~~~~~lle~~-----~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEKY-----PIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 4455554444444443 45677777543 3466666676653 444333222 258999999988888899
Q ss_pred eccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 183 QLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 183 q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
|+..+-.-. ....++...|+++|+.++
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~v 361 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAV 361 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEE
Confidence 988875322 123568899999999854
No 188
>PRK10551 phage resistance protein; Provisional
Probab=40.49 E-value=1.6e+02 Score=26.76 Aligned_cols=96 Identities=9% Similarity=0.142 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEeccCC
Q 028240 111 VRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~ 187 (211)
+...+.+.++.++....- +.+.-.+.. .......+.++.|++.|. .|.+.+|.. ..+..+ ...+++.+-++-+
T Consensus 366 f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L-~~l~vD~lKID~~ 441 (518)
T PRK10551 366 FKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYL-ERFTLDYLKIDRG 441 (518)
T ss_pred HHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHH-HhCCCCEEEECHH
Confidence 444555666666554322 222222211 112346678899999998 666666532 222222 2235566655544
Q ss_pred cccc--------CchhhHHHHHHHcCCeeee
Q 028240 188 LWAR--------DIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 188 ~~~~--------~~~~~~~~~~~~~gi~v~a 210 (211)
.... ..-..+++.|++.|+.|+|
T Consensus 442 fv~~i~~~~~~~~il~~ii~la~~lgi~vVA 472 (518)
T PRK10551 442 FIQAIGTETVTSPVLDAVLTLAKRLNMLTVA 472 (518)
T ss_pred HHhhhccChHHHHHHHHHHHHHHHCCCEEEE
Confidence 3321 1224589999999999987
No 189
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.35 E-value=1.9e+02 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADK 64 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (211)
..+.++..++++...+.|+..++....
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 357799999999999999999997754
No 190
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=40.33 E-value=2.4e+02 Score=24.25 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCC-cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (211)
.+.++..+.++.+.+.|++.|-....-+.- ..-+.+.+.++.+...--.+...+.+ .+.+.+ +
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~-----------lt~e~~-----~ 166 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP-----------LNEEEY-----K 166 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc-----------CCHHHH-----H
Confidence 368999999999999999976533211111 11233455555432110001111111 244444 6
Q ss_pred HHhhcCCCceeEEEeec----------CCCCCCHHHHHHHHHHHHHcCcc
Q 028240 118 SLRRLDVEYIDLYYQHR----------VDTSVPIEETIGEMKKLVEEGKI 157 (211)
Q Consensus 118 sL~~Lg~~~iDl~~lh~----------~~~~~~~~~~~~~l~~l~~~G~i 157 (211)
-|+..|++++.+.+=-. ......+++.+++++.+++.|.-
T Consensus 167 ~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 167 KLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 77888988776654221 12233578899999999999863
No 191
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.45 E-value=2e+02 Score=24.99 Aligned_cols=79 Identities=8% Similarity=0.172 Sum_probs=49.0
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCcccEEEe-----C--CCCHHHHHHH---hccC------CceEE
Q 028240 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGL-----S--EASPDTIRRA---HAVH------PITAV 182 (211)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGv-----s--~~~~~~l~~~---~~~~------~~~~~ 182 (211)
+-||.|++. .+++++++++.+..++.. |.|-+ . |.+.++.+++ +... +.-++
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 578998653 247899999998875533 23322 2 4555555544 4444 56889
Q ss_pred eccCCccccC-----ch---hhHHHHHHHcCCeee
Q 028240 183 QLEWSLWARD-----IE---NEIVPLCRFVRLAVK 209 (211)
Q Consensus 183 q~~~~~~~~~-----~~---~~~~~~~~~~gi~v~ 209 (211)
-++||..... .. ....+.++++||.+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vt 345 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCT 345 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEE
Confidence 9999986431 11 235566778888763
No 192
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=39.45 E-value=1.2e+02 Score=23.43 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=40.2
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-CCCHHHHHHHhccCCceEEeccCC
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
.++|++++-+..-.......+ .+....|.++... .+..+||- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 467877666543222111121 3444445554433 36778885 677888888887788899999765
No 193
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.27 E-value=2.4e+02 Score=24.04 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=48.5
Q ss_pred CcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC---CC--HHHHHHHHHHHHHcCccc
Q 028240 84 ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS---VP--IEETIGEMKKLVEEGKIK 158 (211)
Q Consensus 84 ~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~---~~--~~~~~~~l~~l~~~G~ir 158 (211)
.++.|..|+.......+ ..+.+.. ..+-+.|+..|+|+|++=.- +.... .. ....++.+.+.++ +.+.
T Consensus 214 ~~~~v~~R~s~~~~~~~----g~~~ee~-~~i~~~L~~~GvD~I~Vs~g-~~~~~~~~~~~~~~~~~~~ik~~~~-~~iP 286 (353)
T cd04735 214 KDFILGYRFSPEEPEEP----GIRMEDT-LALVDKLADKGLDYLHISLW-DFDRKSRRGRDDNQTIMELVKERIA-GRLP 286 (353)
T ss_pred CCceEEEEECcccccCC----CCCHHHH-HHHHHHHHHcCCCEEEeccC-ccccccccCCcchHHHHHHHHHHhC-CCCC
Confidence 57888889876432111 2234333 23445567778777766321 11111 11 1223333433332 4567
Q ss_pred EEEeCCC-CHHHHHHHhccCCceEE
Q 028240 159 YIGLSEA-SPDTIRRAHAVHPITAV 182 (211)
Q Consensus 159 ~iGvs~~-~~~~l~~~~~~~~~~~~ 182 (211)
-+++... +++.++++++. ..+.+
T Consensus 287 Vi~~Ggi~t~e~ae~~l~~-gaD~V 310 (353)
T cd04735 287 LIAVGSINTPDDALEALET-GADLV 310 (353)
T ss_pred EEEECCCCCHHHHHHHHHc-CCChH
Confidence 7888775 78999998876 34444
No 194
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=39.10 E-value=1e+02 Score=24.34 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP 82 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~ 82 (211)
.+.+++.++.++.++.|++.++....-.+ +.+.+.+.-++++
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~--a~~~i~~l~~~~~ 58 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPV--ALDAIRLLRKEVP 58 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcc--HHHHHHHHHHHCC
Confidence 47899999999999999999998865443 6667766655544
No 195
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=39.09 E-value=1.8e+02 Score=24.22 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=54.0
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHH-----HHHHHHHHHcCcccEEEeCCCCHH-------HHHHHhccCCceEEeccC
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEET-----IGEMKKLVEEGKIKYIGLSEASPD-------TIRRAHAVHPITAVQLEW 186 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 186 (211)
++-++-..+|+..+..+.......+. -+.+.++..+--=|.+|+.+.++. ++++..+...+.-+|+.-
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 67777788888888741111111122 256778887778889999987654 344444444444444422
Q ss_pred Ccccc--C-c-hhhHHHHHHHcCCeee
Q 028240 187 SLWAR--D-I-ENEIVPLCRFVRLAVK 209 (211)
Q Consensus 187 ~~~~~--~-~-~~~~~~~~~~~gi~v~ 209 (211)
-.... + . -..++++|.++|+.|+
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ 161 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVV 161 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEE
Confidence 21111 1 1 1469999999999875
No 196
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=38.91 E-value=1.1e+02 Score=26.64 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCcc---cEEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 143 ETIGEMKKLVEEGKI---KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 143 ~~~~~l~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
+-++.+.+|++.-.+ -.-|=+.++...+.++++....+++|....-.-- ..-..+.+.|+.+|+.+.
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~ 316 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVV 316 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeec
Confidence 346777778776432 2336777889999999998889999998875321 123479999999999874
No 197
>PRK07328 histidinol-phosphatase; Provisional
Probab=38.83 E-value=2.1e+02 Score=23.22 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCcCC------------CcHHHHHHHHHhc-------CCCCcEEEEeccccccCCCcccc
Q 028240 43 DGISIIKHAFSKGITFFDTADKYGP------------YTNEILLGKALKE-------LPRENIQVATKFGFVELGFTSVI 103 (211)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~------------g~~E~~lG~~l~~-------~~r~~~~i~tK~~~~~~~~~~~~ 103 (211)
...+++++|.+.|+..+=.+++... +....-+-..++. +++=+|.+..-+...
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 4668899999999998877766331 0111122222222 211133333333321
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-------------CCHHHH----HHHHHHHHHcCcccEEEeCCC-
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------VPIEET----IGEMKKLVEEGKIKYIGLSEA- 165 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-------------~~~~~~----~~~l~~l~~~G~ir~iGvs~~- 165 (211)
+ .-...+++.|++-..|++ +.-+|+.+.. .+.++. ++.+.++.+.|.+.-||=-..
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i 164 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLI 164 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHH
Confidence 1 123445556667666766 6677875321 112233 345777778888877764432
Q ss_pred ---C-------HHHHHHHh----ccC-CceEEeccC--CccccCchhhHHHHHHHcCCeee
Q 028240 166 ---S-------PDTIRRAH----AVH-PITAVQLEW--SLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 166 ---~-------~~~l~~~~----~~~-~~~~~q~~~--~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
+ .+.+++++ +.. .+.+|-..+ ..-..-+...++..|++.|+.++
T Consensus 165 ~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 165 KKFGHRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred HHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 1 11222222 222 233333211 11122234579999999998753
No 198
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.73 E-value=2.1e+02 Score=24.42 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=67.1
Q ss_pred HhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcc
Q 028240 78 LKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (211)
Q Consensus 78 l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (211)
+....|+++=++|++.......+-+.-.-+ ..+.+.+-+.+++.|- +..+|..+ .++.....++.+..|++
T Consensus 17 lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G~----~~~~~k~~----~e~~~~~~r~~~~~~l~ 87 (326)
T PRK05458 17 CIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENGY----FYIMHRFD----PEARIPFIKDMHEQGLI 87 (326)
T ss_pred CCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcCC----EEEEecCC----HHHHHHHHHhccccccE
Confidence 444567788888887532211111000112 3788888888888873 46677732 34444444555566775
Q ss_pred cEEEeCC--CCHHHHHHHhccC-CceEEeccCCccccCchhhHHHHHHHc--CCeeee
Q 028240 158 KYIGLSE--ASPDTIRRAHAVH-PITAVQLEWSLWARDIENEIVPLCRFV--RLAVKS 210 (211)
Q Consensus 158 r~iGvs~--~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~~~--gi~v~a 210 (211)
-.++++. ...+.+.++++.. .+++++++...-+-..-.+++...+++ ++.|++
T Consensus 88 v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 88 ASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 4444443 2334555555543 357888866653333334555555554 366654
No 199
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=38.66 E-value=2.8e+02 Score=24.48 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCc----HHHHHHHHHhc-----CCCCcEEEEeccccccCCCcccccCCChHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYT----NEILLGKALKE-----LPRENIQVATKFGFVELGFTSVIVKGTPEY 110 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~----~E~~lG~~l~~-----~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~ 110 (211)
+..++.+++..|++.|- .+.|++.- +-+.+.+.+.+ +..+++++++-+..
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~q---------------- 137 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQ---------------- 137 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchH----------------
Confidence 34667777888888773 45776532 55566666543 34678888876532
Q ss_pred HHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC---C--CHHHHHHHhcc-CCceEEec
Q 028240 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A--SPDTIRRAHAV-HPITAVQL 184 (211)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~--~~~~l~~~~~~-~~~~~~q~ 184 (211)
-.+-+-++|.+-|.+ +++-+|. .++-++......| -||++-+-. | +.+.++.+..- +.--++.+
T Consensus 138 AIe~~i~~LA~p~aN----ILlPrPG--fp~Y~~~a~~~~l----EVR~ydlLPe~~weIDL~~veal~DENT~AivviN 207 (447)
T KOG0259|consen 138 AIELAISSLANPGAN----ILLPRPG--FPLYDTRAIYSGL----EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVIN 207 (447)
T ss_pred HHHHHHHHhcCCCCc----eecCCCC--CchHHHhhhhcCc----eeEeecccCcccceechHHHHHhhccCeeEEEEeC
Confidence 112222334444432 3444442 3322222211111 244444432 1 23344544432 22223344
Q ss_pred cCCc----cccCchhhHHHHHHHcCCeeee
Q 028240 185 EWSL----WARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 185 ~~~~----~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+-|+ +....-+++.+.|+++||-|+|
T Consensus 208 P~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 208 PNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 4443 3333346789999999999886
No 200
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.62 E-value=1.3e+02 Score=23.85 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCC-CcEEE
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPR-ENIQV 88 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r-~~~~i 88 (211)
.+.+++..+.++.++.|++.++.+..-.. +.+.+.+.-++++. .++.|
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~--a~~~i~~l~~~~~~~p~~~v 70 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPF--ASEVIKELVELYKDDPEVLI 70 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCcc--HHHHHHHHHHHcCCCCCeEE
Confidence 47899999999999999999998876443 66666655554432 24544
No 201
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=38.56 E-value=1.6e+02 Score=23.71 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHhhcCCC--------------------------ceeEEEeecCCCCCCH---HHHHHHHHHHHHcCc
Q 028240 106 GTPEYVRSCCEASLRRLDVE--------------------------YIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 156 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~--------------------------~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ 156 (211)
.+...+++.+++.-++|+.. ..+++++..|....++ ....+.+.+++++|+
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr 184 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR 184 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCc
Confidence 45566666666666666643 3456666666555554 367788888999887
Q ss_pred ccEEEeCCCCHHHHHHHhc
Q 028240 157 IKYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~ 175 (211)
.+=+|+|..++++++..
T Consensus 185 --~viFSSH~m~EvealCD 201 (245)
T COG4555 185 --AVIFSSHIMQEVEALCD 201 (245)
T ss_pred --EEEEecccHHHHHHhhh
Confidence 78899999888887754
No 202
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.36 E-value=2.1e+02 Score=22.94 Aligned_cols=88 Identities=9% Similarity=0.012 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHH-HHHHcCcccEEEeCC-CCHHHHHHHhccC-CceEEec
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMK-KLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQL 184 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~-~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 184 (211)
++... .+-+.|-+-|+..+.+=+ -. ....+.++.|. +..++.-=-.||+.+ .+.++++++++.+ .|-
T Consensus 26 ~~~a~-~~~~al~~gGi~~iEiT~---~t--p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi---- 95 (222)
T PRK07114 26 VEVAK-KVIKACYDGGARVFEFTN---RG--DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI---- 95 (222)
T ss_pred HHHHH-HHHHHHHHCCCCEEEEeC---CC--CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE----
Confidence 44443 344556667877666533 11 11234444443 222332223689988 5889999998864 332
Q ss_pred cCCccccCchhhHHHHHHHcCCeee
Q 028240 185 EWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
..+....+++++|+++||.++
T Consensus 96 ----VsP~~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 96 ----VTPLFNPDIAKVCNRRKVPYS 116 (222)
T ss_pred ----ECCCCCHHHHHHHHHcCCCEe
Confidence 123345689999999999875
No 203
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=38.27 E-value=1.1e+02 Score=23.30 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCc----eeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc
Q 028240 111 VRSCCEASLRRLDVEY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (211)
Q Consensus 111 i~~~~~~sL~~Lg~~~----iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 176 (211)
.+..++..++++|.+. ++.+. ........+.++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLA-EAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556666777777541 11111 11111123457888999999987 55566788777766655543
No 204
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=37.67 E-value=2.8e+02 Score=24.18 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=59.6
Q ss_pred CcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHH
Q 028240 64 KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE 143 (211)
Q Consensus 64 ~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~ 143 (211)
.+|.| +-..+|+.+++...+.++|.+--+.. ...+.+.+.++|+.-|+++ .....+.++...+.
T Consensus 31 ~fG~g-~~~~l~~~~~~~g~~~~lvv~~~~~~------------~~g~~~~v~~~L~~~gi~~---~~~~~v~~~P~~~~ 94 (395)
T PRK15454 31 LCGPG-AVSSCGQQAQTRGLKHLFVMADSFLH------------QAGMTAGLTRSLAVKGIAM---TLWPCPVGEPCITD 94 (395)
T ss_pred EECcC-HHHHHHHHHHhcCCCEEEEEcCcchh------------hCccHHHHHHHHHHcCCeE---EEECCCCCCcCHHH
Confidence 35665 55667888887544566666532221 1224445788888777653 23344555555667
Q ss_pred HHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc
Q 028240 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (211)
+-++++.+++.+-=-=|||..-++-...+++.
T Consensus 95 v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia 126 (395)
T PRK15454 95 VCAAVAQLRESGCDGVIAFGGGSVLDAAKAVA 126 (395)
T ss_pred HHHHHHHHHhcCcCEEEEeCChHHHHHHHHHH
Confidence 77777777777666677888877766666543
No 205
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.54 E-value=1.3e+02 Score=23.90 Aligned_cols=86 Identities=8% Similarity=0.097 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccC-CceEEec
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQL 184 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 184 (211)
+++...+- -+.|..-|++.+.+= +-. .+..+.+++++++.-=-.||.-+ .+.++++.+++.+ .|.+
T Consensus 25 ~~~~a~~i-~~al~~~Gi~~iEit---l~~-----~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv--- 92 (212)
T PRK05718 25 KLEDAVPL-AKALVAGGLPVLEVT---LRT-----PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV--- 92 (212)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEe---cCC-----ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE---
Confidence 34444433 344555676666664 111 14667777777664335688887 4678888888764 3322
Q ss_pred cCCccccCchhhHHHHHHHcCCeee
Q 028240 185 EWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.+....++++.|++++|.++
T Consensus 93 -----sP~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 93 -----SPGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred -----CCCCCHHHHHHHHHcCCCEe
Confidence 12224589999999999876
No 206
>PRK07945 hypothetical protein; Provisional
Probab=37.51 E-value=2.6e+02 Score=23.79 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCC-----CcHHHHHHHHHhcC---C---CC-cEEEEeccccccCCCcccccCCChH
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKEL---P---RE-NIQVATKFGFVELGFTSVIVKGTPE 109 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~~E~~lG~~l~~~---~---r~-~~~i~tK~~~~~~~~~~~~~~~s~~ 109 (211)
....+++++|.+.|+..+=.+++... +.+...+-..++.+ + ++ +|.+..-+.... +.+.+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~--------~g~~~ 182 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD--------DGSLD 182 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC--------CCCcc
Confidence 44678999999999999888877532 22222222222221 1 12 222222222210 11122
Q ss_pred HHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC---------------CCHHHHHHH-
Q 028240 110 YVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------------ASPDTIRRA- 173 (211)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------------~~~~~l~~~- 173 (211)
... +.|+. .||+ +.-+|+... .+.++..+.+.++.+.+.+.-+|=-. +..+.+.++
T Consensus 183 ~~~----~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~ 254 (335)
T PRK07945 183 QEP----ELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAAC 254 (335)
T ss_pred hhH----HHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHH
Confidence 222 22332 4554 556687643 33456678888878888887777321 222222222
Q ss_pred hccC-CceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 174 HAVH-PITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 174 ~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.+.. .+.+|- +.+...+...+++.|++.|+.|.
T Consensus 255 ~e~g~~lEINt---~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 255 REHGTAVEINS---RPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HHhCCEEEEeC---CCCCCCChHHHHHHHHHcCCeEE
Confidence 2222 233342 22223345679999999998763
No 207
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=37.48 E-value=1.5e+02 Score=26.21 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCc-ccEEEeCC---CCHHHHHHHhcc-CC---ceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 143 ETIGEMKKLVEEGK-IKYIGLSE---ASPDTIRRAHAV-HP---ITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 143 ~~~~~l~~l~~~G~-ir~iGvs~---~~~~~l~~~~~~-~~---~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
-+...++.|+++|. ++++.|.+ .+.+.++++++. ++ ++.+.++-.+..+ -+++...|++.||.|+
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P--v~EI~~icr~~~v~v~ 215 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP--VKEIVKICREEGVQVH 215 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc--HHHHHHHhCcCCcEEE
Confidence 36677778888884 56778876 345666776664 22 3333333333333 4689999999999765
No 208
>PTZ00081 enolase; Provisional
Probab=37.38 E-value=3e+02 Score=24.52 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEe--CCCCHHHHHHHhccCCceE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL--SEASPDTIRRAHAVHPITA 181 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 181 (211)
.+++.+.+-+.+.++.++ ++++..|-+. +-|+.+.+|.++= .+.-+|= +..++..+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 467777776767776665 4666666443 3466666666552 4544443 2457899999999888889
Q ss_pred EeccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 182 VQLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 182 ~q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
+|+..|-.-. ....++...|+++|+.++
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 9998884321 123568999999998865
No 209
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=37.26 E-value=1.2e+02 Score=25.25 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=40.1
Q ss_pred ceeEEEeecCCCCCCH---HHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc
Q 028240 126 YIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 126 ~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (211)
..++++|..|....+. .+.++.+.++.++|. +.|=+|+|..+.++....
T Consensus 154 ~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 154 DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 3588888888777664 478999999999987 688899999998888643
No 210
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=37.23 E-value=1.3e+02 Score=25.62 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=62.2
Q ss_pred CcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHH
Q 028240 64 KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE 143 (211)
Q Consensus 64 ~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~ 143 (211)
.||.| +-+.+++.++... .-++|+.+ .. ....+.+.+...|++-+.++ ..+.....+.+.+.
T Consensus 5 ~~G~g-~l~~l~~~l~~~g-r~lvVt~~-~~------------~~~~~~~~v~~~L~~~~i~~---~~~~~~~~~p~~~~ 66 (366)
T PF00465_consen 5 IFGRG-ALEELGEELKRLG-RVLVVTDP-SL------------SKSGLVDRVLDALEEAGIEV---QVFDGVGPNPTLED 66 (366)
T ss_dssp EESTT-GGGGHHHHHHCTT-EEEEEEEH-HH------------HHHTHHHHHHHHHHHTTCEE---EEEEEESSS-BHHH
T ss_pred EEccC-HHHHHHHHHHhcC-CEEEEECc-hH------------HhCccHHHHHHHHhhCceEE---EEEecCCCCCcHHH
Confidence 35655 5778888888764 34555555 22 12336777888888878644 44454555666788
Q ss_pred HHHHHHHHHHcCcccEEEeCCCCHHHHHHHh
Q 028240 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (211)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (211)
+-++++.+++.|-=-=|||..-+.-.+.+++
T Consensus 67 v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~v 97 (366)
T PF00465_consen 67 VDEAAEQARKFGADCIIAIGGGSVMDAAKAV 97 (366)
T ss_dssp HHHHHHHHHHTTSSEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCcHHHHH
Confidence 8899999998887677788887766666654
No 211
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=37.07 E-value=2.1e+02 Score=22.53 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=68.8
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCccccc
Q 028240 25 GYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIV 104 (211)
Q Consensus 25 g~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~ 104 (211)
++-+..=||.+ ..++++-.+++..+++.|..++|.-.... .+...-.......+.+++++..-....
T Consensus 60 T~R~~~eGG~~--~~~~~~~~~ll~~~~~~~~d~iDiE~~~~---~~~~~~~~~~~~~~~~iI~S~H~f~~t-------- 126 (224)
T PF01487_consen 60 TVRTKEEGGRF--QGSEEEYLELLERAIRLGPDYIDIELDLF---PDDLKSRLAARKGGTKIILSYHDFEKT-------- 126 (224)
T ss_dssp E--BGGGTSSB--SS-HHHHHHHHHHHHHHTSSEEEEEGGCC---HHHHHHHHHHHHTTSEEEEEEEESS----------
T ss_pred EecccccCCCC--cCCHHHHHHHHHHHHHcCCCEEEEEcccc---hhHHHHHHHHhhCCCeEEEEeccCCCC--------
Confidence 44444444444 35778899999999999999999876633 333222222222466777777633221
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHH
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 173 (211)
.+.+.+.+.+++.. .+|.|.+=+..... ...+....++...++++.-...-|+++--..-.+-++
T Consensus 127 -p~~~~l~~~~~~~~-~~gadivKia~~~~--~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi 191 (224)
T PF01487_consen 127 -PSWEELIELLEEMQ-ELGADIVKIAVMAN--SPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRI 191 (224)
T ss_dssp --THHHHHHHHHHHH-HTT-SEEEEEEE-S--SHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHH
T ss_pred -CCHHHHHHHHHHHH-hcCCCeEEEEeccC--CHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHH
Confidence 13444555555554 67765444433221 1123345566666666543455555554433333343
No 212
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=37.04 E-value=1.6e+02 Score=24.99 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=63.8
Q ss_pred HHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCC---cEEEEeccccccCCCcc----------cccCCChHHHHHHHHH
Q 028240 51 AFSKGITFFDTADKYGPYTNEILLGKALKELPRE---NIQVATKFGFVELGFTS----------VIVKGTPEYVRSCCEA 117 (211)
Q Consensus 51 A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~---~~~i~tK~~~~~~~~~~----------~~~~~s~~~i~~~~~~ 117 (211)
-+..|+|.+ .||-|..-.++-++.+..-.+ ..+|......+.-.-.. ......+..+.++++.
T Consensus 50 eL~~GFnlL----~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~ 125 (326)
T PF04084_consen 50 ELSQGFNLL----FYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDF 125 (326)
T ss_pred HHhCCCeEE----EEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHH
Confidence 457899998 899988888888887763333 34444443322111000 0001223344555555
Q ss_pred HHhhcCCC--ceeEE-EeecCCCCC-CHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 118 SLRRLDVE--YIDLY-YQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 118 sL~~Lg~~--~iDl~-~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
..+.+... ...+| ++|+.|... +-+..-..|..|-..-.|+-|+--.
T Consensus 126 i~~~l~~~~~~~~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p~I~lIASiD 176 (326)
T PF04084_consen 126 IISYLESRPSPPPLYLVIHNIDGPSLRNEKAQSLLAQLASIPNIHLIASID 176 (326)
T ss_pred HHHHHhccCCCCceEEEEECCCChhhcChHHHHHHHHHHcCCCeEEEEecc
Confidence 55555433 45665 459998643 3446677788888888888776554
No 213
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.64 E-value=1.3e+02 Score=20.21 Aligned_cols=39 Identities=3% Similarity=0.026 Sum_probs=24.4
Q ss_pred HHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 169 TIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
.+...+...++.++.+.|. .+.....+.+.|+++|+.++
T Consensus 41 ~l~~~i~~aD~VIv~t~~v--sH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYV--SHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred HHHHhcCCCCEEEEEeCCc--ChHHHHHHHHHHHHcCCcEE
Confidence 3566655555555544443 55445678888888888775
No 214
>PLN02540 methylenetetrahydrofolate reductase
Probab=36.23 E-value=3.5e+02 Score=25.01 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCC-cEEEEeccccccCCCcccccCCChHHHHHHHHHHHh
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (211)
+...+.+++..+.|-.|+|.++.-|....+..+.-+..- .++ .+-.+-.+.-. +.+...|...++.. .
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~l-q~~~Gie~i~HLTCr---------d~n~~~L~~~L~~a-~ 83 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRM-QNMICVETMMHLTCT---------NMPVEKIDHALETI-K 83 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHH-HHhcCCCeeEEeeec---------CCCHHHHHHHHHHH-H
Confidence 455666777778899999999877765566654433221 111 22233333211 23567777777666 7
Q ss_pred hcCCCceeEEEeecCCCC---------CCHHHHHHHHHHHHHc-CcccEEEeCCCCH------------------HHHHH
Q 028240 121 RLDVEYIDLYYQHRVDTS---------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------DTIRR 172 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~---------~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~------------------~~l~~ 172 (211)
.+|+. +++.|-.-.+. ..+..+.+-++.+++. |....|||..+.. ..+..
T Consensus 84 ~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~ 161 (565)
T PLN02540 84 SNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAY 161 (565)
T ss_pred HCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHH
Confidence 88876 44555431111 1233455666666654 5567888885411 13333
Q ss_pred Hhcc----CCceEEeccCCccccCchhhHHHHHHHcCC
Q 028240 173 AHAV----HPITAVQLEWSLWARDIENEIVPLCRFVRL 206 (211)
Q Consensus 173 ~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi 206 (211)
+.+. ..+-+-|.-|..-. -.+.++.|++.||
T Consensus 162 Lk~KvdAGAdFiITQlfFD~d~---f~~f~~~~r~~Gi 196 (565)
T PLN02540 162 LKEKVDAGADLIITQLFYDTDI---FLKFVNDCRQIGI 196 (565)
T ss_pred HHHHHHcCCCEEeeccccCHHH---HHHHHHHHHhcCC
Confidence 3222 34555666665411 2367899999984
No 215
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=35.99 E-value=93 Score=26.25 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 34 CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
-||.+.+.++-.++++..-+.|.|.+ .|++ .++.+...|+.-. +..+.+ +
T Consensus 7 FYG~PWs~e~R~~l~~f~~~~kmN~Y----iYAP---------------KdDpyhr~~Wre~----------Yp~~el-~ 56 (306)
T PF07555_consen 7 FYGRPWSHEDRLDLIRFLGRYKMNTY----IYAP---------------KDDPYHRSKWREP----------YPEEEL-A 56 (306)
T ss_dssp SSSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS-------------HHHH-H
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCceE----EECC---------------CCChHHHhhhccc----------CCHHHH-H
Confidence 35666788999999999999999977 6763 2232222333221 123332 3
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCC------CHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
.+++..+.-....+++++-=.|.... +++.+...+++|.+.| ||++||.-
T Consensus 57 ~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Failf 112 (306)
T PF07555_consen 57 ELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAILF 112 (306)
T ss_dssp HHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-
T ss_pred HHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEee
Confidence 34433333334456777665553332 3456788888999886 68888764
No 216
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.97 E-value=45 Score=20.80 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHH----HHcCCCeEe
Q 028240 40 SEEDGISIIKHA----FSKGITFFD 60 (211)
Q Consensus 40 ~~~~~~~~l~~A----~~~Gi~~~D 60 (211)
++.+|.++++.| ++.|+.++|
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~ 39 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYN 39 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccc
Confidence 556676766655 588999876
No 217
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.87 E-value=2.8e+02 Score=23.68 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHH--------------------HhcCCCCcEEEEeccccccC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA--------------------LKELPRENIQVATKFGFVEL 97 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~--------------------l~~~~r~~~~i~tK~~~~~~ 97 (211)
..+.+....+.+++-+.|+.+|=|...-. +-.++-+. +.+ ....++++|=.
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGm----- 142 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGM----- 142 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHh-cCCcEEEECCC-----
Confidence 35778889999999999999987765432 22222221 111 12233333332
Q ss_pred CCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHH-HHHHHHHHHHHcCcccEEEeCCCCHHHHHHH--
Q 028240 98 GFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIE-ETIGEMKKLVEEGKIKYIGLSEASPDTIRRA-- 173 (211)
Q Consensus 98 ~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~-~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~-- 173 (211)
.+.+.|..+++...+. |.+.-++.++|+.... .+.+ --+.++..|++.=. .-||+|.|+.......
T Consensus 143 --------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aA 212 (329)
T TIGR03569 143 --------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAA 212 (329)
T ss_pred --------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHH
Confidence 1678899999888643 4321258999987543 2222 34666777766532 4799999976543222
Q ss_pred hccCCceEEeccCCc
Q 028240 174 HAVHPITAVQLEWSL 188 (211)
Q Consensus 174 ~~~~~~~~~q~~~~~ 188 (211)
+..+ -.++.-+|.+
T Consensus 213 valG-A~iIEkH~tl 226 (329)
T TIGR03569 213 VALG-ATVIEKHFTL 226 (329)
T ss_pred HHcC-CCEEEeCCCh
Confidence 2222 2355555554
No 218
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=35.80 E-value=1.2e+02 Score=22.44 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH--cCcccEEEeCCCCHHHHHHHhccCCceEEe
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 183 (211)
.+.+.+.+.+++..+.+|++ ++++|-.. -.+.++.+.+..+ +|.|--=|--++..-.+.+++.....-++.
T Consensus 25 ~tl~~i~~~~~~~a~~~g~~-v~~~QSN~------EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vE 97 (140)
T PF01220_consen 25 TTLEDIEQKCKETAAELGVE-VEFFQSNH------EGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVE 97 (140)
T ss_dssp SHHHHHHHHHHHHHHHTTEE-EEEEE-SS------HHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEE
T ss_pred CCHHHHHHHHHHHHHHCCCe-EEEEecCC------HHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEE
Confidence 46788999999999999964 77777322 2367888887764 466666677777777888888877666888
Q ss_pred ccCCccccC
Q 028240 184 LEWSLWARD 192 (211)
Q Consensus 184 ~~~~~~~~~ 192 (211)
++.+-...+
T Consensus 98 VHiSNi~~R 106 (140)
T PF01220_consen 98 VHISNIHAR 106 (140)
T ss_dssp EESS-GGGS
T ss_pred EEcCCcccc
Confidence 888765543
No 219
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=35.47 E-value=1.5e+02 Score=23.39 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCC
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (211)
+++.+.+.+ +..+ +|++|||...+ .+.++.|.+......++.+.+.+.
T Consensus 65 ~~~~i~~~~----~~~~---~d~vQLHg~e~----~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 65 SDEEIDEIV----ETVP---LDLLQLHGDET----PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CHHHHHHHH----HhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCCH
Confidence 444444443 4444 68899998643 233344443333467888888753
No 220
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=35.39 E-value=1.9e+02 Score=21.53 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEeCCCCHHHHHHHhccCCceEE
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSEASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~~~~~~l~~~~~~~~~~~~ 182 (211)
..+.+.|.+.+++.-+.+|++ ++++|-.. -.+.++++.+..+++ .|-.=|--+++.-.+++++....+-++
T Consensus 24 ~~Tl~di~~~~~~~a~~~g~~-v~~~QSN~------Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~v 96 (146)
T COG0757 24 STTLEDIEADLEEEAAKLGVE-VEFRQSNH------EGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVV 96 (146)
T ss_pred cccHHHHHHHHHHHHHHcCce-EEEEecCc------hHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEE
Confidence 447899999999999999974 66665211 236888888888875 233334445666778888887777788
Q ss_pred eccCCccccC
Q 028240 183 QLEWSLWARD 192 (211)
Q Consensus 183 q~~~~~~~~~ 192 (211)
.+..|-.+.+
T Consensus 97 EVHlSNihaR 106 (146)
T COG0757 97 EVHLSNIHAR 106 (146)
T ss_pred EEEecCchhc
Confidence 8888866654
No 221
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.29 E-value=1.6e+02 Score=20.68 Aligned_cols=84 Identities=20% Similarity=0.078 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCC-cc--------cccCCChHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGF-TS--------VIVKGTPEY 110 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~-~~--------~~~~~s~~~ 110 (211)
|..-.....--.++.|.-|+-|-..|.-| .|.++---|-+ ..+++++++|+.|..... .+ ....-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 34445666667789999999999999865 55555444432 246899999986532221 11 001112357
Q ss_pred HHHHHHHHHhh-cCCC
Q 028240 111 VRSCCEASLRR-LDVE 125 (211)
Q Consensus 111 i~~~~~~sL~~-Lg~~ 125 (211)
++.++|.-|.. +|-+
T Consensus 96 vr~~IE~~Lg~~igss 111 (117)
T COG3215 96 VRNQIETLLGGTIGSS 111 (117)
T ss_pred HHHHHHHHHHhhccCC
Confidence 88899988854 3544
No 222
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.17 E-value=2.5e+02 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADK 64 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (211)
..+.++..++.+..-+.||..++....
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~ 42 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYR 42 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecC
Confidence 457799999999999999999998743
No 223
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=34.87 E-value=2.8e+02 Score=23.40 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCC----------cCC--CcHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCC
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADK----------YGP--YTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~--g~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 106 (211)
++++..++.+.+.+.|+..+|.=-. +|. ...-+.+.+.++.+. .-++-|+.|+......
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC--------
Confidence 6677777888888899999994222 221 011233333333321 1134567776422110
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEEe
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 183 (211)
+..... .+-+.++..|. |.+.+|..+..... ..-|+.+.++++.=.|--||... .+++.++++++....+.++
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111111 23334566775 55677865422111 13478888888877788888877 5888888888765556665
Q ss_pred c
Q 028240 184 L 184 (211)
Q Consensus 184 ~ 184 (211)
+
T Consensus 223 i 223 (321)
T PRK10415 223 I 223 (321)
T ss_pred E
Confidence 5
No 224
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.83 E-value=1.1e+02 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA 77 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~ 77 (211)
.+.+++.++.++.++.|++.++.+..-.+ +.+.+...
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~--a~~~i~~l 60 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDF--AHEVFAEL 60 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCc--HHHHHHHH
Confidence 47899999999999999999998876554 66666444
No 225
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=34.81 E-value=2.7e+02 Score=23.21 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCc-c-cEEEeCCCCHHHHHHH
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-I-KYIGLSEASPDTIRRA 173 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-i-r~iGvs~~~~~~l~~~ 173 (211)
.+.+.+++-++...+ +. +-+.+-.--+|+.- .++.++.|.++++.|. + -.+|+-+++.+.+..+
T Consensus 91 l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l--~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 91 APVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV--PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred CCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC--CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 357777777777765 21 11222222244432 3578899999999998 5 4789999887766544
No 226
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.79 E-value=2.1e+02 Score=21.91 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (211)
.+++++.++++.+++.|++.+.....-.+ ..+.+...-+..+ ++.|..= . -.+.+.+...+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~--~~~~i~~l~~~~~--~~~iGag--~----------v~~~~~~~~a~--- 73 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPG--ALEAIRALRKEFP--EALIGAG--T----------VLTPEQADAAI--- 73 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh--HHHHHHHHHHHCC--CCEEEEE--e----------CCCHHHHHHHH---
Confidence 46899999999999999999988766443 5555554444333 2332211 0 11344444433
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEec
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (211)
.+|.+++ |.|... .++.++ .++.|.---+|++ +.+++.++.+. ..+++++
T Consensus 74 --~~Ga~~i-----~~p~~~---~~~~~~---~~~~~~~~i~gv~--t~~e~~~A~~~-Gad~i~~ 123 (190)
T cd00452 74 --AAGAQFI-----VSPGLD---PEVVKA---ANRAGIPLLPGVA--TPTEIMQALEL-GADIVKL 123 (190)
T ss_pred --HcCCCEE-----EcCCCC---HHHHHH---HHHcCCcEECCcC--CHHHHHHHHHC-CCCEEEE
Confidence 3676654 555432 233333 3334555567888 56777777653 4456655
No 227
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=34.70 E-value=2.7e+02 Score=23.27 Aligned_cols=131 Identities=18% Similarity=0.110 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCcCCCc--HHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCC
Q 028240 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPYT--NEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g~--~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 106 (211)
+++...++.+.+.+.|+..|| +...+|.+. .-..+.+.++... .-++-|+.|+..... -
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~--------~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD--------D 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccc--------c
Confidence 678888888888888999999 333444321 2334555554321 123556666644321 1
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccCCceEE
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~ 182 (211)
+.+...+ +-+.|...| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++++++++.++....+-+
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgv 210 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGV 210 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEE
Confidence 2333333 445667777 688999987554332 46788888888886676666555 688888888776433333
No 228
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.69 E-value=2.9e+02 Score=23.54 Aligned_cols=148 Identities=7% Similarity=-0.002 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC-cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (211)
++++..+-.+.+++.|++.|=.-- |.. ......=+++++.-.+++-|..=... .++.+...+ +-+.
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN~----------~~~~~~A~~-~~~~ 204 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDANG----------AYSRKQALA-LARA 204 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECCC----------CCCHHHHHH-HHHH
Confidence 456666667777889999764321 111 11122223444322223333222211 123333222 2222
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--Ccc-cEEEeCCCCHHHHHHHhccCCceEEeccCCcccc-Cch
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKI-KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIE 194 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~ 194 (211)
|+. +++.++..|-+ .+-++.+.+|+++ -.+ -+.|=|-++...+.++++....+++|....-.-- ..-
T Consensus 205 l~~-----~~~~~~EeP~~----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~ 275 (352)
T cd03328 205 FAD-----EGVTWFEEPVS----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGF 275 (352)
T ss_pred HHH-----hCcchhhCCCC----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 333 34555555532 2346777788776 222 2556666899999999998889999998875321 123
Q ss_pred hhHHHHHHHcCCeee
Q 028240 195 NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~ 209 (211)
..+.+.|+.+|+.+.
T Consensus 276 ~~ia~~A~a~gi~~~ 290 (352)
T cd03328 276 LQAAALAAAHHVDLS 290 (352)
T ss_pred HHHHHHHHHcCCeec
Confidence 479999999999875
No 229
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=34.20 E-value=2.7e+02 Score=23.02 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCe----EeCCCCcCCCcHHHHHHHHHh---cCCCCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 44 GISIIKHAFSKGITF----FDTADKYGPYTNEILLGKALK---ELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~----~DtA~~Yg~g~~E~~lG~~l~---~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
..++++.|-+.|+.. -|.+..|.. ....+-+.++ +..-+.|.|.--+|.. +|..+.+-++
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d~~~~~r~--~~~~~~~~~~~~~~~G~~~i~l~DT~G~~-----------~P~~v~~l~~ 183 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLEDWSNGMRD--SPDYVFQLVDFLSDLPIKRIMLPDTLGIL-----------SPFETYTYIS 183 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEeCCCCCcC--CHHHHHHHHHHHHHcCCCEEEecCCCCCC-----------CHHHHHHHHH
Confidence 456666666777652 222212221 2333333332 2334556666555543 5666666666
Q ss_pred HHHhhc
Q 028240 117 ASLRRL 122 (211)
Q Consensus 117 ~sL~~L 122 (211)
...+++
T Consensus 184 ~l~~~~ 189 (280)
T cd07945 184 DMVKRY 189 (280)
T ss_pred HHHhhC
Confidence 666555
No 230
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=34.14 E-value=1.5e+02 Score=23.60 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=48.1
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC-CCHHHHHHHhccC-CceEEeccCCccccC
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQLEWSLWARD 192 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~~~~~~~ 192 (211)
+-+.|-.=|++-|.+=+ .. ....++++.+.+.+. =-.||..+ .++++++++...+ .|- ..++
T Consensus 30 ~a~Ali~gGi~~IEITl-~s----p~a~e~I~~l~~~~p---~~lIGAGTVL~~~q~~~a~~aGa~fi--------VsP~ 93 (211)
T COG0800 30 LAKALIEGGIPAIEITL-RT----PAALEAIRALAKEFP---EALIGAGTVLNPEQARQAIAAGAQFI--------VSPG 93 (211)
T ss_pred HHHHHHHcCCCeEEEec-CC----CCHHHHHHHHHHhCc---ccEEccccccCHHHHHHHHHcCCCEE--------ECCC
Confidence 33445555666655421 11 223345555555444 23678887 5899999998764 332 2334
Q ss_pred chhhHHHHHHHcCCeee
Q 028240 193 IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 193 ~~~~~~~~~~~~gi~v~ 209 (211)
.+.++++.|.++||.++
T Consensus 94 ~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 94 LNPEVAKAANRYGIPYI 110 (211)
T ss_pred CCHHHHHHHHhCCCccc
Confidence 45689999999999764
No 231
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=34.04 E-value=3.1e+02 Score=23.61 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEeCCCCHHHHHHHhccCCceEEe
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 183 (211)
.++.+...+ +-+.|.++|+++|++- +|... ++-++.++.+.+.+. .+-.+++..+.+.++.+.+.. ++.+.
T Consensus 18 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVE-IARKLDELGVDVIEAG---FPIAS---EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC---hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEEE
Confidence 345555444 4455999999999974 33221 233677777766554 455566677788888887753 33344
Q ss_pred ccCCc--c------ccC------chhhHHHHHHHcCCeee
Q 028240 184 LEWSL--W------ARD------IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 184 ~~~~~--~------~~~------~~~~~~~~~~~~gi~v~ 209 (211)
+.... . ... .-.+.+++|+++|..|.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 42222 1 111 11357788999997664
No 232
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.81 E-value=1.5e+02 Score=26.23 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=50.8
Q ss_pred HhhcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc--------CCceEEeccCCcc
Q 028240 119 LRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--------HPITAVQLEWSLW 189 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~~~~ 189 (211)
++.+|+.|. ++..|-. ... ..+-...+-+.|-...+|....+++++++.+.. .+|.+|-+ .+.-
T Consensus 7 ~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 355676653 3334432 121 334455566789999999999999888775532 24555543 2222
Q ss_pred ccCchhhHHHHHHHcCCeee
Q 028240 190 ARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~ 209 (211)
+...+.+.++.|.++||.++
T Consensus 80 ~~~~e~~~v~l~le~gV~~v 99 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVV 99 (418)
T ss_pred CchhHHHHHHHHHHcCCCEE
Confidence 22224568999999999765
No 233
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=33.64 E-value=2.7e+02 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHc--CcccEEEeCCCC
Q 028240 141 IEETIGEMKKLVEE--GKIKYIGLSEAS 166 (211)
Q Consensus 141 ~~~~~~~l~~l~~~--G~ir~iGvs~~~ 166 (211)
..+++++++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 34678889999988 888899999954
No 234
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=99 Score=22.30 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=26.1
Q ss_pred CHHHHHHHhccC-CceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 166 SPDTIRRAHAVH-PITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 166 ~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
+++.+++.++.. .+.++-+---.-.+-....+.+.|+..||++..|
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~M 102 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPM 102 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccc
Confidence 345555555543 3455544444333444557888888888887543
No 235
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=33.50 E-value=3e+02 Score=23.40 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=51.9
Q ss_pred HHHhhcCCCceeEEEeec-CCC-CCCHHHHHHHHHHHHHcCccc-EEEeCCC---CHHHHHHHhccCC---ceEEeccCC
Q 028240 117 ASLRRLDVEYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIK-YIGLSEA---SPDTIRRAHAVHP---ITAVQLEWS 187 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~ir-~iGvs~~---~~~~l~~~~~~~~---~~~~q~~~~ 187 (211)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+- .|.-|.. +++.+++.++.++ +-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 444688999988865332 321 123344444555554432333 3665643 7889988877642 3222222
Q ss_pred ccccCchhhHHHHHHHcCCeeeeC
Q 028240 188 LWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 188 ~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
. ..-+.+.+.|+++|..|++.
T Consensus 161 ~---en~~~i~~lA~~y~~~Vva~ 181 (319)
T PRK04452 161 E---DNYKKIAAAAMAYGHAVIAW 181 (319)
T ss_pred H---HHHHHHHHHHHHhCCeEEEE
Confidence 1 11346999999999998873
No 236
>PRK13753 dihydropteroate synthase; Provisional
Probab=33.46 E-value=2.8e+02 Score=23.06 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEe-ecCCCC-CCHH----HHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCce
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-VPIE----ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT 180 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~l-h~~~~~-~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 180 (211)
+.+.+.+.+++.+ .-|.|.||+=-- .+|... .+.+ -+...++.+++.+. .|.|-+++++.++++++.+. +
T Consensus 23 ~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGa-d 98 (279)
T PRK13753 23 DPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGV-G 98 (279)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCC-C
Confidence 5566666666644 457888888543 234322 2332 33467777777653 48999999999999998643 2
Q ss_pred EEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 181 AVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 181 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+ -+..+-++ ...+.+.|.+++++++-
T Consensus 99 i-INDVsg~~---d~~~~~vva~~~~~vVl 124 (279)
T PRK13753 99 Y-LNDIQGFP---DPALYPDIAEADCRLVV 124 (279)
T ss_pred E-EEeCCCCC---chHHHHHHHHcCCCEEE
Confidence 2 22333332 34678889899888764
No 237
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=33.19 E-value=1.4e+02 Score=24.62 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHc--CCeeee
Q 028240 145 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFV--RLAVKS 210 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~--gi~v~a 210 (211)
.++++++++.-.-+.||++.++.+++.++.+ ...+.+++. +++.. .-+++.+.+++. .+.++|
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~-~gaD~I~ld-~~~p~-~l~~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAE-AGADILQLD-KFSPE-ELAELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHH-cCCCEEEEC-CCCHH-HHHHHHHHHhccCCCceEEE
Confidence 4455555543222468888888888877764 334566654 22221 123455555543 355554
No 238
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=33.18 E-value=1.2e+02 Score=21.70 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHh
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (211)
+.+.+.+.+.+++.|+..+++.-++-.+-.++...+-....+..+++. +-+-.|++++|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~-------~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG-------IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT-------SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC-------CCeEEECHHHHhcCC
Confidence 447899999999999999998888888888876554344444433332 445556777777654
No 239
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=33.16 E-value=1.2e+02 Score=21.44 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=9.5
Q ss_pred hhHHHHHHHcCCeeee
Q 028240 195 NEIVPLCRFVRLAVKS 210 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~a 210 (211)
.++.++++++||++..
T Consensus 71 ~~~~~~l~~~gi~vev 86 (114)
T cd05125 71 PELRKYFKKLGIAVEV 86 (114)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3556666666666653
No 240
>PRK10060 RNase II stability modulator; Provisional
Probab=32.99 E-value=3.9e+02 Score=24.94 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCC--HHHHHHHhccCCceEEeccCCccc--------cCchhhHHHHHHHcCCeeee
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEAS--PDTIRRAHAVHPITAVQLEWSLWA--------RDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~q~~~~~~~--------~~~~~~~~~~~~~~gi~v~a 210 (211)
.+.+.+.+.+|++.|. .|++.+|. ..-+..+. ..+++.+-++-++.. +..-+.++..|+..|+.|+|
T Consensus 540 ~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L~-~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 540 EELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQLA-RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHH-hCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4567788999999998 66776664 23333332 245666666544332 22235689999999999987
No 241
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=32.90 E-value=99 Score=27.59 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 172 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 172 (211)
+.+...+.+.+.|+.||+++ |-+ ...+...+..-+++++|+++|++ |...|+ .+++++
T Consensus 49 s~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~ 106 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELEL 106 (445)
T ss_pred chHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHH
Confidence 56889999999999999974 732 22223345667889999999996 666654 444443
No 242
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.88 E-value=3.3e+02 Score=23.65 Aligned_cols=148 Identities=10% Similarity=-0.028 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
+.++..+.++.+++.|++.|=.--...+-......=+++++.-.+++-+..-... .++.+... +.+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~----------~w~~~~A~----~~~ 225 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANG----------RFDLETAI----AYA 225 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCC----------CCCHHHHH----HHH
Confidence 4566667777788999998643211000001112223344311223323222211 11333322 223
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCc----eEEeccCCcccc-Cc
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPI----TAVQLEWSLWAR-DI 193 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~~~~~~-~~ 193 (211)
+.|. .+++.++..|-+. +-++.+.+|++...+. +.|=|-++...+.++++.... +++|....-.-- ..
T Consensus 226 ~~l~--~~~~~~iEeP~~~----~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~ 299 (385)
T cd03326 226 KALA--PYGLRWYEEPGDP----LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPE 299 (385)
T ss_pred HHhh--CcCCCEEECCCCc----cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHH
Confidence 3332 2456677777543 2467777787775554 566667889999999887654 899988764221 12
Q ss_pred hhhHHHHHHHcCCe
Q 028240 194 ENEIVPLCRFVRLA 207 (211)
Q Consensus 194 ~~~~~~~~~~~gi~ 207 (211)
-..+.+.|+.+|+.
T Consensus 300 ~~kia~lA~a~gi~ 313 (385)
T cd03326 300 YLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHcCCC
Confidence 34799999999986
No 243
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.47 E-value=3.2e+02 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (211)
..+.++..++++...+.|+..++...
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45778899999999999999999764
No 244
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=32.39 E-value=2.9e+02 Score=22.86 Aligned_cols=150 Identities=12% Similarity=0.124 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHH--HHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHH
Q 028240 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILL--GKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (211)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~l--G~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (211)
.+...+.++...+.+..|+..++.-|.+..+..+ ...|++ +-.+-....+.-. +.+...+...+...
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~--~~g~~~i~Hltcr---------~~~~~~l~~~L~~~ 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN--VVGVETCMHLTCT---------NMPIEMIDDALERA 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH--hcCCCeeEEeccC---------CCCHHHHHHHHHHH
Confidence 3556677777778899999988765433344433 333332 1122233333221 22456666666555
Q ss_pred HhhcCCCceeEEEeec-CC--------CCCCHHHHHHHHHHHHHc-CcccEEEeCCCC--------HH-HHHHHhcc---
Q 028240 119 LRRLDVEYIDLYYQHR-VD--------TSVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------PD-TIRRAHAV--- 176 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~-~~--------~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~--------~~-~l~~~~~~--- 176 (211)
..+|++ +++.+-. +. ....++.+.+.++.+++. |.--+||+..+. .+ ++..+.+.
T Consensus 84 -~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~a 160 (281)
T TIGR00677 84 -YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDA 160 (281)
T ss_pred -HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHc
Confidence 777876 3444432 21 112244466666666664 444689988762 21 23333222
Q ss_pred -CCceEEeccCCccccCchhhHHHHHHHcCCe
Q 028240 177 -HPITAVQLEWSLWARDIENEIVPLCRFVRLA 207 (211)
Q Consensus 177 -~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 207 (211)
..+-+-|.-|+.- .-.+.++.|++.|+.
T Consensus 161 GA~f~iTQ~~Fd~~---~~~~f~~~~~~~gi~ 189 (281)
T TIGR00677 161 GADFIITQLFYDVD---NFLKFVNDCRAIGID 189 (281)
T ss_pred CCCEeeccceecHH---HHHHHHHHHHHcCCC
Confidence 3455556655542 224678889998654
No 245
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.97 E-value=3.3e+02 Score=23.38 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (211)
..+.++..++++...+.||..++.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3577899999999999999999997
No 246
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=31.94 E-value=2.7e+02 Score=22.43 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCC-CcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (211)
++++...+.+.++++|..|+=|+-.+.. |-..+.+ +.+++.-.. -+--|..... .+.+....-++..
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~--~vgvKaSGGI---------rt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGG--RVGVKASGGI---------RTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhcc--CceeeccCCc---------CCHHHHHHHHHHh
Confidence 5566789999999999999999985553 3333322 222221111 1333332111 2788899999999
Q ss_pred HhhcCCCc
Q 028240 119 LRRLDVEY 126 (211)
Q Consensus 119 L~~Lg~~~ 126 (211)
..|+|++.
T Consensus 206 a~RiGtSs 213 (228)
T COG0274 206 ATRIGTSS 213 (228)
T ss_pred HHHhcccc
Confidence 99999763
No 247
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.76 E-value=2.8e+02 Score=22.55 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=29.6
Q ss_pred HhhcCCCceeEEEeecCCCCCCHH---HHHHHHHHHHHcCcccEEEeCCCC
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIE---ETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~---~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
+.+.|++.-|+++=-........+ ++++.++.+++-|.=-.+|+||-+
T Consensus 157 ~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 157 LVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 456688766666522111111222 567777888887766689999976
No 248
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=31.64 E-value=3.9e+02 Score=24.16 Aligned_cols=100 Identities=9% Similarity=0.078 Sum_probs=54.4
Q ss_pred HHHHHHHHHhc----CCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH----
Q 028240 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI---- 141 (211)
Q Consensus 70 ~E~~lG~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~---- 141 (211)
+++.+-+++++ .+.+-++|.+-+. ++-|-+.++...+.++.+.++++.++.|......
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 66677777765 3334455555542 3334444455555555445789999888655432
Q ss_pred HHHHHHHHH-H----------HHcCcccEEEeCCC------CHHHHHHHhccCCceEEe
Q 028240 142 EETIGEMKK-L----------VEEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 142 ~~~~~~l~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q 183 (211)
+.+++++-+ + .+.+.|.-||.++. +...+.++++...+.++.
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 223332221 1 12355888888762 345666677665555543
No 249
>PRK00915 2-isopropylmalate synthase; Validated
Probab=31.60 E-value=4e+02 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (211)
..+.++..++.+...+.||..|+...
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 35678889999999999999999875
No 250
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.60 E-value=1.5e+02 Score=23.39 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcC
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKEL 81 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~ 81 (211)
.+.+++.++.++.++.|++.++....-.. +.+.+.+.-+++
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~--a~~~I~~l~~~~ 53 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPA--ALDAIRAVAAEV 53 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc--HHHHHHHHHHHC
Confidence 47899999999999999999998876443 666665544443
No 251
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.55 E-value=3.2e+02 Score=23.40 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=49.5
Q ss_pred ccCCChHHHHHHHHHHHhhcCC--CceeEEEeecC-CCCCCHHHHHHHHHHHHH-cCc---ccEEEeCCCC-HHHHHHHh
Q 028240 103 IVKGTPEYVRSCCEASLRRLDV--EYIDLYYQHRV-DTSVPIEETIGEMKKLVE-EGK---IKYIGLSEAS-PDTIRRAH 174 (211)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~Lg~--~~iDl~~lh~~-~~~~~~~~~~~~l~~l~~-~G~---ir~iGvs~~~-~~~l~~~~ 174 (211)
....+++.|.+++......+|+ ..++-+.+-.+ +|...++.++++++.+.+ .|. .|.+.+|+.. +..++++.
T Consensus 118 ~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~ 197 (343)
T PRK14468 118 GRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLA 197 (343)
T ss_pred CCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHH
Confidence 3567889999998877766654 34666666654 444557889999998844 443 2678888764 45566665
Q ss_pred cc
Q 028240 175 AV 176 (211)
Q Consensus 175 ~~ 176 (211)
+.
T Consensus 198 ~~ 199 (343)
T PRK14468 198 EE 199 (343)
T ss_pred Hh
Confidence 53
No 252
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=31.14 E-value=62 Score=28.53 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred CCcccccceeccccCCCCCCCCCCHHH----HHHHHHHHHHcCCC--eEeCCCCcC-CCc---HHHHHHHHHh------c
Q 028240 17 QGLEVSKLGYGCMSLSGCYNSPLSEED----GISIIKHAFSKGIT--FFDTADKYG-PYT---NEILLGKALK------E 80 (211)
Q Consensus 17 ~g~~vs~lg~G~~~~~~~~~~~~~~~~----~~~~l~~A~~~Gi~--~~DtA~~Yg-~g~---~E~~lG~~l~------~ 80 (211)
-|+...+|.||.=.+|-.-+...+.++ +.+++++.+++|++ |+||+-.-. ... -|.+.-++.+ +
T Consensus 78 ~g~~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~ 157 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIHLDCSMDCAGDPKPLPDETVAERAARLCEVAEE 157 (424)
T ss_dssp CT--GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEEE---C--CTS-SC--HHHHHHHHHHHHHHHHC
T ss_pred cCCchhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEeecCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 355566788888777743223345544 57888889999999 899986543 221 2333333332 1
Q ss_pred C------CCCcEEEEeccccccCCCcc--cccCCChHHHHHH---HHHHHhhcCCC
Q 028240 81 L------PRENIQVATKFGFVELGFTS--VIVKGTPEYVRSC---CEASLRRLDVE 125 (211)
Q Consensus 81 ~------~r~~~~i~tK~~~~~~~~~~--~~~~~s~~~i~~~---~~~sL~~Lg~~ 125 (211)
. ++--++|.|-+..+...... ...--+++..++. .++.+.+.|++
T Consensus 158 ~~~~~~~~~pvYvIGTEVPvPGGa~e~~~~l~vTs~ea~~~Ti~~h~~aF~~~GL~ 213 (424)
T PF08013_consen 158 AAKRRGGPPPVYVIGTEVPVPGGAQEALDGLAVTSPEAAEATIETHRKAFEAAGLE 213 (424)
T ss_dssp CS-HHHHHH-EEEEE-SS-----------------HHHHHHHHHHHHHHHHCCT-H
T ss_pred HHHhcCCCCceEEeCCccCCCCcccccccCCCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 1 12346788888544332110 0011144555444 44555665653
No 253
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=31.09 E-value=2.5e+02 Score=21.73 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe
Q 028240 39 LSEEDGISIIKHAFSKGITFFD 60 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~D 60 (211)
.+++++.++++.+++.|+...|
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 3778899999999999976443
No 254
>PRK05968 hypothetical protein; Provisional
Probab=30.82 E-value=2.6e+02 Score=24.11 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=30.9
Q ss_pred CCHHHHHHHhccCCceEEeccCCccccC-chhhHHHHHHHcCCeee
Q 028240 165 ASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~ 209 (211)
.+++.+++.+...+..+++.+.|+.-.. .-+.+.+.|+++|+.|+
T Consensus 136 ~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vi 181 (389)
T PRK05968 136 RDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTM 181 (389)
T ss_pred CCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEE
Confidence 3677777776555666677777764332 33568899999998765
No 255
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.24 E-value=3.1e+02 Score=24.37 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCeEeCCCCcC-CCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCC
Q 028240 46 SIIKHAFSKGITFFDTADKYG-PYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV 124 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg-~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~ 124 (211)
.++++++++|--+ ..=.|| +|.--..+.+.+...-...+.-.+-+. .+-+.+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------------~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------------SGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCCCc--eeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------------ccHHHHHHHHHHHHHHHhc
Confidence 5688888876431 122566 455666777777763333333322221 1568899999999888775
Q ss_pred CceeEEEe---ecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCH
Q 028240 125 EYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 125 ~~iDl~~l---h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
.+=-++++ |+.+- .+=++|--.++.|.|-.||.++-+|
T Consensus 103 gr~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCCC
Confidence 44445554 44432 4567888889999999999998664
No 256
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=30.03 E-value=1.1e+02 Score=23.60 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
+....++++.++-. ++++++....+..-.+-++.|.++..+|++|++-+--
T Consensus 65 de~~f~~~L~e~sn-------~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 65 DEQSFEDALLEASN-------DLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred CHHHHHHHHHHHhC-------ceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeee
Confidence 45556665555443 4555554444444567899999999999999875543
No 257
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=29.99 E-value=1e+02 Score=26.94 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcC-cccEEEeCCC---CHHHHHHHhccCC-ceEE---eccCCccccCchhhHHHHHHHcCCeee
Q 028240 141 IEETIGEMKKLVEEG-KIKYIGLSEA---SPDTIRRAHAVHP-ITAV---QLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir~iGvs~~---~~~~l~~~~~~~~-~~~~---q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
-..+++.++.|..+| .|.++.|... +.+++++++.-.. ..++ .++.-... +-.++-+.|+++|+.+.
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ--pI~ei~~i~k~~~i~fH 175 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ--PIAEIGEICKERGILFH 175 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecc--cHHHHHHHHHHcCCeEE
Confidence 447899999997778 8999999874 6788888876422 2222 22222222 24689999999997653
No 258
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.88 E-value=1.8e+02 Score=25.69 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC-----------------HHHHHHHHHHHHHcCcccEEEeCCCCHHH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-----------------IEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~-----------------~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 169 (211)
+.+.+-.-+.+....|... -|+|+-|+|+...+ -....+....|++.=.-+-+=+++-...+
T Consensus 134 TTe~v~~plle~~sgL~~~-~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAE 212 (436)
T COG0677 134 TTEEVVKPLLEERSGLKFG-EDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAE 212 (436)
T ss_pred cHHHHHHHHHhhcCCCccc-ceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHH
Confidence 4566666665554556544 79999999965332 12455666666665344466777777788
Q ss_pred HHHHhcc
Q 028240 170 IRRAHAV 176 (211)
Q Consensus 170 l~~~~~~ 176 (211)
+.++++.
T Consensus 213 m~Kl~EN 219 (436)
T COG0677 213 MVKLTEN 219 (436)
T ss_pred HHHHHhh
Confidence 8888775
No 259
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.88 E-value=2e+02 Score=20.17 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=28.2
Q ss_pred CceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEE-EeCCCCHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHH
Q 028240 125 EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI-GLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRF 203 (211)
Q Consensus 125 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i-Gvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 203 (211)
..+|+..+-.| .+.+.+.++++.+.| ++.+ =.+. ..++++.++|++
T Consensus 54 ~~iDlavv~~~-----~~~~~~~v~~~~~~g-~~~v~~~~g---------------------------~~~~~~~~~a~~ 100 (116)
T PF13380_consen 54 EPIDLAVVCVP-----PDKVPEIVDEAAALG-VKAVWLQPG---------------------------AESEELIEAARE 100 (116)
T ss_dssp ST-SEEEE-S------HHHHHHHHHHHHHHT--SEEEE-TT---------------------------S--HHHHHHHHH
T ss_pred CCCCEEEEEcC-----HHHHHHHHHHHHHcC-CCEEEEEcc---------------------------hHHHHHHHHHHH
Confidence 55677666555 346777777777776 3333 2222 224567788888
Q ss_pred cCCeee
Q 028240 204 VRLAVK 209 (211)
Q Consensus 204 ~gi~v~ 209 (211)
+|+.++
T Consensus 101 ~gi~vi 106 (116)
T PF13380_consen 101 AGIRVI 106 (116)
T ss_dssp TT-EEE
T ss_pred cCCEEE
Confidence 887776
No 260
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=29.73 E-value=3.5e+02 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEee
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQH 133 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh 133 (211)
+.+.+.+.++.. ..|+.+++.++.+.
T Consensus 334 t~ed~~~tl~~l-~~L~pd~isv~~L~ 359 (488)
T PRK08207 334 GLEEVKHTLEEI-EKLNPESLTVHTLA 359 (488)
T ss_pred CHHHHHHHHHHH-HhcCcCEEEEEece
Confidence 678888888875 56888888888775
No 261
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=29.65 E-value=4.7e+02 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeC
Q 028240 37 SPLSEEDGISIIKHAFSKGITFFDT 61 (211)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~Dt 61 (211)
.....++...+....-+.|+..+++
T Consensus 22 tr~~~~d~l~ia~~ld~~G~~siE~ 46 (593)
T PRK14040 22 TRLRLDDMLPIAAKLDKVGYWSLES 46 (593)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEe
Confidence 3567788888888888999999988
No 262
>PF12728 HTH_17: Helix-turn-helix domain
Probab=29.59 E-value=1.1e+02 Score=17.61 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCcccEEEeCC---CCHHHHHHHhc
Q 028240 145 IGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHA 175 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~ 175 (211)
-.++.++.++|.+..+++.. ++.+.+++.++
T Consensus 15 ~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 15 RSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred HHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 34577888899998888654 56777777654
No 263
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=29.56 E-value=1.2e+02 Score=21.85 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHH
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 173 (211)
+.+++.|.+.+++.|+..+...-++-.+..++...+-..++++.++|. +-+-.|+.++|+..
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg-------~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHG-------WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhC-------CCeEEeCHHHHHhc
Confidence 347899999999999999987777777777765544334444444441 22333455665543
No 264
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=29.48 E-value=86 Score=20.90 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCC
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHP 178 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 178 (211)
++.+-...+.....||.+..|+..+..-.+..-.+.+.+.|..+++.. | .+.+.+.|.+++..+.
T Consensus 9 a~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~aL~~~~ 73 (83)
T cd08319 9 AQRLGPEWEQVLLDLGLSQTDIYRCKENHPHNVQSQIVEALVKWRQRF-----G-KKATVQSLIQSLKAVE 73 (83)
T ss_pred HHHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-----C-CCCcHHHHHHHHHHcC
Confidence 345666788888999999999988866434333467888999998863 2 3556777777776543
No 265
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.41 E-value=2.6e+02 Score=24.03 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH-cCc---ccEEEeCCCC-HHHHHHHhc
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGK---IKYIGLSEAS-PDTIRRAHA 175 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvs~~~-~~~l~~~~~ 175 (211)
...+.+.|.+++....+..+++++ .+.-.=+|...+++++++++.+.+ .|. .+.+-||+.. .+.+.++..
T Consensus 129 r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 129 RNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhh
Confidence 446889999998887766665443 332222344456789999999886 565 4788887754 345555544
No 266
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=29.36 E-value=1.3e+02 Score=28.42 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=75.2
Q ss_pred HcCCCeEeC--CCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEE
Q 028240 53 SKGITFFDT--ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLY 130 (211)
Q Consensus 53 ~~Gi~~~Dt--A~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~ 130 (211)
+.|+...|. .+.|| +++-+-+.++......+.|..-+-+....++ ++ +..+... .-+|-|+|
T Consensus 112 D~gyDi~d~~Idp~~G---T~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~g-------hd-----F~lAr~~-~~~Y~g~Y 175 (688)
T TIGR02455 112 DGNFDRISFDIDPLLG---SEEELIQLSRMAAAHNAITIDDIIPAHTGKG-------AD-----FRLAELA-HGDYPGLY 175 (688)
T ss_pred CCCCCcccCccCcccC---CHHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-------cc-----hHHHhhc-CCCCCCce
Confidence 455555444 56666 6666666665533445555555544322211 11 3333444 45899999
Q ss_pred Ee-e--------cCCCCCC---HHHHHHHHHHHHHcCcccE---------EEe--CCCCHH--------HHHHHhccCCc
Q 028240 131 YQ-H--------RVDTSVP---IEETIGEMKKLVEEGKIKY---------IGL--SEASPD--------TIRRAHAVHPI 179 (211)
Q Consensus 131 ~l-h--------~~~~~~~---~~~~~~~l~~l~~~G~ir~---------iGv--s~~~~~--------~l~~~~~~~~~ 179 (211)
-+ . ||+.... ..-.-.+...|+++|.|-+ .|+ |||+.. ..++..-.+.|
T Consensus 176 ~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F 255 (688)
T TIGR02455 176 HMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYF 255 (688)
T ss_pred eeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhc
Confidence 21 1 3332221 1122455677888887653 232 467766 55665555666
Q ss_pred eEEeccCCccccC--chhhHH----HHHHHcCCe
Q 028240 180 TAVQLEWSLWARD--IENEIV----PLCRFVRLA 207 (211)
Q Consensus 180 ~~~q~~~~~~~~~--~~~~~~----~~~~~~gi~ 207 (211)
-.-|-..|..++. ..+.++ .+-.+.|+.
T Consensus 256 ~~~QPdLNw~dPs~av~~~~~gdal~~w~~lG~~ 289 (688)
T TIGR02455 256 KEGQPSLNWLDPTFAAQQLIIGDALHAIDCLGAR 289 (688)
T ss_pred cCCCCccCccCccHHHHHHHHHHHHHHHHHhccc
Confidence 6678888888887 444444 355555543
No 267
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=29.18 E-value=1.9e+02 Score=20.56 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=26.7
Q ss_pred eCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHcCCeeeeC
Q 028240 162 LSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 162 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~a~ 211 (211)
+...+++.++++++.. |+++-+---.-.+ ....++++++++.||+|+.|
T Consensus 43 ~~~l~~~~l~~ll~~~-peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m 92 (117)
T cd05126 43 SHGLQPEELEELLEEG-VEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVL 92 (117)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEc
Confidence 3345667777776543 3443332221111 12346777888888888753
No 268
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.72 E-value=3.6e+02 Score=22.78 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCcCCC--cHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCC
Q 028240 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g--~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 106 (211)
++++..++.+.+.+.|+..+| +...||.. ..-+.+.+.++... .-++-|+.|+....... -
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~------~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL------D 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc------c
Confidence 678888888888889999999 44455532 12223444444321 12456888875432110 0
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCC---------HHHHHHHHHHHHHcC-cccEEEeCC-CCHHHHHHHh
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVP---------IEETIGEMKKLVEEG-KIKYIGLSE-ASPDTIRRAH 174 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-~~~---------~~~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~ 174 (211)
+.+.. ..+-+.+...| +|.+.+|.-.. ... ..--|+...++++.- .|--||..+ ++.+++.+.+
T Consensus 139 ~~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 11222 23344555666 56778897642 000 012477788888764 677788766 6778887776
Q ss_pred c
Q 028240 175 A 175 (211)
Q Consensus 175 ~ 175 (211)
+
T Consensus 215 ~ 215 (318)
T TIGR00742 215 S 215 (318)
T ss_pred h
Confidence 4
No 269
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.40 E-value=4.1e+02 Score=23.36 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
++++..+..+.+++.|++.|=.--.-.. ......=+++++.-.+++.+..-... .++.+...+ .+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~d~~~v~avRe~vG~~~~L~vDaN~----------~w~~~~A~~----~~ 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADL-EDDIRRCRLAREVIGPDNKLMIDANQ----------RWDVPEAIE----WV 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCH-HHHHHHHHHHHHhcCCCCeEEEECCC----------CCCHHHHHH----HH
Confidence 4566667777888899997643211010 01112223444322233333332221 124443322 22
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC----cccEEEeCCCCHHHHHHHhccCCceEEeccCCcccc-Cch
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG----KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIE 194 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~ 194 (211)
++|. -.++.++..|-+. +-++.+.+|++.. .=-+.|=|.++...+.++++....+++|....-.-- ...
T Consensus 261 ~~L~--~~~l~~iEEP~~~----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSP----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCC----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3332 2355666766443 2456666666653 323445556788899999988888999998775321 123
Q ss_pred hhHHHHHHHcCCeee
Q 028240 195 NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~ 209 (211)
..+...|+.+|+.+.
T Consensus 335 ~kia~lA~a~gi~~~ 349 (415)
T cd03324 335 LAVLLMAAKFGVPVC 349 (415)
T ss_pred HHHHHHHHHcCCeEE
Confidence 478999999999874
No 270
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=28.21 E-value=2.3e+02 Score=25.35 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc-------CC-ceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 145 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-------HP-ITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
-+-...+-+.|-...+|....+++++++.+.. .+ |.+|-+ .+.-+...+..+++.|-++|+.++
T Consensus 33 ~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~v 104 (444)
T TIGR02814 33 AELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIV 104 (444)
T ss_pred HHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEE
Confidence 34455666789999999988999988876542 13 555543 222222234568899999999765
No 271
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.15 E-value=3.6e+02 Score=22.64 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCC--CcHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCCChHHHHHH
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (211)
..+.++..++++.+.+.|+..+--+..=.- -.-.+++. .+++.+ -.++.|+|-.. .+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~-~i~~~~~l~~i~itTNG~----------------ll~~- 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVA-RLGKLPGLEELSLTTNGS----------------RLAR- 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHH-HHHhCCCCceEEEEeChh----------------HHHH-
Confidence 357789999999999999988765421000 01222232 233222 12444554421 1222
Q ss_pred HHHHHhhcCCCceeEEEeecCCCC--------CCHHHHHHHHHHHHHcCc----ccEEEeCCCCHHHHHHHhcc
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV 176 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~ 176 (211)
.-+.|...|++++.+ -++.+++. ..++.+++.++.+++.|. +..+.+...+.+++.++++.
T Consensus 106 ~~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~ 178 (329)
T PRK13361 106 FAAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEF 178 (329)
T ss_pred HHHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHH
Confidence 334566677777653 44554332 247789999999999986 23444455677777666543
No 272
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=28.12 E-value=35 Score=32.25 Aligned_cols=77 Identities=16% Similarity=0.060 Sum_probs=46.3
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCCccccCch
Q 028240 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE 194 (211)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 194 (211)
+-.-|+.||+.+|.|+=+|......... +.|+.-++|=+..+.=.++....+.+ . +..+-.+
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~----------~~gl~n~WGYdP~~fFAp~~~Yss~p-------~-p~~~i~E 266 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLD----------KSGLNNNWGYDPLNFFAPEGRYASNP-------E-PATRIKE 266 (697)
T ss_pred HHHHHHHhCCceEEEecceEEecccccc----------ccccccccCCCcccccCCCccccCCC-------C-cchHHHH
Confidence 3567899999999999877765433222 66777777766533211111111111 1 1122212
Q ss_pred -hhHHHHHHHcCCeee
Q 028240 195 -NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 -~~~~~~~~~~gi~v~ 209 (211)
+.++..+++.||+||
T Consensus 267 fK~mV~~lHkaGI~VI 282 (697)
T COG1523 267 FKDMVKALHKAGIEVI 282 (697)
T ss_pred HHHHHHHHHHcCCEEE
Confidence 568999999999997
No 273
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=28.02 E-value=43 Score=24.49 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCCeEeCCCCc
Q 028240 46 SIIKHAFSKGITFFDTADKY 65 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y 65 (211)
.-+...++.|+|+||---.+
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~ 49 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWD 49 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEc
Confidence 45889999999999954333
No 274
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=28.01 E-value=3.9e+02 Score=23.00 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=47.1
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc-CCceEEeccCCccccC-chhhHHHHHHHcC
Q 028240 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARD-IENEIVPLCRFVR 205 (211)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~~~~~~~~g 205 (211)
|-+++-.|.. ......+..+...+.++-.-+...+.+.+++++.. .+..++..+-|+.-+- .-+.+.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 4455544432 33455555555555555555555678888887743 4555566666653332 2357999999999
Q ss_pred Ceee
Q 028240 206 LAVK 209 (211)
Q Consensus 206 i~v~ 209 (211)
+-|+
T Consensus 167 ~~vv 170 (382)
T TIGR02080 167 AVVV 170 (382)
T ss_pred CEEE
Confidence 8765
No 275
>TIGR03586 PseI pseudaminic acid synthase.
Probab=27.99 E-value=3.8e+02 Score=22.83 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHH-----------------HhcC--CCCcEEEEeccccccCCC
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA-----------------LKEL--PRENIQVATKFGFVELGF 99 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~-----------------l~~~--~r~~~~i~tK~~~~~~~~ 99 (211)
.+.+.-.++.+++-+.|+.++=|...-. +-..+-+. |+.+ ....+++.|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~------- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDET---AVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI------- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHH---HHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-------
Confidence 4567777888999999999987765432 11122111 0000 11223322222
Q ss_pred cccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC-CHH-HHHHHHHHHHHcCcccEEEeCCCCHHHHHH--Hhc
Q 028240 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIE-ETIGEMKKLVEEGKIKYIGLSEASPDTIRR--AHA 175 (211)
Q Consensus 100 ~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-~~~-~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~--~~~ 175 (211)
.+.+.+..+++...+. |. -++.++|+..... +.+ --+.++..|++.=. .-||+|.|+...... ++.
T Consensus 144 ------~t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva 213 (327)
T TIGR03586 144 ------ATLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA 213 (327)
T ss_pred ------CCHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH
Confidence 1678888888887643 43 3789999875432 222 34667777776543 469999987654322 222
Q ss_pred cCCceEEeccCCc
Q 028240 176 VHPITAVQLEWSL 188 (211)
Q Consensus 176 ~~~~~~~q~~~~~ 188 (211)
.+ ..++.-++.+
T Consensus 214 ~G-A~iIEkH~tl 225 (327)
T TIGR03586 214 LG-ACVIEKHFTL 225 (327)
T ss_pred cC-CCEEEeCCCh
Confidence 22 2355555554
No 276
>COG1679 Predicted aconitase [General function prediction only]
Probab=27.83 E-value=4.2e+02 Score=23.23 Aligned_cols=107 Identities=14% Similarity=-0.061 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCC----CcccccCCChHHHHHHHHHHH
Q 028240 44 GISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG----FTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~----~~~~~~~~s~~~i~~~~~~sL 119 (211)
.--++=.+..-||.+|.-+.. .+..+-+.+|.++....---++....+.+.... +.......+.+.+.+..++.-
T Consensus 206 lGy~~G~~~~d~IP~~~~~~~-p~~d~lKalgAA~atsgavam~HvegvTPE~~~~~~~d~~e~i~i~~~d~~da~~~l~ 284 (403)
T COG1679 206 LGYLAGEAAGDGIPYFRLALF-PSEDELKALGAAMATSGAVAMYHVEGVTPEARALAFGDKAEKIEIEREDIDDAWERLN 284 (403)
T ss_pred HHHHHHHhccCCCCeeccCCC-CCHHHHHHHHHHHhhcCceeEEEecCCCcccccccccccCceeeeeHHHHHHHHHHhh
Confidence 345566777889999984432 333355578888876444456666666554321 111111234444554444433
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 155 (211)
.+-+-+|++.+-+| ..+.+++...++-|+..+
T Consensus 285 --~~~~epdli~iGcP--HaS~~E~~~la~~l~~r~ 316 (403)
T COG1679 285 --TADGEPDLIALGCP--HASLEELRRLAELLKGRK 316 (403)
T ss_pred --cCCCCCCEEEeCCC--CCCHHHHHHHHHHHhccC
Confidence 45557899999998 455777777777777776
No 277
>PLN02775 Probable dihydrodipicolinate reductase
Probab=27.80 E-value=3.6e+02 Score=22.54 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCC-ceEEeccCCc
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSL 188 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~ 188 (211)
.+++.|..+..++.|++++..-. .+.+.+.++.+.+.|+--=+|.+.|+.++++++.+... +.++-.+|++
T Consensus 67 dl~~~l~~~~~~~~~~VvIDFT~----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVDYTL----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred cHHHHHHHhhccCCCEEEEECCC----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 34455544444577866665533 45688889999999998889999999998887766433 3334444443
No 278
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=27.53 E-value=1e+02 Score=25.64 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCC--eEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhc
Q 028240 45 ISIIKHAFSKGIT--FFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL 122 (211)
Q Consensus 45 ~~~l~~A~~~Gi~--~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L 122 (211)
.++|..|.+.|+- -|++.+.- ..+.++..+ .+ .+..++|..--+.... ...+.+...+....++.
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e---~~~avi~AA-e~-~~sPvIi~~~~~~~~~--------~~~~~~~~~~~~~a~~~ 68 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLE---TLKAILEAA-EE-TRSPVILQISEGAIKY--------AGLELLVAMVKAAAERA 68 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHH---HHHHHHHHH-HH-hCCCEEEEcCcchhhh--------CCHHHHHHHHHHHHHHC
Confidence 3577777777654 24433211 122233222 22 3556776664332111 13466777777777777
Q ss_pred CCCceeEEEeecCCCCCCHHHHHHHH
Q 028240 123 DVEYIDLYYQHRVDTSVPIEETIGEM 148 (211)
Q Consensus 123 g~~~iDl~~lh~~~~~~~~~~~~~~l 148 (211)
.+. +.+|- |...+++.+.+++
T Consensus 69 ~VP----V~lHL-DH~~~~~~i~~ai 89 (276)
T cd00947 69 SVP----VALHL-DHGSSFELIKRAI 89 (276)
T ss_pred CCC----EEEEC-CCCCCHHHHHHHH
Confidence 654 33343 2333445555443
No 279
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.48 E-value=3.1e+02 Score=23.52 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=46.6
Q ss_pred cccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc-C---cccEEEeCCCCH-HHHHHHhc
Q 028240 102 VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE-G---KIKYIGLSEASP-DTIRRAHA 175 (211)
Q Consensus 102 ~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G---~ir~iGvs~~~~-~~l~~~~~ 175 (211)
...+.+..+|..++-..-+.++.....++++--=+|-..++.++++++.+.+. | .-+.|-||+... ..+.++.+
T Consensus 129 ~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 129 FQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred ccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHh
Confidence 33566888999888776565554433444433223344467889999988775 2 456888888654 45656553
No 280
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=27.46 E-value=72 Score=21.37 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCcccEEEeCCC
Q 028240 142 EETIGEMKKLVEEGKIKYIGLSEA 165 (211)
Q Consensus 142 ~~~~~~l~~l~~~G~ir~iGvs~~ 165 (211)
+...+.+..|+++|.|.-+-+...
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 678899999999999998877665
No 281
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=27.45 E-value=3e+02 Score=23.65 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=46.5
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEEeC--CCCHHHHHH---HhccCCceEEeccCCcc
Q 028240 130 YYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLS--EASPDTIRR---AHAVHPITAVQLEWSLW 189 (211)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~---~~~~~~~~~~q~~~~~~ 189 (211)
+-||.+++. .+++++++++.++.+ .|. ++++=+. |.+.+++++ ++...++.++-++||.+
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 678988642 236788888887654 342 3344333 334455544 44444567788899975
Q ss_pred ccC----ch-h---hHHHHHHHcCCeee
Q 028240 190 ARD----IE-N---EIVPLCRFVRLAVK 209 (211)
Q Consensus 190 ~~~----~~-~---~~~~~~~~~gi~v~ 209 (211)
... +. + ...++.+++|+.|.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~ 326 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVT 326 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 431 11 1 24556677788764
No 282
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=27.41 E-value=3.4e+02 Score=22.80 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC---------CCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTA---------DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPE 109 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA---------~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~ 109 (211)
.-+++..++|....+.=.-++|-. .--..||.-...-++.+......+-|++.+=..-. .-+++
T Consensus 126 Clpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLP-------gE~~~ 198 (312)
T COG1242 126 CLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLP-------GETRD 198 (312)
T ss_pred CCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCC-------CCCHH
Confidence 345777777777665511123311 11112333333334443322236778887732111 12678
Q ss_pred HHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCC
Q 028240 110 YVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWS 187 (211)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~ 187 (211)
.+.+.++ .+..++++-|-+..||-.... .|+++..+|..+.+-.-.+ .+.+.++++..+|.++-...+
T Consensus 199 ~mleTak-~v~~~~v~GIKlH~LhvvkgT--------~m~k~Y~~G~l~~ls~eeY-v~~~~d~le~lpp~vviHRit 266 (312)
T COG1242 199 EMLETAK-IVAELGVDGIKLHPLHVVKGT--------PMEKMYEKGRLKFLSLEEY-VELVCDQLEHLPPEVVIHRIT 266 (312)
T ss_pred HHHHHHH-HHHhcCCceEEEEEEEEecCC--------hHHHHHHcCCceeccHHHH-HHHHHHHHHhCCcceEEEEec
Confidence 8888888 788999999999999998642 3667777898887655443 344555667667766655444
No 283
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=27.31 E-value=4e+02 Score=22.85 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=58.2
Q ss_pred CcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHH
Q 028240 64 KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE 143 (211)
Q Consensus 64 ~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~ 143 (211)
.||.| +-+.+++.+++...++++|.|--... .....+.+.++|+.-|++ ...+....++...+.
T Consensus 8 ~~G~g-~l~~l~~~l~~~g~~~~lvvt~~~~~------------~~g~~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~ 71 (374)
T cd08189 8 FVGSG-SLAQLPAAISQLGVKKVLIVTDKGLV------------KLGLLDKVLEALEGAGIE---YAVYDGVPPDPTIEN 71 (374)
T ss_pred EECcC-HHHHHHHHHHhcCCCeEEEEeCcchh------------hcccHHHHHHHHHhcCCe---EEEeCCCCCCcCHHH
Confidence 35655 55668888887654566666532221 112344577777777754 344455555566777
Q ss_pred HHHHHHHHHHcCcccEEEeCCCCHHHHHHHh
Q 028240 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (211)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (211)
+-++++.+++.+-=--||+..-+.-.+.+++
T Consensus 72 v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~i 102 (374)
T cd08189 72 VEAGLALYRENGCDAILAVGGGSVIDCAKAI 102 (374)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccHHHHHHHH
Confidence 7778888887766556677776665555543
No 284
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=27.31 E-value=2.1e+02 Score=22.46 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP 82 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~ 82 (211)
.+.+++.++++++++.|++.++....-.+ +++.+...-++++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~--~~~~i~~l~~~~~ 60 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD--PFDSIAALVKALG 60 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc--HHHHHHHHHHHcC
Confidence 47899999999999999999997754433 6666655555443
No 285
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=27.23 E-value=93 Score=25.93 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhhcCCCce--eEEEeecCCCCCCHHHHHHHHHHHHHcCcccE
Q 028240 108 PEYVRSCCEASLRRLDVEYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~i--Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (211)
.+...+.+.+.+++||+..- ..+.-+.+ ...+.+++.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 46678889999999998532 22222222 234578999999999999865
No 286
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.22 E-value=1.5e+02 Score=28.93 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCc--eeEEEeecCCCCCCH---HHHHHHHHHHHHcCcccEEEeCCCCHHH
Q 028240 113 SCCEASLRRLDVEY--IDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEASPDT 169 (211)
Q Consensus 113 ~~~~~sL~~Lg~~~--iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 169 (211)
=++.-+|..+=..+ ++++++.-|....+. +.++++|+.+... ++.|||-+|..+-
T Consensus 826 LalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel 885 (908)
T COG0419 826 LALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEEL 885 (908)
T ss_pred HHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHH
Confidence 34555666664455 999999999887764 4788888888888 8899999997443
No 287
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.11 E-value=3.5e+02 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=21.0
Q ss_pred HHHHHHcCcccEEEeCCCCHHHHHHHhcc
Q 028240 148 MKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (211)
Q Consensus 148 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 176 (211)
++.+++.|.-+.+=+|+|+++.+..+...
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~ 184 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLK 184 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhh
Confidence 44445557778899999999987766443
No 288
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.07 E-value=4.2e+02 Score=22.97 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeCC-------------------CCcCCCcHHH---HH---HHHHhcCCCCc
Q 028240 38 PLSEEDGISII-------KHAFSKGITFFDTA-------------------DKYGPYTNEI---LL---GKALKELPREN 85 (211)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~DtA-------------------~~Yg~g~~E~---~l---G~~l~~~~r~~ 85 (211)
..++++..+++ +.|.++|+.-++.- +.||. .-|. ++ =+++++.-.++
T Consensus 138 ~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGG-SlENR~Rf~~EVv~aVr~~vg~~ 216 (363)
T COG1902 138 ELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGG-SLENRARFLLEVVDAVREAVGAD 216 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCC-cHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566655544 56778999977632 33442 2232 11 22233333556
Q ss_pred EEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcC-CCceeEEEeecCC-CCC--C-HHHHHHHHHHHHHcCcccEE
Q 028240 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVD-TSV--P-IEETIGEMKKLVEEGKIKYI 160 (211)
Q Consensus 86 ~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg-~~~iDl~~lh~~~-~~~--~-~~~~~~~l~~l~~~G~ir~i 160 (211)
+.|.-++.+.....+ ...+.+. ...+-+.|+..| ++||++.--+... ... . ..-.....+.+++...+--+
T Consensus 217 ~~vg~Rls~~d~~~~---~g~~~~e-~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi 292 (363)
T COG1902 217 FPVGVRLSPDDFFDG---GGLTIEE-AVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVI 292 (363)
T ss_pred ceEEEEECccccCCC---CCCCHHH-HHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEE
Confidence 678888876544111 0112222 345667788889 7999988766531 111 1 12334445556666667777
Q ss_pred EeCC-CCHHHHHHHhccCCceEE
Q 028240 161 GLSE-ASPDTIRRAHAVHPITAV 182 (211)
Q Consensus 161 Gvs~-~~~~~l~~~~~~~~~~~~ 182 (211)
.+.. +++++.+++++....+.+
T Consensus 293 ~~G~i~~~~~Ae~~l~~g~aDlV 315 (363)
T COG1902 293 AVGGINDPEQAEEILASGRADLV 315 (363)
T ss_pred EeCCCCCHHHHHHHHHcCCCCEE
Confidence 7774 788999998887654444
No 289
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=27.00 E-value=4e+02 Score=22.75 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=55.1
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHcC
Q 028240 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFVR 205 (211)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~g 205 (211)
++.++..|-+. +-++.+.+|++...+. +.|=|-++..++.+++.....+++|+.....-. ..-..+...|+.+|
T Consensus 214 ~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~g 289 (368)
T TIGR02534 214 GVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAG 289 (368)
T ss_pred ChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcC
Confidence 45566666433 2366677777776555 677777899999999888888899987775321 11246899999999
Q ss_pred Ceee
Q 028240 206 LAVK 209 (211)
Q Consensus 206 i~v~ 209 (211)
+.+.
T Consensus 290 i~~~ 293 (368)
T TIGR02534 290 IALY 293 (368)
T ss_pred Ccee
Confidence 9875
No 290
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.94 E-value=3.6e+02 Score=24.85 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceE
Q 028240 137 TSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITA 181 (211)
Q Consensus 137 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 181 (211)
...+.+++.+.+.+.++..+|+.+|+-.+...++..+++...+.+
T Consensus 408 ~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~l 452 (546)
T COG4626 408 DLIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKV 452 (546)
T ss_pred CccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCce
Confidence 345577899999999999999999999999999988887765443
No 291
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=26.91 E-value=3.1e+02 Score=21.37 Aligned_cols=134 Identities=13% Similarity=0.038 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCcCCC--cHHHHHHHHHhcCCC-CcEEEEeccccccCCCcccccCC
Q 028240 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPY--TNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKG 106 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g--~~E~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~ 106 (211)
++++..+..+.+.++|+..+|-- +.||.. ..-+.+-+.++.+.. -.+-|..|+.....
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------- 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------- 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC---------
Confidence 56888888899999999998852 345521 123344444444211 11445666542210
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCC--CHHHHHHHHHHHHHcCcccEEEeCCC-CHHHHHHHhccCCceEEe
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQ 183 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 183 (211)
..+...+ +-+.|+..|++ .+.+|...... .....|+.+.++++.-.+.-++.... +.+++.++++....+.++
T Consensus 136 ~~~~~~~-~~~~l~~~Gvd---~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 136 DEEETLE-LAKALEDAGAS---ALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred CchHHHH-HHHHHHHhCCC---EEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 0112222 23345556764 45567653211 11235777788888777777776664 788899988876667776
Q ss_pred ccC
Q 028240 184 LEW 186 (211)
Q Consensus 184 ~~~ 186 (211)
+--
T Consensus 212 igr 214 (231)
T cd02801 212 IGR 214 (231)
T ss_pred EcH
Confidence 643
No 292
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=26.56 E-value=76 Score=22.11 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCHHHHHHHhcc-CCceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
.+.+.+..+... .+|+++-+-----......++.++++++||+|..|
T Consensus 39 l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 39 LTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp EETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred CCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 345677776665 34555433222112223467899999999988753
No 293
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.43 E-value=4.2e+02 Score=22.86 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=59.8
Q ss_pred CcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHH
Q 028240 64 KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE 143 (211)
Q Consensus 64 ~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~ 143 (211)
.+|.| +-..+++.+++...++++|.|--+.. ...+.+.+.++|+.-|++ ...+....++.+.+.
T Consensus 13 ~~G~g-~~~~l~~~~~~~g~~~~livt~~~~~------------~~g~~~~v~~~L~~~~i~---~~~f~~v~~np~~~~ 76 (383)
T PRK09860 13 VIGAD-SLTDAMNMMADYGFTRTLIVTDNMLT------------KLGMAGDVQKALEERNIF---SVIYDGTQPNPTTEN 76 (383)
T ss_pred EECcC-HHHHHHHHHHhcCCCEEEEEcCcchh------------hCccHHHHHHHHHHcCCe---EEEeCCCCCCcCHHH
Confidence 35655 55567888887655667766632221 112444677777777754 345555555566777
Q ss_pred HHHHHHHHHHcCcccEEEeCCCCHHHHHHHhc
Q 028240 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (211)
+-++.+..++.+-=-=||+..-++-...+++.
T Consensus 77 v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia 108 (383)
T PRK09860 77 VAAGLKLLKENNCDSVISLGGGSPHDCAKGIA 108 (383)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence 77777777777555566888877766666543
No 294
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=26.41 E-value=4e+02 Score=22.55 Aligned_cols=97 Identities=12% Similarity=0.010 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCC------CcHHHH----------HHHHHhc-CC-CCcEEEEeccccccCCCc
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGP------YTNEIL----------LGKALKE-LP-RENIQVATKFGFVELGFT 100 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------g~~E~~----------lG~~l~~-~~-r~~~~i~tK~~~~~~~~~ 100 (211)
+.++...++=++.+++|-..+.|=-.-+. ..-|.. +.+.... .. +++.||.--+++.....+
T Consensus 50 T~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~ 129 (311)
T COG0646 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLS 129 (311)
T ss_pred CCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCC
Confidence 35677777778888999999998643221 112221 1111111 11 147788888887654221
Q ss_pred ccc-cCCChHHHHHHHHHHHhhcCCCceeEEEeecC
Q 028240 101 SVI-VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV 135 (211)
Q Consensus 101 ~~~-~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~ 135 (211)
..+ +..+.+.+.++..++.+-|=-.=.|++++.-.
T Consensus 130 ~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~ 165 (311)
T COG0646 130 ISPDFAVTFDELVEAYREQVEGLIDGGADLILIETI 165 (311)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehh
Confidence 111 15688999999999988885556899998755
No 295
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=26.38 E-value=3.4e+02 Score=21.70 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC
Q 028240 40 SEEDGISIIKHAFSKGITFFDTA 62 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA 62 (211)
.+|.....+++|++.|...+++-
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~D 42 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEFD 42 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEEE
Confidence 46888899999999999988743
No 296
>PRK10508 hypothetical protein; Provisional
Probab=26.26 E-value=1.9e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE 153 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 153 (211)
-.+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++.|.+
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla~ 328 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAMD 328 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHHH
Confidence 35899999999999999999886 333332 355566666665544
No 297
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=26.12 E-value=1.9e+02 Score=20.50 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHcC
Q 028240 143 ETIGEMKKLVEEG 155 (211)
Q Consensus 143 ~~~~~l~~l~~~G 155 (211)
+..+.+++|.+.|
T Consensus 60 ~~~~~i~~L~~~~ 72 (123)
T PF07905_consen 60 ELREFIRELAEKG 72 (123)
T ss_pred HHHHHHHHHHHCC
Confidence 3555555555553
No 298
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=26.12 E-value=1.7e+02 Score=21.48 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=22.9
Q ss_pred ccEEEeCCCCHHHHHHHhccCCceEEeccCC-ccccCchhhHHHHHHHcCCee
Q 028240 157 IKYIGLSEASPDTIRRAHAVHPITAVQLEWS-LWARDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~gi~v 208 (211)
.--|.|...+.+.+..+.....++++.+++. -.........+..|.++|+.+
T Consensus 25 ~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~ 77 (150)
T PF01876_consen 25 YDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFF 77 (150)
T ss_dssp -SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EE
T ss_pred ceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEE
Confidence 3344555555555666666556666666553 111223345666666666654
No 299
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=26.08 E-value=3.7e+02 Score=22.07 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcC--CCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHH
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYG--PYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (211)
..+.++..++++.+.+.|+..+.-+..=. ...-..++. .+++..-.++.|+|... .+. ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~-~l~~~g~~~v~i~TNG~----------------ll~-~~ 100 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIR-RIKDYGIKDVSMTTNGI----------------LLE-KL 100 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHH-HHHhCCCceEEEEcCch----------------HHH-HH
Confidence 35778889999999999998776432000 001222232 22322112455555421 122 22
Q ss_pred HHHHhhcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCcc----cEEEeCCCCHHHHHHHhc
Q 028240 116 EASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPDTIRRAHA 175 (211)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~l~~~~~ 175 (211)
-..|.+.|++.+.+ -++.+++ ...++.++++++.+++.|.. ..+.+.+.+.+++.++++
T Consensus 101 ~~~l~~~g~~~v~i-Sld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~ 171 (302)
T TIGR02668 101 AKKLKEAGLDRVNV-SLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVE 171 (302)
T ss_pred HHHHHHCCCCEEEE-EecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 33456667665542 3344432 12477899999999999852 344555567777776654
No 300
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=26.06 E-value=3.5e+02 Score=23.00 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=32.2
Q ss_pred ccEEEeCCCCHHHHHHHhc-cCCceEEeccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 157 IKYIGLSEASPDTIRRAHA-VHPITAVQLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~-~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
++..-+...+.+.+++++. ..+..++..+.|+.-. ..-+.+.+.|+++|+.++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lI 170 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLI 170 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEE
Confidence 4444444456777777654 2445555666676322 233568889999988765
No 301
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=26.02 E-value=2.9e+02 Score=23.85 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEeecCCCCCC-----------HHHHHHHHHHHHHcCcccEEEeC-------CCCHHHHHHHhcc---CCceEEeccCCc
Q 028240 130 YYQHRVDTSVP-----------IEETIGEMKKLVEEGKIKYIGLS-------EASPDTIRRAHAV---HPITAVQLEWSL 188 (211)
Q Consensus 130 ~~lh~~~~~~~-----------~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~---~~~~~~q~~~~~ 188 (211)
+.||.|++..+ +++.+++.+...+... +.|-+- |-+.++..++.+. .+-.++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Q ss_pred cccCc--------hhhHHHHHHHcCCeee
Q 028240 189 WARDI--------ENEIVPLCRFVRLAVK 209 (211)
Q Consensus 189 ~~~~~--------~~~~~~~~~~~gi~v~ 209 (211)
+.... -....+...++||.+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~t 323 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVT 323 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEE
No 302
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=25.79 E-value=4.1e+02 Score=22.50 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCcCCC--cHHHHHHHHHhcCCC-CcEEEEeccccccCCCcccccCC
Q 028240 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKG 106 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g--~~E~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~ 106 (211)
++++..++.+.+.+.|+..+| +...||.. ..-+.+.+.++.+.. -.+-|+.|+...... ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~------~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD------QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC------Cc
Confidence 678888888888899999998 44556631 122344455544311 135677776322110 01
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCCH---------HHHHHHHHHHHHc-CcccEEEeCC-CCHHHHHHHh
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPI---------EETIGEMKKLVEE-GKIKYIGLSE-ASPDTIRRAH 174 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-~~~~---------~~~~~~l~~l~~~-G~ir~iGvs~-~~~~~l~~~~ 174 (211)
+... ...+-+.|...|+ |.+.+|..+. .... ..-|+.+.++++. ..|--||... .+++++++++
T Consensus 149 t~~~-~~~~~~~l~~aG~---d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEF-LCDFVDTVAEAGC---DTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHH-HHHHHHHHHHhCC---CEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 1111 2233444556674 6667885431 0000 0236777778776 3677777766 5778888877
Q ss_pred cc
Q 028240 175 AV 176 (211)
Q Consensus 175 ~~ 176 (211)
+.
T Consensus 225 ~~ 226 (333)
T PRK11815 225 QH 226 (333)
T ss_pred hc
Confidence 63
No 303
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=25.69 E-value=3.4e+02 Score=21.48 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 37 SPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
+..+.++..++++.|.+.|+.-+-..+.|= +...+.|+ ..++-++|=++.+.... +.+.-...++
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G~~-------~~~~K~~E~~ 77 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLGAS-------TTDVKLYETK 77 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCCCC-------cHHHHHHHHH
Confidence 346789999999999999998888776653 34445554 34677888787654321 2333334444
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--CcccEE--EeCCCCHHHHHHHhcc---CCceEEecc--CC
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYI--GLSEASPDTIRRAHAV---HPITAVQLE--WS 187 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~i--Gvs~~~~~~l~~~~~~---~~~~~~q~~--~~ 187 (211)
+.+ ++|.+-+|+++--..-...+.+...+.+.++++. |+.-.+ =.+-.+.+++.++.+. ...+++... |.
T Consensus 78 ~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 78 EAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred HHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 444 4799999998865433334566777777777764 443222 1112344566555443 467888887 65
Q ss_pred c
Q 028240 188 L 188 (211)
Q Consensus 188 ~ 188 (211)
.
T Consensus 157 ~ 157 (211)
T TIGR00126 157 A 157 (211)
T ss_pred C
Confidence 3
No 304
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=25.58 E-value=2.8e+02 Score=20.51 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcC-CC-----cHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCCChHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYG-PY-----TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g-----~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 112 (211)
.++.....++.|++.|.+.+++-=..- +| |.-..+-+.|+..+ +-.+.|-.|.... .+.+.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~ 78 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLE 78 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHH
Confidence 457888999999999999887543321 11 01112333333322 2245555554321 22344
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCC--HHHHH-HHhccCCceEEeccCCcc
Q 028240 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS--PDTIR-RAHAVHPITAVQLEWSLW 189 (211)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~l~-~~~~~~~~~~~q~~~~~~ 189 (211)
+.+-+.+++.+. .+-+++.+.++ +.+..+.+.... . .+|+...+ ..... .......++.+..++..+
T Consensus 79 ~~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (189)
T cd08556 79 AKVAELLREYGL--EERVVVSSFDH-----EALRALKELDPE-V--PTGLLVDKPPLDPLLAELARALGADAVNPHYKLL 148 (189)
T ss_pred HHHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCC-C--cEEEEeecCcccchhhhHHHhcCCeEEccChhhC
Confidence 455555555552 23344444332 233333333222 1 12332221 11111 112223445555555442
Q ss_pred ccCchhhHHHHHHHcCCeeee
Q 028240 190 ARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~a 210 (211)
...+++.|+++|+.|.+
T Consensus 149 ----~~~~i~~~~~~g~~v~~ 165 (189)
T cd08556 149 ----TPELVRAAHAAGLKVYV 165 (189)
T ss_pred ----CHHHHHHHHHcCCEEEE
Confidence 35789999999998864
No 305
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=25.58 E-value=3.9e+02 Score=22.20 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCC-CHHHHHHHhccCCceEEecc
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLE 185 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 185 (211)
+++.+++.++..++ .+-+.+--+-++..+...+.+.....++..++.|+--.+=++.. ++..+...+.....+.+-.-
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 46677777777665 22122222233433333445666677777777777666555543 23334333321111111111
Q ss_pred CCccccCchhhHHHHHHHcCCeee
Q 028240 186 WSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
+++.+ .++.++..+++||.|.
T Consensus 217 ~~l~~---~~~~i~~l~~~gi~v~ 237 (324)
T TIGR01430 217 VRALE---DPELLKRLAQENITLE 237 (324)
T ss_pred hhhcc---CHHHHHHHHHcCceEE
Confidence 11111 2346777777777664
No 306
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=25.56 E-value=1.3e+02 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=33.0
Q ss_pred CcccccceeccccCCCC-CCCCCCHHH----HHHHHHHHHHcCCC--eEeCCCCc
Q 028240 18 GLEVSKLGYGCMSLSGC-YNSPLSEED----GISIIKHAFSKGIT--FFDTADKY 65 (211)
Q Consensus 18 g~~vs~lg~G~~~~~~~-~~~~~~~~~----~~~~l~~A~~~Gi~--~~DtA~~Y 65 (211)
|+...+|.||.=.+|-. |. ..+.++ +.+++++-+++|++ |+||+-.-
T Consensus 79 gf~~~~iiLGGDHLGPn~Wq-~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~c 132 (426)
T PRK15458 79 NFPQEALILGGDHLGPNRWQ-NLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSC 132 (426)
T ss_pred CCChhhEEeecCCCCCcccc-CCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCC
Confidence 44555788888777642 43 344443 67888999999999 78998754
No 307
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=25.55 E-value=3.4e+02 Score=21.47 Aligned_cols=130 Identities=21% Similarity=0.109 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHH-----HHHHH
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV-----RSCCE 116 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i-----~~~~~ 116 (211)
++..+.++.+++.|+.-+-+.+.|. ....+.+... +.++-+..++..... ..+.- ..+++
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~~-~~~~~~vi~fp~g~~---------~~~~k~~~~~~~~ve 83 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAGS-GVKVGLVIGFPFGTS---------TTEPKGYDQIVAEVE 83 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTTS-TSEEEEEESTTTSSS---------THHHHTCEEEHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhcc-ccccceEEEeCCCCC---------ccccccccchHHHHH
Confidence 3889999999999999998888875 2233333332 224555555543221 12222 45666
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc---CcccEEEeCCCCHH---------HHHHHhc---cCCceE
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASPD---------TIRRAHA---VHPITA 181 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvs~~~~~---------~l~~~~~---~~~~~~ 181 (211)
+. .++|.+-+|+++-..+......+...+.+.+++++ --+..|--+..... .+..+.. ....++
T Consensus 84 ~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 84 EA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HH-HHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 66 56899999999877554333345555555555443 23334433322222 2444332 256678
Q ss_pred EeccCC
Q 028240 182 VQLEWS 187 (211)
Q Consensus 182 ~q~~~~ 187 (211)
+.+.+-
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 877766
No 308
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=25.54 E-value=4.4e+02 Score=22.73 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=59.0
Q ss_pred HHHHHHHHH--HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceE-EeccC
Q 028240 110 YVRSCCEAS--LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITA-VQLEW 186 (211)
Q Consensus 110 ~i~~~~~~s--L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~-~q~~~ 186 (211)
.+...+.+. |++.|+ |++=+-.|+ .+..+++.+++++=.+--++=--|+...+.+..+.+ .+. --+|=
T Consensus 34 Dv~aTv~QI~~L~~aG~---dIVRvtv~~-----~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g-~~k~RINPG 104 (361)
T COG0821 34 DVEATVAQIKALERAGC---DIVRVTVPD-----MEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECG-VDKVRINPG 104 (361)
T ss_pred cHHHHHHHHHHHHHcCC---CEEEEecCC-----HHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcC-cceEEECCc
Confidence 344444443 566776 455555554 378899999999988888887778866666665543 222 23445
Q ss_pred CccccCchhhHHHHHHHcCCee
Q 028240 187 SLWARDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~gi~v 208 (211)
|+-....-.++++.|+++|+.+
T Consensus 105 Nig~~~~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 105 NIGFKDRVREVVEAAKDKGIPI 126 (361)
T ss_pred ccCcHHHHHHHHHHHHHcCCCE
Confidence 5544432357999999999876
No 309
>PRK15005 universal stress protein F; Provisional
Probab=25.51 E-value=2.3e+02 Score=19.93 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=9.5
Q ss_pred chhhHHHHHHHcCCeee
Q 028240 193 IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 193 ~~~~~~~~~~~~gi~v~ 209 (211)
+.+.++++++++++-++
T Consensus 95 p~~~I~~~a~~~~~DLI 111 (144)
T PRK15005 95 PKDRILELAKKIPADMI 111 (144)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 34456666666655544
No 310
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=25.50 E-value=7.4e+02 Score=25.33 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=53.2
Q ss_pred hcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc-Ccc--cEEEeCCCCHHHHHHHhccCCceEEeccCCccc--cCchh
Q 028240 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKI--KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA--RDIEN 195 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~i--r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~--~~~~~ 195 (211)
.-|.+.||+-.= ....+-++.+..+..+... ..+ --|-+-+++++.++.+++..+=..+-+..|... ... .
T Consensus 379 e~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~-~ 454 (1178)
T TIGR02082 379 ENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERF-I 454 (1178)
T ss_pred HCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccH-H
Confidence 458899999642 1123344444444444433 212 237777899999999998732123444555532 222 3
Q ss_pred hHHHHHHHcCCeeeeC
Q 028240 196 EIVPLCRFVRLAVKSV 211 (211)
Q Consensus 196 ~~~~~~~~~gi~v~a~ 211 (211)
++++.|+++|..|++|
T Consensus 455 ~~~~l~~~yga~vV~m 470 (1178)
T TIGR02082 455 ETAKLIKEYGAAVVVM 470 (1178)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 6999999999999875
No 311
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=25.49 E-value=1e+02 Score=26.58 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=26.8
Q ss_pred HHHHHhccCCceEEeccCCcc---------ccC--chhhHHHHHHHcCCeeee
Q 028240 169 TIRRAHAVHPITAVQLEWSLW---------ARD--IENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~~~~---------~~~--~~~~~~~~~~~~gi~v~a 210 (211)
.+.++++. .|++++++-|.+ ..+ ..+++.++|+..|+.|.|
T Consensus 88 ~i~~Ai~~-GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEa 139 (347)
T TIGR01521 88 TCQRAIQL-GFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEG 139 (347)
T ss_pred HHHHHHHc-CCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 34444443 466777776654 111 356899999999999875
No 312
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=25.49 E-value=4.9e+02 Score=23.31 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHH----HhhcC-CCceeEEEeecCCCCCCHHHHHHHHHHHHHc-CcccEEEeCCCCHHHHHHHhccCC-
Q 028240 106 GTPEYVRSCCEAS----LRRLD-VEYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHP- 178 (211)
Q Consensus 106 ~s~~~i~~~~~~s----L~~Lg-~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~- 178 (211)
.+.+.+.+.++.. ..+.| .=..|++-++.... +.+.....++.+++. +. -+.+.+++++.++++++.+.
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad 177 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVAD 177 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCC
Confidence 3556666666555 12334 22467777777654 445566667777663 44 37888899999999987642
Q ss_pred --ceEEeccCCccccCchhhHHHHHHHcCCeeee
Q 028240 179 --ITAVQLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 179 --~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+.+.-.. ..--+.+.+.|+++|..|++
T Consensus 178 ~~plI~Sat-----~dN~~~m~~la~~yg~pvVv 206 (450)
T PRK04165 178 RKPLLYAAT-----KENYEEMAELAKEYNCPLVV 206 (450)
T ss_pred CCceEEecC-----cchHHHHHHHHHHcCCcEEE
Confidence 2332221 11124688889999988875
No 313
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=25.39 E-value=1e+02 Score=25.88 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcc
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (211)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 466778899999999986 5754321 1111234678899999999998
No 314
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.37 E-value=4.2e+02 Score=22.41 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhc-CCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHh
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (211)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++ .+ ++-|..=... .++.+... + ++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN~----------~~~~~~a~--~---~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADANS----------AYTLADIP--L---LK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECCC----------CCCHHHHH--H---HH
Confidence 6677778888899999863321 211123333 34443 33 3322222211 12444332 1 33
Q ss_pred hcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHH
Q 028240 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIV 198 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~ 198 (211)
+|. ..++.++..|-+. +-++.+.++++.-. =-+.|=|-++...+..+++....+++|+..+..-. ..-..+.
T Consensus 199 ~l~--~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RLD--EYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hhh--cCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 332 2356666666432 33666777766533 33666677899999999988888999998765321 1134689
Q ss_pred HHHHHcCCeee
Q 028240 199 PLCRFVRLAVK 209 (211)
Q Consensus 199 ~~~~~~gi~v~ 209 (211)
..|+.+|+.++
T Consensus 273 ~~A~~~gi~~~ 283 (354)
T cd03317 273 DLCQEHGIPVW 283 (354)
T ss_pred HHHHHcCCcEE
Confidence 99999999875
No 315
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=25.36 E-value=1.1e+02 Score=25.99 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
+.-.++|++..+.|+ .+|.|.. +|+.+=.+++- -+.-+|+|........+ .+.+. ++ ++++..-++
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~~--h~RNl-tD---e~iraia~~ 225 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALCP--HPRNL-TD---EQIRAIAER 225 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS----TTSB--H---HHHHHHHHT
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhCC--CCCCC-CH---HHHHHHHHC
Confidence 556899999999998 8999976 88888888875 24578888876543211 11122 22 233333333
Q ss_pred cCCCceeEEEeec---C--CCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 122 LDVEYIDLYYQHR---V--DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 122 Lg~~~iDl~~lh~---~--~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
=| .|=+.+... + +....+++.++.++.+++..=+.+||+.+
T Consensus 226 GG--viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 226 GG--VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp T---EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred Cc--EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 33 233333322 1 23456889999999999887799999986
No 316
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=25.26 E-value=2.3e+02 Score=20.68 Aligned_cols=55 Identities=25% Similarity=0.216 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCC
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (211)
.+.+.+...+++..+.-. +.-.+=..|...++..+.+.+..+++.| +..+|+.+-
T Consensus 81 v~~~~L~~~L~~~~~~~~----~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t~ 135 (141)
T PRK11267 81 VTDETMITALDALTEGKK----DTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVGE 135 (141)
T ss_pred ccHHHHHHHHHHHHhcCC----CceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEec
Confidence 355666666665544321 2222235567788999999999999999 556887653
No 317
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=25.19 E-value=3.6e+02 Score=22.38 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHc--CCCeEeCCCCcCCCcHHHHHHHHHhcCC-CCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSK--GITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~--Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
..+.+..+.++++.+ |+.+.-.-..|=. +++.+-+.+.... ...+++.|=+. ..+++.++
T Consensus 14 tGeTAe~v~~A~l~QF~~~~~~~~~~p~v~--~~~~~~~i~~~~~~~~~iV~~Tlv~---------------~elr~~l~ 76 (269)
T PRK05339 14 TGETAETVGRAALSQFPNVEFEEHRYPFVR--TEEKADEVLEEINAERPIVFYTLVD---------------PELREILE 76 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeEEEeCCcC--CHHHHHHHHHHHHhcCCEEEEeCCC---------------HHHHHHHH
Confidence 347777888877754 4543212222222 6666666666543 44566666553 46889999
Q ss_pred HHHhhcCCCceeEE
Q 028240 117 ASLRRLDVEYIDLY 130 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~ 130 (211)
+..+.+|+.++|++
T Consensus 77 ~~~~~~~i~~vdll 90 (269)
T PRK05339 77 ERCAEFGIPCIDIL 90 (269)
T ss_pred HHHHHcCCCEEecc
Confidence 99999999999998
No 318
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.16 E-value=1.3e+02 Score=24.60 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=52.2
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHH-HHHHHHcCcccEEEeCC-------CCHHHHHHHhccCCceEEec
Q 028240 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSE-------ASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~q~ 184 (211)
..++..|+-.| +|||++-+-|=......+++++. ++-+++.|.--+.|=.- ...++..+......|+++.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 46777778888 89999999987655444455444 44444556555555221 22333333334456777777
Q ss_pred cCCccccC--chhhHHHHHHHcCCeeee
Q 028240 185 EWSLWARD--IENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 185 ~~~~~~~~--~~~~~~~~~~~~gi~v~a 210 (211)
.-....-. ...++++.++++|..|++
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 65544433 223588888888887764
No 319
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=24.97 E-value=1.4e+02 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=32.2
Q ss_pred CcccccceeccccCCC-CCCCCCCHHH----HHHHHHHHHHcCCC--eEeCCCC
Q 028240 18 GLEVSKLGYGCMSLSG-CYNSPLSEED----GISIIKHAFSKGIT--FFDTADK 64 (211)
Q Consensus 18 g~~vs~lg~G~~~~~~-~~~~~~~~~~----~~~~l~~A~~~Gi~--~~DtA~~ 64 (211)
|+...+|.||.=.+|- .|.. .+.++ +.+++.+-+++|++ |+||+-.
T Consensus 76 gf~~~~iiLggDHlGPn~Wq~-~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 76 GFPRERIILGGDHLGPNCWQQ-EPADAAMEKSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred CCChhcEEeecCCCCCccccC-CCHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 4455578888877764 2433 34443 67888889999999 7898865
No 320
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=24.67 E-value=67 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCeEeCCCC
Q 028240 45 ISIIKHAFSKGITFFDTADK 64 (211)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~ 64 (211)
...+..+++.|+|+||.--.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~ 50 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCW 50 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcc
Confidence 35788999999999985533
No 321
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.60 E-value=73 Score=19.65 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=10.1
Q ss_pred hhHHHHHHHcCCeee
Q 028240 195 NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~ 209 (211)
..+...|++.||.++
T Consensus 44 ~~~~~~~~~~gi~~i 58 (67)
T smart00481 44 VEFYKAAKKAGIKPI 58 (67)
T ss_pred HHHHHHHHHcCCeEE
Confidence 356677777777664
No 322
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=24.60 E-value=1.5e+02 Score=26.16 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=32.5
Q ss_pred CcccccceeccccCCCC-CCCCCCHHH----HHHHHHHHHHcCCC--eEeCCCC
Q 028240 18 GLEVSKLGYGCMSLSGC-YNSPLSEED----GISIIKHAFSKGIT--FFDTADK 64 (211)
Q Consensus 18 g~~vs~lg~G~~~~~~~-~~~~~~~~~----~~~~l~~A~~~Gi~--~~DtA~~ 64 (211)
|+...+|.||.=.+|-. |. ..+.++ +.+++++-+++|++ |+||+-.
T Consensus 75 gf~~~~iiLggDHlGPn~Wq-~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 127 (420)
T TIGR02810 75 GFPRDRLILGGDHLGPNPWQ-HLPADEAMAKAAALVDAYVEAGFTKIHLDASMG 127 (420)
T ss_pred CCChhcEEeecCCCCCcccc-CCCHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 44555788888777643 43 234444 67888889999999 7898865
No 323
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=24.57 E-value=1e+02 Score=27.10 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=32.2
Q ss_pred CHHHHHHHhc-cCCceEEeccCCc----cccCchhhHHHHHHHcCCeeee
Q 028240 166 SPDTIRRAHA-VHPITAVQLEWSL----WARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 166 ~~~~l~~~~~-~~~~~~~q~~~~~----~~~~~~~~~~~~~~~~gi~v~a 210 (211)
+.+.++..+. ..+.-++-.+-|+ +.|..-+.+.++|++||+-|++
T Consensus 161 D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvis 210 (420)
T KOG0257|consen 161 DPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVIS 210 (420)
T ss_pred ChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 4567776654 3677777778885 4454446799999999987764
No 324
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.54 E-value=3.8e+02 Score=21.70 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYG 66 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 66 (211)
..+.+...+.++..++.|++-+-.....|
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstG 42 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTG 42 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 46778888888888888888776555544
No 325
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=24.48 E-value=4.4e+02 Score=22.34 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHH-cCCCeEeCCCCcCCCcHHHHHH---HHHhcCCC-CcEEEEeccccccCCCcccccCCChHHHHHHH
Q 028240 41 EEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLG---KALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (211)
Q Consensus 41 ~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~~E~~lG---~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (211)
.++..++++...+ .|++.+--+..=.--.....+. +.+++++. +.+.+.|+.... .+..+.+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~-----------~P~rit~el 212 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVV-----------IPQRITDEL 212 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCcc-----------CchhcCHHH
Confidence 5677778877654 4787655442111001222232 33333332 456677776422 244566667
Q ss_pred HHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC-------CCCHHHHHHHhc
Q 028240 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-------EASPDTIRRAHA 175 (211)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~ 175 (211)
-+.|++.|...+.+. |.--+..-.+++.++++.|++.|.. +++. |.+++.+.++.+
T Consensus 213 ~~~L~~~~~~~~~vs--h~nh~~Ei~~~~~~ai~~L~~aGi~--v~~qtvLl~gvnD~~~~l~~L~~ 275 (331)
T TIGR00238 213 CELLASFELQLMLVT--HINHCNEITEEFAEAMKKLRTVNVT--LLNQSVLLRGVNDRAQILAKLSI 275 (331)
T ss_pred HHHHHhcCCcEEEEc--cCCChHhCCHHHHHHHHHHHHcCCE--EEeecceECCcCCCHHHHHHHHH
Confidence 777777776544333 3321112236889999999999973 4333 345565655543
No 326
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=24.41 E-value=2.5e+02 Score=22.39 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP 82 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~ 82 (211)
+.+++.++.++.++.|++.++....-.. +.+.+...-+.++
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp~--a~e~I~~l~~~~p 63 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTPA--ALEAIRALAKEFP 63 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCC--HHHHHHHHHHhCc
Confidence 6799999999999999999998765554 6666665555443
No 327
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=24.39 E-value=5.3e+02 Score=23.30 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (211)
..+.++..++.+...+.|+..|+...
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 35678888999999999999999764
No 328
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.36 E-value=58 Score=27.87 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCH-----------------------HHHHHHhccCCceEEeccCCccccCchhhH
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASP-----------------------DTIRRAHAVHPITAVQLEWSLWARDIENEI 197 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~-----------------------~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~ 197 (211)
...+++.++++.+.+.++-|.+-.++| +++.++++.- ...|-.|+.-++ ..+
T Consensus 141 ~~~~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r--~a~~~~y~~~~r---~~i 215 (377)
T COG3454 141 HPATLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEER--QALSARYSDPNR---QAI 215 (377)
T ss_pred ChhHHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHH--HHHHhhcccchH---HHH
Confidence 345556666666666666666555543 3333332210 112344444333 469
Q ss_pred HHHHHHcCCeee
Q 028240 198 VPLCRFVRLAVK 209 (211)
Q Consensus 198 ~~~~~~~gi~v~ 209 (211)
.+.|+++||.+-
T Consensus 216 ~~~c~~rgI~lA 227 (377)
T COG3454 216 AALCRERGIALA 227 (377)
T ss_pred HHHHHHcCCcee
Confidence 999999999863
No 329
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=24.25 E-value=3e+02 Score=21.27 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccC----CceEEeccCCccccCch-hhHHHHHHHcCC
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH----PITAVQLEWSLWARDIE-NEIVPLCRFVRL 206 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~----~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi 206 (211)
+.++.+.|+.|+++|.--+| +||.....++..++.. -|+.+-.........+. +.+...|++.|+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 45788899999999865555 7776666666555432 23333222222222221 235666666665
No 330
>PRK11059 regulatory protein CsrD; Provisional
Probab=24.24 E-value=5.2e+02 Score=23.92 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEeccCCcccc--------CchhhHHHHHHHcCCeeee
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWAR--------DIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~~~~~~~~gi~v~a 210 (211)
.+.....+..|++.|. .+++.+|.. ..+.. +...+++.+-++-++... ..-+.++..|+..|+.|+|
T Consensus 532 ~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~-L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 532 ISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSY-IKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHH-HHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 4567888889999998 666666532 12222 233457777666554321 1224689999999999987
No 331
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=24.18 E-value=1.3e+02 Score=25.45 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCC
Q 028240 44 GISIIKHAFSKGIT 57 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~ 57 (211)
..++|+.|.+.|+-
T Consensus 5 ~k~lL~~A~~~~ya 18 (307)
T PRK05835 5 GNEILLKAHKEGYG 18 (307)
T ss_pred HHHHHHHHHHCCce
Confidence 45788888888764
No 332
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.18 E-value=2.1e+02 Score=19.48 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=35.0
Q ss_pred HHHHHHcCcccEEEeCCCC---HHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 148 MKKLVEEGKIKYIGLSEAS---PDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 148 l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
++++.+...+-.+-+++-+ .+.+.++++.....++.=|...- ...-.++++.|+++|+.++
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~-~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALT-LEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSS-HHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCC-HHHHHHHHHHHHHhCCEEE
Confidence 4445554456666666533 23455566666555555555442 2223578899999888764
No 333
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=24.11 E-value=4.6e+02 Score=22.41 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=57.5
Q ss_pred cCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHH
Q 028240 65 YGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEET 144 (211)
Q Consensus 65 Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~ 144 (211)
+|.| +-..+++.+++...++++|.+--... .....+.+.++|+.-|.++ ..+....++...+.+
T Consensus 7 ~G~g-~~~~l~~~l~~~g~~~~liv~~~~~~------------~~~~~~~v~~~L~~~g~~~---~~~~~v~~~p~~~~v 70 (370)
T cd08192 7 FGAG-AIKELPAECAELGIKRPLIVTDPGLA------------ALGLVARVLALLEDAGLAA---ALFDEVPPNPTEAAV 70 (370)
T ss_pred ECcC-HHHHHHHHHHHcCCCeEEEEcCcchh------------hCccHHHHHHHHHHcCCeE---EEeCCCCCCCCHHHH
Confidence 4544 45568888887554566665432111 1123446777777777643 333444555667788
Q ss_pred HHHHHHHHHcCcccEEEeCCCCHHHHHHHh
Q 028240 145 IGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (211)
.++++.+++.+.=-=|||..-++-.+.+++
T Consensus 71 ~~~~~~~~~~~~d~IIaiGGGSviD~aK~i 100 (370)
T cd08192 71 EAGLAAYRAGGCDGVIAFGGGSALDLAKAV 100 (370)
T ss_pred HHHHHHHHhcCCCEEEEeCCchHHHHHHHH
Confidence 888888888766666788877766666554
No 334
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=24.08 E-value=1.4e+02 Score=24.43 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (211)
+..-+.-+-+.+.++|-...-| |. .|++-++. ++.-. + +=...+.+... -+.++|...+++.-
T Consensus 17 ~rSIAwGIAk~l~~~GAeL~fT---y~---~e~l~krv-~~la~-~-~~s~~v~~cDV--------~~d~~i~~~f~~i~ 79 (259)
T COG0623 17 NRSIAWGIAKALAEQGAELAFT---YQ---GERLEKRV-EELAE-E-LGSDLVLPCDV--------TNDESIDALFATIK 79 (259)
T ss_pred cccHHHHHHHHHHHcCCEEEEE---ec---cHHHHHHH-HHHHh-h-ccCCeEEecCC--------CCHHHHHHHHHHHH
Confidence 4455666777777888876554 33 55333332 22111 0 00122222111 13456666666666
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHH
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 172 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 172 (211)
++.| .+|.+ +|...... -++.-..+-+.=.+|--++.-+|.|+.-.+.+
T Consensus 80 ~~~g--~lD~l-VHsIaFa~-k~el~G~~~dtsre~f~~a~~IS~YS~~~lak 128 (259)
T COG0623 80 KKWG--KLDGL-VHSIAFAP-KEELKGDYLDTSREGFLIAMDISAYSFTALAK 128 (259)
T ss_pred HhhC--cccEE-EEEeccCC-hHHhCCcccccCHHHHHhHhhhhHhhHHHHHH
Confidence 6666 56754 46543211 11111111112233445555667777655444
No 335
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.89 E-value=2.9e+02 Score=23.80 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=49.8
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecC-CCCCCHHHHHHHHHHHHHcCcc----cEEEeCCCCHH-HHHHHhccC
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV-DTSVPIEETIGEMKKLVEEGKI----KYIGLSEASPD-TIRRAHAVH 177 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~-~l~~~~~~~ 177 (211)
..++.+.|..++...-+. +.++-+.+-.. +|...++++++++..+.+..-. |.|-||+.... .+.++....
T Consensus 129 rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~ 205 (345)
T PRK14466 129 GNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEES 205 (345)
T ss_pred CCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhcc
Confidence 347889999998876322 23454555442 3334467899999999877443 68888887643 466655433
Q ss_pred CceEEeccCCc
Q 028240 178 PITAVQLEWSL 188 (211)
Q Consensus 178 ~~~~~q~~~~~ 188 (211)
+ ....+..|.
T Consensus 206 ~-~~LavSLha 215 (345)
T PRK14466 206 E-CHLAISLHS 215 (345)
T ss_pred C-cEEEEEcCC
Confidence 3 233455553
No 336
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.88 E-value=4.7e+02 Score=22.48 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=48.1
Q ss_pred cCCChHHHHHHHHHH---HhhcC--CCceeEEEeecC-CCCCCHHHHHHHHHHHHHc-Cc---ccEEEeCCCC-HHHHHH
Q 028240 104 VKGTPEYVRSCCEAS---LRRLD--VEYIDLYYQHRV-DTSVPIEETIGEMKKLVEE-GK---IKYIGLSEAS-PDTIRR 172 (211)
Q Consensus 104 ~~~s~~~i~~~~~~s---L~~Lg--~~~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~-G~---ir~iGvs~~~-~~~l~~ 172 (211)
...+++.|..++... +...| ...++-+.+... +|...++.+.++++.+++. |. -|.+-||+.. +..+++
T Consensus 128 rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~ 207 (354)
T PRK14460 128 RNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRE 207 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHH
Confidence 456899999998544 33333 222777777774 3344577899999999875 65 2678888755 556665
Q ss_pred Hhcc
Q 028240 173 AHAV 176 (211)
Q Consensus 173 ~~~~ 176 (211)
+.+.
T Consensus 208 L~~~ 211 (354)
T PRK14460 208 LGES 211 (354)
T ss_pred HHhC
Confidence 5443
No 337
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.84 E-value=90 Score=22.93 Aligned_cols=27 Identities=4% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 138 SVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 138 ~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
..+...+.++|+.|.+.|+|+.+-+.+
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~ 75 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEG 75 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 455678999999999999999997755
No 338
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=23.82 E-value=46 Score=32.63 Aligned_cols=36 Identities=8% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHH
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEET 144 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~ 144 (211)
..=++++.......+-+++|||-|-.|+++..++.+
T Consensus 7 ~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLefhGV 42 (1629)
T KOG1892|consen 7 DEEREKLADIIQQWNANRLDLFELSQPTEDLEFHGV 42 (1629)
T ss_pred hhHHHHHHHHHHHhcccccceeeccCCCccceeeee
Confidence 344667777788889999999999999877654443
No 339
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.75 E-value=4.4e+02 Score=25.62 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--CcccEEEeCCCCHHHHHHHhccCCceEEecc
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 185 (211)
-+.+++-++...........-+|+|+..+.-. .+.+++|.+..++ ..++.|-++|.....+.-+.. -|.+++
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~f~ 174 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQFN 174 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEEEe
Confidence 45566666654433322345678887765332 2567777777776 589999999875333322222 345666
Q ss_pred CCccccC-chhhHHHHHHHcCCee
Q 028240 186 WSLWARD-IENEIVPLCRFVRLAV 208 (211)
Q Consensus 186 ~~~~~~~-~~~~~~~~~~~~gi~v 208 (211)
|..+... ....+...|.+.||.+
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~EgI~i 198 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEERIAF 198 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCC
Confidence 6665543 1223455666667653
No 340
>PRK12383 putative mutase; Provisional
Probab=23.69 E-value=3.9e+02 Score=23.57 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=51.2
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHc---CcccEEEeCCCCHHHHHHHhccC--CceEE--------ec-------cCCc
Q 028240 129 LYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASPDTIRRAHAVH--PITAV--------QL-------EWSL 188 (211)
Q Consensus 129 l~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvs~~~~~~l~~~~~~~--~~~~~--------q~-------~~~~ 188 (211)
+||+-...+..++++.++.-+..++- |+|-+.|=-+.+.+.|..+.+.. +|.-. -. .|++
T Consensus 151 v~qiaahe~~i~~e~l~~~c~~~R~~~~v~RVIargg~~~~~~~~~~~~~~~~~pf~G~~~~~~~~~rt~~~vrhldy~~ 230 (406)
T PRK12383 151 VYNVTANLSVISFDDALKIGRIVREQVQVGRVIVFGGLLTDSQRILDAAESKEGRFIGINAPKSGVYDNGYQVVHLGYGV 230 (406)
T ss_pred eEEEEecccccCHHHHHHHHHHHHHhcccceEEEecccccccchhhhhhcccCCCcccccCCCCCceECCCccccCCCCC
Confidence 78888888888899887776666654 55555544455666776666542 22111 11 2332
Q ss_pred cccCchhhHHHHHHHcCCeeeeC
Q 028240 189 WARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
- +...+.++.++.|+.+.+|
T Consensus 231 ~---p~~~v~~~l~~~G~~v~~V 250 (406)
T PRK12383 231 D---PKVQVPQKLYEAGVPVVLV 250 (406)
T ss_pred C---CcchhhhHHHHcCCCEEEE
Confidence 1 1246999999999998875
No 341
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=23.57 E-value=3.4e+02 Score=22.24 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCCC----------CCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCC
Q 028240 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTS----------VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHP 178 (211)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 178 (211)
-.+-..+.+..++||+.|+ +=.+.|-. ..+++-++.|+++|++=-+. |=.--|.+++.....+.
T Consensus 34 ~~~a~~lk~~t~~lgi~~v---fKsSfDKANRsSi~s~RGpGLeeglki~~~vK~efgv~-ilTDVHe~~q~~~vA~V-- 107 (279)
T COG2877 34 LEIAEHLKELTEKLGIPYV---FKSSFDKANRSSIHSYRGPGLEEGLKILQEVKEEFGVP-ILTDVHEPSQAQPVAEV-- 107 (279)
T ss_pred HHHHHHHHHHHhccCCceE---EecccccccccccccccCCCHHHHHHHHHHHHHHcCCc-eeeccCChhhcchHHhh--
Confidence 3455667777888887653 33333221 23789999999999872211 11123666666665444
Q ss_pred ceEEeccCCccccCchhhHHHHHHHcCCe
Q 028240 179 ITAVQLEWSLWARDIENEIVPLCRFVRLA 207 (211)
Q Consensus 179 ~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 207 (211)
.+++|++-=+..| .+++..+.+.|-.
T Consensus 108 vDilQiPAFLcRQ---TDLl~A~AkTg~~ 133 (279)
T COG2877 108 VDVLQIPAFLCRQ---TDLLVAAAKTGAV 133 (279)
T ss_pred hhhhcchHHHhhh---HHHHHHHHHhCCe
Confidence 4578887666444 4677777777644
No 342
>PRK05588 histidinol-phosphatase; Provisional
Probab=23.51 E-value=3.9e+02 Score=21.41 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCC-----cHHHHHHHHH---hcCCCCcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPY-----TNEILLGKAL---KELPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-----~~E~~lG~~l---~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
....+.+++|.+.|+..+ .+++.... .-..-+-..+ +.++..+|.+..-++. .+. -..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~------------~~~-~~~ 81 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGM------------EKD-LIE 81 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecc------------cCC-CHH
Confidence 456788999999999998 77664210 0000111222 2222234444444432 122 245
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCC----------CCHH----HHHHHHHHHHH-cCcccEE
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTS----------VPIE----ETIGEMKKLVE-EGKIKYI 160 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~----------~~~~----~~~~~l~~l~~-~G~ir~i 160 (211)
.+++.|++...|++ +.-+|+.+.. .+.+ .-++.+.++.+ .+++.-+
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvl 142 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSL 142 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 56777777777776 6778875321 1222 33467777666 4544433
No 343
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=23.45 E-value=2.9e+02 Score=26.93 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeC----CCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccC
Q 028240 37 SPLSEEDGISIIKHAFSKGITFFDT----ADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL 97 (211)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~Dt----A~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~ 97 (211)
..++++...+.|+.+++.|+..+-. +..|.. .|..+|+..+++.=..+-+++|+.+...
T Consensus 163 kk~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~--HE~~v~kiA~e~GF~~vSLSs~l~PMik 225 (1247)
T KOG1939|consen 163 KKVDEEALRQDLKELYDKGVKSIAVVLLHSYTYPD--HELEVGKIAKEIGFSHVSLSSKLMPMIK 225 (1247)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEeeeeeccccCCc--HHHHHHHHHHHhCccceechhcccccee
Confidence 3578889999999999999996553 345565 8999999888766677889999876543
No 344
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=23.35 E-value=4.4e+02 Score=22.62 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc-CCceEEeccCCccccC-chhhHHHHHHHcCCeee
Q 028240 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARD-IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~ 209 (211)
....+..+.+.--++..-+...+++.+++++.. .+..++..+.|+.-.- .-+++.+.|+++|+-++
T Consensus 98 ~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vi 165 (378)
T TIGR01329 98 TDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVV 165 (378)
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEE
Confidence 333344433332334444444467777777642 4455566666653322 23568899999988765
No 345
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=23.23 E-value=1.1e+02 Score=26.40 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHH---HHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEIL---LGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~---lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (211)
+.++..+.++.|.+.|++.+-|+-+...+..+.. +.+.++.....++.|..-+.+..-.. ...+.+. +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~----lg~~~~d----l- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKK----LGISYDD----L- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT----TT-BTTB----T-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH----cCCCHHH----H-
Confidence 5788899999999999999999977764322222 22222221234555555554321100 0011111 1
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccC-CceEEeccCCccccCc--
Q 028240 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH-PITAVQLEWSLWARDI-- 193 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~-- 193 (211)
+.++.||++.|-+ |...+.++ +.+|-+.|.--.+=.|+.+.+.+..+++.. .++-+....|.+.+..
T Consensus 83 ~~~~~lGi~~lRl------D~Gf~~~~----ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDGLRL------DYGFSGEE----IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SEEEE------SSS-SCHH----HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCEEEE------CCCCCHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 2356677665443 44433333 333333377667777887778888887764 3444444455544431
Q ss_pred -h----hhHHHHHHHcCCeeeeC
Q 028240 194 -E----NEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 194 -~----~~~~~~~~~~gi~v~a~ 211 (211)
. .+.-...++.|+.+.|+
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AF 175 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAF 175 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEE
Confidence 1 23445677889888773
No 346
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.22 E-value=1.1e+02 Score=26.60 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccC
Q 028240 46 SIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL 97 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~ 97 (211)
.++++|++.|-+++|.+..-.. -|+.--+.=+...++.++|.+-+++...
T Consensus 100 ~VVkacienG~~~vDISGEP~f--~E~mq~kYhd~A~ekGVYIVsaCGfDSI 149 (423)
T KOG2733|consen 100 PVVKACIENGTHHVDISGEPQF--MERMQLKYHDLAKEKGVYIVSACGFDSI 149 (423)
T ss_pred HHHHHHHHcCCceeccCCCHHH--HHHHHHHHHHHHHhcCeEEEeecccCCC
Confidence 6799999999999999843221 3333333322234688999999987544
No 347
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=23.14 E-value=4.9e+02 Score=22.45 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHH----HHH---HHhcCCC-CcEEEEeccccccCCCcccccCCChHH
Q 028240 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEIL----LGK---ALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEY 110 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~----lG~---~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~s~~~ 110 (211)
.+.++..++++.+.+.|++.+-.+ | | |.. +-+ .+++.+. ..+.|+|-...
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~t---G-G--EPllr~dl~eli~~l~~~~gi~~i~itTNG~l---------------- 147 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLT---G-G--EPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT---------------- 147 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-C--CCcchhhHHHHHHHHHhcCCCceEEEeeCcch----------------
Confidence 467888899999899999877643 3 2 222 222 2333211 23445543321
Q ss_pred HHHHHHHHHhhcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCcc----cEEEeCCCCHHHHHHHhcc--
Q 028240 111 VRSCCEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPDTIRRAHAV-- 176 (211)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~l~~~~~~-- 176 (211)
+.+.+ ..|...|++.+.+ -++..++ ...++.++++++.+++.|.. ..+-+-.++.+++.++++.
T Consensus 148 L~~~~-~~L~~aGld~VnI-SLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~ 225 (373)
T PLN02951 148 LSRKL-PRLKEAGLTSLNI-SLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTR 225 (373)
T ss_pred HHHHH-HHHHhCCCCeEEE-eeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHH
Confidence 11222 2344456655432 2333322 12357899999999999852 2233345677777766553
Q ss_pred -CCceEEeccCCcc
Q 028240 177 -HPITAVQLEWSLW 189 (211)
Q Consensus 177 -~~~~~~q~~~~~~ 189 (211)
.++.+.-++|.++
T Consensus 226 ~~gi~vr~ie~mP~ 239 (373)
T PLN02951 226 DKPINVRFIEFMPF 239 (373)
T ss_pred hCCCeEEEEEcccC
Confidence 3455555555543
No 348
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=54 Score=28.01 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCcc-----cEEEeCCCCHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeeeeC
Q 028240 141 IEETIGEMKKLVEEGKI-----KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVKSV 211 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~i-----r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 211 (211)
++-+++.|++|+++|.- -++|..+|.+-+.+...+- . +-.+|--..+ ...+.+..|+++|=.|+||
T Consensus 185 LHFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH-~---MH~E~~~v~~-eta~~i~~~k~~GgRIiaV 255 (348)
T COG0809 185 LHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEH-K---MHSEYYEVPQ-ETADAINAAKARGGRIIAV 255 (348)
T ss_pred CCCCHHHHHHHHHCCceEEEEEEEecccccccceecccccc-c---cchhheecCH-HHHHHHHHHHHcCCeEEEE
Confidence 44679999999999864 4789999987665544321 1 1111111112 1346889999999999886
No 349
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=23.07 E-value=4.7e+02 Score=24.25 Aligned_cols=103 Identities=9% Similarity=0.040 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCC--CCCHHHHHHHHHHHHHc-CcccEE---------EeCCCCHHHHHHH
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEE-GKIKYI---------GLSEASPDTIRRA 173 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~-G~ir~i---------Gvs~~~~~~l~~~ 173 (211)
++.+...+ +-..|.+.|++.|++.==...+. ..--++-|+.++.+++. ..++.. |..++..+.+++.
T Consensus 18 ~~t~dkl~-ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 18 MRTEDMLP-IAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 34444444 44447888999999840000000 00012357777777663 234433 3334443434433
Q ss_pred hcc---CCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 174 HAV---HPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 174 ~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
++. ..++.+.+..++-+...-...+++++++|..|.
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 135 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQ 135 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEE
Confidence 321 345565555554333223456788888887665
No 350
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=22.99 E-value=43 Score=26.03 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEeccCCccc-------cCchhhHHHHHHHcCCeeee
Q 028240 143 ETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWA-------RDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~-------~~~~~~~~~~~~~~gi~v~a 210 (211)
...+.++++++.|. .+++.+|.. ..+..+ ...+|+.+-++.+++. +..-..++.+|+++|+.|+|
T Consensus 135 ~~~~~l~~l~~~G~--~i~ld~~g~~~~~~~~l-~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (236)
T PF00563_consen 135 ELLENLRRLRSLGF--RIALDDFGSGSSSLEYL-ASLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIA 208 (236)
T ss_dssp HHHHHHHHHHHCT---EEEEEEETSTCGCHHHH-HHHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhcCc--eeEeeeccCCcchhhhh-hhcccccceeecccccccchhhHHHHHHHHHHHhhccccccce
Confidence 45688999999997 555555422 122222 2234555555555442 11234688899999999986
No 351
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=22.98 E-value=3.6e+02 Score=20.82 Aligned_cols=33 Identities=3% Similarity=-0.110 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeecCCC
Q 028240 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT 137 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~ 137 (211)
..+-+.+...++.+++-+|.+++..+.+|....
T Consensus 126 ~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 126 RYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 357788999999999999999999999998754
No 352
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=22.98 E-value=1.1e+02 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.0
Q ss_pred cccceeccccCCCCCC------CCCCHHHHHHHHHHHHHcCCCe
Q 028240 21 VSKLGYGCMSLSGCYN------SPLSEEDGISIIKHAFSKGITF 58 (211)
Q Consensus 21 vs~lg~G~~~~~~~~~------~~~~~~~~~~~l~~A~~~Gi~~ 58 (211)
+|.-||||-.+..+-- +-+++...+-+++.|+++||..
T Consensus 9 iPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~ 52 (291)
T COG1210 9 IPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEE 52 (291)
T ss_pred EEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCE
Confidence 6777999876653210 1245667889999999999974
No 353
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.97 E-value=1.5e+02 Score=22.38 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcC-cccEEEeCCC--CHHHHHHHhccCCceEEeccCCccccCchhhHHHHHHHcCCeee
Q 028240 141 IEETIGEMKKLVEEG-KIKYIGLSEA--SPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir~iGvs~~--~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
..+++++|.++++.+ +|-.+|..|. +...+.+++. +.+.+..|+- ...-...+..+++.|+.++
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~~i~~~~~~~--~~e~~~~i~~~~~~G~~vi 129 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---VDIKIYPYDS--EEEIEAAIKQAKAEGVDVI 129 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----EEEEEEESS--HHHHHHHHHHHHHTT--EE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---CceEEEEECC--HHHHHHHHHHHHHcCCcEE
Confidence 346777777776554 4555555553 3455666554 2444444432 1112345555666665543
No 354
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=22.96 E-value=4.5e+02 Score=24.66 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEeccCCcccc--------CchhhHHHHHHHcCCeeee
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWAR--------DIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~~~~~~~~gi~v~a 210 (211)
.......+..|++.|- .|++.+|.. ..+..+.. .+++.+-+.-++... ..-..+..+|++.||.|+|
T Consensus 677 ~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~~-l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via 753 (799)
T PRK11359 677 DTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLVS-LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA 753 (799)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHhh-CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 4567788999999998 788877643 33333333 356777666554321 1235688999999999987
No 355
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.93 E-value=1.4e+02 Score=24.89 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCC--eEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 44 GISIIKHAFSKGIT--FFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~--~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
..++|+.|.+.|+- -|++-..- ....++..+ .+ .+..++|+.--+.... ...+.+...+....++
T Consensus 6 ~k~il~~A~~~~yaV~AfN~~n~e---~~~avi~AA-ee-~~sPvIiq~~~~~~~~--------~g~~~~~~~~~~~A~~ 72 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNIHNLE---TMQVVVETA-AE-LHSPVIIAGTPGTFSY--------AGTEYLLAIVSAAAKQ 72 (284)
T ss_pred HHHHHHHHHHcCceEEEEEeCCHH---HHHHHHHHH-HH-hCCCEEEEcChhHHhh--------CCHHHHHHHHHHHHHH
Confidence 45788888888754 34433211 022222222 22 3556777653322110 1245566667777777
Q ss_pred cCCC
Q 028240 122 LDVE 125 (211)
Q Consensus 122 Lg~~ 125 (211)
-.+.
T Consensus 73 ~~VP 76 (284)
T PRK09195 73 YHHP 76 (284)
T ss_pred CCCC
Confidence 6654
No 356
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.93 E-value=4.2e+02 Score=22.96 Aligned_cols=70 Identities=9% Similarity=0.058 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCCccc------cCchhhHHHHHHHcCCeeee
Q 028240 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA------RDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~------~~~~~~~~~~~~~~gi~v~a 210 (211)
.+...+.++++++.+..-.++++.-+..++.+.+.....+++.++....+ ......+.+.+++.++.|++
T Consensus 117 p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa 192 (368)
T PRK08649 117 PELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV 192 (368)
T ss_pred HHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE
Confidence 44556666666666544455554444444444444444555555443211 10123467777777777764
No 357
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.84 E-value=5.3e+02 Score=22.70 Aligned_cols=83 Identities=13% Similarity=-0.070 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCC---C-CHHHHHHHhccCCceE
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A-SPDTIRRAHAVHPITA 181 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~-~~~~l~~~~~~~~~~~ 181 (211)
.+.+.+.+.+.+.+.-... ..+-+.+-...+..-...+.+.++.+++.|.--+++.+| + +.+.++++.+. .++.
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld~ 131 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVRE 131 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCCE
Confidence 3678888888888875532 245566666655555678899999999999887887444 3 56667777653 2455
Q ss_pred EeccCCccc
Q 028240 182 VQLEWSLWA 190 (211)
Q Consensus 182 ~q~~~~~~~ 190 (211)
+.+..+-.+
T Consensus 132 v~iSvka~d 140 (404)
T TIGR03278 132 VSFTVFATD 140 (404)
T ss_pred EEEecccCC
Confidence 666555554
No 358
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=22.81 E-value=4.9e+02 Score=22.27 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCeEeCCCCc---------CCCcHHHHHHHHHhcCCCC---cEEEEeccccccCCCcccccCCChHHHHH
Q 028240 46 SIIKHAFSKGITFFDTADKY---------GPYTNEILLGKALKELPRE---NIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y---------g~g~~E~~lG~~l~~~~r~---~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
+.++...+.|+|.+...-.- +.+++.+.+-++++...+. .+-+.-=++.+ .-+.+.+++
T Consensus 104 e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP---------gqt~e~~~~ 174 (353)
T PRK05904 104 SQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP---------ILKLKDLDE 174 (353)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC---------CCCHHHHHH
Confidence 44566666788887544322 2233333333444432221 23333333332 226788888
Q ss_pred HHHHHHhhcCCCceeEEEeec-CCC-------CCCHH---HHH-HHHHHHHHcCcccEEEeCCCCH
Q 028240 114 CCEASLRRLDVEYIDLYYQHR-VDT-------SVPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~-~~~-------~~~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 167 (211)
.++.. .+++.+++.+|.+-- |.. ..+.+ +.+ .+.+.|.+.|. +..=+|||..
T Consensus 175 tl~~~-~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~ 238 (353)
T PRK05904 175 VFNFI-LKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNY-KRYEVSNWTN 238 (353)
T ss_pred HHHHH-HhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCC-cEEechhhcC
Confidence 88855 568899999987753 211 01111 233 34455566675 4466778753
No 359
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=22.75 E-value=4.1e+02 Score=21.41 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCC--CC--cEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC--CCHHHH
Q 028240 71 EILLGKALKELP--RE--NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEET 144 (211)
Q Consensus 71 E~~lG~~l~~~~--r~--~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~--~~~~~~ 144 (211)
..++.++++... +. .+.++..+.+.. +....+...+.+.+++.+++.- -+.+.--+.. ...+.+
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~~~---------l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~ 138 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSPVQ---------LRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTA 138 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCHHH---------hCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHH
Confidence 345566655421 11 366666665421 1234556677788888876542 2332222221 234468
Q ss_pred HHHHHHHHHcCcccEEEeCCCCH--HHHHHHhccCCceEEeccCCcccc--------CchhhHHHHHHHcCCeeee
Q 028240 145 IGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWAR--------DIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~~~~~~~~gi~v~a 210 (211)
...+++|++.|- .|.+..|.. .-+..+ ...+|+.+-++-++... ..-+.++..|++.|+.|+|
T Consensus 139 ~~~l~~L~~~G~--~ialDDFGtG~ssl~~L-~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vva 211 (256)
T COG2200 139 LALLRQLRELGV--RIALDDFGTGYSSLSYL-KRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA 211 (256)
T ss_pred HHHHHHHHHCCC--eEEEECCCCCHHHHHHH-hhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEE
Confidence 889999999994 566666643 233333 22566666665554331 1235689999999999987
No 360
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=22.74 E-value=2.6e+02 Score=25.15 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=45.3
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhcc-CCceEE
Q 028240 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAV 182 (211)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~ 182 (211)
.||.+.|+|.. ...+++++...++..++|+-.+||+-..-++.++++++. ..|+++
T Consensus 205 ~Rl~t~y~d~~-------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 205 KRLRTGYLDEI-------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHhcchhhhh-------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 67778888752 245789999999999999999999999988899998876 345544
No 361
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.73 E-value=3.8e+02 Score=21.74 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHhhcCCC--------------------------ceeEEEeecCCCCCCHH---HHHHHHHHHHHcC
Q 028240 105 KGTPEYVRSCCEASLRRLDVE--------------------------YIDLYYQHRVDTSVPIE---ETIGEMKKLVEEG 155 (211)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~~--------------------------~iDl~~lh~~~~~~~~~---~~~~~l~~l~~~G 155 (211)
..+.+..++...+.|++.|+. ..+++++..|+...+++ ++++.+.+|.++|
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 346677777777777777753 35666777776666654 8999999999999
Q ss_pred cccEEEeCCCC
Q 028240 156 KIKYIGLSEAS 166 (211)
Q Consensus 156 ~ir~iGvs~~~ 166 (211)
. ..-+.+|.
T Consensus 187 m--TMivVTHE 195 (240)
T COG1126 187 M--TMIIVTHE 195 (240)
T ss_pred C--eEEEEech
Confidence 5 33444554
No 362
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.70 E-value=4.5e+02 Score=21.81 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=25.2
Q ss_pred HHHHHHHHHHc-CcccEEEeCCCCHHHHHHHhccCCceEEecc
Q 028240 144 TIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (211)
Q Consensus 144 ~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 185 (211)
+-+++++.++. |.-+.||+|.++.+++.++.+ ..++.++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~-~gaDyI~lD 215 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVA-AGADIIMFD 215 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH-cCCCEEEEC
Confidence 33444444443 323458888888888877764 445677664
No 363
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.70 E-value=1.1e+02 Score=25.42 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCCe--EeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHh
Q 028240 43 DGISIIKHAFSKGITF--FDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (211)
Q Consensus 43 ~~~~~l~~A~~~Gi~~--~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (211)
...++|+.|.+.|+-. |.+.+.- ..+.++- +-++ .+..++|..--+.... ...+.+...+...-+
T Consensus 4 ~~~~ll~~A~~~~yAV~AfN~~n~e---~~~avi~-AAe~-~~sPvIlq~~~~~~~~--------~~~~~~~~~~~~~a~ 70 (287)
T PF01116_consen 4 NMKELLKKAKEGGYAVPAFNVYNLE---TARAVIE-AAEE-LNSPVILQISPSEVKY--------MGLEYLAAMVKAAAE 70 (287)
T ss_dssp HHHHHHHHHHHHT-BEEEEE-SSHH---HHHHHHH-HHHH-TTS-EEEEEEHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCeEEEEeeCCHH---HHHHHHH-HHHH-hCCCEEEEcchhhhhh--------hhHHHHHHHHHHHHH
Confidence 4568888998887653 5443211 0222332 2222 3566777665432111 134667777777777
Q ss_pred hcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEeccCCccccC----chhh
Q 028240 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD----IENE 196 (211)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~----~~~~ 196 (211)
+.++. +-+=+=|..+ ++.+.++++. .|++++++-|.+.-. ...+
T Consensus 71 ~~~vP-ValHLDH~~~----~e~i~~ai~~---------------------------GftSVM~DgS~l~~eeNi~~T~~ 118 (287)
T PF01116_consen 71 EASVP-VALHLDHGKD----FEDIKRAIDA---------------------------GFTSVMIDGSALPFEENIAITRE 118 (287)
T ss_dssp HSTSE-EEEEEEEE-S----HHHHHHHHHH---------------------------TSSEEEEE-TTS-HHHHHHHHHH
T ss_pred HcCCC-EEeecccCCC----HHHHHHHHHh---------------------------CcccccccCCcCCHHHHHHHHHH
Confidence 77653 2222224443 3444444433 456677766654432 2467
Q ss_pred HHHHHHHcCCeeee
Q 028240 197 IVPLCRFVRLAVKS 210 (211)
Q Consensus 197 ~~~~~~~~gi~v~a 210 (211)
+.++|++.|+.|.|
T Consensus 119 vv~~ah~~gv~VEa 132 (287)
T PF01116_consen 119 VVEYAHAYGVSVEA 132 (287)
T ss_dssp HHHHHHHTT-EEEE
T ss_pred HHHhhhhhCCEEEE
Confidence 99999999999875
No 364
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.67 E-value=96 Score=21.99 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP 82 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~ 82 (211)
.++.+.-.+++...++.|.+.-+.|..||- +...+..|.+.+.
T Consensus 12 ~ys~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y~ 54 (121)
T PRK09413 12 RRTTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQYQ 54 (121)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHHh
Confidence 467788889999999999999999999998 9999999998754
No 365
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.64 E-value=2.5e+02 Score=20.45 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeC
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 163 (211)
+.+.+...+.+.++.- -+...+=..|...++..+.+.|+.+++.| +..+++.
T Consensus 86 ~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 5566666666554432 23333345577788999999999999998 4446664
No 366
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=22.60 E-value=43 Score=29.97 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=34.9
Q ss_pred CcccEEEeCCCCHHHHHHHhccCC-ceEEeccCCccccCchhhHHHHHHHcCCe
Q 028240 155 GKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWARDIENEIVPLCRFVRLA 207 (211)
Q Consensus 155 G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 207 (211)
+.+|++|+..++++.+.++..... -+..+.+..++-...+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 567889999888888877765432 23344444443332345788999998885
No 367
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=22.50 E-value=5.3e+02 Score=22.56 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=56.9
Q ss_pred cCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHH
Q 028240 65 YGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEET 144 (211)
Q Consensus 65 Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~ 144 (211)
||.| +-..+++.+++..-++++|.|--... .....+.+.++|+..|+++ ..+....++...+.+
T Consensus 6 fG~g-~~~~l~~~l~~~g~~~vlivt~~~~~------------~~g~~~~v~~~L~~~gi~~---~~f~~v~~~p~~~~v 69 (414)
T cd08190 6 FGPG-VTAEVGMDLKNLGARRVCLVTDPNLA------------QLPPVKVVLDSLEAAGINF---EVYDDVRVEPTDESF 69 (414)
T ss_pred ECcC-HHHHHHHHHHHcCCCeEEEEECcchh------------hcchHHHHHHHHHHcCCcE---EEeCCCCCCcCHHHH
Confidence 4655 55667888887553455555432221 1224456777777777654 333444445566777
Q ss_pred HHHHHHHHHcCcccEEEeCCCCHHHHHHHh
Q 028240 145 IGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (211)
.++++.+++.+-=-=|||..-++-.+.+++
T Consensus 70 ~~~~~~~~~~~~D~IIaiGGGSviD~AKai 99 (414)
T cd08190 70 KDAIAFAKKGQFDAFVAVGGGSVIDTAKAA 99 (414)
T ss_pred HHHHHHHHhcCCCEEEEeCCccHHHHHHHH
Confidence 788888888765555788777766665554
No 368
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.42 E-value=3.2e+02 Score=22.30 Aligned_cols=81 Identities=16% Similarity=-0.002 Sum_probs=50.9
Q ss_pred ceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEE--EeCCCCHHHHHHHhccCCceEEe----ccCCccccCchhhHHH
Q 028240 126 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI--GLSEASPDTIRRAHAVHPITAVQ----LEWSLWARDIENEIVP 199 (211)
Q Consensus 126 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i--Gvs~~~~~~l~~~~~~~~~~~~q----~~~~~~~~~~~~~~~~ 199 (211)
--|+.=||.=|+.. ...+++.++.|.+.|.==.+ |||.|.+.....-.+.+-|.+.| ...+.-..-++.+-++
T Consensus 75 Gk~VvRLhSGDpsi-YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~ 153 (254)
T COG2875 75 GKDVVRLHSGDPSI-YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLA 153 (254)
T ss_pred CCeEEEeecCChhH-HHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHH
Confidence 34788889877643 56789999999999876555 88887655444434444444444 3444332224566667
Q ss_pred HHHHcCCe
Q 028240 200 LCRFVRLA 207 (211)
Q Consensus 200 ~~~~~gi~ 207 (211)
...+||..
T Consensus 154 ~la~~~aT 161 (254)
T COG2875 154 ALAKHGAT 161 (254)
T ss_pred HHHhcCce
Confidence 66666643
No 369
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.36 E-value=1.6e+02 Score=23.33 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHHHcCcccEEEeCCCCHHHHHHHhcc
Q 028240 148 MKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (211)
Q Consensus 148 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 176 (211)
.+++...++ -||+|+++.++++++.+.
T Consensus 97 ar~~~~~~~--iIG~S~h~~eea~~A~~~ 123 (211)
T COG0352 97 ARELLGPGL--IIGLSTHDLEEALEAEEL 123 (211)
T ss_pred HHHhcCCCC--EEEeecCCHHHHHHHHhc
Confidence 334444443 799999999999888765
No 370
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.33 E-value=1.4e+02 Score=24.81 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCC--eEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 44 GISIIKHAFSKGIT--FFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~--~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
..++|+.|.+.|+- -|++-+.- ..+.++-.+ .+ .+..++|+.--+.... ...+.+...+....++
T Consensus 6 ~~~~l~~A~~~~yaV~AfN~~n~e---~~~avi~AA-ee-~~sPvIiq~~~~~~~~--------~g~~~~~~~~~~~a~~ 72 (284)
T PRK12737 6 TKNMLKKAQAEGYAVPAFNIHNLE---TLQVVVETA-AE-LRSPVILAGTPGTFSY--------AGTDYIVAIAEVAARK 72 (284)
T ss_pred HHHHHHHHHHcCceEEEEEeCCHH---HHHHHHHHH-HH-hCCCEEEEcCccHHhh--------CCHHHHHHHHHHHHHH
Confidence 45788888888754 35543211 022233222 22 3556777653322111 1235566667777777
Q ss_pred cCCC
Q 028240 122 LDVE 125 (211)
Q Consensus 122 Lg~~ 125 (211)
..+.
T Consensus 73 ~~VP 76 (284)
T PRK12737 73 YNIP 76 (284)
T ss_pred CCCC
Confidence 7664
No 371
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=22.32 E-value=1.8e+02 Score=18.58 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCe-EeCCC--CcCCCcHHHHHHHHHhcCCCC
Q 028240 42 EDGISIIKHAFSKGITF-FDTAD--KYGPYTNEILLGKALKELPRE 84 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~-~DtA~--~Yg~g~~E~~lG~~l~~~~r~ 84 (211)
....+.+..+++.|=.. +|-.. .++..-.++.+|..++..+++
T Consensus 4 ~~~~~~i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~ 49 (74)
T PF14213_consen 4 ERLRDEIEPALKEGEKVVLDFEGVESITSSFLNEAFGQLVREFGEE 49 (74)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcccccHHHHHHHHHHHHHHcCHH
Confidence 55667788999988442 55444 445555788899888876643
No 372
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=22.29 E-value=4.5e+02 Score=21.68 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=34.8
Q ss_pred ceeEEEeecCCCCCCHH---HHHHHHHHHHHcCcccEEEeCCCCHHHHHHH
Q 028240 126 YIDLYYQHRVDTSVPIE---ETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (211)
Q Consensus 126 ~iDl~~lh~~~~~~~~~---~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 173 (211)
..+++++..|....+.. ..++.+.+++++|. .+=+++|+.+.+++.
T Consensus 142 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~--tvi~~sH~~~~~~~~ 190 (302)
T TIGR01188 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV--TILLTTHYMEEADKL 190 (302)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHh
Confidence 46788888887776643 67888888887774 677888888877664
No 373
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=22.28 E-value=4.6e+02 Score=21.83 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=43.6
Q ss_pred HHHHHHHHcC-cccEEEeCCCCHHHHHHHhccCCceEEeccCCcccc-CchhhHHHHHHHcCCeee
Q 028240 146 GEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 146 ~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~ 209 (211)
+.+.+|.++- .=-+.|=|-++..++.+++.....+++|+.....-. ..-..+.+.|+.+|+.++
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~ 261 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAV 261 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEE
Confidence 5555665553 223555556788888888887778888887775321 123578999999999876
No 374
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.26 E-value=1.5e+02 Score=24.80 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCe--EeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 44 GISIIKHAFSKGITF--FDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~--~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
..++|+.|.+.|+-. |.+-+ +. ....++ ++-.+ .+..++|+.--+... -...+.+...+....++
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~~n-~e--~~~avi-~AAee-~~sPvIlq~s~~~~~--------~~~~~~~~~~~~~~a~~ 72 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIHN-AE--TIQAIL-EVCSE-MRSPVILAGTPGTFK--------HIALEEIYALCSAYSTT 72 (286)
T ss_pred HHHHHHHHHHCCceEEEEEeCC-HH--HHHHHH-HHHHH-HCCCEEEEcCcchhh--------hCCHHHHHHHHHHHHHH
Confidence 457888888887653 44331 11 022222 22222 355677764322111 12355666667766777
Q ss_pred cCCC
Q 028240 122 LDVE 125 (211)
Q Consensus 122 Lg~~ 125 (211)
.++.
T Consensus 73 ~~VP 76 (286)
T PRK12738 73 YNMP 76 (286)
T ss_pred CCCC
Confidence 6653
No 375
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.20 E-value=97 Score=25.86 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCceEEeccCC-----------------------------ccccCchhhHHHHHHHcCCeee
Q 028240 167 PDTIRRAHAVHPITAVQLEWS-----------------------------LWARDIENEIVPLCRFVRLAVK 209 (211)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~~~~-----------------------------~~~~~~~~~~~~~~~~~gi~v~ 209 (211)
..++.+.+...++.+.|++.+ .+.+..-.+++++|+++||.|+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
No 376
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=22.19 E-value=2.2e+02 Score=20.76 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcE
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENI 86 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~ 86 (211)
+.++..++..+|.+.|+.+.|....=-...++....+.++..+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhc
Confidence 56899999999999999987755433222255555566666555544
No 377
>PRK10200 putative racemase; Provisional
Probab=22.12 E-value=4.1e+02 Score=21.15 Aligned_cols=62 Identities=21% Similarity=0.063 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCC------------CCHHHHHHHHHHHHHcCcccEEEeCCCCHHH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 169 (211)
+.+..++=++..-.+.+.++++.+.++.++-. .+.....+.++.|.+.| +..|-+.-.++..
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~ 88 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHK 88 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHH
Confidence 56677777777778899999999999987421 13446677888888887 6777776555443
No 378
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.10 E-value=51 Score=25.63 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=10.6
Q ss_pred HHHhhcCCCceeEE
Q 028240 117 ASLRRLDVEYIDLY 130 (211)
Q Consensus 117 ~sL~~Lg~~~iDl~ 130 (211)
+.|+.||+||||==
T Consensus 87 qiLealgVD~IDES 100 (208)
T PF01680_consen 87 QILEALGVDYIDES 100 (208)
T ss_dssp HHHHHTT-SEEEEE
T ss_pred hhHHHhCCceeccc
Confidence 46889999999964
No 379
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=22.03 E-value=2.4e+02 Score=23.73 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=33.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc----ccEEEeC--CCCH---HHHHHHhccCCceEEeccC
Q 028240 134 RVDTSVPIEETIGEMKKLVEEGK----IKYIGLS--EASP---DTIRRAHAVHPITAVQLEW 186 (211)
Q Consensus 134 ~~~~~~~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~---~~l~~~~~~~~~~~~q~~~ 186 (211)
+|.....++.+++.|+.+.+.+. +|.-=|- |++. +.+.++++...|+.+|+.-
T Consensus 150 RP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~ 211 (296)
T COG0731 150 RPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKT 211 (296)
T ss_pred CCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEec
Confidence 44445568899999999998632 2222233 4443 5566677777788887743
No 380
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=85 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC
Q 028240 33 GCYNSPLSEEDGISIIKHAFSKGIT 57 (211)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~A~~~Gi~ 57 (211)
..|..+.+++++.+++..|+++||-
T Consensus 177 sr~k~dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 177 SRWKPDLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred HhcCcccCHHHHHHHHHHHHHhhhc
Confidence 3576778999999999999999984
No 381
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.99 E-value=5.2e+02 Score=22.35 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCcccEEEeCCC-CHHHHHHHhccCCceEE
Q 028240 145 IGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (211)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~ 182 (211)
+.....+++.=.+--+++..+ +++.++++++....+.+
T Consensus 294 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 294 LPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMI 332 (382)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 344455555445667777775 77888888887655554
No 382
>PRK08508 biotin synthase; Provisional
Probab=21.83 E-value=4.5e+02 Score=21.54 Aligned_cols=22 Identities=23% Similarity=0.025 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe
Q 028240 39 LSEEDGISIIKHAFSKGITFFD 60 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~D 60 (211)
.++++..+.++.|.+.|++-|-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~ 61 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFC 61 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 4788998999999999998664
No 383
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.75 E-value=6.5e+02 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC
Q 028240 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (211)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (211)
..+.++..+++....+.|+..++..
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~ 41 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVW 41 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4677888899999999999999984
No 384
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.74 E-value=2.5e+02 Score=24.19 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=10.0
Q ss_pred hhHHHHHHHcCCeee
Q 028240 195 NEIVPLCRFVRLAVK 209 (211)
Q Consensus 195 ~~~~~~~~~~gi~v~ 209 (211)
++++++|+++|+.++
T Consensus 113 ~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 113 EEIVEAAEARGVFFM 127 (351)
T ss_pred HHHHHHHHHcCcEEE
Confidence 457777777776554
No 385
>PRK06233 hypothetical protein; Provisional
Probab=21.61 E-value=5.3e+02 Score=22.25 Aligned_cols=43 Identities=2% Similarity=0.073 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCC---------CCCHHHHHHHHHHHHH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT---------SVPIEETIGEMKKLVE 153 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~ 153 (211)
+++.|++.+++.++-++.+.+=+ +|+. ..+.+.+|+.|+.|++
T Consensus 314 ~~e~I~~rI~~a~~~v~~e~l~l----spdCGf~s~~~g~~l~~~~~~~KL~~l~~ 365 (372)
T PRK06233 314 DEDEIIARIDEATEYVPLSNLAL----STQCGFASTEEGNILTEADQWAKLALVKK 365 (372)
T ss_pred CHHHHHHHHHHHHHhCCHHHEEe----cCCCCCccccccCCCCHHHHHHHHHHHHH
Confidence 78999999999999887554322 3332 2345688998888876
No 386
>PRK07671 cystathionine beta-lyase; Provisional
Probab=21.60 E-value=5.2e+02 Score=22.17 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=26.8
Q ss_pred CCHHHHHHHhc-cCCceEEeccCCccccC-chhhHHHHHHHcCCeee
Q 028240 165 ASPDTIRRAHA-VHPITAVQLEWSLWARD-IENEIVPLCRFVRLAVK 209 (211)
Q Consensus 165 ~~~~~l~~~~~-~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~ 209 (211)
.+.+.+++++. ..+..++..+-|+.-.- .-+++.+.|+++|+.++
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lv 168 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTI 168 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEE
Confidence 35666666653 24555556666653222 23568888888887665
No 387
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.58 E-value=4.5e+02 Score=21.40 Aligned_cols=119 Identities=8% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeE--eCCCCcCCCc-HHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHH
Q 028240 39 LSEEDGISIIKHAFSKGITFF--DTADKYGPYT-NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~--DtA~~Yg~g~-~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (211)
.+.++..+.++.+.+.|++.| -++..+.... .++.+....+...+-.+.+....+. .+ +..
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~-----------~~-----~e~ 125 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL-----------LD-----PEQ 125 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCC-----------CC-----HHH
Confidence 345667777777778899754 2333332211 1334433332211223333221111 12 233
Q ss_pred HHHHhhcCCCceeEEEeecC------CCCCCHHHHHHHHHHHHHcCccc----EEEeCCCCHHHHHHHh
Q 028240 116 EASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPDTIRRAH 174 (211)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~ 174 (211)
-+.|+..|++.+.+-+=..+ .....+++.+++++.+++.|.-- -+|+ +.+.+++.+.+
T Consensus 126 l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~ 193 (296)
T TIGR00433 126 AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLA 193 (296)
T ss_pred HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHH
Confidence 34566777776544322111 11235678899999999998632 2676 66766665544
No 388
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=21.52 E-value=2.1e+02 Score=24.09 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH-HHHHHHHHHHHHcCcccEE
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYI 160 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~i 160 (211)
.+++.+..+...++||...+.+.+.-...+..-+ ..+-+.|++|.++| ++.|
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V 258 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRV 258 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeE
Confidence 5778888999999999876665554333321111 15788899999999 4544
No 389
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=21.37 E-value=1.5e+02 Score=26.50 Aligned_cols=46 Identities=4% Similarity=-0.024 Sum_probs=29.1
Q ss_pred CCHHHHHHHhcc-----CCceEEeccCCccc-----cCchhhHHHHHHHcCCeeee
Q 028240 165 ASPDTIRRAHAV-----HPITAVQLEWSLWA-----RDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 165 ~~~~~l~~~~~~-----~~~~~~q~~~~~~~-----~~~~~~~~~~~~~~gi~v~a 210 (211)
.+.+.+++.+.. .+.-++..+-|+.- ...-+++.++|+++|+-|+.
T Consensus 161 id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~ 216 (460)
T PRK13238 161 FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVI 216 (460)
T ss_pred cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 567888888753 33444444445432 21125799999999998874
No 390
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.33 E-value=5.2e+02 Score=22.98 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=53.6
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHc--CcccEEEeCCCC---HHHHHHHhccC
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEE--GKIKYIGLSEAS---PDTIRRAHAVH 177 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~---~~~l~~~~~~~ 177 (211)
...+++.+.+.+++..+.++ .++.+.+-.|.+ ....+.+++.++.++++ |. .+.+++.. ++.++++.+.
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~- 132 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL- 132 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-
Confidence 34688999999888877653 245566666533 33346788999999988 44 56766633 5677777664
Q ss_pred CceEEeccCCccc
Q 028240 178 PITAVQLEWSLWA 190 (211)
Q Consensus 178 ~~~~~q~~~~~~~ 190 (211)
.++.+.+.++..+
T Consensus 133 gvd~V~islka~d 145 (442)
T TIGR01290 133 GVGHVTITINAID 145 (442)
T ss_pred CCCeEEEeccCCC
Confidence 2456666666544
No 391
>PRK08084 DNA replication initiation factor; Provisional
Probab=21.31 E-value=4e+02 Score=21.08 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=31.9
Q ss_pred eeEEEeecCCCCC---C-HHHHHHHHHHHHHcCcccEEEeCCCCHHHH
Q 028240 127 IDLYYQHRVDTSV---P-IEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (211)
Q Consensus 127 iDl~~lh~~~~~~---~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 170 (211)
.|++++...+.-. . .++.++.+..+.+.|+++-|+.|+..+..+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 5888887664321 1 235678889999999999999999776663
No 392
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=21.28 E-value=5.2e+02 Score=22.05 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC-cHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHH
Q 028240 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (211)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (211)
+++.....-+...+.|++.|=--..-+.. ...+.+ +++++.-.+++-|..=.... ++.+ ...+.
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v-~avRe~~g~~~~l~iDan~~----------~~~~----~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGDEDLERV-RALREAVGDDVRLMVDANGG----------WTLE----EAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHH-HHHHHHhCCCceEEEeCCCC----------cCHH----HHHHH
Confidence 56667777777777999975443333322 133344 45554333344443333221 1333 22233
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEeCCCCHHHHHHHhccCCceEEeccCCccccC-chhh
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENE 196 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 196 (211)
++.|. -.++.++..|-+. +-++.+.++.+.- .=-+.|=|.++..++.++++....+++|+...-.--- ....
T Consensus 208 ~~~l~--~~~l~~iEeP~~~----~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~k 281 (372)
T COG4948 208 ARALE--EYGLEWIEEPLPP----DDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALK 281 (372)
T ss_pred HHHhc--ccCcceEECCCCc----cCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHH
Confidence 33443 1236777777543 4567778888753 4447778889999999999998899999977652211 2346
Q ss_pred HHHHHHHcCCeeee
Q 028240 197 IVPLCRFVRLAVKS 210 (211)
Q Consensus 197 ~~~~~~~~gi~v~a 210 (211)
+.+.|+.+++.|-+
T Consensus 282 ia~~A~~~~~~v~~ 295 (372)
T COG4948 282 IAALAEGFGVMVGP 295 (372)
T ss_pred HHHHHHHhCCceec
Confidence 88888888877653
No 393
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.26 E-value=1.6e+02 Score=24.44 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCe--EeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 44 GISIIKHAFSKGITF--FDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~--~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
..++|+.|.+.|+-. |++-+.-- .+.++..+-+ .+..++|..--+.... ...+.+...+....++
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~~n~e~---~~avi~aAe~--~~~Pvii~~~~~~~~~--------~~~~~~~~~~~~~a~~ 72 (281)
T PRK06806 6 MKELLKKANQENYGVGAFSVANMEM---VMGAIKAAEE--LNSPIILQIAEVRLNH--------SPLHLIGPLMVAAAKQ 72 (281)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHH---HHHHHHHHHH--hCCCEEEEcCcchhcc--------CChHHHHHHHHHHHHH
Confidence 457888888887653 55432111 2223322222 3566777664322111 1344555666666666
Q ss_pred cCCC
Q 028240 122 LDVE 125 (211)
Q Consensus 122 Lg~~ 125 (211)
..+.
T Consensus 73 ~~vp 76 (281)
T PRK06806 73 AKVP 76 (281)
T ss_pred CCCC
Confidence 6654
No 394
>PHA01346 hypothetical protein
Probab=21.16 E-value=1.2e+02 Score=17.57 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=18.1
Q ss_pred cCCChHHHHHHHHHHHhhcCC
Q 028240 104 VKGTPEYVRSCCEASLRRLDV 124 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~ 124 (211)
++++.+.|...++..|++|..
T Consensus 30 pdfsqekihaeldsllrklsr 50 (53)
T PHA01346 30 PDFSQEKIHAELDSLLRKLSR 50 (53)
T ss_pred CCccHHHHHHHHHHHHHHHHh
Confidence 478999999999999998863
No 395
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.91 E-value=5.6e+02 Score=23.36 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHH
Q 028240 70 NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEM 148 (211)
Q Consensus 70 ~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l 148 (211)
.-+-+|.+|+. +.+++|+-.+... ++....+..-+.+.+++-++.- .-+-+.--+.. .+.......+
T Consensus 340 ~~~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER~f~D~~~~~~iI 407 (524)
T COG4943 340 VFRDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVRP-QQIALELTERTFADPKKMTPII 407 (524)
T ss_pred HHHHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcCh-HHheeehhhhhhcCchhhhHHH
Confidence 33457777775 5578888777543 3345567777788888777642 22222211111 2455678889
Q ss_pred HHHHHcCcccEEEeCCCC--HHHHHHHhcc----CCce--EE-eccCCccccCchhhHHHHHHHcCCeeee
Q 028240 149 KKLVEEGKIKYIGLSEAS--PDTIRRAHAV----HPIT--AV-QLEWSLWARDIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 149 ~~l~~~G~ir~iGvs~~~--~~~l~~~~~~----~~~~--~~-q~~~~~~~~~~~~~~~~~~~~~gi~v~a 210 (211)
.++++.|.--+| -.|. ..-+.-+.+. -||| ++ -+.++....-....+++.|+.+|+.++|
T Consensus 408 ~r~ReaG~~IyI--DDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 408 LRLREAGHEIYI--DDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred HHHHhcCCeEEE--ccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 999999985554 2221 1112222111 1221 11 1123332333345688999999888876
No 396
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.87 E-value=1.4e+02 Score=25.69 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHhccCCceEEeccCCcc---------cc--CchhhHHHHHHHcCCeeee
Q 028240 170 IRRAHAVHPITAVQLEWSLW---------AR--DIENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 170 l~~~~~~~~~~~~q~~~~~~---------~~--~~~~~~~~~~~~~gi~v~a 210 (211)
+.++++. .|++++++-|-+ .. ...+++.++|+..|+.|.|
T Consensus 91 i~~ai~~-GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEa 141 (347)
T PRK09196 91 CQRAIQL-GFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEG 141 (347)
T ss_pred HHHHHHc-CCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4445443 466777776654 11 1356899999999999875
No 397
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=20.87 E-value=2.8e+02 Score=23.38 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHH
Q 028240 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLV 152 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~ 152 (211)
.+++.+.+.|++..+.+|++++ +++.+....+.++.++.++.+-
T Consensus 286 GtPe~V~e~i~~~~~~~G~d~~---~l~~~~~~~~~~~~~~~i~~fa 329 (337)
T TIGR03858 286 GSPETVAEKIADTIETLGLDRF---MLHYSVGSLPHEQVMRAIELYG 329 (337)
T ss_pred eCHHHHHHHHHHHHHHcCCCeE---EEEecCCCCCHHHHHHHHHHHh
Confidence 4788888888887777887653 3443322334455555555443
No 398
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=20.86 E-value=5.1e+02 Score=21.77 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
+.-.++|+...+.|+ .+|+|.. +++.+-.+++-. +.-+|+|........+ .+.+.+-+.++ ...++
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~--h~RNltD~~i~----~ia~~ 219 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCD--HPRNLTDAQLK----AIAET 219 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcC--CCCCCCHHHHH----HHHHc
Confidence 566799999999998 7999976 788888888742 2347888876432211 11223333333 22233
Q ss_pred cCCCceeEEEeec---CCCCCCHHHHHHHHHHHHHcCcccEEEeCC
Q 028240 122 LDVEYIDLYYQHR---VDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (211)
Q Consensus 122 Lg~~~iDl~~lh~---~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (211)
=|+ |-+.+.-. .+....+++.++.++.+.+..=+.++|+.+
T Consensus 220 GGv--igi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 220 GGV--IGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred CCE--EEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 332 22222211 123466889999999999987799999986
No 399
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.84 E-value=5.4e+02 Score=22.05 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=47.5
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeecC-CCCCCHHHHHHHHHHHHHc-Cc-ccEEEeCCCC-HHHHHHHhcc
Q 028240 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV-DTSVPIEETIGEMKKLVEE-GK-IKYIGLSEAS-PDTIRRAHAV 176 (211)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~-G~-ir~iGvs~~~-~~~l~~~~~~ 176 (211)
...+++.|..++....+.++. .++-+.+-.. +|...++.+.++++.+.+. |. .|.|-+|+.. ++.++++.+.
T Consensus 127 rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~~~i~~L~~~ 202 (345)
T PRK14457 127 RSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVPKTIPQLAEL 202 (345)
T ss_pred cccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCchhhHHHHHhh
Confidence 356889999999988877652 3555555543 3334567899999999875 43 3566677643 4456666543
No 400
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.82 E-value=5.8e+02 Score=23.78 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCc-cc---------EEEeCCCCHHHHHHHh
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGK-IK---------YIGLSEASPDTIRRAH 174 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~-ir---------~iGvs~~~~~~l~~~~ 174 (211)
+.+.+. .+-..|.++|+..|++.==-..+.. ..-++-|+.|+.+++... ++ .+|.+++.-+.+++.+
T Consensus 25 ~~~d~l-~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 25 RLDDML-PIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 444443 3556677779988888200000100 001234667777666533 33 2777777655555444
Q ss_pred cc---CCceEEeccCCccccCchhhHHHHHHHcCCee
Q 028240 175 AV---HPITAVQLEWSLWARDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 175 ~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v 208 (211)
+. ..++++-+...+.+-..-...+++++++|.-+
T Consensus 104 ~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 32 34555555444333222245778888888754
No 401
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.81 E-value=5.5e+02 Score=22.11 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHHhhcCCC-ceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEeCCCCHHHHHH
Q 028240 106 GTPEYVRSCCEASLRRLDVE-YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRR 172 (211)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~~-~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~ 172 (211)
.+++.+.+-++...+.++.. ...+-+--+|+.- ..+.|+.|++.|.-| +|||-+++.+.+..
T Consensus 72 l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l-----~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~ 135 (378)
T PRK05660 72 FSAEAIQRLLDGVRARLPFAPDAEITMEANPGTV-----EADRFVGYQRAGVNRISIGVQSFSEEKLKR 135 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcC-----CHHHHHHHHHcCCCEEEeccCcCCHHHHHH
Confidence 45677777777766666543 2233333345432 237888889999766 77888888766543
No 402
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=20.78 E-value=1.5e+02 Score=25.62 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=22.6
Q ss_pred CceEEeccCCccc---------cC--chhhHHHHHHHcCCeeee
Q 028240 178 PITAVQLEWSLWA---------RD--IENEIVPLCRFVRLAVKS 210 (211)
Q Consensus 178 ~~~~~q~~~~~~~---------~~--~~~~~~~~~~~~gi~v~a 210 (211)
.|++++++-|-+. .+ ..+++.++|+..||.|.|
T Consensus 98 GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEa 141 (347)
T PRK13399 98 GFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEG 141 (347)
T ss_pred CCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3566666666442 11 246799999999999875
No 403
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=20.70 E-value=1.3e+02 Score=20.15 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeE
Q 028240 39 LSEEDGISIIKHAFSKGITFF 59 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~ 59 (211)
++.+.+.++.+.++++||+-+
T Consensus 70 VP~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 70 VPAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp S-HHHHHHHHHHHHHTT-SEE
T ss_pred cCHHHHHHHHHHHHHcCCCEE
Confidence 477889999999999999854
No 404
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.67 E-value=6e+02 Score=22.53 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCcCCCcHHHH---HHHHHhcCCC-CcEEEEeccccccCCCcccccCCChHHHHH
Q 028240 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPYTNEIL---LGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (211)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~~E~~---lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (211)
.+.++..++++..-+. |++-+=-+..-.-=.+... +-+.|++++. +.+.|.|+.... .+..|..
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv-----------~P~RIT~ 206 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVV-----------LPQRITD 206 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccc-----------cccccCH
Confidence 3567888888877764 8874433321111012222 3344455544 347788887543 2344555
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEE------EeCCCCHHHHHHHhc
Q 028240 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPDTIRRAHA 175 (211)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~ 175 (211)
.+-+.|++.+. -.+.+|.--+..-..++.++++.|++.|..-.. | -|.+++.+.++..
T Consensus 207 ell~~Lk~~~~---~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~ 270 (417)
T TIGR03820 207 ELVAILKKHHP---VWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVH 270 (417)
T ss_pred HHHHHHHhcCC---eEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHH
Confidence 66666666663 345567654444467899999999999964222 2 2567777766654
No 405
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.50 E-value=4.3e+02 Score=25.19 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--CcccEEEeCCCCHHHH
Q 028240 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPDTI 170 (211)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l 170 (211)
+-+.+++-++.....-.....-+|+|+..+.-. ...+++|.+..++ +.+..|.++|.....+
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 356666666655443333455688888765432 3567787777777 8999999998754333
No 406
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=20.45 E-value=5.7e+02 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCCCCcC
Q 028240 36 NSPLSEEDGISIIKHAFSKGITFFDTADKYG 66 (211)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 66 (211)
....+++.+.++++++.+.|...|--++-.|
T Consensus 140 ~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG 170 (494)
T TIGR00973 140 AGRTEIPFLARIVEAAINAGATTINIPDTVG 170 (494)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 3456788888888888888888775555544
No 407
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=20.44 E-value=61 Score=20.04 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=10.4
Q ss_pred hhhHHHHHHHcCCee
Q 028240 194 ENEIVPLCRFVRLAV 208 (211)
Q Consensus 194 ~~~~~~~~~~~gi~v 208 (211)
..+++++|+++|.-+
T Consensus 29 ~~eV~~YC~~~GWIi 43 (57)
T PF08727_consen 29 SPEVREYCEEQGWII 43 (57)
T ss_dssp -HHHHHHHHHHT--T
T ss_pred CHHHHHHHHHCCccc
Confidence 457999999999754
No 408
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.40 E-value=3.1e+02 Score=22.25 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=57.2
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHH-HHHHHHcCcccEEEeCCC-----CHHHHHHHhcc---CCceEEe
Q 028240 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSEA-----SPDTIRRAHAV---HPITAVQ 183 (211)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs~~-----~~~~l~~~~~~---~~~~~~q 183 (211)
+.++..|+-.| +|||++=+-|=......++.++. ++-+++.|.--+.| .++ ....+.+.++. ..|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 46777888888 89999999886655544445544 44455667766666 221 11223333332 3577776
Q ss_pred ccCCccccCc--hhhHHHHHHHcCCeee
Q 028240 184 LEWSLWARDI--ENEIVPLCRFVRLAVK 209 (211)
Q Consensus 184 ~~~~~~~~~~--~~~~~~~~~~~gi~v~ 209 (211)
+.-..+.-.. ..++++.++++|..|+
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 6555444332 2357888888887765
No 409
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.39 E-value=1.3e+02 Score=15.95 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHcCCC
Q 028240 42 EDGISIIKHAFSKGIT 57 (211)
Q Consensus 42 ~~~~~~l~~A~~~Gi~ 57 (211)
.+-..++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4567889999999985
No 410
>PLN02231 alanine transaminase
Probab=20.30 E-value=5.1e+02 Score=23.61 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHcC-cccEEEeCC
Q 028240 141 IEETIGEMKKLVEEG-KIKYIGLSE 164 (211)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir~iGvs~ 164 (211)
++++-++++..+.+| ++|.+=++|
T Consensus 255 ~~~Le~~l~~~~~~~~~~k~ivl~n 279 (534)
T PLN02231 255 ISELKKQLEDARSKGITVRALVVIN 279 (534)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeC
Confidence 333333333333333 455544444
No 411
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.27 E-value=1.6e+02 Score=24.70 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCccc
Q 028240 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (211)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (211)
.++..+.+.+.+++||++ +|....-......-.+-+.+.+.+|.++|.|-
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 467788899999999985 57421111111111335667888999999884
No 412
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.26 E-value=5.8e+02 Score=22.16 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHH--hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEeCCCCHHHHHHHhccCCceEEec
Q 028240 107 TPEYVRSCCEASL--RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (211)
Q Consensus 107 s~~~i~~~~~~sL--~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (211)
+...+.+.+++.. ..-|++ ++=+-.|+ .+..+++.+++++=.|--++=--|++....++++.+--.+--+
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGce---iVRvav~~-----~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRIN 108 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCE---IVRVAVPD-----MEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRIN 108 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCC---EEEEccCC-----HHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEEC
Confidence 3455666666654 555764 44445554 4788999999999888888777899888888877643333444
Q ss_pred cCCccc-cCchhhHHHHHHHcCCee
Q 028240 185 EWSLWA-RDIENEIVPLCRFVRLAV 208 (211)
Q Consensus 185 ~~~~~~-~~~~~~~~~~~~~~gi~v 208 (211)
|=|+-. +..-..+++.|+++|+.+
T Consensus 109 PGNig~~~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAKDYGIPI 133 (360)
T ss_pred CCCCCchHHHHHHHHHHHHHCCCCE
Confidence 555544 222357999999999875
No 413
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.23 E-value=3.1e+02 Score=23.86 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=47.9
Q ss_pred ccccCCChHHHHHHHHHHHhhcCC-------------CceeEEEeecCCC-CCCHHHHHHHHHHHHHc-C--c-ccEEEe
Q 028240 101 SVIVKGTPEYVRSCCEASLRRLDV-------------EYIDLYYQHRVDT-SVPIEETIGEMKKLVEE-G--K-IKYIGL 162 (211)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~-------------~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~-G--~-ir~iGv 162 (211)
+...++++.+|..|+....+.++. ..+.-+.+-...+ -.-++.++++++.|.+. | . -|.|=|
T Consensus 130 G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITV 209 (371)
T PRK14461 130 GLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTV 209 (371)
T ss_pred CcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEE
Confidence 344678999999999887666532 2344444444432 23357899999999765 2 2 357777
Q ss_pred CCCCH-HHHHHHhcc
Q 028240 163 SEASP-DTIRRAHAV 176 (211)
Q Consensus 163 s~~~~-~~l~~~~~~ 176 (211)
|+... ..+.++.+.
T Consensus 210 ST~Givp~I~~la~~ 224 (371)
T PRK14461 210 STVGLVKGIRRLANE 224 (371)
T ss_pred EeecchhHHHHHHhc
Confidence 77553 456666553
No 414
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=20.12 E-value=5.1e+02 Score=21.53 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=29.0
Q ss_pred HhhcCCCceeEEEeecCCCCCCH---HHHHHHHHHHHHcCcccEEEeCCCC
Q 028240 119 LRRLDVEYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEAS 166 (211)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (211)
+...|++.=++++=-........ -++++.++.+++-|.=-.+|+|+-+
T Consensus 172 a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg~SRKs 222 (282)
T PRK11613 172 CEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLVGMSRKS 222 (282)
T ss_pred HHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEecccH
Confidence 45567764444441111111222 2678888888888888899999744
No 415
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=20.05 E-value=1.8e+02 Score=24.26 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCe--EeCCCCcCCCcHHHHHHHHHhcCCCCcEEEEeccccccCCCcccccCCChHHHHHHHHHHHhh
Q 028240 44 GISIIKHAFSKGITF--FDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (211)
Q Consensus 44 ~~~~l~~A~~~Gi~~--~DtA~~Yg~g~~E~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (211)
..++|..|.+.|+-. |++-+. . ..+.++-.+-+ .+..++|+.--+.... ...+.+...+....++
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~-e--~~~avi~AAee--~~sPvIlq~s~~~~~~--------~~~~~~~~~~~~~a~~ 70 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNL-E--TIQAVVETAAE--MRSPVILAGTPGTFKH--------AGTEYIVALCSAASTT 70 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCH-H--HHHHHHHHHHH--hCCCEEEEeCccHHhh--------CCHHHHHHHHHHHHHH
Confidence 357788888887653 443321 1 12223322222 3566777653322111 1345566777777777
Q ss_pred cCCC
Q 028240 122 LDVE 125 (211)
Q Consensus 122 Lg~~ 125 (211)
..+.
T Consensus 71 ~~VP 74 (282)
T TIGR01858 71 YNMP 74 (282)
T ss_pred CCCC
Confidence 7764
Done!